Citrus Sinensis ID: 022213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHcccccHHHHHHHHHHHHcccccccEEEcccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHcccEEEEEcccccccccccHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEcccccccccccccccEEcccccHHHHHHHHHHHHHHHHccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHEEEEcHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHcccEEEEEEccHHHcccccHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEccccccEcccccccHEccccccccEEEEEcccHHEcccccEEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mengaenkwgfedkqehkaapavtVKTSLASIIDsvnkndprpvvplgygdptafpcfrtAVEAEDAIVDAVRsgkfncyatnsgippaRRAIADYLSrdlpyklsadDVYVTLGCKQAVEVILSVLarpganvllprpgwpyyegiaqrKQVEVRhfdllpernwevDLDAVEALADKNTAAMVIinpgnpcgnvftyHHLQEIAEMARKLRVMVVADEVyghltfgsipytpmglfgsiVPVItlgsiskrwlvpgwrfgwlvtndpngifqksgiidSIKDCLsiysdiptFIQVCES
Flexible Loop (DISEMBL)
mengaenkwgfedkqehkaapavTVKTSLASIIdsvnkndprpvvPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFncyatnsgippaRRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Low Complexity Region (SEG)
MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTaveaedaivdavRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Disordered region (IsUnstruct)
************************V*TSLASIIDSVN***PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC**
Disordered Region (DISOPRED)
**************************TSL*************PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Disordered Region (DISEMBL)
MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Disordered Region (DISPRO)
*****************KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q9FN30	414	Probable aminotransferase	yes	no	0.946	0.688	0.556	1e-95
Q9SIV0	462	S-alkyl-thiohydroximate l	no	no	0.980	0.638	0.511	1e-94
Q9LVY1	420	Tyrosine aminotransferase	no	no	0.980	0.702	0.533	3e-93
Q67Y55	449	Probable aminotransferase	no	no	0.960	0.643	0.512	3e-91
Q9ST02	461	Nicotianamine aminotransf	N/A	no	0.883	0.577	0.576	1e-88
Q9ST03	551	Nicotianamine aminotransf	N/A	no	0.916	0.500	0.548	8e-87
Q9SK47	445	Probable aminotransferase	no	no	0.973	0.658	0.501	8e-80
Q8VYP2	424	Probable aminotransferase	no	no	0.794	0.563	0.527	2e-70
Q9SUR6	422	Cystine lyase CORI3 OS=Ar	no	no	0.797	0.568	0.512	1e-69
Q8QZR1	454	Tyrosine aminotransferase	yes	no	0.807	0.535	0.431	1e-56

>sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1

 Score =  349 bits (896), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/300 (55%), Positives = 215/300 (71%), Gaps = 15/300 (5%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDP---RPVVPLGYGDPTAFPC 57
           MENGA                 +T+K  L+ +++S+   +    + V+ LG GDPT + C
Sbjct: 1   MENGATT------------TSTITIKGILSLLMESITTEEDEGGKRVISLGMGDPTLYSC 48

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117
           FRT   +  A+ D++ S KF+ Y+   G+P ARRAIA+YLSRDLPYKLS DDV++T GC 
Sbjct: 49  FRTTQVSLQAVSDSLLSNKFHGYSPTVGLPQARRAIAEYLSRDLPYKLSQDDVFITSGCT 108

Query: 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA 177
           QA++V LS+LARP AN+LLPRPG+P YE  A+ + +EVR+ DLLPE  WE+DLDAVEALA
Sbjct: 109 QAIDVALSMLARPRANILLPRPGFPIYELCAKFRHLEVRYVDLLPENGWEIDLDAVEALA 168

Query: 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL 237
           D+NT A+V+INPGNPCGNV++Y HL +IAE A+KL  +V+ADEVYGHL FGS P+ PMG+
Sbjct: 169 DENTVALVVINPGNPCGNVYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGV 228

Query: 238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           FGSIVPV+TLGS+SKRW+VPGWR GW VT DP+G F+   II+  K    I     TFIQ
Sbjct: 229 FGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDILGGPATFIQ 288

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1 PE=1 SV=1

 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 151/295 (51%), Positives = 213/295 (72%)

Query: 3   NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAV 62
           NG  + W F    +   A  VT++  +  + D+  K+  + ++PLG+GDP+ +PCFRT +
Sbjct: 27  NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCI 86

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
           EAEDA+VD +RSGK N Y   +GI PARRA+ADY++RDLP+KL+ +D+++T GC Q +E+
Sbjct: 87  EAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA 182
           +   LARP AN+LLPRPG+P+Y+  A    +EVR FDLLPE+ WE+DL+ +EA+AD+NT 
Sbjct: 147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTV 206

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242
           AMV+INP NPCGNV+++ HL+++AE ARKL +MV++DEVY    FG  P+  MG F SIV
Sbjct: 207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV 266

Query: 243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           PV+TL  ISK W+VPGW+ GW+  NDP G+F+ + ++ SIK  L +  D  T IQ
Sbjct: 267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ 321

C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1

 Score =  342 bits (876), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 158/296 (53%), Positives = 220/296 (74%), Gaps = 1/296 (0%)

Query: 2   ENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTA 61
           ENGA+ +W F   +  + + ++T++  L ++I+ ++  D RPV+PLG+GDP+ FP FRT 
Sbjct: 3   ENGAK-RWNFGANEVVERSNSLTIRDYLNTLINCLDGGDVRPVIPLGHGDPSPFPSFRTD 61

Query: 62  VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121
             A +AI DAVRS KFN Y+++SG+P AR+A+A+YLS DL Y++S +DV++T GC QA+E
Sbjct: 62  QAAVEAICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQISPNDVHITAGCVQAIE 121

Query: 122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181
           +++S LA PGAN+LLPRP +P Y+  A   Q+EVR+FDLLPE  W+VDLD VEALAD  T
Sbjct: 122 ILISALAIPGANILLPRPTYPMYDSRAAFCQLEVRYFDLLPENGWDVDLDGVEALADDKT 181

Query: 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241
            A+++INP NPCGNVF+  HLQ+IAE A KL ++V+ADEVY H  FG  P+  M  F  +
Sbjct: 182 VAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAEL 241

Query: 242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           VPVI LG+ISKRW VPGWR GW+VT DP+GI + SG + ++ + +++ +D  TFIQ
Sbjct: 242 VPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQ 297

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

>sp|Q67Y55|TAT1_ARATH Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 205/289 (70%)

Query: 9   WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAI 68
           W F        A +VT++  +  + D  + +  +P++PL +GDP+ +PC+RT++  E+A+
Sbjct: 27  WRFRGSDNAAKASSVTMRVIVYKLFDECSLDVKKPLLPLAHGDPSVYPCYRTSILVENAV 86

Query: 69  VDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA 128
           VD +RSGK N Y   +GI PAR+A+ADY++RDL  K+  +DV++T+GC Q +EV+L  LA
Sbjct: 87  VDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGIEVVLQSLA 146

Query: 129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188
           RP AN+LLPRP +P+YE  A    +EVR FDLLPE+ WE+DL  +EA+AD+NT AMVIIN
Sbjct: 147 RPNANILLPRPSYPHYEARAVYSGLEVRKFDLLPEKEWEIDLPGIEAMADENTVAMVIIN 206

Query: 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248
           P NPCGNV++Y HL+++AE A+KL +MV+ DEVY    FG  P+ PMG F SI PVITLG
Sbjct: 207 PNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLG 266

Query: 249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
            ISK W+VPGWR GW+  NDP GI + +G++ SI+  L I  D  T +Q
Sbjct: 267 GISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQ 315

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ST02|NAATA_HORVU Nicotianamine aminotransferase A OS=Hordeum vulgare GN=naat-A PE=1 SV=2

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 211/267 (79%), Gaps = 1/267 (0%)

Query: 32  IIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARR 91
           I  SV ++ PRPV+PL +GDP+ FP FRTAVEAEDA+  A+R+G+FNCYA   G+P AR 
Sbjct: 68  ISASVEESGPRPVLPLAHGDPSVFPAFRTAVEAEDAVAAALRTGQFNCYAAGVGLPAARS 127

Query: 92  AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPRPGWPYYEGIAQR 150
           A+A++LS+ +PYKLSADDV++T G  QA+EVI+ VLA+  GAN+LLPRPG+P YE  A  
Sbjct: 128 AVAEHLSQGVPYKLSADDVFLTAGGTQAIEVIIPVLAQTAGANILLPRPGYPNYEARAAF 187

Query: 151 KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
            ++EVRHFDL+P++ WE+D+D++E++ADKNT AMVIINP NPCG+V++Y HL ++AE+AR
Sbjct: 188 NKLEVRHFDLIPDKGWEIDIDSLESIADKNTTAMVIINPNNPCGSVYSYDHLAKVAEVAR 247

Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN 270
           KL ++V+ADEVYG L  GS P+ PMG+FG I PV+++GS+SK W+VPGWR GW+   DP 
Sbjct: 248 KLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWVAVYDPT 307

Query: 271 GIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
            I +K+ I  SI + L++ +D  TF+Q
Sbjct: 308 KILEKTKISTSITNYLNVSTDPATFVQ 334

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9ST03|NAATB_HORVU Nicotianamine aminotransferase B OS=Hordeum vulgare GN=naat-B PE=1 SV=2

 Score =  320 bits (820), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 152/277 (54%), Positives = 212/277 (76%), Gaps = 1/277 (0%)

Query: 23  VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT 82
           ++++     I  SV +  PRPV+PL +GDP+ FP FRTAVEAEDA+  AVR+G+FNCY  
Sbjct: 149 MSIRAIRYKISASVQEKGPRPVLPLAHGDPSVFPAFRTAVEAEDAVAAAVRTGQFNCYPA 208

Query: 83  NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPRPGW 141
             G+P AR A+A++LS+ +PY LSADDV++T G  QA+EVI+ VLA+  GAN+LLPRPG+
Sbjct: 209 GVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVIIPVLAQTAGANILLPRPGY 268

Query: 142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201
           P YE  A   ++EVRHFDL+P++ WE+D+D++E++ADKNT AMVIINP NPCG+V++Y H
Sbjct: 269 PNYEARAAFNRLEVRHFDLIPDKGWEIDIDSLESIADKNTTAMVIINPNNPCGSVYSYDH 328

Query: 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261
           L ++AE+A++L ++V+ADEVYG L  GS P+ PMG+FG I PV+++GS+SK W+VPGWR 
Sbjct: 329 LSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGSLSKSWIVPGWRL 388

Query: 262 GWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQV 298
           GW+   DP  I Q++ I  SI + L++ +D  TFIQ 
Sbjct: 389 GWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQA 425

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9SK47|TAT3_ARATH Probable aminotransferase TAT3 OS=Arabidopsis thaliana GN=TAT3 PE=2 SV=1

 Score =  297 bits (760), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 148/295 (50%), Positives = 203/295 (68%), Gaps = 2/295 (0%)

Query: 3   NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAV 62
           N   N W F+       A AVT++     +  +   N  + ++    G+P+A   FRT  
Sbjct: 10  NANANVWRFKGNGATSDAAAVTLRKLAFGMFKNCTMNSGKTILFPTPGEPSAHSNFRTCP 69

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
           EAE+A+  A RSG  N YA + G+  ARRA+A+YL+ +LP KL A+DVY+T GC QA+E+
Sbjct: 70  EAEEAVAAAARSGMANSYAPSPGVFKARRAVAEYLNGELPTKLKAEDVYITGGCNQAIEI 129

Query: 123 ILSVLA-RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181
           ++  LA  P AN+LLPRPG+P+Y+  A    +E+R +DLLPE +WE++LD +EA AD+NT
Sbjct: 130 VIDSLAGNPSANILLPRPGYPHYDARAVYSGLEIRKYDLLPESDWEINLDGLEAAADENT 189

Query: 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241
            AMVIINP NPCGNV+TY HL ++AEMARKL +M+++DEVY H+ +G  P+ PMG F SI
Sbjct: 190 VAMVIINPNNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASI 249

Query: 242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFI 296
            PVITLGSISK W+ PGWR GW+  NDPNGIF  +G++ +I+D L +    P+FI
Sbjct: 250 APVITLGSISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQ-PSFI 303

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VYP2|TAT4_ARATH Probable aminotransferase TAT4 OS=Arabidopsis thaliana GN=At4g23590 PE=2 SV=1

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 176/239 (73%)

Query: 59  RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ 118
            T+  AE A+V AV  G  N YA + G+P A+RA+A+YL+RDL  KL+ DDVY+T+GCKQ
Sbjct: 52  ETSHTAEKAVVKAVLCGTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQ 111

Query: 119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178
           A+E+ +S+LA+P AN+LLPRPG+P+    +  K +EVR ++ +PER++E+D ++V  + D
Sbjct: 112 AIELAVSILAKPKANILLPRPGFPWDMVHSIYKHLEVRRYEFIPERDFEIDFNSVREMVD 171

Query: 179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238
           +NT A+ IINP NP GN +T  HL+++A +AR+L +MVV+DEVY    FGS P+ PMG F
Sbjct: 172 ENTFAIFIINPHNPNGNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKF 231

Query: 239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
            SIVPVITLGSISK W+VPGWR GWL  +D NG+F+ + ++ + K+ L I S  PT IQ
Sbjct: 232 SSIVPVITLGSISKGWIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQ 290

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SUR6|CORI3_ARATH Cystine lyase CORI3 OS=Arabidopsis thaliana GN=CORI3 PE=1 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 177/240 (73%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117
             T+  AE A+V AV  G  N YA + G+  A+ A+A+YL++ LP KL+ADDV++TLGCK
Sbjct: 51  LETSNTAEKAVVKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKLTADDVFMTLGCK 110

Query: 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA 177
           QA+E+ + +LA+P ANVLLP PG+P+    +  K +EVRH++ LPE+N+E+D D+V AL 
Sbjct: 111 QAIELAVDILAKPKANVLLPSPGFPWDLVRSIYKNLEVRHYNFLPEKNFEIDFDSVRALV 170

Query: 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL 237
           D+NT A+ IINP NP GN ++  HL+++AE+A++L++MVV+DEV+    FGS P+ PMG 
Sbjct: 171 DENTFAIFIINPHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWTLFGSNPFVPMGK 230

Query: 238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           F SIVPV+TLGSISK W VPGWR GWL  +D +G+F+ + ++ + +D L I ++ PT IQ
Sbjct: 231 FSSIVPVVTLGSISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFLQINNNPPTVIQ 290

Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8QZR1|ATTY_MOUSE Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=1 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 159/248 (64%), Gaps = 5/248 (2%)

Query: 29  LASIIDS--VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           + +I+D+  V  N  + V+ L  GDPT F    T  E   A+ DA+ SGK+N YA + G 
Sbjct: 56  IRAIVDNMKVKPNPNKTVISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGY 115

Query: 87  PPARRAIADYL-SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
             +R  +A Y    + P  L A DV +T GC QA+E+ L+VLA PG N+L+PRPG+  Y 
Sbjct: 116 LSSREEVASYYHCPEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYR 173

Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
            +A+   +EV+ ++LLPE++WE+DL  +E+L D+ TA +V+ NP NPCG+VF+  HLQ+I
Sbjct: 174 TLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKI 233

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
             +A +  V ++ADE+YG + F    Y PM    + VP+++ G ++KRWLVPGWR GW++
Sbjct: 234 LAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAKRWLVPGWRLGWIL 293

Query: 266 TNDPNGIF 273
            +D   IF
Sbjct: 294 IHDRRDIF 301

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using glutamic acid, with 2-oxoglutarate as cosubstrate (in vitro). Has no transaminase activity towards phenylalanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
255553657	419	tyrosine aminotransferase, putative [Ric	0.986	0.708	0.670	1e-119
224133454	418	aminotransferase family protein [Populus	0.983	0.708	0.663	1e-119
225446437	419	PREDICTED: tyrosine aminotransferase [Vi	0.986	0.708	0.653	1e-119
359485208	419	PREDICTED: LOW QUALITY PROTEIN: tyrosine	0.986	0.708	0.636	1e-114
302143324	360	unnamed protein product [Vitis vinifera]	0.986	0.825	0.636	1e-113
224133458	418	aminotransferase family protein [Populus	0.983	0.708	0.657	1e-113
225446435	419	PREDICTED: tyrosine aminotransferase iso	0.986	0.708	0.646	1e-112
302143330	518	unnamed protein product [Vitis vinifera]	0.986	0.573	0.646	1e-112
147811786	365	hypothetical protein VITISV_034866 [Viti	0.983	0.810	0.630	1e-110
225446431	419	PREDICTED: tyrosine aminotransferase [Vi	0.986	0.708	0.636	1e-110

>gi|255553657|ref|XP_002517869.1| tyrosine aminotransferase, putative [Ricinus communis] gi|223542851|gb|EEF44387.1| tyrosine aminotransferase, putative [Ricinus communis]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/297 (67%), Positives = 244/297 (82%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG   KWGF   +   AA AVTV+  L ++  ++NK D R V+PLG+GDP+AFP F T
Sbjct: 1   MENGVSTKWGFRANEGLTAAAAVTVRGVLDALNSNLNKEDERTVIPLGHGDPSAFPSFLT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
           A  AEDAIVDA++S K+NCY+   G+ PARRAIADYL+ DLPY+LS DDV+VTLGC QA+
Sbjct: 61  ASAAEDAIVDALKSAKYNCYSPTVGLLPARRAIADYLNIDLPYELSPDDVFVTLGCTQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           EV L+VL RPGAN+LLPRPG+PYY GIA +  +EVRHFDLLPE+ WEV+ +AVEALAD+N
Sbjct: 121 EVSLTVLGRPGANILLPRPGFPYYTGIAAQTHLEVRHFDLLPEKGWEVNFEAVEALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           TAAMVIINPGNPCGNV++Y HL++IAE ARKL ++V+ADEVY HLTFGS P+ PMG+FGS
Sbjct: 181 TAAMVIINPGNPCGNVYSYEHLKKIAETARKLGILVIADEVYAHLTFGSTPFVPMGVFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           +VPV+TLGSISKRW+VPGWR GWLV +DP GI Q++G++DSI  CL+I SD  TFIQ
Sbjct: 241 VVPVLTLGSISKRWIVPGWRLGWLVLSDPKGILQETGVVDSITSCLNISSDPATFIQ 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133454|ref|XP_002328046.1| aminotransferase family protein [Populus trichocarpa] gi|222837455|gb|EEE75834.1| aminotransferase family protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/297 (66%), Positives = 248/297 (83%), Gaps = 1/297 (0%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG++ KWGF+  +    + AVTV+  L  + D++NK D R V+PL +GDP+AFPCFRT
Sbjct: 1   MENGSK-KWGFQANKSLSTSSAVTVRGVLNVLQDNLNKEDTRQVMPLAHGDPSAFPCFRT 59

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              A++A+VDAVRS K+N YA   G+ PARR++AD+L+RDLPYKLS DDV++TLGC QA+
Sbjct: 60  TTVADEAVVDAVRSAKYNHYAPTVGLLPARRSVADFLNRDLPYKLSPDDVFLTLGCTQAI 119

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+ ++VLARPGAN+LLPRPG+PYYE  A    +E RHFDL+PE+ WEVDLDAVEALAD+N
Sbjct: 120 EITITVLARPGANILLPRPGFPYYEARAAHSHLEARHFDLIPEKGWEVDLDAVEALADEN 179

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMV+INPGNPCG+V++Y HLQ+IAE ARKL +MV+ADEVYGHLTFG+ P+ PMG+FGS
Sbjct: 180 TVAMVVINPGNPCGSVYSYQHLQKIAETARKLGIMVIADEVYGHLTFGNSPFVPMGVFGS 239

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           IVPV+TLGSISKRW+VPGWR GWLVT+DPNGI Q+SG+++SIK CL+I SD  TFIQ
Sbjct: 240 IVPVLTLGSISKRWIVPGWRIGWLVTSDPNGILQESGVVESIKGCLNISSDPVTFIQ 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446437|ref|XP_002276551.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143331|emb|CBI21892.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 194/297 (65%), Positives = 245/297 (82%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG++ +WGF+  QE   A AVT++  L  ++ ++++ D RPV+PLG+GDP+AFPCFRT
Sbjct: 1   MENGSKKRWGFQGNQELNMAAAVTIRGVLGKVMSNLSEEDNRPVIPLGHGDPSAFPCFRT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              AEDAI DAVRS KFN YA   G+ PARRA+A+YLSRDLPY+LS DD+Y+T+GC QA+
Sbjct: 61  TPVAEDAIADAVRSAKFNSYAPTVGLLPARRAVAEYLSRDLPYQLSPDDIYLTIGCTQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+++ VLARPGAN+LLPRPG+PYYE  A    +EVRHFDLLPE+ WEVDL+AV+ALAD+N
Sbjct: 121 EIMIQVLARPGANILLPRPGFPYYEARAAADNLEVRHFDLLPEQGWEVDLEAVKALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVI+NPGNP G+VFTY HL+++AE AR L +MV++DEVYGHL FGS P+ PMG+FGS
Sbjct: 181 TVAMVIVNPGNPSGSVFTYEHLKKVAETARNLGIMVISDEVYGHLAFGSKPFVPMGVFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           IVP++T+GSISKRW+VPGWR GWLVTND NGI  KSG+++SI  CL+I SD  TFIQ
Sbjct: 241 IVPIVTVGSISKRWVVPGWRLGWLVTNDLNGILHKSGVVESIISCLNISSDPATFIQ 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485208|ref|XP_003633232.1| PREDICTED: LOW QUALITY PROTEIN: tyrosine aminotransferase-like [Vitis vinifera]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 235/297 (79%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG   +WGF+  +E   A ++T++  L  ++ ++N  D RPV+PLG+GDP+AF CFRT
Sbjct: 1   MENGGRKRWGFQGNEELDKAASITIRGVLNKVMSNLNPQDHRPVIPLGHGDPSAFSCFRT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              AEDAIVDA+RS KFN YA   GI PARRAIA++LS DLPYKLS DD+++T+GC QA+
Sbjct: 61  TPVAEDAIVDALRSRKFNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIFLTIGCSQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+I+ VLARPGAN+LLPRPG+P+YE  A    +E RHFDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 121 ELIIKVLARPGANILLPRPGYPFYESHAAANHLEFRHFDLLPEKGWEVDLEGVKALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGN+FT+ HL+++AE AR L ++V++DEVY HL FG  PY  MG FGS
Sbjct: 181 TVAMVIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGGNPYVSMGAFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSG+++SI   L+I SD  TFIQ
Sbjct: 241 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNISSDPATFIQ 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143324|emb|CBI21885.3| unnamed protein product [Vitis vinifera]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 235/297 (79%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG   +WGF+  +E   A ++T++  L  ++ ++N  D RPV+PLG+GDP+AF CFRT
Sbjct: 1   MENGGRKRWGFQGNEELDKAASITIRGVLNKVMSNLNPQDHRPVIPLGHGDPSAFSCFRT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              AEDAIVDA+RS KFN YA   GI PARRAIA++LS DLPYKLS DD+++T+GC QA+
Sbjct: 61  TPVAEDAIVDALRSRKFNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIFLTIGCSQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+I+ VLARPGAN+LLPRPG+P+YE  A    +E RHFDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 121 ELIIKVLARPGANILLPRPGYPFYESHAAANHLEFRHFDLLPEKGWEVDLEGVKALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGN+FT+ HL+++AE AR L ++V++DEVY HL FG  PY  MG FGS
Sbjct: 181 TVAMVIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGGNPYVSMGAFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSG+++SI   L+I SD  TFIQ
Sbjct: 241 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNISSDPATFIQ 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133458|ref|XP_002328047.1| aminotransferase family protein [Populus trichocarpa] gi|222837456|gb|EEE75835.1| aminotransferase family protein [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/298 (65%), Positives = 240/298 (80%), Gaps = 2/298 (0%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENG E KW F+  +   +  ++TV+  L  + +++NK D R V+PL +GDP+AFPCFRT
Sbjct: 1   MENGTE-KWSFQASKGMNSTASITVRGVLNRLAETLNKEDKREVIPLAHGDPSAFPCFRT 59

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              A++AI DAVRS K N YA   G+ PARRA ADYL+RDLPYKLS DDV++TLGCKQA+
Sbjct: 60  TPVADEAIFDAVRSAKNNHYAPTVGLLPARRAAADYLNRDLPYKLSPDDVFLTLGCKQAI 119

Query: 121 EVILSVLAR-PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK 179
           E+ ++VLA  PGANVLLPRPG+PYYE  A    ++VRHFDLLPE+ WEVDL+AVEALAD+
Sbjct: 120 EIAVTVLAAIPGANVLLPRPGFPYYEARAAHSCLDVRHFDLLPEKGWEVDLEAVEALADE 179

Query: 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239
           NT AMVIINPGNPCG+V++Y HL+++AE AR L +MV++DEVYGHLTFGS P+ PMG+F 
Sbjct: 180 NTVAMVIINPGNPCGSVYSYQHLEKVAETARMLGIMVISDEVYGHLTFGSAPFVPMGVFA 239

Query: 240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           S VPV+TLGSISKRW+VPGWR GWLVTNDPNGI Q SGI+ SIKD L+I SD PTFIQ
Sbjct: 240 STVPVLTLGSISKRWIVPGWRMGWLVTNDPNGILQDSGIVASIKDYLNISSDPPTFIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446435|ref|XP_002276464.1| PREDICTED: tyrosine aminotransferase isoform 1 [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/297 (64%), Positives = 237/297 (79%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENGA  +WGF   Q    A ++TV+  L  +I ++N  D RPV+ LG GDP+AF CFRT
Sbjct: 1   MENGAAERWGFRGNQVLDKAASITVRGVLRKVISNLNPQDRRPVITLGQGDPSAFSCFRT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
           A EAE+AIVDAVRS +F+ Y  + G+ PARRAIA+YLS DLPYKLS DDVY+T+GC QA+
Sbjct: 61  APEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVYLTVGCGQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+I+ VLARPGAN+LLPRPG+ +YE +A    +E R FDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 121 ELIIKVLARPGANILLPRPGYAFYEALAAANHLEFRRFDLLPEKVWEVDLEGVKALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGNVFT+ HL+++AE AR L ++V+ADEVYGHL FGS P+ PMG+FGS
Sbjct: 181 TVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPFVPMGVFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSGI+++I   L+I +D  +FIQ
Sbjct: 241 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNICADPTSFIQ 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143330|emb|CBI21891.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/297 (64%), Positives = 237/297 (79%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENGA  +WGF   Q    A ++TV+  L  +I ++N  D RPV+ LG GDP+AF CFRT
Sbjct: 100 MENGAAERWGFRGNQVLDKAASITVRGVLRKVISNLNPQDRRPVITLGQGDPSAFSCFRT 159

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
           A EAE+AIVDAVRS +F+ Y  + G+ PARRAIA+YLS DLPYKLS DDVY+T+GC QA+
Sbjct: 160 APEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVYLTVGCGQAI 219

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+I+ VLARPGAN+LLPRPG+ +YE +A    +E R FDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 220 ELIIKVLARPGANILLPRPGYAFYEALAAANHLEFRRFDLLPEKVWEVDLEGVKALADEN 279

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGNVFT+ HL+++AE AR L ++V+ADEVYGHL FGS P+ PMG+FGS
Sbjct: 280 TVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPFVPMGVFGS 339

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSGI+++I   L+I +D  +FIQ
Sbjct: 340 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNICADPTSFIQ 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811786|emb|CAN63727.1| hypothetical protein VITISV_034866 [Vitis vinifera]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 234/298 (78%), Gaps = 2/298 (0%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           ME G +    F+  +E   A ++T++  L  ++ ++N  D RPV+PLG+GDP+AF CFRT
Sbjct: 1   MEEGRDGV--FQGNEELDKAASITIRGVLNKVMSNLNPQDHRPVIPLGHGDPSAFSCFRT 58

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
              AEDAIVDA+RS KFN YA   GI PARRAIA++LS DLPYKLS DD+++T+GC QA+
Sbjct: 59  TPXAEDAIVDALRSRKFNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIFLTIGCSQAL 118

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           E+I+ VLARPGAN+LLPRPG+P+YE  A    +E RHFDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 119 ELIIKVLARPGANILLPRPGYPFYESHAAANHLEFRHFDLLPEKGWEVDLEGVKALADEN 178

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGN+FT+ HL+++AE AR L ++V++DEVY HL FG  PY PMG FGS
Sbjct: 179 TVAMVIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGGNPYVPMGAFGS 238

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQV 298
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSG+++SI   L+I SD  TFIQV
Sbjct: 239 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNISSDPATFIQV 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446431|ref|XP_002275047.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143327|emb|CBI21888.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/297 (63%), Positives = 232/297 (78%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT 60
           MENGA  +WGF   Q    A ++TV+  L  +I ++N  D RPV+ LG GDP+AF  FRT
Sbjct: 1   MENGAAERWGFRGNQVLHKASSITVRGVLGKVISNLNPQDRRPVITLGQGDPSAFSSFRT 60

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
           + EAE+AIVDAVRS KFN Y+ + G+  ARRAIA+YLS DLPYKLS DDVY+T+GC QA+
Sbjct: 61  SPEAEEAIVDAVRSRKFNSYSPDVGVLTARRAIAEYLSADLPYKLSPDDVYLTIGCAQAI 120

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           ++I+ VLA PGAN+LLPRPG+  YE  A    +E R FDLLPE+ WEVDL+ V+ALAD+N
Sbjct: 121 KLIIKVLALPGANILLPRPGYALYEAHAAANHLEFRRFDLLPEKGWEVDLEGVKALADEN 180

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T AMVIINPGNPCGNVFT+ HL+++AE AR L ++V+ADEVYGHL FGS PY PMG+FGS
Sbjct: 181 TVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPYVPMGVFGS 240

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           I PVITLGSISKRW+VPGWR GWLVTNDPNGI  KSG++++I   L+I +D  TFI 
Sbjct: 241 ITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGVVETIVSSLNICTDPATFIH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2154714	414	TAT7 "tyrosine aminotransferas	0.913	0.664	0.575	2e-86
TAIR|locus:2158926	420	AT5G36160 [Arabidopsis thalian	0.980	0.702	0.513	5e-83
TAIR|locus:2046056	462	SUR1 "SUPERROOT 1" [Arabidopsi	0.980	0.638	0.488	1e-82
UNIPROTKB|Q9ST02	461	naat-A "Nicotianamine aminotra	0.873	0.570	0.549	2.8e-82
UNIPROTKB|Q9ST03	551	naat-B "Nicotianamine aminotra	0.963	0.526	0.496	6.6e-81
TAIR|locus:2121407	449	AT4G28420 [Arabidopsis thalian	0.960	0.643	0.498	1.1e-80
TAIR|locus:2121382	447	AT4G28410 [Arabidopsis thalian	0.960	0.646	0.484	8.7e-79
TAIR|locus:2047441	445	TAT3 "tyrosine aminotransferas	0.973	0.658	0.484	5e-76
TAIR|locus:2128434	424	AT4G23590 [Arabidopsis thalian	0.740	0.525	0.533	5.4e-63
TAIR|locus:2128459	422	CORI3 "CORONATINE INDUCED 1" [	0.936	0.668	0.439	3e-62

TAIR|locus:2154714 TAT7 "tyrosine aminotransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 160/278 (57%), Positives = 204/278 (73%)

Query:    23 VTVKTSLASIIDSVNKNDP---RPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNC 79
             +T+K  L+ +++S+   +    + V+ LG GDPT + CFRT             S KF+ 
Sbjct:    11 ITIKGILSLLMESITTEEDEGGKRVISLGMGDPTLYSCFRTTQVSLQAVSDSLLSNKFHG 70

Query:    80 YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
             Y+   G+P ARRAIA+YLSRDLPYKLS DDV++T GC QA++V LS+LARP AN+LLPRP
Sbjct:    71 YSPTVGLPQARRAIAEYLSRDLPYKLSQDDVFITSGCTQAIDVALSMLARPRANILLPRP 130

Query:   140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
             G+P YE  A+ + +EVR+ DLLPE  WE+DLDAVEALAD+NT A+V+INPGNPCGNV++Y
Sbjct:   131 GFPIYELCAKFRHLEVRYVDLLPENGWEIDLDAVEALADENTVALVVINPGNPCGNVYSY 190

Query:   200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
              HL +IAE A+KL  +V+ADEVYGHL FGS P+ PMG+FGSIVPV+TLGS+SKRW+VPGW
Sbjct:   191 QHLMKIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWIVPGW 250

Query:   260 RFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             R GW VT DP+G F+   II+  K    I     TFIQ
Sbjct:   251 RLGWFVTTDPSGSFKDPKIIERFKKYFDILGGPATFIQ 288

GO:0005737 "cytoplasm" evidence=ISM

GO:0008483 "transaminase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IGI;IMP;IDA;TAS

GO:0010189 "vitamin E biosynthetic process" evidence=IEP;IMP

TAIR|locus:2158926 AT5G36160 [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 152/296 (51%), Positives = 213/296 (71%)

Query:     2 ENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTX 61
             ENGA+ +W F   +  + + ++T++  L ++I+ ++  D RPV+PLG+GDP+ FP FRT 
Sbjct:     3 ENGAK-RWNFGANEVVERSNSLTIRDYLNTLINCLDGGDVRPVIPLGHGDPSPFPSFRTD 61

Query:    62 XXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE 121
                        RS KFN Y+++SG+P AR+A+A+YLS DL Y++S +DV++T GC QA+E
Sbjct:    62 QAAVEAICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQISPNDVHITAGCVQAIE 121

Query:   122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181
             +++S LA PGAN+LLPRP +P Y+  A   Q+EVR+FDLLPE  W+VDLD VEALAD  T
Sbjct:   122 ILISALAIPGANILLPRPTYPMYDSRAAFCQLEVRYFDLLPENGWDVDLDGVEALADDKT 181

Query:   182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241
              A+++INP NPCGNVF+  HLQ+IAE A KL ++V+ADEVY H  FG  P+  M  F  +
Sbjct:   182 VAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAEL 241

Query:   242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             VPVI LG+ISKRW VPGWR GW+VT DP+GI + SG + ++ + +++ +D  TFIQ
Sbjct:   242 VPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQ 297

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IGI

GO:0006572 "tyrosine catabolic process" evidence=IGI

TAIR|locus:2046056 SUR1 "SUPERROOT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 144/295 (48%), Positives = 203/295 (68%)

Query:     3 NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXX 62
             NG  + W F    +   A  VT++  +  + D+  K+  + ++PLG+GDP+ +PCFRT  
Sbjct:    27 NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCI 86

Query:    63 XXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
                       RSGK N Y   +GI PARRA+ADY++RDLP+KL+ +D+++T GC Q +E+
Sbjct:    87 EAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146

Query:   123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA 182
             +   LARP AN+LLPRPG+P+Y+  A    +EVR FDLLPE+ WE+DL+ +EA+AD+NT 
Sbjct:   147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTV 206

Query:   183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242
             AMV+INP NPCGNV+++ HL+++AE ARKL +MV++DEVY    FG  P+  MG F SIV
Sbjct:   207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV 266

Query:   243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             PV+TL  ISK W+VPGW+ GW+  NDP G+F+ + ++ SIK  L +  D  T IQ
Sbjct:   267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ 321

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;RCA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080108 "S-alkylthiohydroximate lyase activity" evidence=IMP

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IMP

GO:0048830 "adventitious root development" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

UNIPROTKB|Q9ST02 naat-A "Nicotianamine aminotransferase A" [Hordeum vulgare (taxid:4513)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 145/264 (54%), Positives = 200/264 (75%)

Query:    35 SVNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIA 94
             SV ++ PRPV+PL +GDP+ FP FRT            R+G+FNCYA   G+P AR A+A
Sbjct:    71 SVEESGPRPVLPLAHGDPSVFPAFRTAVEAEDAVAAALRTGQFNCYAAGVGLPAARSAVA 130

Query:    95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP-GANVLLPRPGWPYYEGIAQRKQV 153
             ++LS+ +PYKLSADDV++T G  QA+EVI+ VLA+  GAN+LLPRPG+P YE  A   ++
Sbjct:   131 EHLSQGVPYKLSADDVFLTAGGTQAIEVIIPVLAQTAGANILLPRPGYPNYEARAAFNKL 190

Query:   154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR 213
             EVRHFDL+P++ WE+D+D++E++ADKNT AMVIINP NPCG+V++Y HL ++AE+ARKL 
Sbjct:   191 EVRHFDLIPDKGWEIDIDSLESIADKNTTAMVIINPNNPCGSVYSYDHLAKVAEVARKLG 250

Query:   214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIF 273
             ++V+ADEVYG L  GS P+ PMG+FG I PV+++GS+SK W+VPGWR GW+   DP  I 
Sbjct:   251 ILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWVAVYDPTKIL 310

Query:   274 QKSGIIDSIKDCLSIYSDIPTFIQ 297
             +K+ I  SI + L++ +D  TF+Q
Sbjct:   311 EKTKISTSITNYLNVSTDPATFVQ 334

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

UNIPROTKB|Q9ST03 naat-B "Nicotianamine aminotransferase B" [Hordeum vulgare (taxid:4513)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 146/294 (49%), Positives = 208/294 (70%)

Query:     8 KWGFEDKQEHKAAPA---VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXXXX 64
             +W F   ++   A     ++++     I  SV +  PRPV+PL +GDP+ FP FRT    
Sbjct:   131 EWNFAGAKDGVLAATGANMSIRAIRYKISASVQEKGPRPVLPLAHGDPSVFPAFRTAVEA 190

Query:    65 XXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVIL 124
                     R+G+FNCY    G+P AR A+A++LS+ +PY LSADDV++T G  QA+EVI+
Sbjct:   191 EDAVAAAVRTGQFNCYPAGVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVII 250

Query:   125 SVLARP-GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA 183
              VLA+  GAN+LLPRPG+P YE  A   ++EVRHFDL+P++ WE+D+D++E++ADKNT A
Sbjct:   251 PVLAQTAGANILLPRPGYPNYEARAAFNRLEVRHFDLIPDKGWEIDIDSLESIADKNTTA 310

Query:   184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP 243
             MVIINP NPCG+V++Y HL ++AE+A++L ++V+ADEVYG L  GS P+ PMG+FG I P
Sbjct:   311 MVIINPNNPCGSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITP 370

Query:   244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             V+++GS+SK W+VPGWR GW+   DP  I Q++ I  SI + L++ +D  TFIQ
Sbjct:   371 VLSIGSLSKSWIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQ 424

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

TAIR|locus:2121407 AT4G28420 [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 144/289 (49%), Positives = 196/289 (67%)

Query:     9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXX 68
             W F        A +VT++  +  + D  + +  +P++PL +GDP+ +PC+RT        
Sbjct:    27 WRFRGSDNAAKASSVTMRVIVYKLFDECSLDVKKPLLPLAHGDPSVYPCYRTSILVENAV 86

Query:    69 XXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA 128
                 RSGK N Y   +GI PAR+A+ADY++RDL  K+  +DV++T+GC Q +EV+L  LA
Sbjct:    87 VDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGIEVVLQSLA 146

Query:   129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188
             RP AN+LLPRP +P+YE  A    +EVR FDLLPE+ WE+DL  +EA+AD+NT AMVIIN
Sbjct:   147 RPNANILLPRPSYPHYEARAVYSGLEVRKFDLLPEKEWEIDLPGIEAMADENTVAMVIIN 206

Query:   189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248
             P NPCGNV++Y HL+++AE A+KL +MV+ DEVY    FG  P+ PMG F SI PVITLG
Sbjct:   207 PNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLG 266

Query:   249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
              ISK W+VPGWR GW+  NDP GI + +G++ SI+  L I  D  T +Q
Sbjct:   267 GISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQ 315

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2121382 AT4G28410 [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 140/289 (48%), Positives = 202/289 (69%)

Query:     9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXX 68
             W F+  +  K A +V++K +LA + D  +K+  + ++PLG+GDP+ +PCF+T        
Sbjct:    35 WRFKGNKAAKEAASVSMKGTLARLFDCCSKDVKKTILPLGHGDPSVYPCFQTSVDAEEAV 94

Query:    69 XXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA 128
                 RSG  N YA   GI PARRA+A+YL+RDLP+K+ +DD+++T+GC Q +E ++  LA
Sbjct:    95 VESLRSGAANSYAPGVGILPARRAVANYLNRDLPHKIHSDDIFMTVGCCQGIETMIHALA 154

Query:   129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188
              P AN+LLP   +P Y   A    VE+R ++LLP+ +WE+DL  VEA+AD+NT A+VI+N
Sbjct:   155 GPKANILLPTLIYPLYNSHAIHSLVEIRKYNLLPDLDWEIDLQGVEAMADENTIAVVIMN 214

Query:   189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248
             P NPCGNV+TY HL+++AE+ARKL +MV++DEVY    +G   + PMG+F SI PV+TLG
Sbjct:   215 PHNPCGNVYTYEHLKKVAEVARKLGIMVISDEVYNQTIYGENKFVPMGIFSSITPVVTLG 274

Query:   249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             SISK WLVPGWR GW+  NDP  +F+ + +++SIK+ L I  D  T +Q
Sbjct:   275 SISKGWLVPGWRIGWIAMNDPKNVFKTTRVVESIKEHLDISPDPSTILQ 323

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2047441 TAT3 "tyrosine aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 143/295 (48%), Positives = 196/295 (66%)

Query:     3 NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXX 62
             N   N W F+       A AVT++     +  +   N  + ++    G+P+A   FRT  
Sbjct:    10 NANANVWRFKGNGATSDAAAVTLRKLAFGMFKNCTMNSGKTILFPTPGEPSAHSNFRTCP 69

Query:    63 XXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
                       RSG  N YA + G+  ARRA+A+YL+ +LP KL A+DVY+T GC QA+E+
Sbjct:    70 EAEEAVAAAARSGMANSYAPSPGVFKARRAVAEYLNGELPTKLKAEDVYITGGCNQAIEI 129

Query:   123 ILSVLA-RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT 181
             ++  LA  P AN+LLPRPG+P+Y+  A    +E+R +DLLPE +WE++LD +EA AD+NT
Sbjct:   130 VIDSLAGNPSANILLPRPGYPHYDARAVYSGLEIRKYDLLPESDWEINLDGLEAAADENT 189

Query:   182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI 241
              AMVIINP NPCGNV+TY HL ++AEMARKL +M+++DEVY H+ +G  P+ PMG F SI
Sbjct:   190 VAMVIINPNNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASI 249

Query:   242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFI 296
              PVITLGSISK W+ PGWR GW+  NDPNGIF  +G++ +I+D L +    P+FI
Sbjct:   250 APVITLGSISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQ-PSFI 303

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=ISS

TAIR|locus:2128434 AT4G23590 [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 119/223 (53%), Positives = 167/223 (74%)

Query:    75 GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV 134
             G  N YA + G+P A+RA+A+YL+RDL  KL+ DDVY+T+GCKQA+E+ +S+LA+P AN+
Sbjct:    68 GTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQAIELAVSILAKPKANI 127

Query:   135 LLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194
             LLPRPG+P+    +  K +EVR ++ +PER++E+D ++V  + D+NT A+ IINP NP G
Sbjct:   128 LLPRPGFPWDMVHSIYKHLEVRRYEFIPERDFEIDFNSVREMVDENTFAIFIINPHNPNG 187

Query:   195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW 254
             N +T  HL+++A +AR+L +MVV+DEVY    FGS P+ PMG F SIVPVITLGSISK W
Sbjct:   188 NYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKGW 247

Query:   255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             +VPGWR GWL  +D NG+F+ + ++ + K+ L I S  PT IQ
Sbjct:   248 IVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQ 290

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2128459 CORI3 "CORONATINE INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 127/289 (43%), Positives = 188/289 (65%)

Query:     9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXX 68
             W F   +  K A A ++  S  S + ++     +P++P     P       T        
Sbjct:     9 WQFSGSEAAKDAAAASLG-SYTSALYALCDPHGKPILP-----PRN-EILETSNTAEKAV 61

Query:    69 XXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA 128
                   G  N YA + G+  A+ A+A+YL++ LP KL+ADDV++TLGCKQA+E+ + +LA
Sbjct:    62 VKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKLTADDVFMTLGCKQAIELAVDILA 121

Query:   129 RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN 188
             +P ANVLLP PG+P+    +  K +EVRH++ LPE+N+E+D D+V AL D+NT A+ IIN
Sbjct:   122 KPKANVLLPSPGFPWDLVRSIYKNLEVRHYNFLPEKNFEIDFDSVRALVDENTFAIFIIN 181

Query:   189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG 248
             P NP GN ++  HL+++AE+A++L++MVV+DEV+    FGS P+ PMG F SIVPV+TLG
Sbjct:   182 PHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLG 241

Query:   249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
             SISK W VPGWR GWL  +D +G+F+ + ++ + +D L I ++ PT IQ
Sbjct:   242 SISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFLQINNNPPTVIQ 290

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IEP

GO:0008483 "transaminase activity" evidence=IEA;ISS;NAS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IEP

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004121 "cystathionine beta-lyase activity" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=TAS

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN30	TAT2_ARATH	2, ., 6, ., 1, ., -	0.5566	0.9468	0.6884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	1e-161
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	1e-143
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	1e-139
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	1e-138
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	1e-120
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	2e-82
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-59
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	9e-57
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	2e-51
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	2e-41
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	6e-38
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	9e-36
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	3e-33
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	3e-29
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	3e-27
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	4e-26
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	5e-26
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	6e-26
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	1e-25
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	4e-25
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	2e-24
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	1e-22
PRK06225	380	PRK06225, PRK06225, aspartate aminotransferase; Pr	7e-22
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	4e-21
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	6e-20
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	6e-20
PRK08960	387	PRK08960, PRK08960, hypothetical protein; Provisio	8e-20
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	2e-19
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	4e-19
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	5e-19
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	6e-19
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	7e-19
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	1e-18
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	2e-18
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	3e-18
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	3e-18
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	5e-18
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	1e-17
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	3e-17
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	5e-17
PRK07550	386	PRK07550, PRK07550, hypothetical protein; Provisio	2e-16
PRK06290	410	PRK06290, PRK06290, aspartate aminotransferase; Pr	2e-16
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	2e-16
PLN02368	407	PLN02368, PLN02368, alanine transaminase	4e-16
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	2e-15
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	8e-15
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	3e-14
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	5e-14
PRK09147	396	PRK09147, PRK09147, succinyldiaminopimelate transa	7e-14
TIGR03539	357	TIGR03539, DapC_actino, succinyldiaminopimelate tr	1e-13
PRK09440	416	PRK09440, avtA, valine--pyruvate transaminase; Pro	3e-13
PRK08068	389	PRK08068, PRK08068, transaminase; Reviewed	5e-13
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	1e-12
PRK09148	405	PRK09148, PRK09148, aminotransferase; Validated	1e-12
TIGR03537	350	TIGR03537, DapC, succinyldiaminopimelate transamin	5e-12
PRK05942	394	PRK05942, PRK05942, aspartate aminotransferase; Pr	7e-12
PLN02231	534	PLN02231, PLN02231, alanine transaminase	3e-11
PRK03967	337	PRK03967, PRK03967, histidinol-phosphate aminotran	5e-11
PRK07865	364	PRK07865, PRK07865, N-succinyldiaminopimelate amin	5e-11
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	3e-10
PLN02607	447	PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl	4e-10
PRK06358	354	PRK06358, PRK06358, threonine-phosphate decarboxyl	2e-09
PRK05839	374	PRK05839, PRK05839, hypothetical protein; Provisio	5e-09
PRK05166	371	PRK05166, PRK05166, histidinol-phosphate aminotran	7e-09
COG3977	417	COG3977, COG3977, Alanine-alpha-ketoisovalerate (o	8e-09
PLN02376	496	PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl	9e-09
TIGR03542	402	TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr	1e-08
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	1e-08
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	2e-08
PRK02731	367	PRK02731, PRK02731, histidinol-phosphate aminotran	2e-08
PRK14807	351	PRK14807, PRK14807, histidinol-phosphate aminotran	5e-08
PRK03158	359	PRK03158, PRK03158, histidinol-phosphate aminotran	7e-08
PRK08636	403	PRK08636, PRK08636, aspartate aminotransferase; Pr	1e-07
PRK01533	366	PRK01533, PRK01533, histidinol-phosphate aminotran	2e-07
PLN02450	468	PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl	4e-07
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	7e-07
PRK04870	356	PRK04870, PRK04870, histidinol-phosphate aminotran	8e-07
PRK00950	361	PRK00950, PRK00950, histidinol-phosphate aminotran	8e-07
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	9e-07
PRK09275	527	PRK09275, PRK09275, aspartate aminotransferase; Pr	9e-07
PRK08056	356	PRK08056, PRK08056, threonine-phosphate decarboxyl	1e-06
PRK01688	351	PRK01688, PRK01688, histidinol-phosphate aminotran	1e-06
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	2e-06
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	2e-06
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-06
PRK07908	349	PRK07908, PRK07908, hypothetical protein; Provisio	8e-06
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	2e-05
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	8e-05
TIGR03801	521	TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla	1e-04
PRK04781	364	PRK04781, PRK04781, histidinol-phosphate aminotran	2e-04
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	2e-04
PRK08354	311	PRK08354, PRK08354, putative aminotransferase; Pro	2e-04
PRK02610	374	PRK02610, PRK02610, histidinol-phosphate aminotran	4e-04
PLN03026	380	PLN03026, PLN03026, histidinol-phosphate aminotran	5e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	0.001
PRK06425	332	PRK06425, PRK06425, histidinol-phosphate aminotran	0.002
PRK04635	354	PRK04635, PRK04635, histidinol-phosphate aminotran	0.002

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  456 bits (1175), Expect = e-161
 Identities = 185/307 (60%), Positives = 236/307 (76%), Gaps = 10/307 (3%)

Query: 1   MENGAEN--------KWGFEDKQEH-KAAPAVTVKTSLASIIDSVNKND-PRPVVPLGYG 50
           ME G           +W FE       AA A++++  L  +   V+    PRPV+PLG+G
Sbjct: 1   MEGGGGGGGGGHATARWRFERANAALAAAGALSIRAVLNRVKACVDAGGGPRPVLPLGHG 60

Query: 51  DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDV 110
           DP+AFPCFRTA EAEDA+  A+RSGK+N Y+T  G+ PARRAIA+YLSRDLPY+LS DD+
Sbjct: 61  DPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDI 120

Query: 111 YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL 170
           Y+T GC QA+E+I+SVLA+PGAN+LLPRPG+P YE  A    +EVRHFDLLPER WEVDL
Sbjct: 121 YLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDL 180

Query: 171 DAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI 230
           + VEALAD+NT AMVIINP NPCG+V++Y HL +IAE ARKL ++V+ADEVY HLTFGS 
Sbjct: 181 EGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK 240

Query: 231 PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYS 290
           P+ PMG+FG + PV+TLGSISKRW+VPGWR GW+ T DPNGI +++ ++DSI++ L+I +
Sbjct: 241 PFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNIST 300

Query: 291 DIPTFIQ 297
           D  TF+Q
Sbjct: 301 DPATFVQ 307

Length = 430

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  409 bits (1052), Expect = e-143
 Identities = 176/277 (63%), Positives = 215/277 (77%)

Query: 21  PAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCY 80
           P+ ++  ++  + ++ N++D R  +  G+GDP+ F CFRT   AEDAIV+AVRS KFN Y
Sbjct: 11  PSYSIDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSY 70

Query: 81  ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG 140
           A   GI PARRAIADYLS DLPY+LS DDVY+TLGCK A E+I+ VLARP AN+LLPRPG
Sbjct: 71  APTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPG 130

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200
           +P  E  A    +E+RHFDLLPE+ WEVDLDAVEA+AD+NT AMVIINPGNPCG+V++Y 
Sbjct: 131 FPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYE 190

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260
           HL +IAE ARKL ++V+ADEVYGH+ FGS P+ PMGLF SIVPVITLGSISKRW++PGW 
Sbjct: 191 HLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWG 250

Query: 261 FGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
            GWLVT DP+G+ Q   I DSIK  L+     PTFIQ
Sbjct: 251 LGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQ 287

Length = 409

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  399 bits (1028), Expect = e-139
 Identities = 143/273 (52%), Positives = 200/273 (73%), Gaps = 3/273 (1%)

Query: 27  TSLASIIDS--VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS 84
             + +I+D+  V  N  +PV+PL +GDP+ F   RT  EAE+A+ DA+RSGKFN YA + 
Sbjct: 14  NPIRAIVDNLKVKPNPEKPVIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSV 73

Query: 85  GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY 144
           G   AR A+A+YLS DLP KL+ADDV +T GC QA+E+ +  LA PGAN+L+PRPG+P Y
Sbjct: 74  GALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLY 133

Query: 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204
           +  A    +EVR +DLLPE++WE+DLD +E+LAD+ T A+V+INP NPCG+VF+  HLQ+
Sbjct: 134 DTRAAFSGLEVRLYDLLPEKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQK 193

Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264
           IAE+A KL + ++ADE+YGH+ FG  P+ PM  F SIVPV++LG ISKRW+VPGWR GW+
Sbjct: 194 IAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWI 253

Query: 265 VTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           + +DP+GIF+ + ++  +K+ L       T +Q
Sbjct: 254 IIHDPHGIFRDT-VLQGLKNLLQRILGPATIVQ 285

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score =  396 bits (1018), Expect = e-138
 Identities = 175/298 (58%), Positives = 226/298 (75%), Gaps = 13/298 (4%)

Query: 1   MENGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSV-NKNDPRPVVPLGYGDPTAFPCFR 59
           MENGA+                +T+K  L+ +++S+ ++ + + V+ LG GDPTA+ CF 
Sbjct: 1   MENGADT------------TKTITIKGILSLLMESIDDEENGKRVISLGMGDPTAYSCFH 48

Query: 60  TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119
           T   A++A+VDA++S KFN YA   G+P ARRAIA+YLSRDLPYKLS DDV++T GC QA
Sbjct: 49  TTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108

Query: 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK 179
           ++V LS+LARPGAN+LLPRPG+P YE  A  + +EVR+ DLLPE+ WEVDLDAVEALAD+
Sbjct: 109 IDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ 168

Query: 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239
           NT A+VIINPGNPCGNV++Y HL++IAE A KL+++V+ADEVYGHL FGS P+ PMG+FG
Sbjct: 169 NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG 228

Query: 240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           SIVPV+TLGS+SKRW+VPGWR GW VT DP+G F+   I++ IK    I     TFIQ
Sbjct: 229 SIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQ 286

Length = 409

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score =  352 bits (903), Expect = e-120
 Identities = 151/295 (51%), Positives = 213/295 (72%)

Query: 3   NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAV 62
           NG  + W F    +   A  VT++  +  + D+  K+  + ++PLG+GDP+ +PCFRT +
Sbjct: 27  NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCI 86

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
           EAEDA+VD +RSGK N Y   +GI PARRA+ADY++RDLP+KL+ +D+++T GC Q +E+
Sbjct: 87  EAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA 182
           +   LARP AN+LLPRPG+P+Y+  A    +EVR FDLLPE+ WE+DL+ +EA+AD+NT 
Sbjct: 147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTV 206

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242
           AMV+INP NPCGNV+++ HL+++AE ARKL +MV++DEVY    FG  P+  MG F SIV
Sbjct: 207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV 266

Query: 243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           PV+TL  ISK W+VPGW+ GW+  NDP G+F+ + ++ SIK  L +  D  T IQ
Sbjct: 267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQ 321

Length = 462

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score =  253 bits (649), Expect = 2e-82
 Identities = 105/255 (41%), Positives = 160/255 (62%), Gaps = 5/255 (1%)

Query: 31  SIIDS--VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP 88
           +I+D+  V  N  +PV+ L  GDPT F    T  E   A+ D++ SGK+N YA   G   
Sbjct: 18  AIVDNMKVKPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALS 77

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA 148
           AR AIA Y   +    + ADDV +  GC  A+E+ ++ LA  G N+L+PRPG+P Y  +A
Sbjct: 78  AREAIASY-YHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLA 136

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +   +EV+ ++LLP+++WE+DL  +E+L D+ TAA+V+ NP NPCG+VF+  HL+EI  +
Sbjct: 137 ESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAV 196

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
           A +  + ++ADE+YG + F    + P+    S VP+++ G ++KRWLVPGWR GW++ +D
Sbjct: 197 AERQCLPIIADEIYGDMVFSGATFEPVASLSSNVPILSCGGLAKRWLVPGWRLGWIIIHD 256

Query: 269 PNGIFQKSGIIDSIK 283
             GI     I D + 
Sbjct: 257 RRGIL--RDIRDGLV 269

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  193 bits (492), Expect = 2e-59
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 45  VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK 104
           + L  G+P     F    E  +A+  A        Y  + G+P  R AIA++L R     
Sbjct: 1   IDLSIGEPD----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVD 56

Query: 105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER 164
           +  +++ VT G ++A+ ++L  L  PG  VL+P P +P YE  A+    EV    L  E 
Sbjct: 57  VPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEG 116

Query: 165 NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH 224
            + +DL+ +EA     T  + + NP NP G V +   L+E+AE+A+K  +++++DE Y  
Sbjct: 117 GFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE 176

Query: 225 LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           L +   P   + L  +   VI L S SK + +PG R G+L+    
Sbjct: 177 LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE 221

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score =  188 bits (478), Expect = 9e-57
 Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 6/237 (2%)

Query: 41  PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
           P+ ++ L  GDPT      T      A+V+AV S + N Y    G P AR A+A Y    
Sbjct: 32  PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNS 91

Query: 101 LPYK------LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE 154
             +K      +  D+V +  G   A+ + L+ L   G N+L+P PG+P+YE + +   +E
Sbjct: 92  FVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIE 151

Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +R ++  PE++WE DLD +  L D  T A+++ NP NPCG+ F+  H+++I  +  +LR+
Sbjct: 152 MRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRL 211

Query: 215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNG 271
            +++DE+Y  + F    +T +  F + VP + LG  +K  +VPGWR GWL+  DP+G
Sbjct: 212 PLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHG 268

Length = 412

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  173 bits (441), Expect = 2e-51
 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 18/263 (6%)

Query: 41  PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
              V+ L  G+P     F T     +A ++A+  G  + Y  ++GIP  R AIA+   R 
Sbjct: 27  KEDVIDLSIGEPD----FPTPEHIIEAAIEALEEGGTH-YTPSAGIPELREAIAEKYKRR 81

Query: 101 LPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFD 159
               +  + ++ VT G K+A+ +    L  PG  VL+P PG+P YE   +    +     
Sbjct: 82  YGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVP 141

Query: 160 LLPERN-WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
           L  E N ++ DL+ +EA     T A+++ +P NP G V++   L+ I E+AR+  +++++
Sbjct: 142 LDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIIS 201

Query: 219 DEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277
           DE+Y  L + G+   + + L G+    IT+ S SK + + GWR GW+V            
Sbjct: 202 DEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-------E 254

Query: 278 IIDSIKDCLSIYSDI--PTFIQV 298
           +I +++   S Y     PT  Q 
Sbjct: 255 LIAALRKLKS-YLTSCAPTPAQY 276

Length = 393

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  147 bits (373), Expect = 2e-41
 Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 19/232 (8%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           R V+ LG G+P  F       EA  AI +A+  GK   Y   +GIP  R AIA  L RD 
Sbjct: 31  RDVISLGAGEPD-FDTPEHIKEA--AI-EALDDGK-TKYTPAAGIPELREAIAAKLKRDN 85

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHF 158
                   V VT G KQA+      L  PG  V++P P W  Y  +   A    V V   
Sbjct: 86  GLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFV--- 142

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
               E  +++ ++ +EA     T A+++ +P NP G V++   L+ IA++A +  + V++
Sbjct: 143 PTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202

Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLV 265
           DE+Y  L +    +T +    S+ P      IT+   SK + + GWR G+  
Sbjct: 203 DEIYEKLVYDGAEFTSI---ASLSPELRDRTITVNGFSKAYAMTGWRLGYAA 251

Length = 393

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  137 bits (346), Expect = 6e-38
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 10/235 (4%)

Query: 42  RPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
              + LG  +            +AE    DA+  G  N Y    G+P  R A+A +L R 
Sbjct: 1   TDKINLGSNEYLGDSGTLPAVAKAE---KDALAGGTRNLYGPTDGLPELREALAKFLGRS 57

Query: 101 LPYKLSADD-VYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHF 158
              KL  +  V    G    +E ++ +L   PG  +L+P P +P Y  I +    EV  +
Sbjct: 58  PVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRY 117

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVII---NPGNPCGNVFTYHHLQEIAEMARKLRVM 215
            L    ++ +D DA+EA   + T    ++   +P NP G V T   L+++ ++A++  ++
Sbjct: 118 PLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNIL 177

Query: 216 VVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           ++ DE Y    FGS+         +    ++ +GS SK + + GWR G+++ N  
Sbjct: 178 LLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA 232

Length = 357

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score =  132 bits (333), Expect = 9e-36
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 3/228 (1%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ L  GDP  F  F+     ++A   A++ G  N Y  + G+P  R AI     R    
Sbjct: 32  VIRLNIGDPVKFD-FQPPEHMKEAYCRAIKEGH-NYYGPSEGLPELREAIVKREKRKNGV 89

Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
            ++ DDV VT    +A+++I   L  PG  +L+P P +P Y G+ +        +  + E
Sbjct: 90  DITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEE 149

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
             W+ D+D +     + T A+ +INP NP G ++    L+EI ++A +  + V++DE+Y 
Sbjct: 150 EGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD 209

Query: 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNG 271
            +T+     +P  L    VPVI +  +SK +   GWR G++   DP G
Sbjct: 210 LMTYEGKHVSPGSLTKD-VPVIVMNGLSKVYFATGWRLGYIYFVDPEG 256

Length = 398

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score =  125 bits (315), Expect = 3e-33
 Identities = 65/209 (31%), Positives = 88/209 (42%), Gaps = 16/209 (7%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILS 125
           DA   A+  G    Y  N GIP  R A+A Y+SR        + + VT    QA+ +   
Sbjct: 44  DAAAAALADG-ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQ 102

Query: 126 VLARPGANVLLPRPGWPYYEGI-----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKN 180
            L  PG  V+   P WP          A+   V +          W +DLD + A     
Sbjct: 103 ALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDF----GGGGWTLDLDRLLAAITPR 158

Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           T A+ I +P NP G   +   L+ I    R+  + +VADEVY  L +      P   F  
Sbjct: 159 TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPS--FLD 216

Query: 241 IVP----VITLGSISKRWLVPGWRFGWLV 265
           I      +I + S SK W + GWR GWLV
Sbjct: 217 IAEPDDRIIFVNSFSKNWAMTGWRLGWLV 245

Length = 382

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score =  114 bits (288), Expect = 3e-29
 Identities = 81/249 (32%), Positives = 113/249 (45%), Gaps = 35/249 (14%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           ++LA    +VN         LG G    FP      E  +A  +A+  G  N Y    GI
Sbjct: 18  SALAVRTGAVN---------LGQG----FPDEDGPPEMLEAAQEAIAGGV-NQYPPGPGI 63

Query: 87  PPARRAIADYLSRDLPYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY 143
           P  R AIA    R   Y L  D   +V VT+G  +A+   +  L  PG  VLL  P   Y
Sbjct: 64  PELRAAIAAQRRRR--YGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEP---Y 118

Query: 144 YEGIA--------QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN 195
           Y+  A         R  V +        R + +DLDA+ A     T A+++ +P NP G 
Sbjct: 119 YDSYAAVIAMAGAHRVPVPLVP----DGRGFALDLDALRAAVTPRTRALIVNSPHNPTGT 174

Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM-GLFGSIVPVITLGSISKRW 254
           V T   L  IAE+A +  ++V+ DEVY HL F    + P+  L G     +T+ S +K +
Sbjct: 175 VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTF 234

Query: 255 LVPGWRFGW 263
            V GW+ GW
Sbjct: 235 NVTGWKIGW 243

Length = 387

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score =  110 bits (276), Expect = 3e-27
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPR 138
           Y  ++G P  R+A+A ++ R         D+++T G    ++++L +L   P   V++P 
Sbjct: 111 YTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPI 170

Query: 139 PGWPYYEG-IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGN 191
           P +P Y   I      +V  + L  E+ W +D + +E   ++         A+V+INPGN
Sbjct: 171 PQYPLYSAAITLLGGKQV-PYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGN 229

Query: 192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
           P G V T   ++EI +   +  ++++ADEVY
Sbjct: 230 PTGQVLTRDVMEEIIKFCYEKGIVLMADEVY 260

Length = 481

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score =  106 bits (267), Expect = 4e-26
 Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 13/244 (5%)

Query: 28  SLASIIDSVNKNDPRPVVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSG 85
            L    D     D   V+    G  DP+ FP       A   ++    +     Y   +G
Sbjct: 75  ELLKPSDPELLEDDPSVIDFAGGLPDPSLFP-LEALRRALARVLRNYGASLALQYGPTAG 133

Query: 86  IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
           +P  R AIA YL          + + +T G +QA++++L +L  PG  VL+  P +P   
Sbjct: 134 LPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL 193

Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP--GNPCGNVFTYHHLQ 203
              +     V    +  +    +D +A+E    +     V + P   NP G   +    +
Sbjct: 194 QALEALGARVIPVPVDED---GIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRK 250

Query: 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRF 261
            +  +A K  V+++ D+ YG L +      P  L     P  VI LGS SK  L PG R 
Sbjct: 251 ALLALAEKYDVLIIEDDYYGELRYD--GPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRL 307

Query: 262 GWLV 265
           G++V
Sbjct: 308 GYVV 311

Length = 459

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score =  106 bits (266), Expect = 5e-26
 Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 21/229 (9%)

Query: 50  GDPTAFPCFRTAVEAEDAIV-DAVR-----SGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           G+P  F       EA D I+ D +R      G    Y+ + G+  AR+AI  Y  +    
Sbjct: 41  GNPAPF-----GFEAPDEILRDVIRNLPTAQG----YSDSKGLFSARKAIMQYYQQKGIP 91

Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQVEVRHFDL 160
            +  DD+Y+  G  + + + +  L   G  VL+P P +P +     ++  K V   H+  
Sbjct: 92  DVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPV---HYLC 148

Query: 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
             E  W  DLD + +     T A+VIINP NP G V++   L+EI E+AR+  +++ ADE
Sbjct: 149 DEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADE 208

Query: 221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +Y  + +    +  +      +  +T   +SK + V G+R GW+V + P
Sbjct: 209 IYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGP 257

Length = 404

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score =  106 bits (267), Expect = 6e-26
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC--YATNSGIPPARRAIADYL-SRD 100
           ++ L  G+P  F  FRT     D +V  +     +   Y+ + G+  AR+AI  Y   + 
Sbjct: 148 ILKLNIGNPAPFG-FRTP----DEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKG 202

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160
           LP  +  DD+Y   G  + + + +S L   G  VL+P P +P +            H+  
Sbjct: 203 LP-NVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRC 261

Query: 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
             +  W  D+D + +     T A+VIINP NP G ++    LQ+I ++AR+ ++++ +DE
Sbjct: 262 DEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDE 321

Query: 221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           +Y  L    + +T +      +  +T   +SK  ++ G+R GW++
Sbjct: 322 IYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMI 366

Length = 517

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score =  104 bits (262), Expect = 1e-25
 Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 5/209 (2%)

Query: 62  VEAEDAIVDAVRSGKFNC--YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA 119
           ++  +   +A+++       Y+ + GIP  R A A Y  +     +  D++ +T G  +A
Sbjct: 42  IKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEA 100

Query: 120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV-DLDAVEALAD 178
           +   +  +  PG  +L+P P +  Y G A    V++       E  + +   + +E L  
Sbjct: 101 ILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160

Query: 179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF 238
             T A++I NPGNP G V+T   L+ +AE+A+K  + +++DEVY    +  + YT     
Sbjct: 161 PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSL 220

Query: 239 GSIVP-VITLGSISKRWLVPGWRFGWLVT 266
             +   VI + S+SKR+   G R G L++
Sbjct: 221 EGLEDRVIIIDSVSKRYSACGARIGCLIS 249

Length = 397

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score =  103 bits (258), Expect = 4e-25
 Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 47  LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS 106
           LG G    FP F      ++A + A+R GK N YA   G+P    AIA+   +D    + 
Sbjct: 59  LGQG----FPNFDGPDFVKEAAIQAIRDGK-NQYARGFGVPELNSAIAERFKKDTGLVVD 113

Query: 107 AD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN 165
            + +V VT GC +A+   +  L  PG  V+L  P +  YE        +++   L P  +
Sbjct: 114 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP-D 172

Query: 166 WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL 225
           + V  D ++A     T A++I  P NP G +FT   L+ IA + ++  V+   DEVY  L
Sbjct: 173 FAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKL 232

Query: 226 TFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
            F     +   L G     +T+ S+ K + + GW+ GW +
Sbjct: 233 AFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 272

Length = 413

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score =  101 bits (253), Expect = 2e-24
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 12/207 (5%)

Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y  + G       I  Y S++       +++  T+G    + + L  +  PG  V++  P
Sbjct: 62  YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEP 121

Query: 140 GW-PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198
            + PY + I       +   +   E  +++++  +EAL    T A+++ +P NP G VF+
Sbjct: 122 YFTPYKDQIEMVGGKPI-ILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFS 180

Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVP 257
              L+EIA++A +  + +++DEVY   +F    + PM     +    IT GS SK + + 
Sbjct: 181 KETLEEIAKIAIEYDLFIISDEVYDGFSF-YEDFVPMATLAGMPERTITFGSFSKDFAMT 239

Query: 258 GWRFGWLVTNDPNGIFQKSGIIDSIKD 284
           GWR G+++  D         II++ K 
Sbjct: 240 GWRIGYVIAPD--------YIIETAKI 258

Length = 384

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ LG G+P     F T     +A + ++  G +  Y  N+G+   R+ IA YL +    
Sbjct: 22  VISLGVGEPD----FVTPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAV 76

Query: 104 KLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHFD 159
               +D + VT+G  QA++V +  +  PG  VL+  P +  Y  +   A    V V    
Sbjct: 77  SYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPV-ATT 135

Query: 160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD 219
           L  E  ++V    +EA     T A+++ +P NP G V     L+EIA +  K  ++V++D
Sbjct: 136 L--ENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSD 193

Query: 220 EVYGHLTFGSIPYTPMG-LFGSIVPVITLGSISKRWLVPGWRFGW 263
           E+Y  LT+    YT    + G     I +   SK + + GWR G+
Sbjct: 194 EIYAELTYDE-AYTSFASIKGMRERTILISGFSKGFAMTGWRLGF 237

Length = 378

>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional

 Score = 94.0 bits (234), Expect = 7e-22
 Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 17/207 (8%)

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
           E  +A++  +  G++  Y    G P  R  I   L       L  D+  +T G  +++ +
Sbjct: 45  EVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG------LDDDEALITAGATESLYL 98

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL-PERNWEVDLDAVEALADKNT 181
           ++     PG N + P PG+   +  A R   EV    +   E N+++  + V+   D+NT
Sbjct: 99  VMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENT 158

Query: 182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP---YTPMGLF 238
             + +I+P NP G+ +T   ++E AE+AR     ++ D  Y            Y P    
Sbjct: 159 RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH-- 216

Query: 239 GSIVPVITLGSISKRWLVPGWRFGWLV 265
                 +T  S SK + + G R G +V
Sbjct: 217 -----TVTSYSFSKIFGMAGLRIGAVV 238

Length = 380

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 91.9 bits (228), Expect = 4e-21
 Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 17/257 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ LG G+P     F T    ++A   A+  G +  Y  N+GIP  R AIA+Y  +    
Sbjct: 35  VISLGIGEPD----FDTPKNIKEAAKRALDEG-WTHYTPNAGIPELREAIAEYYKKFYGV 89

Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
            +  D+V VT G  +A  +    L   G  V++P P +  Y   A+  + +     L  E
Sbjct: 90  DVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREE 149

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
             ++ D D +  L  K T  +VI  P NP G        + IA++A    + +++DE Y 
Sbjct: 150 NEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE 209

Query: 224 HLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS 281
           H  +    + PM  +    P   I   S SK + + GWR G+++   P  +     I D 
Sbjct: 210 HFLYEGAKHYPMIKYA---PDNTILANSFSKTFAMTGWRLGFVIA--PEQV-----IKDM 259

Query: 282 IKDCLSIYSDIPTFIQV 298
           IK    I  ++ +F+Q+
Sbjct: 260 IKLHAYIIGNVASFVQI 276

Length = 391

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 88.5 bits (220), Expect = 6e-20
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 21/223 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117
           F T  E  +A+ + V  G F  Y   S    A  AIA +  +   +++  + +    G  
Sbjct: 37  FPTPPEIIEALRERVDHGVFG-YPYGSDELYA--AIAHWFKQRHQWEIKPEWIVFVPGVV 93

Query: 118 QAVEVILSVLARPGANVLLPRPGW-PYYEGIA--QRKQVEVRHFDLLPERN--WEVDLDA 172
             + + +  L +PG  V++  P + P+Y  I    RK +E      L E +  +E+D DA
Sbjct: 94  PGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENP----LVEDDGRYEIDFDA 149

Query: 173 VE-ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           +E A  D+     ++ NP NP G V+T   L++IAE+  +  V V++DE++  L  G   
Sbjct: 150 LEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHK 209

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDP 269
           + P   F S+        ITL S SK + + G +  +++ ++ 
Sbjct: 210 HIP---FASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR 249

Length = 388

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 88.7 bits (221), Expect = 6e-20
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 19/200 (9%)

Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y  N+G P  R AIA+ L+R     L+AD + +T G   A+ V L  +  PG  V++  P
Sbjct: 69  YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAP 128

Query: 140 GWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNV 196
            +  Y         K V V          ++ DLDA+EA     T A++I +P NP G V
Sbjct: 129 YFVEYRFYVDNHGGKLVVV----PTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVV 184

Query: 197 FTYHHLQEIAEMARKLR------VMVVADEVYGHLTFGSI--PYTPMGLFGSIVPVITLG 248
           ++   L+ +A +  +        + +++DE Y  + +     PY    +F      I + 
Sbjct: 185 YSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPY----IFKYYDNSIVVY 240

Query: 249 SISKRWLVPGWRFGWLVTND 268
           S SK   +PG R G++  N 
Sbjct: 241 SFSKSLSLPGERIGYIAVNP 260

Length = 394

>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional

 Score = 88.2 bits (219), Expect = 8e-20
 Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 28/234 (11%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
             V+ L  G+P  F      V A  A   A+ +G    Y    G+P  R AIA + ++  
Sbjct: 32  HDVIHLEIGEPD-FTTAEPIVAAGQA---ALAAGHTR-YTAARGLPALREAIAGFYAQRY 86

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-------YYEGIAQRKQVE 154
              +  + + VT G   A+ +  S+L  PG + LL  PG+P         EG AQ   V 
Sbjct: 87  GVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVG 146

Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
                  P+  +++    VE   + +T   ++ +P NP G + +     E+A +++ LR 
Sbjct: 147 -------PDSRYQLTPALVERHWNADTVGALVASPANPTGTLLS---RDELAALSQALRA 196

Query: 215 ---MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
               +V DE+Y  LT+G    + + +         L S SK + + GWR GWLV
Sbjct: 197 RGGHLVVDEIYHGLTYGVDAASVLEVDDDAF---VLNSFSKYFGMTGWRLGWLV 247

Length = 387

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 24/213 (11%)

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSR--DLPYKLSADDVYVTLGCKQAV 120
           EA    +DA +S     Y   +G+   R+A AD++    +L Y    +++ VT+G  +A+
Sbjct: 50  EAAKRAIDANQSH----YTGMAGLLELRQAAADFVKEKYNLDYA-PENEILVTIGATEAL 104

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEV-------RHFDLLPERNWEVDLDAV 173
              L+ +  PG  VLLP P +P YE I      E+         F L PE      L+  
Sbjct: 105 SASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEM-----LEKA 159

Query: 174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT 233
                    A+++  P NP G  ++   ++ +A++ +K  + V++DEVY  LT+   P+ 
Sbjct: 160 ILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHV 219

Query: 234 PMGLFGSIVP--VITLGSISKRWLVPGWRFGWL 264
            +  +   +P   I +  +SK   + GWR G +
Sbjct: 220 SIAEY---LPDQTILINGLSKSHAMTGWRIGLI 249

Length = 391

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 62  VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAV 120
            EA +A+ + + + + + Y    GIPP   AI   L +D   +L+ +  + VT G   A 
Sbjct: 43  PEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF 102

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADK 179
              +  +  PG  ++L  P   YY        +      L+P + N+++  +A+E     
Sbjct: 103 MNAILAITDPGDEIILNTP---YYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP 159

Query: 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMGLF 238
            T A+V I+P NP G V+    L+ + ++  +  +  ++DE Y + T+  +  ++P  + 
Sbjct: 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIP 219

Query: 239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI 288
           GS    I+L S+SK +    WR G++V   P  + +    I  I+D + I
Sbjct: 220 GSGNHTISLYSLSKAYGFASWRIGYMVI--PIHLLEA---IKKIQDTILI 264

Length = 389

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 85.6 bits (212), Expect = 5e-19
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 85  GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY 144
           G    R AIAD       +      V  T G  +A+ ++L+ L RPG  V++  P +   
Sbjct: 52  GGEGLRAAIADRWRGGDAHV-----VMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSL 106

Query: 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204
             +A     EVR + LL  R +  DLDA+ AL    T A+V+  P NP G   T   L E
Sbjct: 107 SHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDE 166

Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
           + E A +   +++ D  +  L   + P   P  L+     VI+ G++SK + +PG R GW
Sbjct: 167 LLERAARSGAVLLWDNAFADLVHDAPPLPDPSALYDR---VISFGTLSKAFGLPGLRVGW 223

Query: 264 LV 265
            V
Sbjct: 224 CV 225

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 85.8 bits (213), Expect = 6e-19
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD---DVYVTLGCKQAVEV 122
            A  DA+  G  N Y    G+P  R+A+A + +R     L  D   +V VT G  +A+  
Sbjct: 46  RAAADALLDG-SNQYPPMMGLPELRQAVAAHYARF--QGLDLDPETEVMVTSGATEALAA 102

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA 182
            L  L  PG  V+L +P +  Y  + +R     R   L P   W +   A+ A     T 
Sbjct: 103 ALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPH-WRLPRAALAAAFSPRTK 161

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSI 241
           A+++ NP NP G VF    L  +AE  ++   + + DEV+ H+ F    + P M L G  
Sbjct: 162 AVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMR 221

Query: 242 VPVITLGSISKRWLVPGWRFGWLV 265
              + +GS  K + + GW+ G++ 
Sbjct: 222 ERTVKIGSAGKIFSLTGWKVGFVC 245

Length = 387

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 28/270 (10%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ LG GDP   P  +  VEA   +  A  + + + Y +  G+   R+A+AD+  R    
Sbjct: 31  VISLGIGDPD-LPTPKHIVEA---LCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGV 86

Query: 104 KLSADDVYVTL-GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162
           +L  +   ++L G K+ +  I      PG  VL+P PG+P Y         E     L  
Sbjct: 87  ELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKE 146

Query: 163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
           E  +  D DA+     K    M I  P NP G V      +E+ E A++  ++V  D  Y
Sbjct: 147 ENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAY 206

Query: 223 GHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV-------------TND 268
             +TF G    + + + G+    I   S+SK + + GWR G  V             TN 
Sbjct: 207 SEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNV 266

Query: 269 PNGIF---QKSGII------DSIKDCLSIY 289
            +G+F   Q + I       D +K+   IY
Sbjct: 267 DSGVFQAIQYAAIAALNGPQDVVKEIRKIY 296

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 65/239 (27%), Positives = 102/239 (42%), Gaps = 34/239 (14%)

Query: 40  DPRPVVPLGYGDP--TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
             R ++ +G G+P  TA      A         A+R G    Y +  G+ P R AIA + 
Sbjct: 28  AGRDIIHMGIGEPDFTAPEPVVEAAAR------ALRRGVTQ-YTSALGLAPLREAIAAWY 80

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
           +R     ++ + + VT G   A+ +    L   G  VL+P P +P             RH
Sbjct: 81  ARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCN-----------RH 129

Query: 158 F--------DLLP---ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIA 206
           F         L+P      +++    VEA   + T  +++ +P NP G       L+ I 
Sbjct: 130 FVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIV 189

Query: 207 EMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           E  R      + DE+Y  L++ + P + + L      VIT+ S SK + + GWR GWLV
Sbjct: 190 EAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDD---VITINSFSKYFNMTGWRLGWLV 245

Length = 388

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 30/242 (12%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           R +V L  G+P     F T    + A V A+  G+   Y   +G P  R+AI   L R  
Sbjct: 33  RSIVDLTVGEPD----FDTPDHIKQAAVAAIERGETK-YTLVNGTPALRKAIIAKLERRN 87

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA---QRKQVEVR-- 156
               + +++ V  G KQA+ + L      G  V++P P W  Y  +        V V   
Sbjct: 88  GLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACP 147

Query: 157 ---HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAE-MARKL 212
               F L PE        A+EA     T  +++  P NP G V++   L+ +A+ + R  
Sbjct: 148 EEQGFKLTPE--------ALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHP 199

Query: 213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTN 267
            V+V+ D++Y H+ F      P     +  P     V+    +SK + + GWR G+    
Sbjct: 200 HVLVLTDDIYDHIRFDD---EPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGP 256

Query: 268 DP 269
             
Sbjct: 257 AD 258

Length = 402

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILS 125
           + + + V   K   Y    G+   R  +A+  ++    +++ DD+    G   A+  I  
Sbjct: 55  EIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG 114

Query: 126 VLARPGANVLLPRPGWP-YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN--TA 182
           +L R  A V+ P P +  +    A         + L PE NW  DLD +E     N   A
Sbjct: 115 LL-RREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIA 173

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV 242
            +++INP NP G V+    L+EI ++AR+  + ++ DE+Y ++ +      P+      V
Sbjct: 174 GILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDV 233

Query: 243 PVITLGSISKRWLVPGWRFGWL-VTN-DPNGIFQKSGIIDSI 282
           P I L  ISK    PG R GW+ V N D + +F+K   I+SI
Sbjct: 234 PGIALKGISKELPWPGSRCGWIEVYNADKDEVFKK--YINSI 273

Length = 433

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 77  FNCYATNSGIPPARRAIADYLSR--DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV 134
           +  Y  N+G+   R+A  +++    DL Y     ++ VT+G  +A+++    +  PG  V
Sbjct: 58  YTSYTHNAGLLELRKAACNFVKDKYDLHYS-PESEIIVTIGASEAIDIAFRTILEPGTEV 116

Query: 135 LLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194
           +LP P +P YE I +    +    D      + +  +A+E    + T  +V+  P NP G
Sbjct: 117 ILPAPIYPGYEPIIRLCGAKPVFIDTRST-GFRLTAEALENAITEKTRCVVLPYPSNPTG 175

Query: 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG----SIPYTPMGLFGSIVPVITLGSI 250
              +   LQ+IA++ +   + V++DE+Y  L +     SI + P     +IV    +  +
Sbjct: 176 VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIV----INGL 231

Query: 251 SKRWLVPGWRFGWL 264
           SK   + GWR G+L
Sbjct: 232 SKSHSMTGWRIGFL 245

Length = 387

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA 148
            R A+A+Y        +  ++V V  G  + +E+++     PG  VL+P P +  YE  A
Sbjct: 62  LRAALAEYYG-----VVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAA 116

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           Q    EV      P + + +DLDA+ A     T  + + NP NP G +     L+ + E 
Sbjct: 117 QLAGAEVVKV---PLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEA 173

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
             +   +VV DE Y    F       +  +     +I L + SK + + G R G+ + N
Sbjct: 174 LPE-GGLVVIDEAYIE--FSPESSLELLKYPP--NLIVLRTFSKAFGLAGLRVGYAIAN 227

Length = 356

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 17/206 (8%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILS 125
           +A    +   K   Y    G P  + A+A      L   +  +++  T G   A  ++L 
Sbjct: 45  EAFYQELGQKKLT-YGWIEGSPEFKEAVAS-----LYQNVKPENILQTNGATGANFLVLY 98

Query: 126 VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV 185
            L  PG +V+   P +     I +    EV ++ L  E  W  DLD +  L   NT  + 
Sbjct: 99  ALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLIC 158

Query: 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV- 244
           I N  NP G +    +L+EI E+AR +   V++DEVY          TP     SI  + 
Sbjct: 159 INNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY--RPLDEDGSTP-----SIADLY 211

Query: 245 ---ITLGSISKRWLVPGWRFGWLVTN 267
              I+  S+SK + +PG R GW+  N
Sbjct: 212 EKGISTNSMSKTYSLPGIRVGWIAAN 237

Length = 373

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           ++A+ADY      Y +  + + +  G  + +E+++     PG  VL+P P +  YE  A+
Sbjct: 60  KQALADY------YGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK 113

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
               EV    L    + ++DL+ +    D     + + +P NP GN+ +   ++ + E  
Sbjct: 114 IHGAEVVKVPLDE--DGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT 171

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
            +   +VV DE YG   F   P + + L      +I L ++SK + + G R G+ + N 
Sbjct: 172 PE-DALVVVDEAYGE--FSGEP-STLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA 226

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 26/250 (10%)

Query: 29  LASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRS--GKFNCYATNSG 85
           LA+++  V     +P + L  G+P    P F         +++A+R      + Y T  G
Sbjct: 15  LAALLAGVTPPASKPPIALSIGEPKHPTPAF---------VLEALRENLHGLSTYPTTKG 65

Query: 86  IPPARRAIADYLSR--DLPYKLSADD-VYVTLGCKQAVEVILSVLARPG--ANVLLPRPG 140
           +P  R+AIA +L R  DLP  +  +  V    G ++A+      +  PG    V++P P 
Sbjct: 66  LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPF 125

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200
           +  YEG A     E    +   E  +  D DAV     +    + + +PGNP G V +  
Sbjct: 126 YQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLD 185

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--------GSIVPVITLGSISK 252
            L+++ E+A +   ++ +DE Y  L F      P GL               +   S+SK
Sbjct: 186 TLKKLIELADQYGFIIASDECYSELYFDE-GNPPAGLLQAAAQLGRDDFRRCLVFHSLSK 244

Query: 253 RWLVPGWRFG 262
           R  +PG R G
Sbjct: 245 RSNLPGLRSG 254

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 28/234 (11%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILS 125
            A+ +A      + Y    G+P  R A A + SR     +S + V++T GC QA    + 
Sbjct: 49  RALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMV 108

Query: 126 VLARPGANVLLPRPGWPYY---------EGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL 176
            LA  G  V+LP    P+Y          GI            LLP      D  A EAL
Sbjct: 109 TLAGAGDEVILPL---PWYFNHKMWLDMLGIRPVYLPCDEGPGLLP------DPAAAEAL 159

Query: 177 ADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG 236
               T A+ ++ P NP G V+    L E+ ++AR+  + ++ DE Y    F S    P  
Sbjct: 160 ITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYR--DFDSGGGAPHD 217

Query: 237 LFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC 285
           LF    P     ++ L S SK + + G R G +V   P  I +    +D++  C
Sbjct: 218 LFAD--PDWDDTLVHLYSFSKSYALTGHRVGAVVA-SPARIAEIEKFMDTVAIC 268

Length = 386

>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 17/198 (8%)

Query: 80  YATNSGIPPARRAIADYLSRDLPYK-LSAD-DVYVTLGCKQAVEVILSVLARPGANVLLP 137
           YA N GI   + A A Y+ +    K +    +V  ++G K A+ ++ S    PG   L+ 
Sbjct: 78  YADN-GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMT 136

Query: 138 RPGWP-------YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG 190
            PG+P       YY G       EV +  LL E N+  DLD++     +    + +  P 
Sbjct: 137 VPGYPVTGTHTKYYGG-------EVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPN 189

Query: 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI 250
           NP G V T    +E+ + A++  ++VV D  Y  LTF   P + + + G+    + + S+
Sbjct: 190 NPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSL 249

Query: 251 SKRWLVPGWRFGWLVTND 268
           SK + + GWR  ++V N+
Sbjct: 250 SKAYNMTGWRLAFVVGNE 267

Length = 410

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 32/213 (15%)

Query: 24  TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN 83
           TV ++LA+   ++N         L  G    FP F       +A+  A+ +G  N Y   
Sbjct: 21  TVMSALAAEHGAIN---------LSQG----FPDFDGPPYLVEALAYAMAAG-HNQYPPM 66

Query: 84  SGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           +G+   R AIA   +R    +  AD ++ VT G  +A+   +  L RPG  V++  P + 
Sbjct: 67  TGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYD 126

Query: 143 YYE-------GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCG 194
            Y        G A R  ++   F         VD     A     T  ++I+N P NP G
Sbjct: 127 SYAPAIELAGGRAVRVALQPPDF--------RVDWQRFAAAISPRTR-LIILNTPHNPSG 177

Query: 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227
            V++   ++ + ++     + V++DEVY H+ F
Sbjct: 178 TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210

Length = 386

>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 28/202 (13%)

Query: 41  PRPVV-----PLGYGDPTA---FPCFRTAVEAEDAIVDA-----VRSGKFNCYATNSGIP 87
           PR VV     P    DP     FP         DAI  A     + SG    Y+ + G+P
Sbjct: 59  PRQVVALCQAPFLLDDPNVGLLFP--------ADAIARAKHYLSLTSGGLGAYSDSRGLP 110

Query: 88  PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPRPGWPYYEG 146
             R+ +A+++ R   Y    + +++T G  + V  IL+ + R     VL+P P +P Y  
Sbjct: 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA 170

Query: 147 IAQRKQVEVRHFDLLPERNWEVDLDAV-----EALADKNTA-AMVIINPGNPCGNVFTYH 200
                   +  + L    NW +D++ +     +A +   T  AMVIINPGNP G   +  
Sbjct: 171 TISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 230

Query: 201 HLQEIAEMARKLRVMVVADEVY 222
           +L+EI +   + R++++ DEVY
Sbjct: 231 NLREILKFCYQERLVLLGDEVY 252

Length = 407

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ LG GDP   P     +EA   +  AV   + + Y +  G+   R+A+AD+  R    
Sbjct: 33  VISLGIGDPD-LPTPDHIIEA---MCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGV 88

Query: 104 KLSADDVYVTL-GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162
           +L  +   ++L G K+ +  I      PG  VL+P PG+P Y+        E     L  
Sbjct: 89  ELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKE 148

Query: 163 ERNWEVDLDAV-EALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
           E  +  DLDA+ E +A K  A ++ IN P NP G V      +E+ + A+K  ++V  D 
Sbjct: 149 ENGFLPDLDAIPEDVAKK--AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDA 206

Query: 221 VYGHLTFGSIPYTPMGLFGSIVPV-------ITLGSISKRWLVPGWRFGWLVTN 267
            Y  + +    Y P     S + V       I   S+SK + + GWR G+ V N
Sbjct: 207 AYSEIAYDG--YKPP----SFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN 254

Length = 385

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 73.7 bits (181), Expect = 8e-15
 Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 21/246 (8%)

Query: 24  TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN 83
           TV   LA+  D++N         L  G P  F      VE    +  A+R G  N YA  
Sbjct: 20  TVIGQLAAQHDALN---------LSQGAPN-FAPDPALVEG---VARAMRDGH-NQYAPM 65

Query: 84  SGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           +GI   R A+A+   R    +     +V V     + +   +S L  PG  V+   P + 
Sbjct: 66  AGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFD 125

Query: 143 YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHH 201
            Y  I + +        L PE  + V+ D V A     T  M+I+N P NP   VF+   
Sbjct: 126 SYAPIVRLQGATPVAIKLSPED-FRVNWDEVAAAITPRTR-MIIVNTPHNPSATVFSAAD 183

Query: 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV--PVITLGSISKRWLVPGW 259
           L  +A++ R   +++++DEVY H+ F    +  M     +    VI + S  K + V GW
Sbjct: 184 LARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVI-VSSFGKSYHVTGW 242

Query: 260 RFGWLV 265
           R G+ +
Sbjct: 243 RVGYCL 248

Length = 384

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVIL 124
           + + +  +    + Y+T+ GIP  RRAI+ +        +  + +  VT+G K+ +  ++
Sbjct: 49  EKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLM 108

Query: 125 SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL-DAVEALADKNTAA 183
                 G  VL+P P +P +   A     +VR   L+   ++  +L  A+     K    
Sbjct: 109 LATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPK--PK 166

Query: 184 MVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSI 241
           M+I+  P NP          +++  +A++  V+VV D  Y  + + G    + M + G+ 
Sbjct: 167 MMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAK 226

Query: 242 VPVITLGSISKRWLVPGWRFGWLVTN 267
              +   ++SK + + GWR G++V N
Sbjct: 227 DVAVEFFTLSKSYNMAGWRIGFMVGN 252

Length = 395

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 82  TNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPG 140
           T SGI     A+ +Y +      L+AD +V + +G +  +  +  V A PG  +L+P PG
Sbjct: 67  TLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPG 126

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADKNTAAMVIIN-PGNPCGNVFT 198
           +  YE   Q       +  L  E ++  DL+ + E +ADK  A M+I+N PGNP   +  
Sbjct: 127 YTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK--AKMMILNFPGNPVPAMAH 184

Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVP 257
               +E+   A+K  ++VV D  Y    F G+ P + + + G+    + + S+SK + + 
Sbjct: 185 EDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLA 244

Query: 258 GWRFGWLVTN 267
           G R G+++ N
Sbjct: 245 GSRIGYMIGN 254

Length = 399

>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 28/251 (11%)

Query: 29  LASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87
           L ++   V      P + L  G+P    P F      +DA+   +       Y T +G+P
Sbjct: 16  LRALFAGVTPPADLPPISLSIGEPKHPTPAF-----IKDALAANL--DGLASYPTTAGLP 68

Query: 88  PARRAIADYLSR--DLPYKLSADDVYVTLGCKQAV-----EVILSVLARPGANVLLPRPG 140
             R AIA +L R   LP    A  V    G ++A+      VI      PG  V+ P P 
Sbjct: 69  ALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDR--DGPGPLVVCPNPF 126

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200
           +  YEG A     E    +  P  N+  D DAV A     T  + + +PGNP G V    
Sbjct: 127 YQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLD 186

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLF--------GSIVPVITLGSIS 251
             +++  ++ +   ++ +DE Y  + F  + P  P+GL              ++   S+S
Sbjct: 187 DWKKLFALSDRYGFVIASDECYSEIYFDEAAP--PLGLLEAAAELGRDDFKRLVVFHSLS 244

Query: 252 KRWLVPGWRFG 262
           KR  VPG R G
Sbjct: 245 KRSNVPGLRSG 255

Length = 396

>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 65/226 (28%), Positives = 91/226 (40%), Gaps = 32/226 (14%)

Query: 51  DPTAFPCFRTA-VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK-LSAD 108
           DP   P  R A   A DA            Y    G P  R AI D+L R      L   
Sbjct: 33  DPVP-PLIRAALAAAADA----------PGYPQTWGTPELREAIVDWLERRRGVPGLDPT 81

Query: 109 DVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE 167
            V   +G K+ V  + ++L   PG  V++P   +P YE  A          D   E    
Sbjct: 82  AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADDPTE---- 137

Query: 168 VDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226
             LD V          ++ +N PGNP G V +   L+ I   AR+   +V +DE Y  L 
Sbjct: 138 --LDPV-------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELG 188

Query: 227 FGSIPYT---PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +   P +   P    G    ++ + S+SKR  + G+R G+ V  DP
Sbjct: 189 WEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGF-VAGDP 233

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357

>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 28/241 (11%)

Query: 47  LGYGDPTAFPCFRTAVEA--EDAIVDAVRSGKFN---C-YATNSGIPPARRAIADYLSRD 100
           LG G+P   P     +E    D + D + SGK       Y    G      A+A  L+  
Sbjct: 35  LGGGNPAHIP----EMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNER 90

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-----VLLP-RPGWPYY--EGIAQRKQ 152
             + +S  ++ +T G + A   + ++ A   A+     +L P  P +  Y   G+ +   
Sbjct: 91  YGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLF 150

Query: 153 VEVR-HFDLLPER--NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
           V  R + +LLPE    + VD + +    D++T A+ +  P NP GNV T   L+++  +A
Sbjct: 151 VSYRPNIELLPEGQFKYHVDFEHLHI--DEDTGAICVSRPTNPTGNVLTDEELEKLDALA 208

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG-SISKRWLVPGWRFGWLVTND 268
           R+  + ++ D  YG   F  I ++      +  P I L  S+SK  L PG R G ++ ++
Sbjct: 209 RQHNIPLLIDNAYG-PPFPGIIFSEATPLWN--PNIILCMSLSKLGL-PGVRCGIVIADE 264

Query: 269 P 269
            
Sbjct: 265 E 265

Length = 416

>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 18/247 (7%)

Query: 30  ASIIDSVNK--NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87
           AS++  VNK   +   V+ LG G+P   P     VEA   + +A  +   + Y+   G P
Sbjct: 18  ASLVAKVNKKVAEGHDVINLGQGNPDQ-PTPEHIVEA---LQEAAENPANHKYSPFRGYP 73

Query: 88  PARRAIADYLSRDLPYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-Y 143
             + A AD+  R+  Y ++ D   +V +  G K  +  +   L  PG  +L+P PG+P Y
Sbjct: 74  FLKEAAADFYKRE--YGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDY 131

Query: 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADKNTAAMVIIN-PGNPCGNVFTYHH 201
             G+A  +  +     L+ E N+  D   + E +A+K  A ++ +N P NP G V T   
Sbjct: 132 LSGVALAR-AQFETMPLIAENNFLPDYTKIPEEVAEK--AKLMYLNYPNNPTGAVATKAF 188

Query: 202 LQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260
            +E    A+K  + VV D  YG + F G  P + +   G+    I L ++SK + + GWR
Sbjct: 189 FEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWR 248

Query: 261 FGWLVTN 267
             + V N
Sbjct: 249 VAFAVGN 255

Length = 389

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 9/187 (4%)

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA 148
              A+ ++L++   +++  + +    G   ++   +  L  PG  V++  P +P +    
Sbjct: 65  LYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAV 124

Query: 149 QRKQVEVRHFDLLP-ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAE 207
           +    E+    L      +  DL+ +E    +    +++ +P NP G V+T   L  +AE
Sbjct: 125 KSNGRELVLNPLKLDPGRYRFDLEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAE 184

Query: 208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFG 262
           +  +  V+VV+DE++  L +    + P     S+ P      +TL S  K + + G    
Sbjct: 185 LCLRHNVVVVSDEIHADLVYPPNKHIP---LASLSPEIAERTVTLLSPGKTFNIAGLNIS 241

Query: 263 WLVTNDP 269
           + +  +P
Sbjct: 242 FAIIPNP 248

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVIL 124
           D + +  +  + + Y+ + GIP  RRA A Y +R    KL+ D  V  TLG K+    + 
Sbjct: 50  DKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMA 109

Query: 125 SVLARPGANVLLPRPGWPYYE-GIAQRKQVEVRHFDLLPERNWEVDLD-AVEALADKNTA 182
             +  PG  +L P P +P +  G      V +R     P+  +   L+ AV     K   
Sbjct: 110 QAITAPGDVILCPNPSYPIHAFGFIMAGGV-IRSVPAEPDEEFFPALERAVRHSIPKPI- 167

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP--MGLFGS 240
           A+++  P NP   V      +++   A+K  +++++D  Y  + F   P  P  + + G+
Sbjct: 168 ALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP-PPSVLQVPGA 226

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTND 268
               +   S+SK + + GWR G+ V N+
Sbjct: 227 KDVTVEFTSMSKTFSMAGWRMGFAVGNE 254

Length = 405

>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 12/221 (5%)

Query: 48  GYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA 107
           G GDP       T      A++DAV   + + Y +  G    R AI+ +  R    KL  
Sbjct: 6   GTGDPKE----PTPPFIRKALIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDP 59

Query: 108 D-DVYVTLGCKQAVEVILSVLARPGAN---VLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
           D  V  + G K+A+     V   P  +   V+   PG+P YE  A     E     L  E
Sbjct: 60  DAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKE 119

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
             + + L+ VE    + T  + I  P NP G      +L+E   M R+  +++ +DE Y 
Sbjct: 120 DGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYT 179

Query: 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264
            + FG  P     L   I  V+   S+SKR  + G+R G++
Sbjct: 180 EIYFGEPP--HSALEVGIENVLAFHSLSKRSGMTGYRSGFV 218

The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350

>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 20/230 (8%)

Query: 47  LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS 106
           LG G+P      +  +EA  A   A+   + + Y    G    R+AI D+  R    +L 
Sbjct: 40  LGMGNPDGAAP-QPVIEAAIA---ALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELD 95

Query: 107 AD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEG--IAQRKQVEVRHFDLLP 162
            D +    LG K+ +  +      PG  VL+P P +P ++ G  IA     ++    L P
Sbjct: 96  PDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAG---AQIYPIILKP 152

Query: 163 ERNWEVDLDAV-EALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
           E +W +DL ++ E +A +  A ++  N P NP          +EI   ARK  +M+V D 
Sbjct: 153 ENDWLIDLSSIPEEVAQQ--AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDL 210

Query: 221 VYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRFGWLVTN 267
            Y  L F    Y P  L    G+    +   ++SK + + GWR G++V N
Sbjct: 211 CYAELAFDG--YQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN 258

Length = 394

>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 9/170 (5%)

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
           A+E    I+D +       Y+ + GI   R AIA  +     +    +D+++T G   AV
Sbjct: 145 AIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAV 204

Query: 121 EVILSVLARPGAN-VLLPRPGWPYYEG-IAQRKQVEVRHFDLLPERNWEVDLDAVEA-LA 177
            +++ +L R   + +L P P +P Y   IA      V ++ L     W +++  ++  L 
Sbjct: 205 HMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYY-LDEATGWGLEISELKKQLE 263

Query: 178 DKNTA-----AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
           D  +      A+V+INPGNP G V    + ++I E  ++  ++++ADEVY
Sbjct: 264 DARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVY 313

Length = 534

>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional

 Score = 62.1 bits (151), Expect = 5e-11
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 32/230 (13%)

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
           E ++ I + ++   FN Y  +    P R AIA++      Y L A+++ V  G  + +  
Sbjct: 35  ELKEEIFEELKRVPFNRYP-HITSDPLREAIAEF------YGLDAENIAVGNGSDELISY 87

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA 182
           ++ +    G ++++  P +  Y   A+   + V    L  + ++ +D + +   A KN +
Sbjct: 88  LVKLFE--GKHIVITPPTFGMYSFYAKLNGIPVIDVPL--KEDFTIDGERIAEKA-KNAS 142

Query: 183 AMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGS 240
           A+ I +P NP GN      LQ   E+ + L     VV DE Y   +  S+    +GL   
Sbjct: 143 AVFICSPNNPTGN------LQPEEEILKVLETGKPVVLDEAYAEFSGKSL----IGLIDE 192

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYS 290
              +I L + SK + + G R G+ + N          IID++      +S
Sbjct: 193 YPNLILLRTFSKAFGLAGIRAGYAIAN--------EEIIDALYRIKPPFS 234

Length = 337

>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 80  YATNSGIPPARRAIADYLSRDLPY-KLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLP 137
           Y T +G P  R AI  +L+R      L    V   +G K+ V  + ++L   PG  V++P
Sbjct: 58  YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117

Query: 138 RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF 197
              +P YE  A+     V            V  D++  L  +  A + + +P NP G V 
Sbjct: 118 ELAYPTYEVGARLAGATV------------VRADSLTELGPQRPALIWLNSPSNPTGRVL 165

Query: 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT---PMGLFGSIVPVITLGSISKRW 254
              HL+++   AR+   +V +DE Y  L + + P +   P    G    ++ + S+SK+ 
Sbjct: 166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225

Query: 255 LVPGWRFGWLVTNDP 269
            + G+R G+ V  DP
Sbjct: 226 NLAGYRAGF-VAGDP 239

Length = 364

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 64/272 (23%), Positives = 110/272 (40%), Gaps = 35/272 (12%)

Query: 4   GAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGY--GDPTAFPCFRTA 61
           G +N  G E +Q                 ++++ + +P P  P+ +  GD  A      A
Sbjct: 12  GTDNAPGQEVRQSAAG-------------LEALLRGEPLPGRPVDFSHGDVDAHEPTPGA 58

Query: 62  VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAV 120
            E        V  G    Y    G    R  +A  L+      + A D++ +T G + A+
Sbjct: 59  FEL---FSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGAL 115

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP--------ERNWEVDLDA 172
            + ++     G  V + +P +      A RK VE    +++P        ++   +DLD 
Sbjct: 116 FLAVAATVARGDKVAIVQPDY-----FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQ 170

Query: 173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232
           +E          +  NP NP G V++   + +IA +AR+    V+ D++Y  L +    Y
Sbjct: 171 LEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSY 230

Query: 233 TPMGLFGSIVP--VITLGSISKRWLVPGWRFG 262
           T +     I P  VIT+   SK   + G+R G
Sbjct: 231 THLRALP-IDPENVITIMGPSKTESLSGYRLG 261

Length = 405

>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 24/198 (12%)

Query: 85  GIPPARRAIADYLS--RDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+   R+A+A ++   R    +   D + +T G   A E++  +LA PG  +L+P P   
Sbjct: 96  GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTP--- 152

Query: 143 YYEGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM-------VIINPGN 191
           YY G  +    R  V++         N++V   A+EA A +   A        +I NP N
Sbjct: 153 YYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEA-AYQEAEAANIRVRGVLITNPSN 211

Query: 192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM-------GLFGSIVPV 244
           P G       L++I +   +  + +V+DE+Y    F +  +  +       G  G    V
Sbjct: 212 PLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERV 271

Query: 245 ITLGSISKRWLVPGWRFG 262
             + S+SK   +PG+R G
Sbjct: 272 HIVYSLSKDLGLPGFRVG 289

Length = 447

>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 37/182 (20%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI-LSVLARPGANVLLPRPGWPYYEGIA 148
           R+ IA +       +L  ++V +  G   A E+I   V       VL+  P +  YE   
Sbjct: 60  RKRIASF------EQLDLENVILGNG---ATELIFNIVKVTKPKKVLILAPTFAEYERAL 110

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +    E+ + +L  E N+  +   +E +  +    + + NP NP G + +   +++I + 
Sbjct: 111 KAFDAEIEYAELTEETNFAANEIVLEEI-KEEIDLVFLCNPNNPTGQLISKEEMKKILDK 169

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
             K  + ++ DE +      +   + +    +   +I + + +K + +PG R G+ +T++
Sbjct: 170 CEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229

Query: 269 PN 270
            N
Sbjct: 230 KN 231

Length = 354

>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 30/250 (12%)

Query: 29  LASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP 88
           L  ++  +  N     + L  G+P     F T    +DA+ +       N Y  ++G   
Sbjct: 11  LRELLKEITPNKEYKGLDLTIGEPQ----FETPKFIQDALKNNAHL--LNKYPKSAGEES 64

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILS----VLAR-PGANVLLPRPGWPY 143
            R A   +  R    +L  +++  T G +   EV+ +    VL       +  P P +  
Sbjct: 65  LREAQRGFFKRRFKIELKENELIPTFGTR---EVLFNFPQFVLFDKQNPTIAYPNPFYQI 121

Query: 144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVE-ALADKNTAAMVIIN-PGNPCGNVFTYHH 201
           YEG A   + +V    L  E ++   L+  E    D     +VI+N P NP G   +   
Sbjct: 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVD-----LVILNSPNNPTGRTLSLEE 176

Query: 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-------VITLGSISKRW 254
           L E  ++A K   +++ DE Y  +   + P  P  L  SI+        V+ + SISKR 
Sbjct: 177 LIEWVKLALKHDFILINDECYSEIYENTPP--PSLLEASILVGNESFKNVLVINSISKRS 234

Query: 255 LVPGWRFGWL 264
             PG R G++
Sbjct: 235 SAPGLRSGFI 244

Length = 374

>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 8/184 (4%)

Query: 88  PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI 147
           P  RA+ + ++      + AD + +  G +  + VI   + RPG  V+   P +P +E  
Sbjct: 71  PQGRALREAIAAR--TGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDY 128

Query: 148 AQRKQVEVRHFDLLPERNWEVDLDA-VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIA 206
                  V    + P+     DLDA   A+A      M   NP NP G+  T   L  + 
Sbjct: 129 PTMMGARVERVTVTPD--LGFDLDALCAAVARAPRMLM-FSNPSNPVGSWLTADQLARVL 185

Query: 207 EMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           +      ++VV DE Y     G   P     L    +P I L + SK + + G R G+ +
Sbjct: 186 DATPPETLIVV-DEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGL 244

Query: 266 TNDP 269
            +DP
Sbjct: 245 VSDP 248

Length = 371

>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP----PARRAIADYLSR 99
            + LG G+P   P      +  D + + + SGK      N   P        A+A  L R
Sbjct: 32  AIMLGGGNPARIPEMDDYFQ--DLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRR 89

Query: 100 DLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-----VLLPRPGWPYYEGIAQRKQVE 154
           +  + ++A ++ +T G + A   + ++ A   ++     +LLP    P Y G A    +E
Sbjct: 90  EYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLA--PEYIGYAD-AGLE 146

Query: 155 VRHF-------DLLPER--NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
              F       +LLP     + VD + +     ++T A+ +  P NP GNV T   L ++
Sbjct: 147 EDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GESTGAICVSRPTNPTGNVLTDEELAKL 204

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL-GSISKRWLVPGWRFGWL 264
             +AR+  + ++ D  YG + F  I ++      +    I L  S+SK  L PG R G +
Sbjct: 205 DALARQHGIPLIIDNAYG-VPFPGIIFSDATPLWN--ENIILCMSLSKLGL-PGSRCGII 260

Query: 265 VTND 268
           + N+
Sbjct: 261 IANE 264

Length = 417

>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 29/201 (14%)

Query: 85  GIPPARRAIADYLSRDLPYKLSADDVYVTL--GCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+   R+AIA ++ +    K++ D   V +  G   A E I+  LA PG   L+P P + 
Sbjct: 95  GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154

Query: 143 YYE-GIAQRKQVEVRHFDLLPERNWEVDLDAVE------ALADKNTAAMVIINPGNPCGN 195
            ++  +  R  VE+         N+++ +DA +        ++K    +++ NP NP G 
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214

Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT--------- 246
           +     L  +     +  + +V DE+Y    F        G F S+  V+          
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG------GDFVSVAEVVNDVDISEVNV 268

Query: 247 -----LGSISKRWLVPGWRFG 262
                + S+SK   +PG+R G
Sbjct: 269 DLIHIVYSLSKDMGLPGFRVG 289

Length = 496

>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 31/245 (12%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEA-EDAIVDAVRSGKFNCYATNSGIPPARRAIA-- 94
           KN    ++ LG GD T  P   + +EA  +A+ +      F  Y    G P  R AIA  
Sbjct: 29  KNPSADIIRLGIGDTTQ-PLPASVIEAFHNAVDELASPETFRGYGPEQGYPFLREAIAEN 87

Query: 95  DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY------EGIA 148
           DY  R     +  ++++++ G K  V  + S+   P   V +  P +P Y       G A
Sbjct: 88  DYRGR-----IDPEEIFISDGAKCDVFRLQSLF-GPDNTVAVQDPVYPAYLDSNVMAGRA 141

Query: 149 QRKQVEVRHFDL-----LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ 203
                + R+  +       E N+  +L       + +   + + +P NP G V T   L+
Sbjct: 142 GVLDDDGRYSKITYLPCTAENNFIPELPE-----EPHIDIIYLCSPNNPTGTVLTKEQLK 196

Query: 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWR 260
           E+ + A +   +++ D  Y    F S P  P  +F   G+    I   S SK     G R
Sbjct: 197 ELVDYANEHGSLILFDAAYS--AFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVR 254

Query: 261 FGWLV 265
            GW V
Sbjct: 255 LGWTV 259

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 45/182 (24%), Positives = 65/182 (35%), Gaps = 31/182 (17%)

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI-LSVLARPGANVLLPRPGWPYYEGI 147
            R A A Y      Y L A  V    G   A E I L         VL+  P +  Y   
Sbjct: 52  LRAAAAAY------YGLPAASVLPVNG---AQEAIYLLPRLLAPGRVLVLAPTYSEYARA 102

Query: 148 AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAE 207
            +    EV             DLD + A  ++     V+ NP NP G +     L  +A 
Sbjct: 103 WRAAGHEVVELP---------DLDRLPAALEEADLL-VVCNPNNPTGRLIPPETLLALAA 152

Query: 208 MARKLRVMVVADEVYGHLTFGSIPYTP----MGLFGSIVPVITLGSISKRWLVPGWRFGW 263
             R     +V DE +       I +TP             ++ L S++K + + G R G+
Sbjct: 153 RLRARGGWLVVDEAF-------IDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGF 205

Query: 264 LV 265
           +V
Sbjct: 206 VV 207

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 92  AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK 151
           A+AD         +S + V++  G   A++ +   +  PG  VL+P PG+ YY   A+  
Sbjct: 73  ALADRWD------VSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH 126

Query: 152 QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV-IINPGNPCGNVFTYHHLQEIAEMAR 210
             EVR + +    ++E   D V  L   +   +V + +P NP G+      ++ +AE   
Sbjct: 127 HGEVREYPVSKADDFEQTADTV--LDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTD 184

Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
           +   +VV DE YG   F   P + + L      V  L + SK + + G R G+ V  +
Sbjct: 185 E-ETLVVVDEAYGE--FAERP-SAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE 238

Length = 357

>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 38/109 (34%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 123 ILSVLAR----PGANVLLPRPGWPYYEGIAQR---KQVEVRHFDLLPERNWEVDLDAVEA 175
           IL +LAR    PG  V+    G+  Y   AQ    K VEV      P +++  DLDA+ A
Sbjct: 96  ILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEV------PAKDYGHDLDAMLA 149

Query: 176 LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR--VMVVADEVY 222
                T  + I NP NP G   TY   +E+      +   V+VV DE Y
Sbjct: 150 AVTPRTRLVFIANPNNPTG---TYLPAEEVERFLAGVPPDVLVVLDEAY 195

Length = 367

>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 21/203 (10%)

Query: 68  IVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL 127
           I + V+S + N Y   +     R  +A Y S      +   +++V  G  + + +I+   
Sbjct: 44  IQEIVKSSQVNIYPDPTAEK-LREELARYCS------VVPTNIFVGNGSDEIIHLIMLAF 96

Query: 128 ARPGANVLLPRPG---WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM 184
              G  V+ P P    +  Y  IA   ++ V+   L  +  ++V    ++ +       +
Sbjct: 97  INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVK---LKEDYTYDVG-SFIKVIEKYQPKLV 152

Query: 185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV 244
            + NP NP G+V     + +I E +R +   VV DE Y    +G+   T + +      +
Sbjct: 153 FLCNPNNPTGSVIEREDIIKIIEKSRGI---VVVDEAYFEF-YGN---TIVDVINEFENL 205

Query: 245 ITLGSISKRWLVPGWRFGWLVTN 267
           I L ++SK + + G R G+ V N
Sbjct: 206 IVLRTLSKAFGLAGLRVGYAVAN 228

Length = 351

>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R  +A +L       +  + +    G  + +++I   L  PG N ++  P +  Y   A 
Sbjct: 70  RTKVAKHL------GVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAI 123

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
            +  EVR    +P ++   DL+A+    D+ T  + I NP NP G    +  L    E  
Sbjct: 124 IEGAEVRE---VPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV 180

Query: 210 RKLRVMVVADEVY 222
               V+VV DE Y
Sbjct: 181 PS-HVLVVLDEAY 192

Length = 359

>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 23/218 (10%)

Query: 66  DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVIL 124
           D + ++ +  K + Y+ + GI   R AI ++  R     L  + +V  T+G K+    ++
Sbjct: 53  DKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLV 112

Query: 125 SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA----VEALADKN 180
             +  PG   ++P P +P +          V    L    ++E+D D     +E    ++
Sbjct: 113 QAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRES 172

Query: 181 T--AAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMG 236
           +     V++N P NP          + +  +A+K R  +++D  Y  +TF    Y TP  
Sbjct: 173 SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTP-- 228

Query: 237 LFGSIVPV-------ITLGSISKRWLVPGWRFGWLVTN 267
              SI+ V       +   ++SK + + GWR G++V N
Sbjct: 229 ---SILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGN 263

Length = 403

>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 83  NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           + G    R+ IA+ L       +  + V    G  + +++I   + + G N++     +P
Sbjct: 63  DGGATTLRQTIANKL------HVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFP 116

Query: 143 YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL 202
            Y   A  +  EV+    +   N   DLD + ++ D +T  + I NP NP G       L
Sbjct: 117 QYRHHAIIEGCEVKE---VALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKL 173

Query: 203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG 262
            +  E   +  ++V+ +  Y ++T    P T + L      ++ L + SK + +  +R G
Sbjct: 174 TQFIEGISENTLIVIDEAYYEYVTAKDFPET-LPLLEKHKNILVLRTFSKAYGLASFRVG 232

Query: 263 WLV 265
           + V
Sbjct: 233 YAV 235

Length = 366

>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 36/211 (17%)

Query: 85  GIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+P  + A+A+++S     K++ D   + +T G   A E ++  LA PG   LLP P   
Sbjct: 87  GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTP--- 143

Query: 143 YYEGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEAL---ADK---NTAAMVIINPGNP 192
           YY G  +    R  VE+          +++   A+E     A K       ++I NP NP
Sbjct: 144 YYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNP 203

Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI------- 245
            G   T   L  + +      + +++DE+Y    F S    P   F S++ V+       
Sbjct: 204 LGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS----PG--FVSVMEVLKDRKLEN 257

Query: 246 --------TLGSISKRWLVPGWRFGWLVTND 268
                    + S+SK   +PG+R G + +ND
Sbjct: 258 TDVSNRVHIVYSLSKDLGLPGFRVGAIYSND 288

Length = 468

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDV---YVTLGCKQAVEVILSVLARPGANVLL 136
           YA   GIP  R    + + R+ P  LS   +    VT      + ++  +    G  VLL
Sbjct: 40  YAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLL 98

Query: 137 PRPGWPYYEGI-AQRKQVEVRHFDLLPERNWEVDLDA-VEAL--ADKNTAAMVIIN-PGN 191
           P   W  Y+     R+  E+  + +  E +   D DA  EAL  A      +VI+N P N
Sbjct: 99  PDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYNKGKVIVILNFPNN 157

Query: 192 PCGNVFTYHHLQEIAEMARKL-----RVMVVADEVY 222
           P G   T      I E  ++L     +V+ V D+ Y
Sbjct: 158 PTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAY 193

Length = 388

>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 128 ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADKNTAAMVI 186
           A+PGA VL P PG+  Y   A+   +E     L  +  + +DL A+  A+A+   A + +
Sbjct: 102 AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD--FTLDLPAMLAAIAEHRPALVFL 159

Query: 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
             P NP GN+F    ++ I E A  L   VV DE Y
Sbjct: 160 AYPNNPTGNLFDDADVERIIEAAPGL---VVVDEAY 192

Length = 356

>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVT-LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA 148
           R A++ Y        +  +++ V   G  + ++ ++     PG  V++P P + YYE  A
Sbjct: 75  REALSKY------TGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISA 128

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +    +  +     E ++ +D+D+V     + T  + +  P NP GN+     +++I E 
Sbjct: 129 KAHGAKPVY--AKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILE- 185

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
                 +V  DE Y  + F    YTP  L      +I   + SK + + G R G+    +
Sbjct: 186 --STDALVFVDEAY--VEFAEYDYTP--LALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE 239

Length = 361

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 26/121 (21%)

Query: 119 AVEVILSVLARPGANVLLPRPGWPYYEG-------IAQRKQVEVRHFDLLPERNWEVDLD 171
           A+   L  L + G +V+        Y G       +  R  +EV   D         DLD
Sbjct: 79  AIFAALLALLKAGDHVVATDD---LYGGTYRLFEKVLPRFGIEVTFVDPS-------DLD 128

Query: 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           A+EA    NT A+ +  P NP   V     ++ IA++A+K   +VV D      TF S P
Sbjct: 129 ALEAAIKPNTKAVFLETPTNPLLKV---VDIEAIAKIAKKHGALVVVDN-----TFAS-P 179

Query: 232 Y 232
           Y
Sbjct: 180 Y 180

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 22/144 (15%)

Query: 142 PYYEGIAQ--RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
           PY E I +  R  +EV H +   E  W+     +E L D +  A+ ++NP NP     + 
Sbjct: 202 PYLE-IPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSD 260

Query: 200 HHLQEIAEMARKLR--VMVVADEVYGHLTFG----SIPYTPMGLFGSIVPVITLG--SIS 251
             L++IA++  + R  +M++ D+VYG  TF     S+         +++P  T+   S S
Sbjct: 261 ESLEKIADIVNEKRPDLMIITDDVYG--TFVDDFRSL--------FAVLPYNTILVYSFS 310

Query: 252 KRWLVPGWRFGWLVTNDPNGIFQK 275
           K +   GWR G +  ++ N +F K
Sbjct: 311 KYFGATGWRLGVIALHEDN-VFDK 333

Length = 527

>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 28/167 (16%)

Query: 119 AVEVILSVLARPGANVLLPR------PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA 172
             E I +V      + L PR      PG+  Y    Q+   E+R + L     W++    
Sbjct: 81  ETESIFAV-----VSGLKPRRAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLTDAI 135

Query: 173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232
           +EAL       + +  P NP G +     LQ IAE  + L + ++ DE +  + F  IP 
Sbjct: 136 LEALTPD-LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAF--IDF--IPD 190

Query: 233 TPMGLFGSIVPVIT-------LGSISKRWLVPGWRFGWLVTNDPNGI 272
                    +P +        L S++K + +PG R G+LV +D   +
Sbjct: 191 ET-----GFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAV 232

Length = 356

>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 105 LSADDVYVTLGCKQAVEVILSVLARPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
           +  + V V+ G  + +E+++     PG   +L   P +  Y   A+   VE+R    L  
Sbjct: 72  VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD- 130

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
            NW++DL A+    D     + + +P NP GN+     L+ + E+ R  + +VVADE Y
Sbjct: 131 -NWQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAY 186

Length = 351

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 19/199 (9%)

Query: 38  KNDPRP-VVPLG---YGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           K DPRP  V LG   Y D     P  R   +AE  +++     K   Y    G+P    A
Sbjct: 21  KADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLE---QEKTKNYLPIEGLPEFLEA 77

Query: 93  IADYLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIA 148
           +   L       L+ D V    TLG   A+ V    LAR  P A V +  P WP ++ I 
Sbjct: 78  VQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIF 137

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA---MVIINP--GNPCGNVFTYHHLQ 203
           +   +EV  +         +D D +  LAD  TA    +V+++    NP G   T    Q
Sbjct: 138 EAAGLEVETYPYYDAETKGLDFDGM--LADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQ 195

Query: 204 EIAEMARKLRVMVVADEVY 222
           E+A++ ++  ++   D  Y
Sbjct: 196 ELADLIKERGLIPFFDIAY 214

Length = 396

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 119 AVEVILSVLARPGANVLLPRP--GWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVE 174
           A+   L  L + G +VLLP    G  Y   E I Q+  VEV   D         D     
Sbjct: 90  AISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP------GDDEALEA 143

Query: 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY 232
           A+ + NT  + +  P NP   V     +  IA +A+    +VV D      TF +   
Sbjct: 144 AIKEPNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDN-----TFATPVL 193

Length = 396

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGW-PYYEGIAQRKQVEVRHFDLL 161
            +   D          A E  L  L  PG  V++   G    Y   A+    +     + 
Sbjct: 13  LQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72

Query: 162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
                 +D+  +E L  K N A +VI       G       L+EI ++A++  ++++ D 
Sbjct: 73  DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGV---LVPLKEIRKIAKEYGILLLVDA 129

Query: 221 VY 222
             
Sbjct: 130 AS 131

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 38/186 (20%)

Query: 88  PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR------PGW 141
            AR A+A    R        D+V +  G  +      ++LAR     L PR      P +
Sbjct: 62  RARAAVAARHGRT------PDEVLLLAGAAEG----FALLAR-----LRPRRAAVVHPSF 106

Query: 142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYH 200
              E   +   + V    L P   + +D  AV   AD     +V+I NP NP   +   H
Sbjct: 107 TEPEAALRAAGIPVHRVVLDPP--FRLDPAAVPDDAD-----LVVIGNPTNPTSVL---H 156

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGW 259
             +++  + R  R++VV DE +      ++P  P  L G  +P V+ L S++K W + G 
Sbjct: 157 PAEQLLALRRPGRILVV-DEAFAD----AVPGEPESLAGDDLPGVLVLRSLTKTWSLAGL 211

Query: 260 RFGWLV 265
           R G+ +
Sbjct: 212 RVGYAL 217

Length = 349

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 26/121 (21%)

Query: 119 AVEVILSVLARPGANVLLPRPGWPYYEG-------IAQRKQVEVRHFDLLPERNWEVDLD 171
           A+  +L  L + G +V+        Y G       +  +  +EV   D         D +
Sbjct: 67  AISTVLLALLKAGDHVVASDDL---YGGTYRLFERLLPKLGIEVTFVDPD-------DPE 116

Query: 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           A+EA     T  + + +P NP   V     ++ IAE+A +   ++V D      TF + P
Sbjct: 117 ALEAAIKPETKLVYVESPTNPTLKV---VDIEAIAELAHEHGALLVVDN-----TFAT-P 167

Query: 232 Y 232
           Y
Sbjct: 168 Y 168

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR---PGANVLLPRPG----- 140
           AR  +A++++       S +++  T G  +A+ ++   L R   PG  +L+         
Sbjct: 48  AREKVAEFINAP-----SDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANL 102

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF-TY 199
            P+ E +A+R    VR   + P  N  +DLDA+E L    T   V I   +   NV  T 
Sbjct: 103 VPWQE-LAKRTGATVRVIPVDP--NGLLDLDALEKLLTPRTKL-VAITHVS---NVTGTV 155

Query: 200 HHLQEIAEMARKLRVMVVADEV--YGHL 225
           + ++EI ++A +   +VV D     GH 
Sbjct: 156 NPVEEIGKLAHEYGALVVVDAAQAVGHR 183

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 19/118 (16%)

Query: 166 WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR--VMVVADEVYG 223
           W+     +E L D +  A+ ++NP NP     +   +++I ++    R  +M++ D+VYG
Sbjct: 226 WQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG 285

Query: 224 ------HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK 275
                    F  +PY  +G++          S SK +   GWR G +  +  N IF K
Sbjct: 286 TFVDDFRSLFAELPYNTIGVY----------SFSKYFGATGWRLGTIALHKDN-IFDK 332

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521

>gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 87  PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-VLLPRPGWPYYE 145
           PP  R+    L     Y  + + + +  G  +A+++++  L  PG + VL+  P +  Y 
Sbjct: 61  PPGLRSALAAL-----YGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA 115

Query: 146 GIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYHHLQ 203
             A+ +   +    L+     +  D+ A+ A A  + A +V + +P NP G+      L 
Sbjct: 116 VCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIA---LD 172

Query: 204 EIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF 261
           +I    + L  + +VV DE YG   F  +P + +GL      +  L ++SK   +   R 
Sbjct: 173 QIERALQALQGKALVVVDEAYGE--FSDVP-SAVGLLARYDNLAVLRTLSKAHALAAARI 229

Query: 262 GWLVTN 267
           G L+ N
Sbjct: 230 GSLIAN 235

Length = 364

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF-TYHHLQEIAEMARK 211
           +EV             DL+A+EA  D +TAA+V+  P     N F     L+EIAE+A  
Sbjct: 180 IEVVEVPYEDGV---TDLEALEAAVDDDTAAVVVQYP-----NFFGVIEDLEEIAEIAHA 231

Query: 212 LRVMVVA 218
              + + 
Sbjct: 232 GGALFIV 238

Length = 447

>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP 162
            KL  + + +T G  +A+  ++ +LA     V++PR  +  YE +A+     +       
Sbjct: 50  SKLFGEPIVITAGITEALY-LIGILALRDRKVIIPRHTYGEYERVARFFAARI------- 101

Query: 163 ERNWEVDLDAVEALADKNTAAMVII--NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
                 D + +E L ++N+   V+   NP NP G  + +  L+ + +       +++ DE
Sbjct: 102 -IKGPNDPEKLEELVERNS---VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE 157

Query: 221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
            +       I +           +I L + +K + +PG R G+
Sbjct: 158 AF-------IDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGY 193

Length = 311

>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-----ARPGANVLLPRPGWPYY 144
           ++AIA+Y++             +++G   + E+I S+L        G+ +L+  P +  Y
Sbjct: 72  KQAIAEYVNESAAGSSQITPANISVG-NGSDELIRSLLIATCLGGEGS-ILVAEPTFSMY 129

Query: 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL--ADKNTAAMVI--INPGNPCGNVFTYH 200
             +AQ   + V      PE  +E+DL A ++     +N    V+  ++P +P GN  T  
Sbjct: 130 GILAQTLGIPVVRVGRDPE-TFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT-- 186

Query: 201 HLQEIAEMARKL--RVMVVADEVY 222
                 E  R L   ++VV DE Y
Sbjct: 187 --AAELEWLRSLPEDILVVIDEAY 208

Length = 374

>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 24/216 (11%)

Query: 68  IVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSV 126
           +++A+ + KF   Y       P  R +   L+ D    L ++++ V  G  + +++++  
Sbjct: 70  VLEALGNMKFPYVYPD-----PESRRLRAALAED--SGLESENILVGCGADELIDLLMRC 122

Query: 127 LARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI 186
           +  PG  ++   P +  Y   A     EV      P+ + +V    VEA+       + +
Sbjct: 123 VLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPR-IVEAVETHKPKLLFL 181

Query: 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT 246
            +P NP G++ +   L +I E    L ++VV DE Y  + F +   + M        +I 
Sbjct: 182 TSPNNPDGSIISDDDLLKILE----LPILVVLDEAY--IEFSTQE-SRMKWVKKYDNLIV 234

Query: 247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI 282
           L + SKR  + G R G+       G F    II+ +
Sbjct: 235 LRTFSKRAGLAGLRVGY-------GAF-PLSIIEYL 262

Length = 380

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 122 VILSVLARPGANVLLPRPGWPY-YE--GIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD 178
           + L    R G  V+   P   Y  E  G A+    +     L      ++DL+ +EA   
Sbjct: 62  LALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPV--PLPGAEAGKLDLEDLEAAIR 119

Query: 179 -------KNTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKLRVMVVAD 219
                    T  + + N  N   G V +   L+EI  +AR+  + +  D
Sbjct: 120 PVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLD 168

Length = 288

>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 22/151 (14%)

Query: 133 NVLLPRPGWPYYEGIAQRKQVEVRH--FDLLP----ERNWEVDLDAVEALADKNTAAMVI 186
           N+++  P +  Y+G A              LP      N E+       L + N   + I
Sbjct: 81  NIIIVEPNFNEYKGYA-----FTHGIRISALPFNLINNNPEI-------LNNYNFDLIFI 128

Query: 187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT 246
           ++P NP GN+ +   L  I+E+ RK   ++  DE +    F         L       + 
Sbjct: 129 VSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFID--FVPNRAEEDVLLNRSYGNVI 186

Query: 247 LG-SISKRWLVPGWRFGWLVTNDPN-GIFQK 275
           +G S++K   +P  R G++ T+D N  I +K
Sbjct: 187 IGRSLTKILGIPSLRIGYIATDDYNMKISRK 217

Length = 332

>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 19/185 (10%)

Query: 87  PPAR-RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP-RPGWPYY 144
           PP    A + Y        ++ + +  + G  +A+E+++     PG + +    P +  Y
Sbjct: 62  PPELINAYSAY------AGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMY 115

Query: 145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYHHLQ 203
              A+   V V+   L  +  +++ LD +E L     A +V I NP NP G V     ++
Sbjct: 116 AISAETFNVGVKALPLTAD--YQLPLDYIEQLDG---AKLVFICNPNNPTGTVIDRADIE 170

Query: 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
           ++ EM      +VV DE Y  + F    Y+   L  S   ++ L ++SK + + G R G+
Sbjct: 171 QLIEMTPD--AIVVVDEAY--IEF-CPEYSVADLLASYPNLVVLRTLSKAFALAGARCGF 225

Query: 264 LVTND 268
            + N+
Sbjct: 226 TLANE 230

Length = 354

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PLN02187	462	rooty/superroot1	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PLN02368	407	alanine transaminase	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK06855	433	aminotransferase; Validated	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK09148	405	aminotransferase; Validated	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PLN02231	534	alanine transaminase	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07324	373	transaminase; Validated	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PLN02397	423	aspartate transaminase	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.98
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.97
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.97
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.96
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.96
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.95
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.94
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.93
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.93
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.92
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.92
PRK07049	427	methionine gamma-lyase; Validated	99.92
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.91
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.91
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.91
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.91
PLN02242	418	methionine gamma-lyase	99.9
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.9
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.9
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.9
PRK06234	400	methionine gamma-lyase; Provisional	99.9
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.9
PLN02822	481	serine palmitoyltransferase	99.9
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.9
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.89
PRK02627	396	acetylornithine aminotransferase; Provisional	99.89
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.89
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.89
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.89
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.89
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.88
PRK08045	386	cystathionine gamma-synthase; Provisional	99.88
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.88
PRK08249	398	cystathionine gamma-synthase; Provisional	99.88
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.88
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.88
PLN02721	353	threonine aldolase	99.88
PRK10534	333	L-threonine aldolase; Provisional	99.88
PRK08776	405	cystathionine gamma-synthase; Provisional	99.88
PRK02948	381	cysteine desulfurase; Provisional	99.88
PRK13392	410	5-aminolevulinate synthase; Provisional	99.87
PRK07503	403	methionine gamma-lyase; Provisional	99.87
PRK07179	407	hypothetical protein; Provisional	99.87
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.87
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.87
PRK08861	388	cystathionine gamma-synthase; Provisional	99.87
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.87
PRK07811	388	cystathionine gamma-synthase; Provisional	99.87
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.87
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.87
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.87
PLN02483	489	serine palmitoyltransferase	99.87
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.87
PRK06767	386	methionine gamma-lyase; Provisional	99.87
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK07050	394	cystathionine beta-lyase; Provisional	99.86
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.86
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.86
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.86
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	99.86
PLN02409	401	serine--glyoxylate aminotransaminase	99.86
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.86
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.86
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.86
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.86
PRK08574	385	cystathionine gamma-synthase; Provisional	99.86
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.86
PRK06460	376	hypothetical protein; Provisional	99.85
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.85
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.85
PRK14012	404	cysteine desulfurase; Provisional	99.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.84
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.84
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.84
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.84
PRK07582	366	cystathionine gamma-lyase; Validated	99.83
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.83
PRK09064	407	5-aminolevulinate synthase; Validated	99.83
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.83
PRK09028	394	cystathionine beta-lyase; Provisional	99.83
PRK05939	397	hypothetical protein; Provisional	99.83
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.83
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.83
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.82
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.82
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.82
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.82
PLN02651	364	cysteine desulfurase	99.82
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.82
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.81
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.81
PRK13393	406	5-aminolevulinate synthase; Provisional	99.81
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.81
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.8
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.8
PRK07671	377	cystathionine beta-lyase; Provisional	99.8
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.8
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.8
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.8
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.8
PRK08064	390	cystathionine beta-lyase; Provisional	99.8
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.8
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.79
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.79
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.79
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.79
PRK05968	389	hypothetical protein; Provisional	99.79
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.78
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.78
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.78
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.78
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.77
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.77
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.77
PRK05967	395	cystathionine beta-lyase; Provisional	99.77
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.76
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.76
PRK07505	402	hypothetical protein; Provisional	99.76
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.76
PLN02509	464	cystathionine beta-lyase	99.76
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.75
PLN02955	476	8-amino-7-oxononanoate synthase	99.74
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.74
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.73
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.72
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.72
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.72
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.71
PRK04260	375	acetylornithine aminotransferase; Provisional	99.71
PRK08114	395	cystathionine beta-lyase; Provisional	99.7
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.7
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.67
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.67
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.67
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.67
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.65
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.65
PLN00144	382	acetylornithine transaminase	99.65
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.65
PRK04311	464	selenocysteine synthase; Provisional	99.64
PLN02624	474	ornithine-delta-aminotransferase	99.63
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.63
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.63
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.62
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.62
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.61
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.61
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.61
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.61
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.6
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.59
PRK06434	384	cystathionine gamma-lyase; Validated	99.59
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.58
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.57
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.55
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.55
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.53
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.52
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	99.51
PRK13237	460	tyrosine phenol-lyase; Provisional	99.5
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.5
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.5
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.5
PRK02769	380	histidine decarboxylase; Provisional	99.49
PLN03032	374	serine decarboxylase; Provisional	99.49
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.49
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.49
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.46
PRK15029	755	arginine decarboxylase; Provisional	99.45
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.44
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.43
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.42
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.42
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.42
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.41
PRK06541	460	hypothetical protein; Provisional	99.41
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.41
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.4
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.39
PLN02724	805	Molybdenum cofactor sulfurase	99.39
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.39
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.38
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.37
PRK03080	378	phosphoserine aminotransferase; Provisional	99.37
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.34
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.33
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.32
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.31
PLN02880	490	tyrosine decarboxylase	99.3
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.3
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.3
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.3
PLN02590	539	probable tyrosine decarboxylase	99.28
PRK13578	720	ornithine decarboxylase; Provisional	99.28
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.27
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.23
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.22
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.21
PLN02271	586	serine hydroxymethyltransferase	99.21
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.2
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.19
PLN02263	470	serine decarboxylase	99.19
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.17
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.17
PRK15400	714	lysine decarboxylase CadA; Provisional	99.16
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.14
PRK05367	954	glycine dehydrogenase; Provisional	99.13
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.13
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.13
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.11
PRK07482	461	hypothetical protein; Provisional	99.11
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.11
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.09
PRK07678	451	aminotransferase; Validated	99.09
PRK07046	453	aminotransferase; Validated	99.08
PRK06105	460	aminotransferase; Provisional	99.08
PRK05965	459	hypothetical protein; Provisional	99.08
PRK12403	460	putative aminotransferase; Provisional	99.07
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.07
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.06
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.05
PRK06062	451	hypothetical protein; Provisional	99.05
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.05
PRK06149	972	hypothetical protein; Provisional	99.04
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.04
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.03
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.02
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.01
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.0
PRK07481	449	hypothetical protein; Provisional	98.99
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.99
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.99
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.98
PRK06917	447	hypothetical protein; Provisional	98.97
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.97
PRK07036	466	hypothetical protein; Provisional	98.96
COG4100	416	Cystathionine beta-lyase family protein involved i	98.96
PRK07480	456	putative aminotransferase; Validated	98.95
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.95
PRK07483	443	hypothetical protein; Provisional	98.94
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.93
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.93
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.93
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.92
PRK06148	1013	hypothetical protein; Provisional	98.92
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.91
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.9
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.89
PRK12566	954	glycine dehydrogenase; Provisional	98.88
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.87
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.83
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.8
PRK12462	364	phosphoserine aminotransferase; Provisional	98.79
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	98.79
PRK05367	954	glycine dehydrogenase; Provisional	98.79
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.74
PLN02452	365	phosphoserine transaminase	98.73
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.73
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.7
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.69
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.69
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.68
PRK08297	443	L-lysine aminotransferase; Provisional	98.67
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.66
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.66
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.57
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.5
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.49
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.19
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.16
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.08
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.05
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.69
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.52
PLN02672	1082	methionine S-methyltransferase	97.49
KOG0629	510	consensus Glutamate decarboxylase and related prot	97.42
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.31
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.24
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.16
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.12
PRK12566	954	glycine dehydrogenase; Provisional	96.51
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	95.81
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	95.81
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	95.27
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	94.63
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	85.96
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	84.86
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	81.95
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	80.87

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-52  Score=359.14  Aligned_cols=294  Identities=56%  Similarity=1.021  Sum_probs=281.3

Q ss_pred             cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022213            7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI   86 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~   86 (301)
                      ..|++..+...+.....+++.++..++....-...+++|.|++|+|..+|.|++.+.+.+|+.++++.+....|+|+.|+
T Consensus        26 ~~W~f~gs~~a~ka~~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~  105 (447)
T KOG0259|consen   26 SVWRFKGSDAAKKAASVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGI  105 (447)
T ss_pred             cceeeccchhhhhhccccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCcccc
Confidence            34999999999999999999999988877655455699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      ...|+++|+|+.+.....+++++|++|+|+++||+.++.+|.+||..|++|.|+|+-|...+...|+++.++++.++++|
T Consensus       106 ~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~w  185 (447)
T KOG0259|consen  106 LPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDW  185 (447)
T ss_pred             HHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccc
Confidence            99999999999887777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213          167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT  246 (301)
Q Consensus       167 ~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~  246 (301)
                      .+|++.++.+++++|.++++.||+||+|.+++.+.+++|+++|+|++++||.||+|..+.|++.++.+++.+....+||.
T Consensus       186 eIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVit  265 (447)
T KOG0259|consen  186 EIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVIT  265 (447)
T ss_pred             eechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++|+||.|..||||+||++..++.+++.+...++.++++.+...+++++.|.|+
T Consensus       266 lggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~Al  319 (447)
T KOG0259|consen  266 LGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGAL  319 (447)
T ss_pred             ecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHh
Confidence            999999999999999999999999999988888999999998889999999885

>PLN02187 rooty/superroot1

Probab=100.00  E-value=2.6e-49  Score=367.27  Aligned_cols=295  Identities=50%  Similarity=0.970  Sum_probs=255.3

Q ss_pred             cccccccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC
Q 022213            3 NGAENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT   82 (301)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~   82 (301)
                      ++....|.+..+...+.....+|+.+...+++......++++|+|++|+|+.+|.+.+++.+.+++.++++.+....|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~  106 (462)
T PLN02187         27 NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGP  106 (462)
T ss_pred             cccccccccCcchhhhhhhhchHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence            45556699999999999988999999988887776667899999999999988888889999999998887666668999


Q ss_pred             CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           83 NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        83 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      ..|..+||+++|+|+.+.++..+++++|++|+|++++|..+++++++|||.|++++|+|+.|...++..|++++.+++.+
T Consensus       107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~  186 (462)
T PLN02187        107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP  186 (462)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCcc
Confidence            89999999999999998888889999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                      +++|.+|++.+++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+....
T Consensus       187 ~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~  266 (462)
T PLN02187        187 EKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV  266 (462)
T ss_pred             ccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCC
Confidence            67899999999999888899999999999999999999999999999999999999999999999765555666665556


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh---hcccCCCcccccccC
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC---LSIYSDIPTFIQVCE  300 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~~  300 (301)
                      ++|+++||||.|++||+|+||++++++...+   ++++.+...   .++..+++.+.|.++
T Consensus       267 ~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~---~~~~~~~~~~~~~~~~~~~s~~~Q~a~  324 (462)
T PLN02187        267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVF---ETTKVLQSIKQNLDVTPDPATIIQAAL  324 (462)
T ss_pred             cEEEEecchhhcCCccceeEEEEecCchhHH---HHHHHHHHHHHhccccCCCCHHHHHHH
Confidence            7999999999999999999999986543211   123344433   333345678888764

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-49  Score=358.48  Aligned_cols=247  Identities=30%  Similarity=0.522  Sum_probs=223.5

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCC-EEEcCCHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAV  120 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~g~~~al  120 (301)
                      .++|+|++|+|    ++++|+.+.+++.+++.++.. .|.+.+|+++||++|++++.++++..+++++ |++|+|+++|+
T Consensus        28 ~~vi~l~iG~P----d~~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al  102 (393)
T COG0436          28 EDVIDLSIGEP----DFPTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL  102 (393)
T ss_pred             CCEEEeCCCCC----CCCCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence            58999999996    488999999999998886544 6778899999999999999999998888877 99999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++.++++|||+|++++|+|+.|...+...|.+++.+++..+ ++|.+|++.+++++++++|++++++||||||.++++
T Consensus       103 ~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~  182 (393)
T COG0436         103 FLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSK  182 (393)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCH
Confidence            9999999999999999999999999999999999999998655 489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++|+++||+||+|..+.|++..+.++..+.. .+++|.++||||.|+++|||+||+++++.       ++
T Consensus       183 ~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~-------~l  255 (393)
T COG0436         183 EELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-------EL  255 (393)
T ss_pred             HHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH-------HH
Confidence            99999999999999999999999999999865666666655 47899999999999999999999998642       47


Q ss_pred             HHHHHhhhc-ccCCCcccccccC
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++.+.+..+ ..+|+++++|.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~Q~aa  278 (393)
T COG0436         256 IAALRKLKSYLTSCAPTPAQYAA  278 (393)
T ss_pred             HHHHHHHHHhcccCCCHHHHHHH
Confidence            788876544 5669999999764

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=9.3e-49  Score=361.16  Aligned_cols=295  Identities=62%  Similarity=1.115  Sum_probs=254.5

Q ss_pred             ccccccccchh-hhcCCcccHHHHHHHHHhhcccCC-CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC
Q 022213            6 ENKWGFEDKQE-HKAAPAVTVKTSLASIIDSVNKND-PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN   83 (301)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~   83 (301)
                      ...|.+..+.. .......+++.++..+.+.+..++ +.++|+|++|+|..+|.+++++.+.+++.++++......|++.
T Consensus        14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~   93 (430)
T PLN00145         14 TARWRFERANAALAAAGALSIRAVLNRVKACVDAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTC   93 (430)
T ss_pred             cccccccCchhhHHHhcccchhhHHHHHHHhhhcccCCCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCC
Confidence            35699999985 444455568887776766665543 7899999999999988899999999999998876656689998


Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE  163 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~  163 (301)
                      .|..+||+++++++.+.++.++++++|++|+|+++++++++.++.++||+|++++|+|+.|...+...|.+++.+++.++
T Consensus        94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~  173 (430)
T PLN00145         94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPE  173 (430)
T ss_pred             ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcc
Confidence            89999999999999988888899999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      ++|.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+....+
T Consensus       174 ~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  253 (430)
T PLN00145        174 RGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAP  253 (430)
T ss_pred             cCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCc
Confidence            78999999999999889999999999999999999999999999999999999999999999997666667766666678


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +|+++||||.|++||+|+||++++++..++...+++..++.+.+...+++++.|.++
T Consensus       254 vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~  310 (430)
T PLN00145        254 VLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAI  310 (430)
T ss_pred             EEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHH
Confidence            999999999999999999999987655443322345566666665557788888764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.8e-46  Score=344.54  Aligned_cols=276  Identities=63%  Similarity=1.097  Sum_probs=234.1

Q ss_pred             HHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC
Q 022213           25 VKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK  104 (301)
Q Consensus        25 i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~  104 (301)
                      |...+..+.+.+....++++|+|+.|+|+.+..+++|+.+.+++.++++......|++..|..+||+++++|+.+.++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~   94 (409)
T PLN00143         15 IDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ   94 (409)
T ss_pred             HHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            66766666666666678999999999987555588999999999988876666679988999999999999999888888


Q ss_pred             CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +++++|++|+|+++++..++++++++||.|++++|+|..|...++..|.+++.+++..+++|.+|++.++++++++++.+
T Consensus        95 ~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~  174 (409)
T PLN00143         95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAM  174 (409)
T ss_pred             CCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEE
Confidence            99999999999999999999999999999999999999999999999999999998666778899999999888888999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+....++|+++||||.|++||+|+||+
T Consensus       175 ~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~  254 (409)
T PLN00143        175 VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWL  254 (409)
T ss_pred             EEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEE
Confidence            99999999999999999999999999999999999999999987654555555655568999999999999999999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          265 VTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++++++..++..+.++.+++......+++.+.|.++
T Consensus       255 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~  290 (409)
T PLN00143        255 VTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAI  290 (409)
T ss_pred             EeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHH
Confidence            986553332111234555544433334577888764

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=3.9e-46  Score=342.35  Aligned_cols=276  Identities=61%  Similarity=1.107  Sum_probs=239.0

Q ss_pred             HHHHHHHHHhhcc-cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCC
Q 022213           25 VKTSLASIIDSVN-KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY  103 (301)
Q Consensus        25 i~~~~~~~~~~~~-~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~  103 (301)
                      |+.++..+++.+. +..+.++|+|+.|+|+..+.+++|+.+.+++.+++.......|++..|..+||+++++++.+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~   92 (409)
T PLN02656         13 IKGILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPY   92 (409)
T ss_pred             hhhHHHHHHHhccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            7777776666663 346789999999999866668889999999998888666668999899999999999999988888


Q ss_pred             CCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       104 ~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      .+++++|++|+|+++++..++.+++++||+|++++|+|..|....+..|++++.+++..++++.+|++.+++.+++++++
T Consensus        93 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~  172 (409)
T PLN02656         93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA  172 (409)
T ss_pred             CCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence            89999999999999999999999999999999999999999888888999999999876667889999999988888999


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +++++||||||.+++.+++++|+++|++++++||+|++|.++.|++..+.++..++...++|+++||||.|++||+|+||
T Consensus       173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~  252 (409)
T PLN02656        173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGW  252 (409)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEE
Confidence            99999999999999999999999999999999999999999999765555665565566899999999999999999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          264 LVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++++++...+.+++++++++.......+++.++|.++
T Consensus       253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~  289 (409)
T PLN02656        253 FVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAV  289 (409)
T ss_pred             EEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            9997654333334688888876554456788888764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=2.3e-45  Score=346.21  Aligned_cols=285  Identities=22%  Similarity=0.405  Sum_probs=237.7

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP   88 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   88 (301)
                      |.+..+.++.....+.+..+.+.+ +.+ ++.+.++|+|+.|+|+.+ .+++|+.+.+++.+.+..  ...|++..|..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~l~~G~p~~~-~~~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~  189 (517)
T PRK13355        115 RTFKKSHKLDNVLYDVRGPVVDEA-NRM-EAAGTHILKLNIGNPAPF-GFRTPDEVVYDMAQQLTD--TEGYSDSKGLFS  189 (517)
T ss_pred             cCCChhHHhhccCccHHHHHHHHH-HHH-HHcCCCeEEecCcCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCcChHH
Confidence            667788888888887666665533 333 335789999999999754 367788899998887753  347999999999


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      ||++|++++.++++.++++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|.+++.++++++++|.+
T Consensus       190 lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~  269 (517)
T PRK13355        190 ARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYP  269 (517)
T ss_pred             HHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCC
Confidence            99999999987666678999999999999999999999999999999999999999999999999999999877778999


Q ss_pred             CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213          169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG  248 (301)
Q Consensus       169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~  248 (301)
                      |++++++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+..+..+++++
T Consensus       270 d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~  349 (517)
T PRK13355        270 DIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFS  349 (517)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEe
Confidence            99999999988999999999999999999999999999999999999999999999999765566666665545678899


Q ss_pred             cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ||||.|+++|+|+||++++.+..+.  ++++..+........+++.++|.++
T Consensus       350 S~SK~~~~~G~RiG~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~q~a~  399 (517)
T PRK13355        350 GLSKSHMIAGYRIGWMILSGNKRIA--KDYIEGLNMLANMRLCSNVPAQSIV  399 (517)
T ss_pred             cchhhccCcccceEEEEeeCchhhH--HHHHHHHHHHhcCcCCcChHHHHHH
Confidence            9999999999999999986543211  1245555444444457788888763

>PLN02368 alanine transaminase

Probab=100.00  E-value=8.3e-45  Score=331.40  Aligned_cols=282  Identities=22%  Similarity=0.355  Sum_probs=225.7

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCC----CCC----------------------CChHHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAF----PCF----------------------RTAVEAE   65 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~----p~~----------------------~~~~~~~   65 (301)
                      .++.+++..+.+.+..+...... + ++.+.++|+|++|+|+..    .++                      .+++.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~-~-~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~   87 (407)
T PLN02368         10 SLNENVKKCQYAVRGELYLRASE-L-QKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIA   87 (407)
T ss_pred             hcCHHHHhhhhhcCCHHHHHHHH-H-HHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHH
Confidence            45566667777766666543332 2 234789999999998621    012                      2556666


Q ss_pred             HHHHHHHh-cCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcc
Q 022213           66 DAIVDAVR-SGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPY  143 (301)
Q Consensus        66 ~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~  143 (301)
                      +++..... ......|++..|.++||+++++|+.+++|..+++++|++|+|+++++..++++++ ++||.|++++|+|+.
T Consensus        88 ~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~  167 (407)
T PLN02368         88 RAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL  167 (407)
T ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc
Confidence            66544222 2345689999999999999999999888888899999999999999999999997 799999999999999


Q ss_pred             hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213          144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV  217 (301)
Q Consensus       144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii  217 (301)
                      |...++..|.+++.+++..+++|++|++.+++.+++      +++++++++||||||.+++.+++++|+++|++|+++||
T Consensus       168 y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II  247 (407)
T PLN02368        168 YSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLL  247 (407)
T ss_pred             HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            999999999999999987777889999999998863      57889999999999999999999999999999999999


Q ss_pred             EccCCcccccCCC-CCCCcccc----C----CCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          218 ADEVYGHLTFGSI-PYTPMGLF----G----SIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       218 ~D~~y~~~~~~~~-~~~~~~~~----~----~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +||+|.++.|++. .+.++..+    +    ...++|+++||||.| ++||+|+||+++.+.     ++++++++++...
T Consensus       248 ~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~-----~~~li~~~~~~~~  322 (407)
T PLN02368        248 GDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-----PPKTVEEIYKVAS  322 (407)
T ss_pred             EEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCC-----CHHHHHHHHHHhc
Confidence            9999999999763 34443222    1    235899999999998 899999999996321     1357888877654


Q ss_pred             ccCCCcccccccC
Q 022213          288 IYSDIPTFIQVCE  300 (301)
Q Consensus       288 ~~~~~~~~~q~~~  300 (301)
                      ...++++++|.++
T Consensus       323 ~~~~~~~~~Q~aa  335 (407)
T PLN02368        323 IALSPNVSGQIFM  335 (407)
T ss_pred             ccCCCCcHHHHHH
Confidence            4567888999764

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-44  Score=312.85  Aligned_cols=242  Identities=28%  Similarity=0.426  Sum_probs=215.2

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHH
Q 022213           47 LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILS  125 (301)
Q Consensus        47 l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~  125 (301)
                      |+.|.|    ++++|..+.+++++++++...++|.+..|+++|+++|++.+...+|....++ +|++|.|+.++|..++.
T Consensus        36 LgqGfp----~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~  111 (420)
T KOG0257|consen   36 LGQGFP----DFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL  111 (420)
T ss_pred             ccCCCC----CCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence            999996    4889999999999999877788999999999999999999999887766555 69999999999999999


Q ss_pred             HhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC------CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          126 VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL------PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       126 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +++++||+|++.+|.|..|...++..|..+++++..      ...+|.+|.++++..+.+++|++++|+||||||.+.++
T Consensus       112 ~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsR  191 (420)
T KOG0257|consen  112 GLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSR  191 (420)
T ss_pred             HHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCH
Confidence            999999999999999999999999999999999987      45678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      ++|++|+++|++||+++|.||+|..+.|++.....+..+. ..+++|.++|+||+|++.|||+||++++.        .+
T Consensus       192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~--------~L  263 (420)
T KOG0257|consen  192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK--------HL  263 (420)
T ss_pred             HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH--------Hh
Confidence            9999999999999999999999999999987666666653 34689999999999999999999999833        36


Q ss_pred             HHHHHhhh-cccCCCcccccccC
Q 022213          279 IDSIKDCL-SIYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~q~~~  300 (301)
                      ...++... +.....+++.|.|.
T Consensus       264 ~~~~~~vh~~~~~~~~Tp~q~A~  286 (420)
T KOG0257|consen  264 YSALFPVHQNFVFTCPTPIQEAS  286 (420)
T ss_pred             hhhHHHHhhccccccCcHHHHHH
Confidence            66666663 45556677788764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=2.1e-43  Score=324.64  Aligned_cols=287  Identities=30%  Similarity=0.604  Sum_probs=234.7

Q ss_pred             ccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022213            8 KWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP   87 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~   87 (301)
                      .|+..-+.+.+.. ..++.....++..   ...++++|+|+.|+|...+++.+++.+.+++.+.++......|+++.|..
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~   78 (412)
T PTZ00433          3 FWDVSMSKHAGRV-FNPLRTVTDNAKP---SPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSP   78 (412)
T ss_pred             cccccccHHHHhh-hccHHHHHHhhcc---CCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcH
Confidence            4776666655553 3334444433322   23588999999999875444677889999998888765566899989999


Q ss_pred             HHHHHHHHHHhhhC------CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           88 PARRAIADYLSRDL------PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        88 ~lr~~ia~~l~~~~------~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      +||+++++++.+.+      +..+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|++++.++++
T Consensus        79 ~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~  158 (412)
T PTZ00433         79 EAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCR  158 (412)
T ss_pred             HHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecC
Confidence            99999999998743      456889999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      .++++++|++++++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+...
T Consensus       159 ~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  238 (412)
T PTZ00433        159 PEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTT  238 (412)
T ss_pred             ccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCC
Confidence            66678899999999888889999999999999999999999999999999999999999999999876555556666555


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      .++|+++||||.|++||+|+||++++++...  .+++++.++.......+++.++|.++
T Consensus       239 ~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~q~a~  295 (412)
T PTZ00433        239 VPRVILGGTAKNLVVPGWRLGWLLLVDPHGN--GGDFLDGMKRLGMLVCGPCSVVQAAL  295 (412)
T ss_pred             CceEEEccchhhcCCCCeeEEEEEEeCCccc--HHHHHHHHHHHhhccCCCChHHHHHH
Confidence            5689999999999999999999998543211  13477777766543456888888754

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=1.8e-43  Score=326.68  Aligned_cols=259  Identities=25%  Similarity=0.351  Sum_probs=212.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++++|+.|+|..+ ++++|+.+.+++.+.+......+|++..|.++||+++++|+.+.+++.+++++|++|+|++++
T Consensus        30 ~g~~~~~~~~G~p~~~-~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~a  108 (433)
T PRK06855         30 LGVKITWENIGDPIAK-GEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDA  108 (433)
T ss_pred             ccccccccccCCCccc-CCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHH
Confidence            4678999999998543 478889999998888765556689999999999999999999988888999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHH-HhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIA-QRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNV  196 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~  196 (301)
                      +..++. ++++||.|++++|+|+.|.... ...|++++.++++.+++|.+|+++|++.++.  +++++++++||||||.+
T Consensus       109 l~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~  187 (433)
T PRK06855        109 IAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAV  187 (433)
T ss_pred             HHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcC
Confidence            999985 7899999999999999886543 3568888889887667888999999998863  56888999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      ++.+++++|+++|++||++||+||+|.++.|++..+.++..+..+.++|+++||||.|++||+|+||+++++....-.-.
T Consensus       188 ~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~  267 (433)
T PRK06855        188 YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFK  267 (433)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHH
Confidence            99999999999999999999999999999997655666666554456899999999999999999999986421100001


Q ss_pred             hHHHHHHhhhcccCCCcccccccC
Q 022213          277 GIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      .+++++........+++.+.|.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~Q~a~  291 (433)
T PRK06855        268 KYINSILNAKMIEVCSTTLPQMAI  291 (433)
T ss_pred             HHHHHHHHhhccccCCChHHHHHH
Confidence            233444333333446788888764

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=6.2e-43  Score=321.20  Aligned_cols=266  Identities=25%  Similarity=0.408  Sum_probs=226.0

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      ...+.+..+.+.++.+.+..       ...++|+|+.|+|+    +++++.+.+++.+.+++. ..+|++..|.++||++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~G~P~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~a   99 (413)
T PLN00175         32 VAKRLEKFKTTIFTQMSSLA-------IKHGAINLGQGFPN----FDGPDFVKEAAIQAIRDG-KNQYARGFGVPELNSA   99 (413)
T ss_pred             hhHHhhcCCCCHHHHHHHHh-------hcCCeEecCCCCCC----CCCCHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHH
Confidence            45556666666666665532       24589999999975    566788899998888753 4589999999999999


Q ss_pred             HHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           93 IADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      +++++.+.+++.++++ +|++|+|+++++..++.+++++||.|++++|+|..|...++..|.+++.+++.+++ +.++++
T Consensus       100 ia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~  178 (413)
T PLN00175        100 IAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPED  178 (413)
T ss_pred             HHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHH
Confidence            9999999888888887 79999999999999999999999999999999999999999999999999986543 789999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecC
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSI  250 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~  250 (301)
                      .+++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ..++..+.. .+++|+++||
T Consensus       179 ~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~Sf  257 (413)
T PLN00175        179 ELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSL  257 (413)
T ss_pred             HHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecc
Confidence            99999988899999999999999999999999999999999999999999999998653 345555543 4689999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ||.|++||+|+||++++.        +++..++...+ ...+++.+.|.++
T Consensus       258 SK~~~~~G~RiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~Q~a~  300 (413)
T PLN00175        258 GKTFSLTGWKIGWAIAPP--------HLTWGVRQAHSFLTFATATPMQWAA  300 (413)
T ss_pred             hhhccCcchheeeeEeCH--------HHHHHHHHHHhhccCCCCHHHHHHH
Confidence            999999999999999853        47787877654 3567888888764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=8.4e-43  Score=319.84  Aligned_cols=286  Identities=37%  Similarity=0.735  Sum_probs=230.1

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP   88 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   88 (301)
                      |...++.-.+-. ..+++.+...... . .+.++++|+|+.|+|..++.+++++.+.+++.+.+.+.....|++..|..+
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   77 (401)
T TIGR01264         1 WSVKPSDHSKNT-VNPIRAIVDNMKV-K-PNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALS   77 (401)
T ss_pred             CCcChHHHHhhh-hhHHHHHHHHHHh-h-hhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHH
Confidence            444444433332 3346666653332 2 223578899999998644457788899999988887655567988899999


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      ||+++++++.+. +..+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+++..++++++
T Consensus        78 lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~  156 (401)
T TIGR01264        78 AREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEI  156 (401)
T ss_pred             HHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCC
Confidence            999999999874 4468899999999999999999999999999999999999999999999999999998866667889


Q ss_pred             CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213          169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG  248 (301)
Q Consensus       169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~  248 (301)
                      |++.+++.++++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+....++|+++
T Consensus       157 d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~  236 (401)
T TIGR01264       157 DLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCG  236 (401)
T ss_pred             CHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEc
Confidence            99999998887889999999999999999999999999999999999999999999998765556666665555699999


Q ss_pred             cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ||||.|++||+|+||++++++...+  .++++.++...+...+++.+.|.++
T Consensus       237 SfSK~~~~~GlRiG~iv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~  286 (401)
T TIGR01264       237 GLAKRWLVPGWRLGWIIIHDRRGIL--RDIRDGLVKLSQRILGPCTIVQGAL  286 (401)
T ss_pred             cCcccCCCccceEEEEEecCcchhH--HHHHHHHHHHhhccCCCCcHHHHHH
Confidence            9999999999999999987542111  2355566555433345677888764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=7.2e-43  Score=318.99  Aligned_cols=236  Identities=18%  Similarity=0.276  Sum_probs=207.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      .+.++|+|+.|+|.    +++++.+.+++.+.+......+|++..|..+||+++|+|+.+.+|+.++++ +|++|+|+++
T Consensus        28 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~  103 (388)
T PRK07366         28 AGKELIDLSLGSSD----LPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQE  103 (388)
T ss_pred             cCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHH
Confidence            47789999999964    667788999998887655556799889999999999999998888889998 6999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++..++++++++||.|++++|+|..|...++..|.+++.++++.++++..|++++++.+.++++++++++||||||.+++
T Consensus       104 al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s  183 (388)
T PRK07366        104 GTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAP  183 (388)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCC
Confidence            99999999999999999999999999999999999999999977777889999998877777899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCccccCCC-CCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      .+++++|+++|++|+++||+||+|.++.|++.. ..++..++.. .++|+++||||.|++||+|+||++++.        
T Consensus       184 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------  255 (388)
T PRK07366        184 LSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNA--------  255 (388)
T ss_pred             HHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCH--------
Confidence            999999999999999999999999999987643 4455555443 468999999999999999999999743        


Q ss_pred             hHHHHHHhhhc
Q 022213          277 GIIDSIKDCLS  287 (301)
Q Consensus       277 ~~~~~~~~~~~  287 (301)
                      +++++++....
T Consensus       256 ~li~~l~~~~~  266 (388)
T PRK07366        256 QLIQALRQVKA  266 (388)
T ss_pred             HHHHHHHHHHh
Confidence            58888877654

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=1.8e-42  Score=316.49  Aligned_cols=272  Identities=24%  Similarity=0.370  Sum_probs=222.4

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.++.......+..+...+...  ...++++|+|+.|+|.    ++.++.+.+++.+.+.......|++..|.++||+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~ai   79 (389)
T PRK08068          6 SELLKQLPKQFFASLVAKVNKK--VAEGHDVINLGQGNPD----QPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAA   79 (389)
T ss_pred             hhHhhhcCccHHHHHHHHHHHH--HhcCCCeEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence            3445556666666665543322  1235689999999874    555677888888887755566898889999999999


Q ss_pred             HHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++|+.+.+|..++++ +|++|+|+++++..++.+++++||.|++++|+|..|...++..|++++.++++.++++.+|+++
T Consensus        80 a~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~  159 (389)
T PRK08068         80 ADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTK  159 (389)
T ss_pred             HHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHH
Confidence            999988888888888 8999999999999999999999999999999999999999999999999998766678899999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCCCCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGSIVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~~~~vi~~~s~S  251 (301)
                      +++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++.. .+...++|+++|||
T Consensus       160 l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~S  239 (389)
T PRK08068        160 IPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLS  239 (389)
T ss_pred             HHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecch
Confidence            99988778899999999999999999999999999999999999999999998886543334322 23345789999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.|++||+|+||++++.        +++++++.... +..+++.+.|.+
T Consensus       240 K~~g~~GlRiG~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~  280 (389)
T PRK08068        240 KTFNMAGWRVAFAVGNE--------SVIEAINLLQDHLFVSLFGAIQDA  280 (389)
T ss_pred             hccCCccceeEeEecCH--------HHHHHHHHHHhhccCCCChHHHHH
Confidence            99999999999999733        58888877654 233444455654

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-42  Score=317.35  Aligned_cols=271  Identities=21%  Similarity=0.295  Sum_probs=223.6

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .+.....++.+..+...+.. . ...+.++|+|+.|+|.    +++++.+.+++.+.+.......|++ .|..+||++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~y~~-~G~~~lr~aia   79 (399)
T PRK07681          7 TRMKAFQSSIFSELGAYKKE-K-IAAGHKMIDLSIGNPD----MPPADFVREEMVHTANQKESYGYTL-SGIQEFHEAVT   79 (399)
T ss_pred             HHHhhcCccHHHHHHHHHHH-h-hhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhccccCCCCC-CCcHHHHHHHH
Confidence            34444555666666554322 1 2246789999999964    5667888888888776433334553 79999999999


Q ss_pred             HHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           95 DYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        95 ~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      +|+.+.++..+++ ++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++.+++|.+|++.+
T Consensus        80 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  159 (399)
T PRK07681         80 EYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELI  159 (399)
T ss_pred             HHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHH
Confidence            9999888888898 899999999999999999999999999999999999999999999999999997777788999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK  252 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK  252 (301)
                      ++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++....++..++. .+++|+++||||
T Consensus       160 ~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  239 (399)
T PRK07681        160 PEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSK  239 (399)
T ss_pred             HHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccc
Confidence            9888778899999999999999999999999999999999999999999999987655555555443 357899999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      .|++||+|+||++++.        +++++++.... ...+++.+.|.++
T Consensus       240 ~~~~~GlRiG~~i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~  280 (399)
T PRK07681        240 SYSLAGSRIGYMIGNE--------EIVRALTQFKSNTDYGVFLPIQKAA  280 (399)
T ss_pred             ccCCccceeEEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence            9999999999998743        48888877654 3456777887653

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-42  Score=318.28  Aligned_cols=270  Identities=22%  Similarity=0.309  Sum_probs=222.2

Q ss_pred             CCcccHHHHHHHHHhhcccC-CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213           20 APAVTVKTSLASIIDSVNKN-DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS   98 (301)
Q Consensus        20 ~~~~~i~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~   98 (301)
                      ++..++++....+.+.+.-. -+.++|+|+.|+|+.   +++++.+.+++.+.+.......|++..|.++||+++++++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~---~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~   92 (405)
T PRK06207         16 APGQEVRQSAAGLEALLRGEPLPGRPVDFSHGDVDA---HEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLA   92 (405)
T ss_pred             CCcHHHHhhhhhhhhhhcCCcCCCCceecCCcCCCC---CCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHH
Confidence            34445555555554444322 357789999999862   35566778888887765555679998999999999999999


Q ss_pred             hhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC---CCCCCCCCHHHHH
Q 022213           99 RDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL---PERNWEVDLDAVE  174 (301)
Q Consensus        99 ~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~l~  174 (301)
                      +.+|..+++ ++|++|+|++++++.++++++++||+|++++|+|+.+...++..|.+++.++++   .+.++++|++.++
T Consensus        93 ~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~  172 (405)
T PRK06207         93 AFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE  172 (405)
T ss_pred             HHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHH
Confidence            988888888 899999999999999999999999999999999999999999999999999875   2346789999999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~  253 (301)
                      +.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..+.. .+++|+++||||.
T Consensus       173 ~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~  252 (405)
T PRK06207        173 EAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKT  252 (405)
T ss_pred             HhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhh
Confidence            998888899999999999999999999999999999999999999999999987655445544432 4689999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      |++||+|+||++++.        +++++++.... ...+.+.+.|.++
T Consensus       253 ~~lpGlRiG~ii~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~  292 (405)
T PRK06207        253 ESLSGYRLGVAFGSP--------AIIDRMEKLQAIVSLRAAGYSQAVL  292 (405)
T ss_pred             ccCcccceEEEEcCH--------HHHHHHHHHHhHhccCCCHHHHHHH
Confidence            999999999998743        47788877654 3445666777654

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=2.2e-42  Score=317.10  Aligned_cols=276  Identities=51%  Similarity=0.950  Sum_probs=230.6

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhC
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL  101 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~  101 (301)
                      ..+|+.+...+.+-  ..++.++|+|+.|+|...|.+++++.+.+++.+.+.......|++..|..++|+++++++...+
T Consensus        13 ~~~~~~~~~~~~~~--~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~   90 (403)
T TIGR01265        13 VNPIRAIVDNLKVK--PNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDL   90 (403)
T ss_pred             HHHHHHHHHHHHHH--HhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhc
Confidence            34555555433321  2246899999999998777889999999999988876555579888999999999999998877


Q ss_pred             CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213          102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT  181 (301)
Q Consensus       102 ~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  181 (301)
                      +..+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|.+++.+++..++++.+|++.+++.+++++
T Consensus        91 ~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~  170 (403)
T TIGR01265        91 PGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKT  170 (403)
T ss_pred             CCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCc
Confidence            77788999999999999999999999999999999999999998899999999999988666678899999999888889


Q ss_pred             cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      +++++++|+||||.+++.+++++|+++|+++|+++|+|++|.++.+++..+.++..+....++|+++||||.|++||+|+
T Consensus       171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi  250 (403)
T TIGR01265       171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRL  250 (403)
T ss_pred             cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceE
Confidence            99999999999999999999999999999999999999999999987655566666666667999999999999999999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          262 GWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       262 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ||+++++++.++ .+++++.++...+...+++.+.|.++
T Consensus       251 G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~  288 (403)
T TIGR01265       251 GWIIIHDPHGIF-RDTVLQGLKNLLQRILGPATIVQGAL  288 (403)
T ss_pred             EEEEEeCchhhh-HHHHHHHHHHHhhhhcCCChHHHHHH
Confidence            999986543222 11245556555543456788888764

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-42  Score=316.20  Aligned_cols=281  Identities=22%  Similarity=0.340  Sum_probs=224.2

Q ss_pred             cccccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC
Q 022213            5 AENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS   84 (301)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~   84 (301)
                      |+-.|- ..+.+.+.........+.+.+ ... ++.++++|+|+.|+|.    +++|..+.+++.+.+.......|++..
T Consensus         1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~~~~~Y~~~~   73 (394)
T PRK05942          1 MSLDWI-TPADRLQALPPYVFARLDELK-ARA-REQGLDLIDLGMGNPD----GAAPQPVIEAAIAALADPQNHGYPPFE   73 (394)
T ss_pred             CCCccc-chhhhhccCCCcHHHHHHHHH-HHH-HhcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCccCCCCC
Confidence            345673 444555555554333333211 111 2346789999999875    445666777776666544456899999


Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCC-EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE  163 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~  163 (301)
                      |.++||+++++|+.+.++..+++++ |++|+|+++++..++.+++++||+|++++|+|..+...+...|.+++.++++.+
T Consensus        74 G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~  153 (394)
T PRK05942         74 GTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPE  153 (394)
T ss_pred             CCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCc
Confidence            9999999999999987787788884 899999999999999999999999999999999998888899999999998766


Q ss_pred             CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CC
Q 022213          164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IV  242 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~  242 (301)
                      ++|.+|++++++.+.++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++....++..+.. ..
T Consensus       154 ~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK05942        154 NDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKD  233 (394)
T ss_pred             cCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccc
Confidence            77889999999988888999999999999999999999999999999999999999999999987655555554543 34


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      .+|+++||||.|++||+|+||++++.        +++++++.... ...+++.++|.++
T Consensus       234 ~~i~~~SfSK~~~~~GlRiG~i~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~  284 (394)
T PRK05942        234 IGVEFHTLSKTYNMAGWRVGFVVGNR--------HIIQGLRTLKTNLDYGIFSALQKAA  284 (394)
T ss_pred             cEEEEecchhccCChhhheeeeecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence            57999999999999999999999743        47888877654 3445677777653

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.7e-42  Score=317.23  Aligned_cols=268  Identities=23%  Similarity=0.372  Sum_probs=221.0

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY   96 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~   96 (301)
                      +...+.+.+..+.+.+ +.+....++++|+|+.|+|.    +++++.+.+++.+.+.  ....|++..|..+||++++++
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~   77 (396)
T PRK09147          5 LDRLQPYPFEKLRALF-AGVTPPADLPPISLSIGEPK----HPTPAFIKDALAANLD--GLASYPTTAGLPALREAIAAW   77 (396)
T ss_pred             hhcCCcchHHHHHHHH-HhhhhccCCCeEecCCCCCC----CCCCHHHHHHHHHHhh--hhcCCCCCCCCHHHHHHHHHH
Confidence            4456666776666543 22323357899999999974    5667888888887764  456899989999999999999


Q ss_pred             HhhhCCCC-CCCC-CEEEcCCHHHHHHHHHHHhcCC---CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           97 LSRDLPYK-LSAD-DVYVTLGCKQAVEVILSVLARP---GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        97 l~~~~~~~-~~~~-~i~~t~g~~~al~~~~~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      +.+.+|.. ++++ +|++|+|+++++..++++++++   ||.|++++|+|..|...++..|.+++.++++.+++|.+|++
T Consensus        78 ~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~  157 (396)
T PRK09147         78 LERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFD  157 (396)
T ss_pred             HHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHH
Confidence            99888887 8885 8999999999999999999999   89999999999999999999999999999977777899999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCC-cc---ccC--CCCCE
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTP-MG---LFG--SIVPV  244 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~-~~---~~~--~~~~v  244 (301)
                      .+++.+.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++.. +.+ +.   ..+  ..+++
T Consensus       158 ~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  237 (396)
T PRK09147        158 AVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRL  237 (396)
T ss_pred             HHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccE
Confidence            998877778999999999999999999999999999999999999999999999886531 111 11   111  23689


Q ss_pred             EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |+++||||.|++||+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       238 i~~~S~SK~~~~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~a  285 (396)
T PRK09147        238 VVFHSLSKRSNVPGLRSGFVAGDA--------ALLKKFLLYRTYHGCAMPPAVQAA  285 (396)
T ss_pred             EEEeccccccCCccceeeeecCCH--------HHHHHHHHHhhhcccCCCHHHHHH
Confidence            999999999999999999999743        47777776654 244677778765

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-42  Score=315.76  Aligned_cols=276  Identities=20%  Similarity=0.315  Sum_probs=221.9

Q ss_pred             ccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHH
Q 022213           10 GFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA   89 (301)
Q Consensus        10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~l   89 (301)
                      ++-..++.+..+...+..+...+. .+ +..+.++++|+.|+|.    .+.|+.+.+++.+.+.......|++..|..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~l   76 (403)
T PRK08636          3 DEIEFNKIKRLPKYVFAEVNELKM-AA-RRAGEDIIDFSMGNPD----GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKL   76 (403)
T ss_pred             chHHHHHHHhCCccHHHHHHHHHH-HH-HhcCCCEEEcCCcCCC----CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHH
Confidence            444455666667777766665332 22 2246789999999975    34466677777666554446689999999999


Q ss_pred             HHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           90 RRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        90 r~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      |+++|+|+.+.+++.++++ +|++|+|+++++..++++++++||.|++++|+|+.+...++..|.+++.++++.++++++
T Consensus        77 R~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  156 (403)
T PRK08636         77 RLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFEL  156 (403)
T ss_pred             HHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCcc
Confidence            9999999998888888887 799999999999999999999999999999999999999999999999998865566789


Q ss_pred             CHHHH----Hhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          169 DLDAV----EALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       169 ~~~~l----~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      |++.+    +++++   .+++.+++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....++..++..
T Consensus       157 d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~  236 (403)
T PRK08636        157 DEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGA  236 (403)
T ss_pred             ChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCc
Confidence            97754    55553   367888999999999999999999999999999999999999999999876555566665443


Q ss_pred             -CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213          242 -VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       242 -~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                       +++|+++||||.|++||+|+||++++.        ++++++++.... ..+++++.|.+
T Consensus       237 ~~~~i~~~S~SK~~~~~GlRiG~iv~~~--------~li~~~~~~~~~~~~~~~~~~q~~  288 (403)
T PRK08636        237 KDVAVESYTLSKSYNMAGWRVGFVVGNK--------KLVGALKKIKSWLDYGMFTPIQVA  288 (403)
T ss_pred             cccEEEEEecccccCCccceeeeeeCCH--------HHHHHHHHHHHHhcccCChHHHHH
Confidence             467889999999999999999998743        477777776542 34666777765

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=4.8e-42  Score=313.42  Aligned_cols=269  Identities=24%  Similarity=0.383  Sum_probs=228.1

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      ..+++...+..+.++.+.....  ...++++|+|+.|+|.    +++|+.+.+++.+.+.... ..|.+..|.+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~-~~Y~~~~g~~~lr~~i   78 (387)
T PRK08960          6 SRRSRDIEPFHVMALLARANEL--EAAGHDVIHLEIGEPD----FTTAEPIVAAGQAALAAGH-TRYTAARGLPALREAI   78 (387)
T ss_pred             hhHHHhCCchHHHHHHHHHHHH--HhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhcCC-CccCCCCCCHHHHHHH
Confidence            4556677788888877755432  2246789999999974    6678899999988887433 4798889999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++++.+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|.+++.++++.++++.+|++.+
T Consensus        79 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  158 (387)
T PRK08960         79 AGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALV  158 (387)
T ss_pred             HHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHH
Confidence            99999888888999999999999999999999999999999999999999999999999999999987666788999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      ++.++++++.+++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. ..++...  ..++|+++||||.
T Consensus       159 ~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~  235 (387)
T PRK08960        159 ERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--DDDAFVLNSFSKY  235 (387)
T ss_pred             HHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--cCCEEEEeecccc
Confidence            999888888999999999999999999999999999999999999999999988643 3333332  3579999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      |+++|+|+||+++++        +++++++.... ...+++.+.|.++
T Consensus       236 ~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~  275 (387)
T PRK08960        236 FGMTGWRLGWLVAPP--------AAVPELEKLAQNLYISASTPAQHAA  275 (387)
T ss_pred             cCCcccEEEEEEcCH--------HHHHHHHHHHhhhccCCCHHHHHHH
Confidence            999999999999854        47777777654 3557788888753

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=3.2e-42  Score=322.29  Aligned_cols=284  Identities=21%  Similarity=0.332  Sum_probs=224.6

Q ss_pred             ccchhhhcCCcccHHHHHHH---HHhhcccC----CCCCeeeccCCCCCCCC------------CCCC------------
Q 022213           12 EDKQEHKAAPAVTVKTSLAS---IIDSVNKN----DPRPVVPLGYGDPTAFP------------CFRT------------   60 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~---~~~~~~~~----~~~~~i~l~~g~p~~~p------------~~~~------------   60 (301)
                      .++.++...+.+....+...   +.+++.+.    .+.++|+|++|+|+-..            .+..            
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~   88 (481)
T PTZ00377          9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL   88 (481)
T ss_pred             ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence            45566666666666554332   22212111    35799999999984100            0222            


Q ss_pred             -hHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Q 022213           61 -AVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLL  136 (301)
Q Consensus        61 -~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~  136 (301)
                       |..+.+++.++++..  ....|++..|.++||++|++++.+.+|+.+++++|++|+|+++++..++++++ ++||.|++
T Consensus        89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv  168 (481)
T PTZ00377         89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI  168 (481)
T ss_pred             CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence             446777777666542  35679999999999999999999888888999999999999999999999998 79999999


Q ss_pred             cCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          137 PRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       137 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      +.|+|+.|...++..|.+++.++++.+++|.+|+++|++.+++      +++++++++||||||.+++.+++++|+++|+
T Consensus       169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~  248 (481)
T PTZ00377        169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY  248 (481)
T ss_pred             CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999988777899999999998864      6888899999999999999999999999999


Q ss_pred             hCCCeEEEccCCcccccCC-CCCCCcc----ccCCC----CCEEEEecCccc-CCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          211 KLRVMVVADEVYGHLTFGS-IPYTPMG----LFGSI----VPVITLGSISKR-WLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~-~~~~~~~----~~~~~----~~vi~~~s~SK~-~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      +|+++||+||+|..+.|++ ..+.++.    .+...    .++|+++||||. +++||+|+||+++++.+     +++++
T Consensus       249 ~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p-----~~li~  323 (481)
T PTZ00377        249 EKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIP-----PEVRE  323 (481)
T ss_pred             HCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCC-----HHHHH
Confidence            9999999999999999853 3344432    22221    368999999997 58899999999874311     35888


Q ss_pred             HHHhhhcccCCCcccccccC
Q 022213          281 SIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++.+......++++++|.++
T Consensus       324 ~l~~~~~~~~~~~~~~Q~a~  343 (481)
T PTZ00377        324 QIYKLASINLCSNVVGQLMT  343 (481)
T ss_pred             HHHHHhheecCCChHHHHHH
Confidence            88776654557888888764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=8.2e-42  Score=311.54  Aligned_cols=249  Identities=27%  Similarity=0.421  Sum_probs=214.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      .++++++|+.|+|.    +++++.+.+++.+.+......+|++..|.++||+++++|+.+.++..++++ +|++|+|+++
T Consensus        27 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~  102 (383)
T TIGR03540        27 EGVDVISLGIGDPD----LPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE  102 (383)
T ss_pred             cCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHH
Confidence            46899999999974    566788889988877655566899989999999999999998778777776 6999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++..+++.++++||.|++++|+|..+...++..|.+++.+++..++++.+|++++++.+.++++++++++||||||.+++
T Consensus       103 ~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~  182 (383)
T TIGR03540       103 GIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAP  182 (383)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCC
Confidence            99999999999999999999999999999999999999999876667888999999888878999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      .+++++|+++|++|++++|+||+|.++.|++....++..++. ..++|+++||||.|++||+|+||++++.        +
T Consensus       183 ~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~--------~  254 (383)
T TIGR03540       183 LKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNA--------D  254 (383)
T ss_pred             HHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCH--------H
Confidence            999999999999999999999999999887655566655543 3578999999999999999999998743        4


Q ss_pred             HHHHHHhhhc-ccCCCcccccccC
Q 022213          278 IIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       278 ~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +++++..... ...+++.+.|.++
T Consensus       255 l~~~~~~~~~~~~~~~~~~~q~~~  278 (383)
T TIGR03540       255 LIAGLGKVKTNVDSGVFQAIQYAA  278 (383)
T ss_pred             HHHHHHHHHHhcccCCChHHHHHH
Confidence            7777776543 3445666777653

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=8.8e-42  Score=311.55  Aligned_cols=248  Identities=27%  Similarity=0.421  Sum_probs=212.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      .++++|+|+.|+|.    +++++.+.+++.+.+.......|++..|.++||+++++|+.+.+|..++++ +|++|+|+++
T Consensus        29 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~  104 (385)
T PRK09276         29 RGVDVISLGIGDPD----LPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKE  104 (385)
T ss_pred             cCCCEEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            36789999999964    566788899998887654456899988999999999999998888778887 5999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++..+++.++++||+|++++|+|..|...++..|.+++.+++..++++.+|++++++.+.++++++++++||||||.+++
T Consensus       105 ~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  184 (385)
T PRK09276        105 GIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVAD  184 (385)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999876667889999999888778999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      .+++++|+++|++|+++||+||+|.++.+++....++..++. .+++|+++||||.|+++|+|+||++++.        +
T Consensus       185 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~--------~  256 (385)
T PRK09276        185 LEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNA--------D  256 (385)
T ss_pred             HHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCH--------H
Confidence            999999999999999999999999999887655556555543 3568999999999999999999999743        4


Q ss_pred             HHHHHHhhhc-ccCCCccccccc
Q 022213          278 IIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++++... ...+++.+.|.+
T Consensus       257 l~~~~~~~~~~~~~~~~~~~q~~  279 (385)
T PRK09276        257 LIAGLGKVKSNVDSGVFQAIQEA  279 (385)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHH
Confidence            7777776653 344556566654

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.4e-42  Score=313.90  Aligned_cols=246  Identities=24%  Similarity=0.369  Sum_probs=209.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC-CCCC-CEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK-LSAD-DVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~i~~t~g~~  117 (301)
                      .+.++|+|+.|+|.    +.+++.+.+++.+.+.......|++ .|..+||+++|+++.+.+|+. ++++ +|++|+|++
T Consensus        42 ~~~~~i~L~~g~p~----~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~  116 (410)
T PRK06290         42 PDMELIDMGVGEPD----EMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSK  116 (410)
T ss_pred             CCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHH
Confidence            46679999999974    5567788888887765444556876 899999999999999888887 8886 799999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  197 (301)
                      +++..++++++++||.|+++.|+|..|...++..|.+++.++++.+.++.+|++.+++.+.++++++++++||||||.++
T Consensus       117 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~  196 (410)
T PRK06290        117 PALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVA  196 (410)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCC
Confidence            99999999999999999999999999999999999999999997777788899999988887899999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      +.+++++|+++|++|+++||+||+|.++.|++. +.++..+.. .+++|+++||||.|++||+|+||++++.        
T Consensus       197 s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~--------  267 (410)
T PRK06290        197 TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE--------  267 (410)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEeEEeCH--------
Confidence            999999999999999999999999999988653 334433332 3467999999999999999999999743        


Q ss_pred             hHHHHHHhhhc-ccCCCccccccc
Q 022213          277 GIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       277 ~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++++.... ...+++.++|.+
T Consensus       268 ~l~~~l~~~~~~~~~~~~~~~q~a  291 (410)
T PRK06290        268 LIVKAFATVKDNNDSGQFIAIQKA  291 (410)
T ss_pred             HHHHHHHHHHhccccCCcHHHHHH
Confidence            47777776654 344566677765

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=1e-41  Score=312.82  Aligned_cols=280  Identities=24%  Similarity=0.411  Sum_probs=223.5

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.++...+.+.+..+.+... .. +..++++|+|+.|+|..++ +++++.+.+++.+.+.  ....|+++.|.++||+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~g~p~~~~-~~~~~~i~~~~~~~~~--~~~~Y~~~~G~~~lr~~i   81 (404)
T PRK09265          7 SSKLENVCYDIRGPVLKEAK-RL-EEEGHKILKLNIGNPAPFG-FEAPDEILRDVIRNLP--TAQGYSDSKGLFSARKAI   81 (404)
T ss_pred             hHHHHhcCcchhHHHHHHHH-HH-HHcCCCeEEecCCCCCcCC-CCCCHHHHHHHHHHhh--cCCCCCCCCCcHHHHHHH
Confidence            34444455554444444332 23 3457899999999987543 6677888888777654  345799999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      |+++.+....++++++|++|+|+++++..++++++++||+|++++|+|..+...++..|.+++.++++.+.++.+|++++
T Consensus        82 a~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l  161 (404)
T PRK09265         82 MQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDI  161 (404)
T ss_pred             HHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence            99997654447889999999999999999999999999999999999999999999999999888876556678999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      ++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+....++|+++||||.
T Consensus       162 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  241 (404)
T PRK09265        162 RSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKA  241 (404)
T ss_pred             HHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhh
Confidence            99988889999999999999999999999999999999999999999999999876555666665555578999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      |++||+|+||++++.+..+.  +++++.++.......+++.++|.++
T Consensus       242 ~~~pGlRiG~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~~~  286 (404)
T PRK09265        242 YRVAGFRVGWMVLSGPKKHA--KGYIEGLDMLASMRLCANVPAQHAI  286 (404)
T ss_pred             ccCcccceEEEEEeCchHHH--HHHHHHHHHHhccccCCCcHHHHHH
Confidence            99999999999986443111  1244555443333456777888753

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-41  Score=309.72  Aligned_cols=266  Identities=23%  Similarity=0.407  Sum_probs=218.7

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .+........++.+.+...      ..+++|+|+.|+|.    +++++.+.+++.+.... ....|+++.|..+||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia   76 (384)
T PRK06348          8 KKYQQMEVNIMAEIATLAK------KFPDIIDLSLGDPD----LITDESIINAAFEDAKK-GHTRYTDSGGDVELIEEII   76 (384)
T ss_pred             HHHhcCCccHHHHHHHHHH------hcCCcEEcCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHH
Confidence            3444455555555554321      13578999999975    45566666655554433 3457999999999999999


Q ss_pred             HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213           95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +++.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.+++..++++.+|++.++
T Consensus        77 ~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  156 (384)
T PRK06348         77 KYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLE  156 (384)
T ss_pred             HHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHH
Confidence            99998888889999999999999999999999999999999999999999999999999999988765667889999999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~  253 (301)
                      +.++++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++ ...++..+.. .+++|+++||||.
T Consensus       157 ~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~  235 (384)
T PRK06348        157 ALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKD  235 (384)
T ss_pred             HhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhc
Confidence            9888888999999999999999999999999999999999999999999998864 3344444442 4689999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      |++||+|+||+++++        +++++++.... ...+++.+.|.++
T Consensus       236 ~~l~GlRiG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~  275 (384)
T PRK06348        236 FAMTGWRIGYVIAPD--------YIIETAKIINEGICFSAPTISQRAA  275 (384)
T ss_pred             cCCccccceeeecCH--------HHHHHHHHHHHhccCCCCHHHHHHH
Confidence            999999999999853        47777776654 3446788888764

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.8e-41  Score=311.17  Aligned_cols=272  Identities=22%  Similarity=0.372  Sum_probs=217.3

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .++.......+..+.+ ....+ +..++++|+|+.|+|.    +++++.+.+++.+.+......+|++..|..+||++++
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia   78 (405)
T PRK09148          5 HRIRRLPPYVFEQVNR-LKAAA-RAAGADIIDLGMGNPD----LPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQA   78 (405)
T ss_pred             hhhhcCCccHHHHHHH-HHHHH-HhcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHH
Confidence            3344455555555533 22222 2346789999999974    5567788888887775545668999899999999999


Q ss_pred             HHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           95 DYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        95 ~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      +++.+++|..++++ +|++|+|+++++..++++++++||.|++++|+|..+...++..|.+++.+++..+..+..++++.
T Consensus        79 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~  158 (405)
T PRK09148         79 AYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERA  158 (405)
T ss_pred             HHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHH
Confidence            99988778888887 89999999999999999999999999999999999988889999999999986655554555554


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK  252 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK  252 (301)
                      .+....+++.+++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++..++. .+++|+++||||
T Consensus       159 ~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK  238 (405)
T PRK09148        159 VRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSK  238 (405)
T ss_pred             HhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccc
Confidence            4434457889999999999999999999999999999999999999999999987655555555443 346789999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      .|++||+|+||++++.        ++++++++... ...+++.++|.++
T Consensus       239 ~~~~pGlR~G~~v~~~--------~~i~~l~~~~~~~~~~~~~~~q~~~  279 (405)
T PRK09148        239 TFSMAGWRMGFAVGNE--------RLIAALTRVKSYLDYGAFTPIQVAA  279 (405)
T ss_pred             ccCCcchheeeeeCCH--------HHHHHHHHHHHHhccCCChHHHHHH
Confidence            9999999999999743        48888877654 3456777888764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=2.9e-41  Score=308.83  Aligned_cols=266  Identities=24%  Similarity=0.414  Sum_probs=217.3

Q ss_pred             cCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213           19 AAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS   98 (301)
Q Consensus        19 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~   98 (301)
                      ..+.+.+.++.+.+. ......+.++|+|+.|+|.    +++|+.+.+++.+.+.  ....|+++.|.++||+++|+|+.
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~   78 (393)
T TIGR03538         6 RLQPYPFEKLAALLA-GVTPPASKPPIALSIGEPK----HPTPAFVLEALRENLH--GLSTYPTTKGLPELRQAIARWLE   78 (393)
T ss_pred             hCCccHHHHHHHHHH-hhhhhcCCCeEEecCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHH
Confidence            345556666665432 2212246899999999974    5667889999887764  45689999999999999999999


Q ss_pred             hhCCCC--CCCC-CEEEcCCHHHHHHHHHHHhcCCCCE--EEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           99 RDLPYK--LSAD-DVYVTLGCKQAVEVILSVLARPGAN--VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        99 ~~~~~~--~~~~-~i~~t~g~~~al~~~~~~l~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      +.++..  ++++ +|++|+|+++++..++++++++||.  |++++|+|..|...++..|++++.+++..+++|.+|++++
T Consensus        79 ~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  158 (393)
T TIGR03538        79 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV  158 (393)
T ss_pred             HhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHH
Confidence            877765  6775 7999999999999999999999986  9999999999999999999999999987677788999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCc-cc---cC--CCCCEEE
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPM-GL---FG--SIVPVIT  246 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~-~~---~~--~~~~vi~  246 (301)
                      ++.+.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. .+.+. ..   ..  ...++|+
T Consensus       159 ~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  238 (393)
T TIGR03538       159 PESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLV  238 (393)
T ss_pred             HHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEE
Confidence            988877899999999999999999999999999999999999999999999988642 22221 11   11  2357999


Q ss_pred             EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++||||.|++||+|+||++++.        ++++++++... ...+++.+.|.+
T Consensus       239 i~S~SK~~~~~GlRvG~~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~  284 (393)
T TIGR03538       239 FHSLSKRSNLPGLRSGFVAGDA--------EILKAFLRYRTYHGCAMPIPTQLA  284 (393)
T ss_pred             EecchhhcCCcccceEEEecCH--------HHHHHHHHHHHhhccCcCHHHHHH
Confidence            9999999999999999998743        47777776654 344667777765

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=7.2e-41  Score=305.25  Aligned_cols=246  Identities=24%  Similarity=0.422  Sum_probs=211.5

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~a  119 (301)
                      .+++|+|+.|+|.    +++++.+.+++.+.+... ..+|++..|..+||+++++++.+.+|...++ ++|++|+|++++
T Consensus        28 ~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~a  102 (384)
T PRK12414         28 QHDALNLSQGAPN----FAPDPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEG  102 (384)
T ss_pred             hCCeEEcCCCCCC----CCCCHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHH
Confidence            4679999999974    566788889888877643 3579998999999999999999887877665 689999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++++++++||+|++++|+|..+...++..|.+++.++++. .++.+|++.+++.++++++++++++||||||.+++.
T Consensus       103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~  181 (384)
T PRK12414        103 LYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSA  181 (384)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCH
Confidence            9999999999999999999999999999999999999998754 357799999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++|++++|+||+|.++.|++....++..+.. .+++|+++||||.|++||+|+||+++++        ++
T Consensus       182 ~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~--------~l  253 (384)
T PRK12414        182 ADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA--------EL  253 (384)
T ss_pred             HHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH--------HH
Confidence            99999999999999999999999999987654445554433 4579999999999999999999999854        47


Q ss_pred             HHHHHhhhc-ccCCCcccccccC
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++++..... ...+++.+.|.++
T Consensus       254 ~~~l~~~~~~~~~~~s~~~q~a~  276 (384)
T PRK12414        254 MDEIRKVHQFMVFSADTPMQHAF  276 (384)
T ss_pred             HHHHHHHHhheecCCCcHHHHHH
Confidence            777777654 3457788888764

>PLN02231 alanine transaminase

Probab=100.00  E-value=7e-41  Score=314.40  Aligned_cols=265  Identities=21%  Similarity=0.334  Sum_probs=213.7

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--C-CCCCCCCCCCCHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--G-KFNCYATNSGIPPARRAI   93 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~i   93 (301)
                      ..+.++.-+++++..+       ..+++|+|+.+.+.    |+.  .+.+.+.+.+..  + ...+|+++.|.++||++|
T Consensus       111 ~~~~~~~~~r~v~~~~-------~~p~~i~~~~~~~~----fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaI  177 (534)
T PLN02231        111 LGQQPITFFREVLALC-------DHPSLLDKSETHGL----FSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAI  177 (534)
T ss_pred             cCCCccHHHHHHHHhc-------cCCccCCCCCcccc----CCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHH
Confidence            3444555555555422       24689999866542    333  444444556654  2 366899999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      |+|+.+++|..+++++|++|+|+++++..++++++. +||.|+++.|+|+.|...++..|.+++.++++.+++|++|+++
T Consensus       178 A~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~  257 (534)
T PLN02231        178 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISE  257 (534)
T ss_pred             HHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHH
Confidence            999999888899999999999999999999999984 8999999999999999999999999999999877789999999


Q ss_pred             HHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccC------
Q 022213          173 VEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFG------  239 (301)
Q Consensus       173 l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~------  239 (301)
                      |++.+++      ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+ +..+.++..+.      
T Consensus       258 Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~  337 (534)
T PLN02231        258 LKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG  337 (534)
T ss_pred             HHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccc
Confidence            9998754      5788999999999999999999999999999999999999999999995 34555554432      


Q ss_pred             -CCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          240 -SIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       240 -~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                       .+.++|+++||||.+ ++||+|+||+++++.+     +++++++.+..+...|++.+.|.+
T Consensus       338 ~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~-----~~l~~~l~k~~~~~~~s~~~~Q~~  394 (534)
T PLN02231        338 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFT-----SDVREQIYKVASVNLCSNISGQIL  394 (534)
T ss_pred             cCCceEEEEeccCcccccCCccceEEEEEecCC-----HHHHHHHHHHHhhhcCCChHHHHH
Confidence             123689999999975 7899999999875421     357787777655556777777764

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-40  Score=302.00  Aligned_cols=272  Identities=23%  Similarity=0.260  Sum_probs=226.3

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      ++...+.+..++++.+.+.. + ++.+.+.|+|+.|+|.    +++++.+.+++.+.+.......|++..|.++||++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia   77 (386)
T PRK07550          4 PLIAALFPPPIPEVRAWLAG-Y-DGADGPLIDLSQAVPG----YPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYA   77 (386)
T ss_pred             hhhhhcCChHHHHHHHHHHH-H-hhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHH
Confidence            45555667788888775432 3 2346789999999975    4557788888888775445567988889999999999


Q ss_pred             HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213           95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +++.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.++++.+|++.++
T Consensus        78 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~  157 (386)
T PRK07550         78 AHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAE  157 (386)
T ss_pred             HHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHH
Confidence            99998888888999999999999999999999999999999999999999999999999999999876667788999999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~  253 (301)
                      +.++++++++++++||||||.+++.+++++|+++|+++|++||+|++|.++.++.....++... +...++++++||||.
T Consensus       158 ~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  237 (386)
T PRK07550        158 ALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKS  237 (386)
T ss_pred             HHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhh
Confidence            9998889999999999999999999999999999999999999999999987654333333222 234579999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++++|+|+||+++++        +++++++.... ...+++.++|.++
T Consensus       238 ~g~~G~RiG~i~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~  277 (386)
T PRK07550        238 YALTGHRVGAVVASP--------ARIAEIEKFMDTVAICAPRIGQIAV  277 (386)
T ss_pred             ccCcccceEeeecCH--------HHHHHHHHHHhhcccCCCcHHHHHH
Confidence            999999999999843        47777777654 4556788888764

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=3.7e-41  Score=308.37  Aligned_cols=277  Identities=22%  Similarity=0.232  Sum_probs=209.1

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCCh--HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTA--VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      +...+++.+..+...+..    ...+++|+|+.|.|.. |.+..|  +.+.+++.+.++.....+|++..|.++||++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~g~~~~-~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia   79 (396)
T PRK09257          5 LEAAPADPILGLMEAFRA----DPRPDKVNLGVGVYKD-EQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQ   79 (396)
T ss_pred             CCCCCCChHHHHHHHHhh----CCCcCcEecceeeEEC-CCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHH
Confidence            345667777776654422    1245789999996421 222333  678888887765545558999999999999999


Q ss_pred             HHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           95 DYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVL--ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      +|+.+..+..+++++|  ++|+|+++|+..+++.+  +++||+|++++|+|+.|...++..|++++.+++...+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~  159 (396)
T PRK09257         80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF  159 (396)
T ss_pred             HHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence            9997765555678887  99999999999998776  4899999999999999999999999999999874444578999


Q ss_pred             HHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccCC-CCCEE
Q 022213          171 DAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFGS-IVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~~-~~~vi  245 (301)
                      +.+++.++.   +++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++ +....++..+.. ..++|
T Consensus       160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi  239 (396)
T PRK09257        160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELL  239 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEE
Confidence            999988752   3455666999999999999999999999999999999999999999875 222334433332 35799


Q ss_pred             EEecCcccCCCCcceeEEEEeeCC-CCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          246 TLGSISKRWLVPGWRFGWLVTNDP-NGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +++||||.|+++|+|+||+++..+ ...+  .+++.+++.... ...+++.+.|.++
T Consensus       240 ~i~SfSK~~~~~GlRiG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~q~~~  294 (396)
T PRK09257        240 VASSFSKNFGLYGERVGALSVVAEDAEEA--DRVLSQLKATIRTNYSNPPAHGAAIV  294 (396)
T ss_pred             EEEEcCCcCccccccceeEEEEeCCHHHH--HHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            999999999999999999985221 1000  124444444332 3445677777653

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=2e-40  Score=302.95  Aligned_cols=268  Identities=22%  Similarity=0.393  Sum_probs=221.7

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .++.....+.++.+.+.+. ++ +..++++++|+.|+|.    +++++.+.+++.+.+.. ....|++..|..+||+++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia   77 (388)
T PRK07337          5 ARVDAIEPFYVMELAKEAQ-AL-ERAGRDIIHMGIGEPD----FTAPEPVVEAAARALRR-GVTQYTSALGLAPLREAIA   77 (388)
T ss_pred             hHhHhcCchHHHHHHHHHH-HH-HhcCCCEEEeCCcCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHH
Confidence            3444445555555554332 23 2346789999999974    55677888888887764 3457998889999999999


Q ss_pred             HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHH
Q 022213           95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +|+.+.++..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.++++.+|+++++
T Consensus        78 ~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  157 (388)
T PRK07337         78 AWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVE  157 (388)
T ss_pred             HHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHH
Confidence            99998888888999999999999999999999999999999999999999988999999999999876667889999999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  254 (301)
                      +.++++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++. +.+...+  ..++|+++||||.|
T Consensus       158 ~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~  234 (388)
T PRK07337        158 AAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--GDDVITINSFSKYF  234 (388)
T ss_pred             hhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--cCCEEEEEechhhc
Confidence            99988899999999999999999999999999999999999999999999888653 2222222  35789999999999


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++||+|+||+++++        +++++++.... ...+++.++|.++
T Consensus       235 ~~~G~RiG~~~~~~--------~l~~~l~~~~~~~~~~~s~~~q~~~  273 (388)
T PRK07337        235 NMTGWRLGWLVVPE--------ALVGTFEKLAQNLFICASALAQHAA  273 (388)
T ss_pred             CCchhheeeeecCH--------HHHHHHHHHHHHhccCCChHHHHHH
Confidence            99999999999853        47777776653 3456788888663

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=6.3e-40  Score=299.33  Aligned_cols=266  Identities=22%  Similarity=0.418  Sum_probs=221.3

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+++......+.++...+.      ..+++|+|+.|+|.    +++++.+.+++.+.+... ...|++..|..+||+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~i   74 (387)
T PRK07683          6 NPRVKDIQISGIRQFSNMVQ------NYDNLISLTIGQPD----FPTPSHVKEAAKRAITEN-YTSYTHNAGLLELRKAA   74 (387)
T ss_pred             hHHHHhCCccHHHHHHHHHH------hcCCeEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence            34566667777777665332      14678999999964    556778889988887643 45799889999999999


Q ss_pred             HHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++++.+.+++.++++ +|++|+|+++|+.+++++++++||.|++++|+|..|...++..|.++++++.+. +++.++.+.
T Consensus        75 a~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~  153 (387)
T PRK07683         75 CNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEA  153 (387)
T ss_pred             HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHH
Confidence            999988788888898 999999999999999999999999999999999999999999999999998753 567789999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~S  251 (301)
                      +++.++++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++..+ +..+++|+++|||
T Consensus       154 l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~S  232 (387)
T PRK07683        154 LENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLS  232 (387)
T ss_pred             HHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeecc
Confidence            9998888889999999999999999999999999999999999999999999988653 3344444 2345799999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCcccccccC
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVCE  300 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~  300 (301)
                      |.|++||+|+||++++.        ++++++...... ..+++.++|.++
T Consensus       233 K~~~~pGlRiG~i~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~  274 (387)
T PRK07683        233 KSHSMTGWRIGFLFAPS--------YLAKHILKVHQYNVTCASSISQYAA  274 (387)
T ss_pred             ccccCccceeEEEEcCH--------HHHHHHHHHHHhccCCCChHHHHHH
Confidence            99999999999999743        477777765432 345677777653

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=2.6e-40  Score=301.12  Aligned_cols=245  Identities=25%  Similarity=0.470  Sum_probs=209.1

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAV  120 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al  120 (301)
                      +++|+|+.|+|.    +++++.+.+++.+.+.. ....|++..|..+||+++++++.+.++..++++ +|++|+|+++++
T Consensus        20 ~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al   94 (378)
T PRK07682         20 EGVISLGVGEPD----FVTPWNVREASIRSLEQ-GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQAL   94 (378)
T ss_pred             CCeEEeCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence            579999999975    45566778888777764 345799888999999999999998888878876 799999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .+++++++++||+|++++|+|..|...++..|.+++.+++..++++.+|++++++.++++++++++++||||||.+++.+
T Consensus        95 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~  174 (378)
T PRK07682         95 DVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKS  174 (378)
T ss_pred             HHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHH
Confidence            99999999999999999999999999999999999999876656788999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|+++|++|++++|+||+|.++.|++. +.++..+.. ..++++++||||.|++||+|+||++++.        +++
T Consensus       175 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~i  245 (378)
T PRK07682        175 ELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV--------YFS  245 (378)
T ss_pred             HHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH--------HHH
Confidence            999999999999999999999999998753 334434332 3579999999999999999999999743        477


Q ss_pred             HHHHhhhc-ccCCCcccccccC
Q 022213          280 DSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       280 ~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++++.... ...+++.+.|.++
T Consensus       246 ~~l~~~~~~~~~~~~~~~q~a~  267 (378)
T PRK07682        246 EAMLKIHQYSMMCAPTMAQFAA  267 (378)
T ss_pred             HHHHHHHHhhccCCCHHHHHHH
Confidence            88776654 2346777888653

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=2.4e-40  Score=304.24  Aligned_cols=231  Identities=20%  Similarity=0.251  Sum_probs=190.6

Q ss_pred             HHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCCCCCCHHHHHHHHHHHhhhCC
Q 022213           27 TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYATNSGIPPARRAIADYLSRDLP  102 (301)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~  102 (301)
                      .+...+.+......++++++|+.|+|.    +++++.+.+++.+++..    .....|++..|.++||+++|+++.+.++
T Consensus        19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g   94 (409)
T PRK07590         19 EIARRVNAFREANPEAKIIRLGIGDVT----QPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARG   94 (409)
T ss_pred             HHHHHHHHHhhhcCCCceEEecCcCCC----CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            444433333323335689999999974    56678888888887764    2456898889999999999999988888


Q ss_pred             CCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCce-----------EEEeecCCCCCCCCCHH
Q 022213          103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE-----------VRHFDLLPERNWEVDLD  171 (301)
Q Consensus       103 ~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~  171 (301)
                      .++++++|++|+|+++++..+. .++++||+|++++|+|..|...++..|.+           ++.++++.++++..+.+
T Consensus        95 ~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~  173 (409)
T PRK07590         95 CDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP  173 (409)
T ss_pred             CcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc
Confidence            8899999999999999999865 55689999999999999999999999986           88888865555555532


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecC
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSI  250 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~  250 (301)
                            .++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+.++..++.. .++|+++||
T Consensus       174 ------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf  247 (409)
T PRK07590        174 ------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSF  247 (409)
T ss_pred             ------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecC
Confidence                  2478999999999999999999999999999999999999999999998876544555555443 469999999


Q ss_pred             cccCCCCcceeEEEEeeC
Q 022213          251 SKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~  268 (301)
                      ||.|++||+|+||+++++
T Consensus       248 SK~~~~pGlRiG~~i~~~  265 (409)
T PRK07590        248 SKTAGFTGTRCAYTVVPK  265 (409)
T ss_pred             ccccCCcCceeEEEEcCH
Confidence            999999999999999854

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=5.6e-40  Score=300.87  Aligned_cols=252  Identities=29%  Similarity=0.542  Sum_probs=209.8

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++|+|+.|.|... .+++++.+.+++.+.+... ...|++..|..+||+++++|+.+.+++.+++++|++|+|++++
T Consensus        28 ~~~~~i~l~~g~p~~~-~~~p~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a  105 (398)
T PRK08363         28 KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEA  105 (398)
T ss_pred             cCCCeEEEeCCCCCcC-CCCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence            4679999999998531 4677889999998887643 3469888899999999999999888888999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++.+++++||.|++++|+|..+...++..|.+++.++...++++.+|++.+++.++++++++++++||||||.+++.
T Consensus       106 l~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~  185 (398)
T PRK08363        106 LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEK  185 (398)
T ss_pred             HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCH
Confidence            99999999999999999999999999999999998888743334567799999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|+++|+++|+|++|.++.|++ .+.++..+....++|+++||||.|++||+|+||+++.++.      +++
T Consensus       186 ~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~------~~~  258 (398)
T PRK08363        186 KTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPE------GKL  258 (398)
T ss_pred             HHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcH------HHH
Confidence            999999999999999999999999998865 3344555555568999999999999999999999973322      244


Q ss_pred             HHHHhh----hcccCCCcccccccC
Q 022213          280 DSIKDC----LSIYSDIPTFIQVCE  300 (301)
Q Consensus       280 ~~~~~~----~~~~~~~~~~~q~~~  300 (301)
                      +.++..    .....+++.++|.++
T Consensus       259 ~~l~~~~~~~~~~~~~~s~~~q~~~  283 (398)
T PRK08363        259 AEVREAIDKLARIRLCPNTPAQFAA  283 (398)
T ss_pred             HHHHHHHHHHhcccccCChHHHHHH
Confidence            444333    222346777877653

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-40  Score=301.57  Aligned_cols=248  Identities=25%  Similarity=0.411  Sum_probs=214.8

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++++|+.|.|.    +++++.+.+++.+.+... ..+|++..|.++||+++++++.+.++..+.+++|++|+|+++|
T Consensus        31 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a  105 (402)
T PRK06107         31 AGRSIVDLTVGEPD----FDTPDHIKQAAVAAIERG-ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQA  105 (402)
T ss_pred             ccCCEEEcCCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence            36789999999974    566788889988888643 3479999999999999999999888888889999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++.+++++||.|++++|+|..|...+...+..++.++++.++++.++++.+++.++++++++++++|+||||.+++.
T Consensus       106 l~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~  185 (402)
T PRK06107        106 IFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSR  185 (402)
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCH
Confidence            99999999999999999999999998888888888888887656678899999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          200 HHLQEIAEMARKL-RVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       200 ~~l~~i~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      +++++|+++|+++ ++++|+||+|.++.|++..+.++..+..  .+++|+++||||.|++||+|+||++++.        
T Consensus       186 ~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~--------  257 (402)
T PRK06107        186 AELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA--------  257 (402)
T ss_pred             HHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH--------
Confidence            9999999999998 9999999999999887655555555533  3589999999999999999999999743        


Q ss_pred             hHHHHHHhhhc-ccCCCcccccccC
Q 022213          277 GIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       277 ~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +++++++.... ...+++.++|.++
T Consensus       258 ~~~~~~~~~~~~~~~~~s~~~q~~~  282 (402)
T PRK06107        258 DLIAAINKLQSQSSSCPSSISQAAA  282 (402)
T ss_pred             HHHHHHHHHHHhcccCCChHHHHHH
Confidence            47888887765 3567888888764

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=4e-40  Score=299.28  Aligned_cols=242  Identities=22%  Similarity=0.369  Sum_probs=200.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|+|.    +++++.+.+++.+...  ....|+++.|..+||+++++++.+.+|..+++++|++|+|+++++
T Consensus        23 ~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al   96 (374)
T PRK05839         23 EYKGLDLTIGEPQ----FETPKFIQDALKNNAH--LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL   96 (374)
T ss_pred             CCCeEEcCCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence            6699999999974    5667888888876653  356899999999999999999998888889999999999999999


Q ss_pred             HHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          121 EVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       121 ~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ..+++.++  ++||.|+++.|+|..|...++..|++++.++++.+++|.+|+++.+  + ++++++++++||||||.+++
T Consensus        97 ~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s  173 (374)
T PRK05839         97 FNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLS  173 (374)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccC
Confidence            99988874  4799999999999999999999999999999876667777765443  2 36899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc------CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF------GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI  272 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~------~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~  272 (301)
                      .+++++|+++|+++|++||+||+|.++.+++ .+.++...      ...+++|+++||||.|++||+|+||++++.    
T Consensus       174 ~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~----  248 (374)
T PRK05839        174 LEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA----  248 (374)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH----
Confidence            9999999999999999999999999986543 33332221      123589999999999999999999999742    


Q ss_pred             ccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          273 FQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                          +++++++.... ...+++.+.|.++
T Consensus       249 ----~~~~~~~~~~~~~~~~~~~~~q~~~  273 (374)
T PRK05839        249 ----SILKKYKAYRTYLGCASPLPLQKAA  273 (374)
T ss_pred             ----HHHHHHHHHHhhcCCCCChHHHHHH
Confidence                47788777643 3456777777653

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=8.6e-40  Score=298.61  Aligned_cols=262  Identities=24%  Similarity=0.389  Sum_probs=214.3

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY   96 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~   96 (301)
                      +...+...+..+.+..       ...++|+|+.|.|.    .+.|+.+.+++.+.+... ...|++..|.++||++++++
T Consensus         8 ~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~   75 (387)
T PRK08912          8 FADLPTTIFEVMSQLA-------REHGAINLGQGFPD----DPGPEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAH   75 (387)
T ss_pred             HhhCCCCHHHHHHHHH-------hhCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHH
Confidence            3344555554444422       13689999999975    344667777777766533 45799999999999999999


Q ss_pred             HhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh
Q 022213           97 LSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus        97 l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      +.+.++..++++ +|++|+|+++++..++..++++||+|++++|+|..+...++..|.+++.++++. .++.++++.+++
T Consensus        76 ~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~  154 (387)
T PRK08912         76 YARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAA  154 (387)
T ss_pred             HHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHH
Confidence            998888888998 999999999999999999999999999999999999999999999999998753 357799999999


Q ss_pred             hcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccC
Q 022213          176 LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRW  254 (301)
Q Consensus       176 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~  254 (301)
                      .++.+++++++++||||||.+++.+++++|+++|++|++++|+||+|.++.|++....++..+.. .+++|+++||||.|
T Consensus       155 ~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  234 (387)
T PRK08912        155 AFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIF  234 (387)
T ss_pred             HhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhc
Confidence            98888899999999999999999999999999999999999999999999887644445444433 35799999999999


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                      +++|+|+||++++.        +++++++..... ..+++...|.+
T Consensus       235 g~~GlRiG~~~~~~--------~~~~~l~~~~~~~~~~~~~~~q~~  272 (387)
T PRK08912        235 SLTGWKVGFVCAAP--------PLLRVLAKAHQFLTFTTPPNLQAA  272 (387)
T ss_pred             cCcCceeEEEecCH--------HHHHHHHHHHhhccccCChHHHHH
Confidence            99999999999843        477777666542 33455556654

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.7e-40  Score=300.16  Aligned_cols=266  Identities=25%  Similarity=0.455  Sum_probs=221.1

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+........++++.+...      ..+++|+|+.|+|.    +++++.+.+++.+.++.. ...|.+..|..+||+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~i   79 (391)
T PRK08361         11 AGRINLIQRSKIRELFERAS------KMENVISLGIGEPD----FDTPKNIKEAAKRALDEG-WTHYTPNAGIPELREAI   79 (391)
T ss_pred             hHHHHhCCccHHHHHHHHHH------hhcCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHH
Confidence            45555556666666654321      13579999999975    555788889888877643 34698888999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++++.+.+|.++++++|++|+|+++++..++.+++++||.|++++|+|..+...+...|.+++.++++.++++.+|++.+
T Consensus        80 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  159 (391)
T PRK08361         80 AEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDEL  159 (391)
T ss_pred             HHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHH
Confidence            99998877888899999999999999999999999999999999999999999999999999999987766788999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      ++.++++++++++++|+||||.+++.+++++|+++|+++++++|+||+|.++.+++....++..+.. .++|+++||||.
T Consensus       160 ~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~  238 (391)
T PRK08361        160 LELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKT  238 (391)
T ss_pred             HHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchh
Confidence            9999888999999999999999999999999999999999999999999999886544444444332 478999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |+++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       239 ~~~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~  277 (391)
T PRK08361        239 FAMTGWRLGFVIAPE--------QVIKDMIKLHAYIIGNVASFVQIA  277 (391)
T ss_pred             cCCcHhhhhhhccCH--------HHHHHHHHHHhhhccCCChHHHHH
Confidence            999999999999853        47777766543 344667777765

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-39  Score=296.99  Aligned_cols=262  Identities=27%  Similarity=0.404  Sum_probs=217.3

Q ss_pred             cCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 022213           19 AAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS   98 (301)
Q Consensus        19 ~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~   98 (301)
                      ......++++.....      ..+++|+|+.|+|.    +++++.+.+++.+.+.+.. ..|++..|.++||+++++++.
T Consensus         7 ~~~~~~~~~~~~~~~------~~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~   75 (382)
T PRK06108          7 ALPESGIREVANAGR------GREGVLPLWFGESD----LPTPDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVS   75 (382)
T ss_pred             hCCchHHHHHHHHHh------ccCCeEEecCCCCC----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHH
Confidence            344455555544321      13579999999974    6778899999988877543 369998999999999999999


Q ss_pred             hhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhc
Q 022213           99 RDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALA  177 (301)
Q Consensus        99 ~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~  177 (301)
                      +.++..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|++++.++++.+ .+|.+|++.+++.+
T Consensus        76 ~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~  155 (382)
T PRK06108         76 RLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI  155 (382)
T ss_pred             HHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence            87888889999999999999999999999999999999999999999999999999999998653 46779999999998


Q ss_pred             ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC-CCCCCCccccC-CCCCEEEEecCcccCC
Q 022213          178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG-SIPYTPMGLFG-SIVPVITLGSISKRWL  255 (301)
Q Consensus       178 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~-~~~~vi~~~s~SK~~~  255 (301)
                      +++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++ +....++..+. ...++++++||||.|+
T Consensus       156 ~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  235 (382)
T PRK06108        156 TPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWA  235 (382)
T ss_pred             CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhcc
Confidence            878899999999999999999999999999999999999999999999886 33333333332 3467999999999999


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       236 ~~G~RiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a  272 (382)
T PRK06108        236 MTGWRLGWLVAPP--------ALGQVLEKLIEYNTSCVAQFVQRA  272 (382)
T ss_pred             CcccceeeeeCCH--------HHHHHHHHHHHhcccCCChHHHHH
Confidence            9999999999843        47777766543 244677777765

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=6.7e-40  Score=295.43  Aligned_cols=241  Identities=28%  Similarity=0.408  Sum_probs=205.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVE  121 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~  121 (301)
                      .+++|+.|+|.    +++++.+.+++.+...  ...+|+++.|..+||+++++|+.+.+|++++++ +|++|+|+++++.
T Consensus         1 ~~~~~~~g~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~   74 (350)
T TIGR03537         1 RLFDFGTGDPK----EPTPPFIRKALIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIF   74 (350)
T ss_pred             CeEeccCCCCC----CCCCHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence            36899999974    6667888899887764  456899989999999999999998888889998 9999999999999


Q ss_pred             HHHHHhcCCC---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          122 VILSVLARPG---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       122 ~~~~~l~~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      .++.+++++|   |.|+++.|+|..|...++..|++++.+++.+++++.+|++.++++++++++++++++||||||.+++
T Consensus        75 ~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~  154 (350)
T TIGR03537        75 HFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAP  154 (350)
T ss_pred             HHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccC
Confidence            9999999887   6999999999999999999999999999876677889999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .+++++|+++|+++|+++|+||+|.++.+++ ...++..++ .+++|+++||||.++++|+|+||++++.        ++
T Consensus       155 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~--------~~  224 (350)
T TIGR03537       155 RSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGDE--------KL  224 (350)
T ss_pred             HHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-cCCEEEEeecccccCCccccceeeecCH--------HH
Confidence            9999999999999999999999999987754 333333333 3589999999999999999999998632        47


Q ss_pred             HHHHHhhhc-ccCCCccccccc
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +.+++.... ...+++.+.|.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~q~~  246 (350)
T TIGR03537       225 ISFLRKLRANFGVASPDFVQAA  246 (350)
T ss_pred             HHHHHHHHHhhccCCCHHHHHH
Confidence            777776643 233455556654

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-39  Score=294.68  Aligned_cols=245  Identities=24%  Similarity=0.354  Sum_probs=210.0

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAV  120 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~al  120 (301)
                      +++++|+.|.|.    +++++.+.+++.+.+.......|++..|.+++|+++++++.+.++..++ +++|++|+|+++++
T Consensus        27 ~~~~~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l  102 (389)
T PRK05957         27 PGTISLGQGVVS----YPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF  102 (389)
T ss_pred             CCeEEccCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence            578999999974    6678889999988776555567999899999999999999988887776 77899999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++.+++++||+|++++|+|..+...++..|++++.++.+  .++.+|++++++.++++++++++++||||||.+++.+
T Consensus       103 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~  180 (389)
T PRK05957        103 MNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEA  180 (389)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHH
Confidence            99999999999999999999999988888999999999874  4567999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|+++|+++|+++|+||+|.++.|++....+...+ +...++|+++||||.|++||+|+||+++++        +++
T Consensus       181 ~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------~~~  252 (389)
T PRK05957        181 LLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI--------HLL  252 (389)
T ss_pred             HHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH--------HHH
Confidence            99999999999999999999999999865333333332 344589999999999999999999999743        488


Q ss_pred             HHHHhhhc-ccCCCcccccccC
Q 022213          280 DSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       280 ~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++++.... ...+++.+.|.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~q~~~  274 (389)
T PRK05957        253 EAIKKIQDTILICPPVVSQYAA  274 (389)
T ss_pred             HHHHHHHhhcccCCCcHHHHHH
Confidence            88887664 3456777888763

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-40  Score=305.13  Aligned_cols=246  Identities=24%  Similarity=0.370  Sum_probs=213.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CC-CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GK-FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~-~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+.+++|+.|.|+.  .+.+-....+++.+.++.  .. ...|.++.|..+||+++++++...+|+.+++++|++|+|++
T Consensus        88 ~~~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q  165 (459)
T COG1167          88 DPSVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ  165 (459)
T ss_pred             CCceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence            37899999998763  344556667777777653  22 56888889999999999999997799999999999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEE-cCCCCCccc
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVI-INPGNPCGN  195 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l-~~p~nptG~  195 (301)
                      +|++++++.+++|||+|++++|+|.+...+++.+|++++.+|++   ..++|++.|++.++. ++|++++ .+.+||||.
T Consensus       166 ~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~  242 (459)
T COG1167         166 QALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGV  242 (459)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCC
Confidence            99999999999999999999999999999999999999999985   334999999999876 4666544 456999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~  275 (301)
                      +++.+++++|+++|++||++||+||.|+++.|++.+..++..++..++||+++||||+ .+||+|+||+++|.       
T Consensus       243 tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l~PglRlG~vv~p~-------  314 (459)
T COG1167         243 TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRLGYVVAPP-------  314 (459)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-cccccceeeeeCCH-------
Confidence            9999999999999999999999999999999998878788889888999999999999 68999999999864       


Q ss_pred             hhHHHHHHhhhc-ccCCCcccccccC
Q 022213          276 SGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       276 ~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                       ++++++..... ...+++.++|.++
T Consensus       315 -~~~~~~~~~k~~~~~~~s~~~Q~~l  339 (459)
T COG1167         315 -ELIEKLLRLKQAADLGPSSLSQAAL  339 (459)
T ss_pred             -HHHHHHHHHHHHhcCCCChHHHHHH
Confidence             47888877754 4668899998775

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-40  Score=303.04  Aligned_cols=278  Identities=17%  Similarity=0.189  Sum_probs=202.9

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      +...+.+.++.+.+.+.    +...+++|+|+.|.|. ..|.....+.+.+++.+........+|++..|.++||+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~   83 (404)
T PTZ00376          8 VPLGPPDPILGLAAAFK----ADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK   83 (404)
T ss_pred             CCcCCCChHHHHHHHHh----hcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence            44456677777766442    1224688999999862 211111223344444333333345689999999999999999


Q ss_pred             HHhhhCCCCCCCCCEE--EcCCHHHHHHHHHH---HhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           96 YLSRDLPYKLSADDVY--VTLGCKQAVEVILS---VLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~--~t~g~~~al~~~~~---~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      |+.+..+..+++++|+  .|.|+++++..++.   +++++||+|++++|+|+.|...++..|++++.+++..++++++|+
T Consensus        84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~  163 (404)
T PTZ00376         84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF  163 (404)
T ss_pred             HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence            9976555567888998  59999999988875   667999999999999999999999999999999985555688999


Q ss_pred             HHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCccccCC-CCCE
Q 022213          171 DAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLFGS-IVPV  244 (301)
Q Consensus       171 ~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~~~-~~~v  244 (301)
                      +.+++.++.   +++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++.  ...++..+.. .+++
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~v  243 (404)
T PTZ00376        164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEF  243 (404)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcE
Confidence            999998852   356677799999999999999999999999999999999999999998541  1223333322 2479


Q ss_pred             EEEecCcccCCCCcceeEEEEee-CCCCcccchhHHHHHHhhh-cccCCCcccccccC
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTN-DPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVCE  300 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~  300 (301)
                      |+++||||.|++||+|+||+++. .+....  +++++.+++.. ....+++.+.|.++
T Consensus       244 i~i~SfSK~~~~~GlRvG~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~q~~~  299 (404)
T PTZ00376        244 LVAQSFSKNMGLYGERIGALHIVCANKEEA--ANVLSQLKLIIRPMYSSPPIHGARIA  299 (404)
T ss_pred             EEEEeCCCcccccccccceEEEEeCCHHHH--HHHHHHHHHHHhhhcCCCchHHHHHH
Confidence            99999999999999999998531 111000  11333444332 23345677777653

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=3.7e-39  Score=294.66  Aligned_cols=265  Identities=23%  Similarity=0.430  Sum_probs=216.6

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .++...+...++++.+.+.      +.+++|+|+.|+|.    +.+++.+.+++.+.+... ...|.+..|.++||++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia   77 (391)
T PRK07309          9 KQLDKIEVSLIRQFDQSIS------DIPGILKLTLGEPD----FTTPDHVKEAAKRAIDAN-QSHYTGMAGLLELRQAAA   77 (391)
T ss_pred             hhhhhcCccHHHHHHHHHH------hcCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHH
Confidence            3444555555555554331      13679999999974    555778888888777643 346988889999999999


Q ss_pred             HHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           95 DYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        95 ~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      +++.+.+++.+.+ ++|++|+|+++++++++++++++||+|++++|+|.++...++..|.+++.++.+ ..++.+|++.+
T Consensus        78 ~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l  156 (391)
T PRK07309         78 DFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFVLTPEML  156 (391)
T ss_pred             HHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC-CcCCcCCHHHH
Confidence            9999878877764 799999999999999999999999999999999999999999999999999874 34567999999


Q ss_pred             Hhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          174 EALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       174 ~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      ++.+++   +++++++++|+||||.+++.+++++|+++|++|++++|+|++|.++.|++....++..+.. .++|+++||
T Consensus       157 ~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~  235 (391)
T PRK07309        157 EKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGL  235 (391)
T ss_pred             HHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecC
Confidence            988864   5788999999999999999999999999999999999999999999986554555544432 589999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ||.|++||+|+||++++.        +++++++.... ...+++.++|.++
T Consensus       236 SK~~g~~GlRvG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~  278 (391)
T PRK07309        236 SKSHAMTGWRIGLIFAPA--------EFTAQLIKSHQYLVTAATTMAQFAA  278 (391)
T ss_pred             hhhccCccceeEEEEeCH--------HHHHHHHHHHhhcccCCChHHHHHH
Confidence            999999999999999853        47777776543 3456788888753

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=4.2e-39  Score=294.05  Aligned_cols=263  Identities=28%  Similarity=0.431  Sum_probs=216.7

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY   96 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~   96 (301)
                      ++..+...++.+.+.+.       ..++|+|+.|.|.    .+.|+.+.+++.+.+... ..+|++..|..+||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~-------~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~   73 (387)
T PRK07777          6 LRPFGTTIFAEMSALAV-------RTGAVNLGQGFPD----EDGPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQ   73 (387)
T ss_pred             hhhcCccHHHHHHHHHh-------hCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHH
Confidence            44556666666665442       3589999999976    334556777777777643 45799889999999999999


Q ss_pred             HhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHH
Q 022213           97 LSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVE  174 (301)
Q Consensus        97 l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~  174 (301)
                      +.+.++...+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|.+++.++++.. .+|.+|+++++
T Consensus        74 ~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  153 (387)
T PRK07777         74 RRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALR  153 (387)
T ss_pred             HHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence            988788777776 7999999999999999999999999999999999999999999999999988665 46789999999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~  253 (301)
                      +.++++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++..+.++..+.. .+++|+++||||.
T Consensus       154 ~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  233 (387)
T PRK07777        154 AAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKT  233 (387)
T ss_pred             HhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhh
Confidence            998888899999999999999999999999999999999999999999999986654455555443 4578999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |++||+|+||++++.        +++++++.... ...+.+.+.|.+
T Consensus       234 ~g~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~  272 (387)
T PRK07777        234 FNVTGWKIGWACGPA--------PLIAAVRAAKQYLTYVGGAPFQPA  272 (387)
T ss_pred             ccCcCceeEEEecCH--------HHHHHHHHHHhhcccCCCCHHHHH
Confidence            999999999999743        47777766544 233566667754

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-39  Score=294.93  Aligned_cols=270  Identities=26%  Similarity=0.427  Sum_probs=218.1

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .++.......++++...... . ...+.++|+|+.|.|.    +++|+.+.+++.+...  ....|++..|..++|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia   76 (397)
T PRK07568          5 KRVLNMPASPIRKLVPYADE-A-KKRGIKVYHLNIGQPD----IKTPEVFFEAIKNYDE--EVLAYSHSQGIPELREAFA   76 (397)
T ss_pred             hHhhhCCcchHHHHHHHHHH-H-HhhCCCEEEecCCCCC----CCCCHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHH
Confidence            33444455667766543321 1 1124679999999964    5567888888876543  3457999899999999999


Q ss_pred             HHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC-CHHHH
Q 022213           95 DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV-DLDAV  173 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~l  173 (301)
                      +++.. ++.++++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.+.++.. +++++
T Consensus        77 ~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l  155 (397)
T PRK07568         77 KYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEI  155 (397)
T ss_pred             HHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHH
Confidence            99984 67778899999999999999999999999999999999999999888899999999998865555543 67999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISK  252 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK  252 (301)
                      +++++++++++++++|+||||.+++.+++++|+++|+++++++|+|++|.++.|++..+.++..+.. .+++|+++||||
T Consensus       156 ~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK  235 (397)
T PRK07568        156 EKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSK  235 (397)
T ss_pred             HHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchh
Confidence            9998888899999999999999999999999999999999999999999999887655555555543 468999999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      .|++||+|+||++++++       ++++++........+++.+.|.++
T Consensus       236 ~~~~~G~R~G~~~~~~~-------~~~~~~~~~~~~~~~~s~~~q~~~  276 (397)
T PRK07568        236 RYSACGARIGCLISKNK-------ELIAAAMKLCQARLSPPTLEQIGA  276 (397)
T ss_pred             hccCCCcceEEEecCCH-------HHHHHHHHHhhccCCCCcHHHHHH
Confidence            99999999999997542       466666555433456788888764

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.7e-39  Score=295.07  Aligned_cols=272  Identities=26%  Similarity=0.433  Sum_probs=228.8

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      .+.+++...++.+..+.+... .+. ..+.++++|+.|+|.    +++++.+.+++.+.+.... ..|++..|...||++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~   76 (393)
T PRK05764          4 LSKRVSRVTPSATLAVTAKAK-ELK-AQGRDVISLGAGEPD----FDTPEHIKEAAIEALDDGK-TKYTPAAGIPELREA   76 (393)
T ss_pred             hhhhhhhcCchHHHHHHHHHH-HHH-hccCCEEEeCCCCCC----CCCCHHHHHHHHHHHhcCC-CCcCCCCChHHHHHH
Confidence            467777888888877765433 232 235789999999975    5667888899888876543 369998899999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           93 IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      +++++.+.++..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|.+++.++++++.++.+|++.
T Consensus        77 ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  156 (393)
T PRK05764         77 IAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQ  156 (393)
T ss_pred             HHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHH
Confidence            99999888787788999999999999999999999999999999999999999999999999999998766678899999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc--CCCCCEEEEecC
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--GSIVPVITLGSI  250 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~vi~~~s~  250 (301)
                      +++.++++++++++++|+||||.+++.+++++|+++|++|++++|+|++|..+.+++..+.++..+  +...++|+++||
T Consensus       157 l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  236 (393)
T PRK05764        157 LEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGF  236 (393)
T ss_pred             HHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecC
Confidence            999988888999999999999999999999999999999999999999999998865544455443  234579999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++++|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       237 SK~~~~~G~RiG~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~  278 (393)
T PRK05764        237 SKAYAMTGWRLGYAAGPK--------ELIKAMSKLQSHSTSNPTSIAQYA  278 (393)
T ss_pred             cccccCccceeEEEecCH--------HHHHHHHHHHhhcccCCChHHHHH
Confidence            999999999999999642        47777776654 344677787765

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1.9e-39  Score=296.10  Aligned_cols=246  Identities=22%  Similarity=0.354  Sum_probs=211.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~a  119 (301)
                      ..++|+|+.|+|.    ++.++.+.+++.+.+... ...|++..|.++||+++++++.+.++...+++ +|++|+|++++
T Consensus        29 ~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~a  103 (386)
T PRK09082         29 EHGAINLSQGFPD----FDGPPYLVEALAYAMAAG-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEA  103 (386)
T ss_pred             hCCEEEecCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHH
Confidence            4578999999964    556778888888877643 35799889999999999999998778777775 89999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++.+++++||+|++++|+|..+...++..|.+++.++++. .++.+|++.+++.++++++++++++|+||||.+++.
T Consensus       104 l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~  182 (386)
T PRK09082        104 LFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSA  182 (386)
T ss_pred             HHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCH
Confidence            9999999999999999999999999999999999999999854 357899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++|++++|+|++|.++.|++....++..+.. ..++|+++||||.|++||+|+||++++.        ++
T Consensus       183 ~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~--------~l  254 (386)
T PRK09082        183 ADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPA--------AL  254 (386)
T ss_pred             HHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCH--------HH
Confidence            99999999999999999999999999987655555555543 4689999999999999999999999743        58


Q ss_pred             HHHHHhhhc-ccCCCcccccccC
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++.+++... ...+++.++|.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~q~~~  277 (386)
T PRK09082        255 SAEFRKVHQYNTFTVNTPAQLAL  277 (386)
T ss_pred             HHHHHHHHhhhcCCCChHHHHHH
Confidence            888877654 3456788888753

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.2e-40  Score=306.99  Aligned_cols=247  Identities=21%  Similarity=0.354  Sum_probs=199.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHhhhCCC--CCCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-----------GKFNCYATNSGIPPARRAIADYLSRDLPY--KLSA  107 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~--~~~~  107 (301)
                      +.++|+|+.+++.    +.. +.+.+.+++....           ..+..|++..|.++||+++|+|+.++++.  .+++
T Consensus        37 p~g~i~L~~~En~----l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~  111 (468)
T PLN02450         37 PSGIIQMGLAENQ----LSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP  111 (468)
T ss_pred             CCeeEEeehhHhH----hhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh
Confidence            4579999999853    222 5555555443210           12345998889999999999999887664  4789


Q ss_pred             CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhccc------C
Q 022213          108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALADK------N  180 (301)
Q Consensus       108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~  180 (301)
                      ++|++|+|+++++..++.+++++||.|++++|+|..|...+. ..|++++.+++..++++.++++.+++.+++      +
T Consensus       112 ~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~  191 (468)
T PLN02450        112 NKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLK  191 (468)
T ss_pred             HHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999988777 589999999987677888999999887753      6


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---------CCCCCEEEEecCc
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---------GSIVPVITLGSIS  251 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---------~~~~~vi~~~s~S  251 (301)
                      ++++++++||||||.+++.+++++|+++|++|+++||+||+|+.+.|++..+.++...         +...++++++|||
T Consensus       192 ~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~S  271 (468)
T PLN02450        192 VKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLS  271 (468)
T ss_pred             eeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEecc
Confidence            7889999999999999999999999999999999999999999998876544443221         1246899999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      |.|++||+|+||+++++.       .+++.+.+... ..++|.++|.++
T Consensus       272 K~~~l~GlRiG~li~~~~-------~l~~~~~~~~~-~~~~s~~~Q~a~  312 (468)
T PLN02450        272 KDLGLPGFRVGAIYSNDE-------MVVSAATKMSS-FGLVSSQTQYLL  312 (468)
T ss_pred             ccCCCCCccEEEEEECCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence            999999999999998642       24555555433 345678888764

>PRK07324 transaminase; Validated

Probab=100.00  E-value=8.9e-40  Score=296.80  Aligned_cols=239  Identities=25%  Similarity=0.364  Sum_probs=205.6

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      ..++++++|+.|+|.    ++.|+.+ +++.+++....+ +|++..|.++||+++++++..     +++++|++|+|+++
T Consensus        23 ~~~~~~~~~~~~e~~----~~~~~~~-~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~t~G~~~   91 (373)
T PRK07324         23 IAESCIDSLTLEELL----ALAGKNP-EAFYQELGQKKL-TYGWIEGSPEFKEAVASLYQN-----VKPENILQTNGATG   91 (373)
T ss_pred             cccCCCCCCcHHHHH----hccCcch-HHHHHHHhcCCc-cCCCCCCCHHHHHHHHHHhcC-----CChhhEEEcCChHH
Confidence            357899999999974    5666667 777777765444 899999999999999999842     67899999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++..++.+++++||+|+++.|+|..+...++..|.+++.+++..+++|.+|++.+++.++++++++++++||||||.+++
T Consensus        92 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~  171 (373)
T PRK07324         92 ANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMD  171 (373)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999977777889999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .+++++|+++|++||+++|+||+|.++.+++. ..++...  .+++|+++||||.|+++|+|+||++++        +++
T Consensus       172 ~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~--~~~~I~~~s~SK~~~~~G~RiG~i~~~--------~~l  240 (373)
T PRK07324        172 RAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL--YEKGISTNSMSKTYSLPGIRVGWIAAN--------EEV  240 (373)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc--cCCEEEEecchhhcCCccceeEEEecC--------HHH
Confidence            99999999999999999999999999888643 3333332  357899999999999999999999983        258


Q ss_pred             HHHHHhhhc-ccCCCccccccc
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++++++... ...+++.++|.+
T Consensus       241 i~~~~~~~~~~~~~~~~~~q~~  262 (373)
T PRK07324        241 IDILRKYRDYTMICAGVFDDML  262 (373)
T ss_pred             HHHHHHHhCcEEecCChHHHHH
Confidence            888888765 345677777764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.2e-39  Score=301.46  Aligned_cols=250  Identities=19%  Similarity=0.348  Sum_probs=197.3

Q ss_pred             CCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHh-------cCCCCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCCCCE
Q 022213           41 PRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVR-------SGKFNCYATNSGIPPARRAIADYLSRDLP--YKLSADDV  110 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~-------~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i  110 (301)
                      +.++|+|+.++...  .+.. ++.+.+.....+-       -.....|++..|.++||++||+|+.+.+|  +.+++++|
T Consensus        45 p~g~i~l~~aEN~l--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~I  122 (496)
T PLN02376         45 PHGIIQMGLAENQL--CLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERV  122 (496)
T ss_pred             CCceEEeecchhhh--hHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhE
Confidence            45799999997421  0122 3334333222110       12344688889999999999999998777  56899999


Q ss_pred             EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhcc------cCccE
Q 022213          111 YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALAD------KNTAA  183 (301)
Q Consensus       111 ~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~  183 (301)
                      ++|+|++++++.+++++++|||.|++++|+|+.+...+. ..|++++.+++..+++++++++.++.++.      .++++
T Consensus       123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~  202 (496)
T PLN02376        123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKG  202 (496)
T ss_pred             EEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeE
Confidence            999999999999999999999999999999999988777 58999999998766778899999976531      36788


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-------C-CCEEEEecCcccCC
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-------I-VPVITLGSISKRWL  255 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-------~-~~vi~~~s~SK~~~  255 (301)
                      +++++||||||.+++.+++++|+++|++++++||+||+|..+.|++..+.++..+..       + .++++++||||.|+
T Consensus       203 l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~g  282 (496)
T PLN02376        203 LILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMG  282 (496)
T ss_pred             EEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCC
Confidence            999999999999999999999999999999999999999999998766666554421       1 35778999999999


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +||+|+||+++++.       .+.+.++.... ...++.+.|.++
T Consensus       283 lpGlRvG~li~~~~-------~l~~~~~~~~~-~~~vs~~~Q~a~  319 (496)
T PLN02376        283 LPGFRVGIVYSFND-------SVVSCARKMSS-FGLVSSQTQLML  319 (496)
T ss_pred             CCcceEEEEEECCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence            99999999998543       35555544433 335777888754

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.8e-39  Score=298.65  Aligned_cols=248  Identities=21%  Similarity=0.366  Sum_probs=202.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHh----------c-CCCCCCCCCCCCHHHHHHHHHHHhhhCC--CCCC
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVR----------S-GKFNCYATNSGIPPARRAIADYLSRDLP--YKLS  106 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~----------~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~  106 (301)
                      ++.++|+|+..+..     .+.+.+.+.+++...          . ..+..|.+..|...||+++|+|+.+.++  ..++
T Consensus        45 np~g~i~l~~aeN~-----l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~  119 (447)
T PLN02607         45 NPSGVIQMGLAENQ-----VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFD  119 (447)
T ss_pred             CCCceEEEechhhh-----hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcC
Confidence            56679999999843     345566666655432          0 1234588888999999999999998766  3588


Q ss_pred             CCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhccc------
Q 022213          107 ADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALADK------  179 (301)
Q Consensus       107 ~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------  179 (301)
                      +++|++|+|++++++.++.++++|||.|++++|+|+++...+. ..|+++++++++.+++|.++++.+++++++      
T Consensus       120 p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~  199 (447)
T PLN02607        120 PDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANI  199 (447)
T ss_pred             HHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999987776 579999999987777788999999988753      


Q ss_pred             CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc----C--C-CCCEEEEecCcc
Q 022213          180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF----G--S-IVPVITLGSISK  252 (301)
Q Consensus       180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----~--~-~~~vi~~~s~SK  252 (301)
                      ++++++++|||||||.+++++++++|+++|++|++++|+||+|+.+.|++..+.++.++    +  . ..++++++||||
T Consensus       200 ~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK  279 (447)
T PLN02607        200 RVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSK  279 (447)
T ss_pred             CeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchh
Confidence            67889999999999999999999999999999999999999999999876666665432    1  1 357999999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      .|+++|+|+||+++.++       +++..++.... ..++|.+.|.++
T Consensus       280 ~fg~~GlRvG~ivs~n~-------~l~~~~~~~~~-~~~~s~~~q~~~  319 (447)
T PLN02607        280 DLGLPGFRVGTIYSYND-------KVVTTARRMSS-FTLVSSQTQHLL  319 (447)
T ss_pred             cCCCCcceEEEEEEcCH-------HHHHHHHHHhh-cCCCCHHHHHHH
Confidence            99999999999998542       46666665543 334567777654

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=2.2e-38  Score=290.05  Aligned_cols=245  Identities=20%  Similarity=0.352  Sum_probs=203.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      .++++++|+.|+|.    ...++.+.+++.+.+.......|+++.|..+||+++++|+.+.+++.++++ +|++|+|+++
T Consensus        27 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~  102 (395)
T PRK08175         27 RGEDIIDFSMGNPD----GPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE  102 (395)
T ss_pred             cCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            46789999999975    344566777777766555566899999999999999999998888888887 8999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---cCccEEEEcCCCCCccc
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---KNTAAMVIINPGNPCGN  195 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~  195 (301)
                      ++..++..++++||+|++++|+|..+...++..|.+++.++++.++.   ..+.+++.++   .+++++++++||||||.
T Consensus       103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~  179 (395)
T PRK08175        103 GLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSNPTAQ  179 (395)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence            99999999999999999999999998888889999999998865433   3677777665   36788999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~  274 (301)
                      +++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. .+++|+++||||.|++||+|+||+++++      
T Consensus       180 ~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~------  253 (395)
T PRK08175        180 CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP------  253 (395)
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCH------
Confidence            999999999999999999999999999999987655555554432 3468999999999999999999999743      


Q ss_pred             chhHHHHHHhhhc-ccCCCccccccc
Q 022213          275 KSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       275 ~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                        ++++++++... ...+++++.|.+
T Consensus       254 --~l~~~~~~~~~~~~~~~~~~~q~~  277 (395)
T PRK08175        254 --ELVSALARIKSYHDYGTFTPLQVA  277 (395)
T ss_pred             --HHHHHHHHHHhhcccCCCcHHHHH
Confidence              47788877654 234566667664

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-38  Score=296.22  Aligned_cols=215  Identities=21%  Similarity=0.328  Sum_probs=176.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhh-hCCCCC-C--CCCEEEcCCHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSR-DLPYKL-S--ADDVYVTLGCKQ  118 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~-~--~~~i~~t~g~~~  118 (301)
                      ++|+|+.|+|+    +++|+.+.+.+ +.+..   .+|+++.|.+++|++|++++.+ .++... .  .++|++|+|+++
T Consensus       101 ~~i~l~~g~p~----~~~~~~v~e~~-~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~  172 (527)
T PRK09275        101 DAVSYVRDQLG----FDADEFVYELV-DGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA  172 (527)
T ss_pred             HHHhhcCCCCC----CCCCHHHHHHH-HHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            47999999964    77888888855 44443   2699999999999999995544 333222 2  348999999999


Q ss_pred             HHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHhcC--ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCC
Q 022213          119 AVEVILSV-----LARPGANVLLPRPGWPYYEGIAQRKQ--VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGN  191 (301)
Q Consensus       119 al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n  191 (301)
                      ++..++.+     +++|||+|++++|+|..|...++..|  .+++.++..++++|.++.++++++++++++++++++|||
T Consensus       173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~N  252 (527)
T PRK09275        173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSN  252 (527)
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcC
Confidence            99999987     68999999999999999998887775  555666655667799999999999888999999999999


Q ss_pred             CcccCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          192 PCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |||.+++.+++++|+++|++  ++++||+||+|..+.+.   +.++.... ..++|+++||||.|+++|||+||+++++.
T Consensus       253 PTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~-~~~~I~v~SfSK~f~mtG~RlG~i~~~~~  328 (527)
T PRK09275        253 PPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVL-PYNTILVYSFSKYFGATGWRLGVIALHED  328 (527)
T ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhC-CCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence            99999999999999999964  59999999999998752   23332221 25899999999999999999999998654

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=6.4e-39  Score=290.17  Aligned_cols=234  Identities=21%  Similarity=0.320  Sum_probs=197.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|++    .+++|+.+.+++.+.+..  ...|+ ..|..+||+++++++      ++++++|++|+|+++++
T Consensus        28 ~~~~i~l~~nen----~~~~~~~v~~a~~~~~~~--~~~Yp-~~g~~~Lr~aia~~~------~~~~~~I~vt~Gs~e~i   94 (366)
T PRK01533         28 DHSFVKLASNEN----PFGCSPRVLDELQKSWLD--HALYP-DGGATTLRQTIANKL------HVKMEQVLCGSGLDEVI   94 (366)
T ss_pred             CCceEEeCCCCC----CCCCCHHHHHHHHHHHHh--cCcCC-CCCHHHHHHHHHHHh------CCCcceEEECCCHHHHH
Confidence            568999999986    378888999998877653  23465 468999999999998      57899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++++++++||+|++++|+|..|...++..|.+++.++++   ++.+|++.+++.++++++++++++||||||.+++.+
T Consensus        95 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~  171 (366)
T PRK01533         95 QIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDR  171 (366)
T ss_pred             HHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHH
Confidence            99999999999999999999999999999999999999873   346999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|+++|++++ ++|+||+|.++.+.+.....+..++..+++|+++||||.|++||+|+||++++.        ++++
T Consensus       172 ~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~--------~~~~  242 (366)
T PRK01533        172 KLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE--------ELIE  242 (366)
T ss_pred             HHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH--------HHHH
Confidence            9999999998876 577799999887654322333344455689999999999999999999998742        5888


Q ss_pred             HHHhhhcccCCCcccccccC
Q 022213          281 SIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +++.... ..+++.++|.++
T Consensus       243 ~l~~~~~-~~~~~~~~q~aa  261 (366)
T PRK01533        243 KLNVVRL-PFNVSSLAQKAA  261 (366)
T ss_pred             HHHHhcC-CCCcCHHHHHHH
Confidence            8877654 457888888764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=6.3e-38  Score=287.54  Aligned_cols=216  Identities=23%  Similarity=0.327  Sum_probs=179.9

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      .+.++|+|+.|+|.    +++++.+.+++.+.+++.    ....|++..|.++||+++|+++.+.   .+++++|++|+|
T Consensus        31 ~~~~~i~l~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~G  103 (402)
T TIGR03542        31 PSADIIRLGIGDTT----QPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDG  103 (402)
T ss_pred             CCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCC
Confidence            46789999999964    567788888888877642    2356988889999999999986431   378899999999


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCc-----------eEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          116 CKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQV-----------EVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +++++..+. .++.+||+|++++|+|..|...++..|+           ++++++++.+.++..+++.     ..+++++
T Consensus       104 a~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i  177 (402)
T TIGR03542       104 AKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDII  177 (402)
T ss_pred             cHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEE
Confidence            999999864 5668999999999999999999999999           8888887655565555422     1468899


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      ++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++..+.++..++. ..++|+++||||.|++||+|+||
T Consensus       178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~  257 (402)
T TIGR03542       178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW  257 (402)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence            99999999999999999999999999999999999999999886544445555544 35789999999999999999999


Q ss_pred             EEeeC
Q 022213          264 LVTND  268 (301)
Q Consensus       264 ~~~~~  268 (301)
                      ++++.
T Consensus       258 ~i~~~  262 (402)
T TIGR03542       258 TVVPK  262 (402)
T ss_pred             EEecH
Confidence            99854

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.3e-38  Score=284.50  Aligned_cols=237  Identities=19%  Similarity=0.340  Sum_probs=196.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHHHHHHHhhhC--CCCCCCCCEEEcCCHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATNSGIPPARRAIADYLSRDL--PYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~--~~~~~~~~i~~t~g~~~a  119 (301)
                      .+++|+.|+|    .+++|+.+.+++.+.+.... ...|++ .|..+||+++++|+.+.+  ++.+++++|++|+|++++
T Consensus        29 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a  103 (374)
T PRK02610         29 QLDRLDTNEF----PYDLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL  103 (374)
T ss_pred             ceeEecCCCC----CCCCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence            5899999996    37888899999988776532 346865 699999999999998765  466899999999999999


Q ss_pred             HHHHHHHhcCCCC-EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCCCcc
Q 022213          120 VEVILSVLARPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGNPCG  194 (301)
Q Consensus       120 l~~~~~~l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG  194 (301)
                      +..++.+++.+|| .|++++|+|..|...++..|++++.++++. +++++|++++++.++    .+++++++++||||||
T Consensus       104 l~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG  182 (374)
T PRK02610        104 IRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG  182 (374)
T ss_pred             HHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence            9998888888886 899999999999999999999999998743 357899999998876    4789999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~  274 (301)
                      .+++.+++++|+++|  ++++||+||+|.++.+..    .+..+....++|+++||||.|++||+|+||++++.      
T Consensus       183 ~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~----~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~------  250 (374)
T PRK02610        183 NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT----LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP------  250 (374)
T ss_pred             CCCCHHHHHHHHhcc--CCcEEEEeccccccCccc----hHHHHhcCCCEEEEEecchhccCcccceeeeecCH------
Confidence            999999999999876  389999999999976421    12233334578999999999999999999999743      


Q ss_pred             chhHHHHHHhhhcccCCCcccccccC
Q 022213          275 KSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                        ++++++..... ..+.+.++|.++
T Consensus       251 --~l~~~l~~~~~-~~~~~~~~q~a~  273 (374)
T PRK02610        251 --ELIAVLEKVRL-PYNLPSFSQLAA  273 (374)
T ss_pred             --HHHHHHHHhcC-CCCCCHHHHHHH
Confidence              47777776653 345677888753

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.8e-37  Score=280.00  Aligned_cols=221  Identities=25%  Similarity=0.401  Sum_probs=194.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      ..++++|+.|+|.    +++++.+.+++.+.++..  ...+|++..|..++|+++++++.+.++..+++++|++|+|+++
T Consensus        32 ~~~~~~l~~g~p~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~  107 (394)
T PRK06836         32 ADNVFDFSLGNPS----VPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAG  107 (394)
T ss_pred             CCCeEEecCcCCC----CCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHH
Confidence            4678999999864    566788889888777642  2568988899999999999999988888889999999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++..++++++++||.|++++|+|..+...++..|++++.++++.+ ++.+|++++++.++++++++++++|+||||.+++
T Consensus       108 al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~  186 (394)
T PRK06836        108 ALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYS  186 (394)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCC
Confidence            999999999999999999999999999999999999999998653 4679999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHh------CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          199 YHHLQEIAEMARK------LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       199 ~~~l~~i~~~~~~------~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .+++++|+++|++      |++++|+|++|.++.+++....++..  ..+++++++||||.|++||+|+||+++++
T Consensus       187 ~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~pGlRiG~~~~~~  260 (394)
T PRK06836        187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK--YYDNSIVVYSFSKSLSLPGERIGYIAVNP  260 (394)
T ss_pred             HHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH--ccCcEEEEecchhhccCcceeeEEEecCH
Confidence            9999999999999      89999999999999886544333322  23579999999999999999999999864

>PLN02397 aspartate transaminase

Probab=100.00  E-value=3e-37  Score=284.24  Aligned_cols=276  Identities=15%  Similarity=0.170  Sum_probs=192.8

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      ++..+.++|..+.+...+    ...+.+|+|+.|+ |+..+....-+.+.++....+..+...+|++..|.++||+++++
T Consensus        27 ~~~~~~~~i~~~~~~~~~----~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~  102 (423)
T PLN02397         27 VEPAPPDPILGVTEAFLA----DPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAK  102 (423)
T ss_pred             CCcCCCChHHHHHHHHhh----CCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHH
Confidence            456667777777664422    2356789999996 44211101123455555444444445579999999999999999


Q ss_pred             HHhhhCCCCCCCCCE-----EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           96 YLSRDLPYKLSADDV-----YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i-----~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      |+.+......++++|     +.++|+. ++...+..++.|||+|++++|+|+.|...++..|.+++.+++...+++++|+
T Consensus       103 ~~~~~~~~~~~~~~i~~~~i~~g~Ga~-~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~  181 (423)
T PLN02397        103 LAYGADSPAIKENRVATVQCLSGTGSL-RLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF  181 (423)
T ss_pred             HHcCCCCchhhcCeeEeeecccchHHH-HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH
Confidence            996643323333343     3344443 3444555555799999999999999999999999999999874444578999


Q ss_pred             HHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCC-CCCE
Q 022213          171 DAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGS-IVPV  244 (301)
Q Consensus       171 ~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~-~~~v  244 (301)
                      +.+++.+.   .+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++  ....++..+.. ..++
T Consensus       182 ~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~v  261 (423)
T PLN02397        182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEI  261 (423)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcE
Confidence            98887664   356778889999999999999999999999999999999999999999864  12233333322 2469


Q ss_pred             EEEecCcccCCCCcceeEEEE--eeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          245 ITLGSISKRWLVPGWRFGWLV--TNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      |+++||||+|+++|+|+||++  +++.. ..  ..+.+.++...+ ...+++.+.|.++
T Consensus       262 I~~~SfSK~~~~~G~RvG~~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~q~~~  317 (423)
T PLN02397        262 LVAQSYAKNMGLYGERVGALSVVCKSAD-VA--VRVKSQLKLIARPMYSNPPIHGASIV  317 (423)
T ss_pred             EEEEECcccCCCccccceEEEEEeCCHH-HH--HHHHHHHHHHHhcccCCCcHHHHHHH
Confidence            999999999999999999996  32211 00  112334444432 3446777777653

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=4.5e-37  Score=278.47  Aligned_cols=234  Identities=25%  Similarity=0.392  Sum_probs=190.2

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC-CCCCCEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK-LSADDVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~~i~~t~g~~~  118 (301)
                      .+.++|+|+.|+|.    .+.++.+.+++.+...   ..+|+++.|.++||+++++|+.+.+++. +++++|++|+|+++
T Consensus        25 ~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~   97 (364)
T PRK07865         25 HPDGIVDLSVGTPV----DPVPPVIQEALAAAAD---APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKE   97 (364)
T ss_pred             cCCCEEEcCCCCCC----CCCCHHHHHHHHHHHh---hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHH
Confidence            45679999999964    4556778888776543   2379998999999999999999988886 89999999999999


Q ss_pred             HHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213          119 AVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       119 al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  197 (301)
                      ++..++..+ +++||.|++++|+|..+...++..|.++..++.         ++.++   ..+++++++++||||||.++
T Consensus        98 ~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~---~~~~~~v~~~~p~NPtG~~~  165 (364)
T PRK07865         98 LVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELG---PQRPALIWLNSPSNPTGRVL  165 (364)
T ss_pred             HHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCC---cccceEEEEcCCCCCCCccC
Confidence            999988888 799999999999999999999999999887641         22222   24678999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~  274 (301)
                      +.+++++|+++|+++|++||+||+|.++.+++.....+...   ....++|+++||||.|++||+|+||+++++      
T Consensus       166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~------  239 (364)
T PRK07865        166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP------  239 (364)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH------
Confidence            99999999999999999999999999988865322222111   123579999999999999999999998743      


Q ss_pred             chhHHHHHHhhhc-ccCCCcccccccC
Q 022213          275 KSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       275 ~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                        +++++++.... ...+++.+.|.++
T Consensus       240 --~~~~~~~~~~~~~~~~~~~~~q~~~  264 (364)
T PRK07865        240 --ALVAELLEVRKHAGMMVPAPVQAAM  264 (364)
T ss_pred             --HHHHHHHHHHHhcCCCcCHHHHHHH
Confidence              47777776543 3456788888653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.4e-37  Score=280.59  Aligned_cols=235  Identities=18%  Similarity=0.323  Sum_probs=194.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+++++|+.|.|.    +++|+.+.+++.+.+.  ....|++. +..+||+++++|+      ++++++|++|+|+++++
T Consensus        18 ~~~~~~l~~~~~~----~~~p~~~~~a~~~~~~--~~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l   84 (354)
T PRK06358         18 KNMILDFSANINP----LGVPESLKQAITENLD--KLVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELI   84 (354)
T ss_pred             ccceEEecCCCCC----CCCCHHHHHHHHHHHH--hhhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHH
Confidence            3558999999753    4567888898888764  35578764 6889999999998      57899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..+++++ .+ +.|++++|+|..|...++..|.+++.++++.+++|.+| +++.+.+..+++++++++||||||.+++.+
T Consensus        85 ~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~  161 (354)
T PRK06358         85 FNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKE  161 (354)
T ss_pred             HHHHHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHH
Confidence            9999987 44 68999999999999999999999999998766678899 666666666789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|+++|+++++++|+||+|.++.+++.....+..++..+++|+++||||.|++||+|+||++++++       .++.
T Consensus       162 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~-------~~~~  234 (354)
T PRK06358        162 EMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK-------NLAE  234 (354)
T ss_pred             HHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH-------HHHH
Confidence            999999999999999999999999998764333344445557899999999999999999999998543       3677


Q ss_pred             HHHhhhcccCCCccccccc
Q 022213          281 SIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++... ..+.+.+.|.+
T Consensus       235 ~~~~~~~-~~~~~~~~q~~  252 (354)
T PRK06358        235 KLLQMRE-PWSINTFADLA  252 (354)
T ss_pred             HHHHhCC-CCcchHHHHHH
Confidence            7776654 34566666654

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-37  Score=279.85  Aligned_cols=233  Identities=23%  Similarity=0.375  Sum_probs=192.8

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++|+|+.|++.    +++++.+.+++.+.+..  ...|++ .|..+||+++++++      ++++++|++|+|++++
T Consensus        28 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~-~~~~~lr~~ia~~~------~~~~~~I~it~G~~~a   94 (357)
T PRK14809         28 DPDDLVKLSSNENP----HGPSPAAVEAIREAAER--VHSYPK-ASHADLTAALADRW------DVSPEQVWLANGGDGA   94 (357)
T ss_pred             CccceeEecCCCCC----CCCCHHHHHHHHHHHhh--hhcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHH
Confidence            35689999999863    56677888888877652  457875 68899999999998      5789999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++++++++||.|++++|+|..|.......|.+++.+++..++++.++.+.+.+.. ++++++++++||||||.+++.
T Consensus        95 l~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~  173 (357)
T PRK14809         95 LDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPL  173 (357)
T ss_pred             HHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCH
Confidence            9999999999999999999999988888888999999999866667888888887765 357899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|++ +++||+||+|.++.+.+.   .+......+++|+++||||.|++||+|+||+++++        +++
T Consensus       174 ~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--------~~~  241 (357)
T PRK14809        174 DEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--------EWA  241 (357)
T ss_pred             HHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--------HHH
Confidence            999999999875 789999999999886431   22233345689999999999999999999999854        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++... ..+.+.+.|.+
T Consensus       242 ~~~~~~~~-~~~~~~~~~~~  260 (357)
T PRK14809        242 DAYARVNT-PFAASELACRA  260 (357)
T ss_pred             HHHHHhCC-CCCCCHHHHHH
Confidence            77776643 34566676654

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=2.9e-37  Score=285.57  Aligned_cols=236  Identities=16%  Similarity=0.213  Sum_probs=192.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +..+++|+.|+|.    .+.++.+.+++.+...  ....|++..|..+||+++++++.+..+   .+++|++|+|+++++
T Consensus        84 ~~~~i~L~~g~p~----~~~~p~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al  154 (431)
T PRK15481         84 GTPLHDLAGGNPD----PQRLPDLSRYFARLSR--TPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAI  154 (431)
T ss_pred             cchhhhhhcCCCC----hhHhHHHHHHHHHhhh--hhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHH
Confidence            3468999999864    4444567777766543  234799999999999999999976322   346999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc-CCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~  199 (301)
                      ..+++++++|||.|++++|+|..|...++..|++++.++++. +  ++|++.++++++.++++++++ +||||||.+++.
T Consensus       155 ~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~--g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~  231 (431)
T PRK15481        155 ERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-E--GMQPEKLERALAQGARAVILTPRAHNPTGCSLSA  231 (431)
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC-C--CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCH
Confidence            999999999999999999999999999999999999999843 2  389999999887788888886 999999999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKL-RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|+++ +++||+||+|.++.+.+. ...+. . ...++|+++||||.|+ ||+|+||++++.        ++
T Consensus       232 ~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~--------~~  299 (431)
T PRK15481        232 RRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIRSVSKALG-PDLRLAFVASDS--------AT  299 (431)
T ss_pred             HHHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEeeeccccC-CCceeEEEeCCH--------HH
Confidence            9999999999999 999999999999986532 22222 1 2358999999999999 999999999743        47


Q ss_pred             HHHHHhhhc-ccCCCcccccccC
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +++++.... ...+++.+.|.++
T Consensus       300 ~~~~~~~~~~~~~~~s~~~q~a~  322 (431)
T PRK15481        300 SARLRLRLNSGTQWVSHLLQDLV  322 (431)
T ss_pred             HHHHHHHHhccccCCCHHHHHHH
Confidence            777766543 2346788888764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=6.3e-38  Score=283.90  Aligned_cols=248  Identities=31%  Similarity=0.521  Sum_probs=206.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHH-HHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVD-AVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAV  120 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al  120 (301)
                      .+|+|+.|++......++++...+++.+ .........|++..|.++||+++++|+.+..+...+++ +|++++|+++++
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~   81 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL   81 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence            6899999997632222345556666554 33445567899999999999999999997778788899 999999999999


Q ss_pred             HHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCc
Q 022213          121 EVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPC  193 (301)
Q Consensus       121 ~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~npt  193 (301)
                      ..++..+ .++||+|++++|+|..+...++..|++++.+++..++++.+|++.|++.+++      +++++++++|+|||
T Consensus        82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt  161 (363)
T PF00155_consen   82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT  161 (363)
T ss_dssp             HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred             hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence            9999999 7899999999999999999999999999999987778889999999998876      56789999999999


Q ss_pred             ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213          194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI  272 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~  272 (301)
                      |.+++.+++++|+++|++||+++|+||+|.++.++...+.+ ...++...++|+++|+||.|+++|+|+||++++.    
T Consensus       162 G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~----  237 (363)
T PF00155_consen  162 GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP----  237 (363)
T ss_dssp             TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH----
T ss_pred             ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchh----
Confidence            99999999999999999999999999999999998654433 3444555569999999999999999999999843    


Q ss_pred             ccchhHHHHHHhhhcccCCCccccccc
Q 022213          273 FQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                          +++++++........ +.+.|.+
T Consensus       238 ----~~~~~l~~~~~~~~~-~~~~~~~  259 (363)
T PF00155_consen  238 ----ELIERLRRFQRSGLS-SSPMQAA  259 (363)
T ss_dssp             ----HHHHHHHHHHHHTTS-SHHHHHH
T ss_pred             ----hhhhhhhhccccccc-cchhhHH
Confidence                588888887654333 6666654

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=2.6e-36  Score=272.79  Aligned_cols=251  Identities=24%  Similarity=0.348  Sum_probs=199.0

Q ss_pred             CcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhh
Q 022213           21 PAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD  100 (301)
Q Consensus        21 ~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~  100 (301)
                      +..+++.+++...+.  +..++++|+|+.|+|.    +++++.+.+++.+...   ...|+++.|.++||+++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~   72 (357)
T TIGR03539         2 PDFPWDSLAPYKAKA--ASHPDGIVDLSVGTPV----DPVPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERR   72 (357)
T ss_pred             CcchHHHHHHHHHHh--hhCCCCeEEccCCCCC----CCCCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHh
Confidence            345666777655443  2356789999999974    5567778888776543   347999899999999999999998


Q ss_pred             CCCC-CCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc
Q 022213          101 LPYK-LSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD  178 (301)
Q Consensus       101 ~~~~-~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  178 (301)
                      +++. +++++|++|+|+++++..++..+ +++||.|++++|+|..+...++..|.+++.++         +++.+.   .
T Consensus        73 ~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~  140 (357)
T TIGR03539        73 RGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---P  140 (357)
T ss_pred             cCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---c
Confidence            8886 99999999999999999999888 69999999999999999888888999887663         222222   2


Q ss_pred             cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc--c-CCCCCEEEEecCcccCC
Q 022213          179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL--F-GSIVPVITLGSISKRWL  255 (301)
Q Consensus       179 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~--~-~~~~~vi~~~s~SK~~~  255 (301)
                      .+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.|++.....+..  . ....++|+++||||.|+
T Consensus       141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  220 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN  220 (357)
T ss_pred             cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC
Confidence            46889999999999999999999999999999999999999999998886532222211  0 11247999999999999


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++|+|+||++++.        +++.+++.... ...+++.+.|.++
T Consensus       221 ~~G~R~G~~i~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~  258 (357)
T TIGR03539       221 LAGYRAGFVAGDP--------ALVAELLTVRKHAGLMVPAPVQAAM  258 (357)
T ss_pred             CCceeEEEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHH
Confidence            9999999998643        47777766543 3456778888653

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=8.6e-37  Score=283.23  Aligned_cols=214  Identities=20%  Similarity=0.324  Sum_probs=172.1

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH-HHHhhhCCCC-CCCC--CEEEcCCHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA-DYLSRDLPYK-LSAD--DVYVTLGCKQ  118 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~-~~~~--~i~~t~g~~~  118 (301)
                      ++|+|+.|+|+    +++++.+ .++.+.+.+.   +|+++.|..+++++++ +|+.+.++.. ..++  +|++|+|+++
T Consensus        95 ~~i~l~~g~p~----~~~~~~~-~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~  166 (521)
T TIGR03801        95 DIISYVIDQLG----FDPDAFL-YEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA  166 (521)
T ss_pred             HHHhhcCCCCC----CCCCHHH-HHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            47999999975    6655555 4444444322   5987778888887777 5666654433 3333  8999999999


Q ss_pred             HHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHhc--CceEEEeecCCCCC-----CCCCHHHHHhhcccCccEEEE
Q 022213          119 AVEVILSV-----LARPGANVLLPRPGWPYYEGIAQRK--QVEVRHFDLLPERN-----WEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       119 al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~--g~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      |+..++.+     +++|||+|++++|+|..|...++..  |.+++.++....++     |.+|.++++++++++++++++
T Consensus       167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l  246 (521)
T TIGR03801       167 AMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFV  246 (521)
T ss_pred             HHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEE
Confidence            99999887     6899999999999999998887765  67777777754433     899999999988888999999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++||||||.+++.+++++|+++|++|  +++||+||+|..+.+.   +.++.... ..++|+++||||.|+++|||+||+
T Consensus       247 ~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~-~~~vI~v~SfSK~fg~~G~RlG~i  322 (521)
T TIGR03801       247 VNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAEL-PYNTIGVYSFSKYFGATGWRLGTI  322 (521)
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhC-CCCEEEEEcchhhccCchhhhhhh
Confidence            99999999999999999999999986  8999999999998752   33333322 247999999999999999999999


Q ss_pred             EeeC
Q 022213          265 VTND  268 (301)
Q Consensus       265 ~~~~  268 (301)
                      ++++
T Consensus       323 ~~~~  326 (521)
T TIGR03801       323 ALHK  326 (521)
T ss_pred             hcCc
Confidence            9865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.6e-37  Score=279.55  Aligned_cols=237  Identities=19%  Similarity=0.312  Sum_probs=197.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..|+|+.|+|    .+++|+.+.+++.+.+..  .....|++ .|..+||+++++|+.+.++.++++++|++|+|+++++
T Consensus        27 ~~i~l~~~~~----~~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l  101 (368)
T PRK03317         27 VPVRLNTNEN----PYPPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL  101 (368)
T ss_pred             ceeEecCCCC----CCCCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence            5699999986    378889999999887753  23557866 5889999999999999888889999999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++++++++||.|+++.|+|..|...++..|.+++.++.  .+++++|++.+++++++ +++++++++||||||.+++.
T Consensus       102 ~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~  179 (368)
T PRK03317        102 QQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPL  179 (368)
T ss_pred             HHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence            9999999999999999999999999999999998887765  34678999999998864 67889999999999999998


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|++.|   ++++|+||+|.++.+.+. .......+...++|+++||||.|+++|+|+||++++.        +++
T Consensus       180 ~~l~~l~~~~---~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--------~~~  247 (368)
T PRK03317        180 DDVEAILDAA---PGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--------AVV  247 (368)
T ss_pred             HHHHHHHHHC---CceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--------HHH
Confidence            8888888866   689999999999876542 2222223334579999999999999999999999743        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++.... ..+.++++|.+
T Consensus       248 ~~l~~~~~-~~~~s~~~~~a  266 (368)
T PRK03317        248 DALRLVRL-PYHLSAVTQAA  266 (368)
T ss_pred             HHHHhcCC-CCCCCHHHHHH
Confidence            88876553 34677788765

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=1.5e-36  Score=297.88  Aligned_cols=261  Identities=14%  Similarity=0.242  Sum_probs=210.7

Q ss_pred             ccccchhhhcCCcccHHHHHHHHHhhcc----cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 022213           10 GFEDKQEHKAAPAVTVKTSLASIIDSVN----KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSG   85 (301)
Q Consensus        10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g   85 (301)
                      +++.+++++....+++...+.+.....+    ...++++|+|+.|+|    .+++|+.+.+++.+.+...   .|  ..|
T Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~vI~LsinE~----d~ppPp~V~eAi~eal~~~---~~--s~g  731 (1082)
T PLN02672        661 QERLPEEEESSKFIGFSSSARSALKEAELSVSGSQESSLIHMDVDES----FLPVPSAVKASIFESFVRQ---NI--SES  731 (1082)
T ss_pred             ccccchhhhhHhhhCCCchhHHHHHhcccCCcccCCCCEEEEeCCCC----CCCCCHHHHHHHHHHHhhc---CC--CCC
Confidence            4455666666666666554444443322    234678999999996    4788999999998877532   22  345


Q ss_pred             CHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER  164 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~  164 (301)
                      .+++|+++++++.+++|+..++ ++|++|+|+++++..++++++++||.|+++.|+|+.|...++..|.+++.+++..++
T Consensus       732 ~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~  811 (1082)
T PLN02672        732 ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSD  811 (1082)
T ss_pred             ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEeccccc
Confidence            6789999999999988887765 589999999999999999999999999999999999999999999999999997667


Q ss_pred             CCCCCHHHHHhhccc-CccEEEEcCCC-CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCcc----
Q 022213          165 NWEVDLDAVEALADK-NTAAMVIINPG-NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMG----  236 (301)
Q Consensus       165 ~~~~~~~~l~~~~~~-~~~~v~l~~p~-nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~----  236 (301)
                      +|.+|.+.++++++. +.+.+++++|| ||||.+++.+++++|+++|++|+++||+||+|.++.|++...  .++.    
T Consensus       812 gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~  891 (1082)
T PLN02672        812 GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILS  891 (1082)
T ss_pred             CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHH
Confidence            899999999999866 45688999997 999999999999999999999999999999999999865321  1111    


Q ss_pred             ccCC---CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          237 LFGS---IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       237 ~~~~---~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      .++.   ..+||+++||||.|++||+|+||++++++       +++++++...
T Consensus       892 ~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~-------eLi~~l~~~~  937 (1082)
T PLN02672        892 RLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS-------VLIDAFHSAP  937 (1082)
T ss_pred             HhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH-------HHHHHHHHhh
Confidence            1221   23799999999999999999999998653       3777777653

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.2e-37  Score=277.64  Aligned_cols=234  Identities=21%  Similarity=0.308  Sum_probs=196.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|+|.    +++++.+.+++.+.++.  . .|.+..|..++|+++++++      ++++++|++|+|+++++
T Consensus        28 ~~~~i~l~~n~~~----~~~~~~v~~a~~~~~~~--~-~~~p~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~~l   94 (359)
T PRK03158         28 LEKIVKLASNENP----YGPSPKVKEAIAAHLDE--L-ALYPDGYAPELRTKVAKHL------GVDEEQLLFGAGLDEVI   94 (359)
T ss_pred             CCceEEecCCCCC----CCCCHHHHHHHHHHHHH--h-hcCCCCcHHHHHHHHHHHh------CCCHHHEEECCCHHHHH
Confidence            3478999999863    55677888988877653  2 4555579999999999998      46789999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++++++++||.|++++|+|..+...+...|.++..+++.   ++.+|++.+++.++++++++++++||||||.+++.+
T Consensus        95 ~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~  171 (359)
T PRK03158         95 QMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHE  171 (359)
T ss_pred             HHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence            99999999999999999999999998899999999999885   356899999998888889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++.++++.|+ +++++|+||+|.++.+++.....+...+..+++|+++||||.|+++|+|+||++++.        ++++
T Consensus       172 ~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~  242 (359)
T PRK03158        172 ELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE--------ELIE  242 (359)
T ss_pred             HHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--------HHHH
Confidence            9999998874 699999999999988765433333444445689999999999999999999999743        4778


Q ss_pred             HHHhhhcccCCCcccccccC
Q 022213          281 SIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +++..... .+++.++|.++
T Consensus       243 ~~~~~~~~-~~~~~~~q~~~  261 (359)
T PRK03158        243 KLNIARPP-FNTTRIAQYAA  261 (359)
T ss_pred             HHHHhcCC-CCCCHHHHHHH
Confidence            88776543 46788888764

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6e-37  Score=278.29  Aligned_cols=235  Identities=23%  Similarity=0.366  Sum_probs=193.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|.|.    +.+++.+.+++.+...  ...+|++..| .+||+++++++      ++++++|++|+|+++++
T Consensus        35 ~~~~i~l~~~~~~----~~~~~~~~~al~~~~~--~~~~Y~~~~g-~~lr~~ia~~~------~~~~~~i~~t~G~~~~l  101 (371)
T PRK05166         35 VPRIAKLGSNENP----LGPSPAVRRAFADIAE--LLRLYPDPQG-RALREAIAART------GVPADRIILGNGSEDLI  101 (371)
T ss_pred             CcceEEcCCCCCC----CCCCHHHHHHHHHHHH--HhhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHH
Confidence            5689999999863    4567788888876543  3457998888 59999999998      46788999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++.+++++||.|+++.|+|..+...++..|++++.++++.  ++++|++++++.++++++++++++||||||.+++.+
T Consensus       102 ~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  179 (371)
T PRK05166        102 AVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTAD  179 (371)
T ss_pred             HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999999999999999999998753  456999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|+++|++ ++++|+||+|.++.+++..+..+..+. ...++|+++||||.|++||+|+||++++++       +++
T Consensus       180 ~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~-------~l~  251 (371)
T PRK05166        180 QLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP-------ELV  251 (371)
T ss_pred             HHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH-------HHH
Confidence            99999999865 889999999999986543333232232 235799999999999999999999887543       477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +.++.... ..+++.++|.+
T Consensus       252 ~~~~~~~~-~~~~~~~~q~~  270 (371)
T PRK05166        252 GLLDRVRT-PFNVNGAAQAA  270 (371)
T ss_pred             HHHHHhcc-CCCCCHHHHHH
Confidence            77766543 34577788754

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-36  Score=258.60  Aligned_cols=223  Identities=24%  Similarity=0.410  Sum_probs=201.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..+++.|.+.+-    +|+.|+.+.+++++.++.+.+ .|+  .+..++-+++++|.+++++..+.++-|++++|...++
T Consensus        24 ~~DvlPmWVADM----Df~~pp~i~~Al~~rvdhGvf-GY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi   96 (388)
T COG1168          24 NEDVLPMWVADM----DFPTPPEIIEALRERVDHGVF-GYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI   96 (388)
T ss_pred             CCCcceeeeecc----cCCCCHHHHHHHHHHHhcCCC-CCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhH
Confidence            368999999984    689999999999999986643 455  5678899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~  198 (301)
                      ..+++.+.++||.|++.+|.|+++....+..|.++...|+.. ++.|.+|++.|++++.+ +++++++||||||||.+.+
T Consensus        97 ~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt  176 (388)
T COG1168          97 SLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT  176 (388)
T ss_pred             HHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence            999999999999999999999999999999999999999864 45578899999998866 4689999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC--CCEEEEecCcccCCCCcceeEEEEeeCCC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPGWRFGWLVTNDPN  270 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~~G~rvG~~~~~~~~  270 (301)
                      .+++++|.++|.+||++||+||+++++++.+....++..++..  ++.|.+.|.||+|+++|+++++++.+++.
T Consensus       177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~  250 (388)
T COG1168         177 KEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRE  250 (388)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHH
Confidence            9999999999999999999999999999998766676666554  67999999999999999999999998753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=6e-36  Score=275.76  Aligned_cols=244  Identities=21%  Similarity=0.307  Sum_probs=186.7

Q ss_pred             CCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      .+++|+|+.|+|..   .+. ...+.+++.+.+...    ....|++..|..+||++|++|+.+.+|+.+++++|++|+|
T Consensus        29 ~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~G  105 (416)
T PRK09440         29 TPGAIMLGGGNPAH---IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNG  105 (416)
T ss_pred             CCCceeccCCCCCc---cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccC
Confidence            36789999999863   233 345667776666542    2457999999999999999999988898899999999999


Q ss_pred             HHHHHHHHHHHhcC-----CCCEEEE-cCCCCcchHHHHHhcC----ceEEEeecCCCC-CCCCCHHHHHhhcccCccEE
Q 022213          116 CKQAVEVILSVLAR-----PGANVLL-PRPGWPYYEGIAQRKQ----VEVRHFDLLPER-NWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       116 ~~~al~~~~~~l~~-----~gd~Vl~-~~p~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +++++..+++++++     +||.|++ ++|+|+.|...+...+    .....+++..+. ++.+|++.++  +.++++++
T Consensus       106 a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i  183 (416)
T PRK09440        106 SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAI  183 (416)
T ss_pred             hHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEE
Confidence            99999999999985     6899999 7999999977554333    222222332211 3678999987  35577899


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++++||||||.+++.+++++|+++|++++++||+||+|..+.... .+..... ...+++|+++||||. ++||+|+||+
T Consensus       184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~  260 (416)
T PRK09440        184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIV  260 (416)
T ss_pred             EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEeccccc-CCCcceEEEE
Confidence            999999999999999999999999999999999999997532110 1111111 114689999999996 9999999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          265 VTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +++.        ++++++..... ...+++.+.|.++
T Consensus       261 i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~  289 (416)
T PRK09440        261 IADE--------EIIEALSNMNGIISLAPGRLGPAIA  289 (416)
T ss_pred             eCCH--------HHHHHHHHHHHHhccCCCcHHHHHH
Confidence            9743        47777777654 3446788888764

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.3e-36  Score=273.05  Aligned_cols=234  Identities=21%  Similarity=0.357  Sum_probs=189.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ++.++|+|+.|+|    .+++|+.+.+++.+.+..  ...|++ .+..+||+++|+++      ++++++|++|+|++++
T Consensus        18 ~~~~~i~l~~~~~----~~~~p~~~~~a~~~~~~~--~~~y~~-~~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~   84 (356)
T PRK08056         18 SPDQLLDFSANIN----PLGMPVSLKRAIIDNLDC--AERYPD-VEYRHLHQALARHH------QVPASWILAGNGETES   84 (356)
T ss_pred             ChhhEEEeccccC----CCCCCHHHHHHHHHHHHh--cccCcC-ccHHHHHHHHHHHh------CcChhhEEECCCHHHH
Confidence            3578999999975    377888999998877653  336876 46899999999998      5688999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+++++ .+|+ +++++|+|..|...++..|.+++.+++..++++.++ +.+.+.+.++++++++++||||||.+++.
T Consensus        85 l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~  161 (356)
T PRK08056         85 IFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPER  161 (356)
T ss_pred             HHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCH
Confidence            99999987 6776 677899999999999999999999998766677777 44555566788999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|++++++||+||+|.++.+.+....+.  +...+++|+++||||.|+++|+|+||++++++       +++
T Consensus       162 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-------~~~  232 (356)
T PRK08056        162 QLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD-------AAV  232 (356)
T ss_pred             HHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheeeecCCH-------HHH
Confidence            999999999999999999999999988754322221  22335789999999999999999999997542       366


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++... ..+++.+.|.+
T Consensus       233 ~~l~~~~~-~~~~~~~~~~~  251 (356)
T PRK08056        233 ARMRRQQM-PWSINAFAALA  251 (356)
T ss_pred             HHHHHhCC-CCchhHHHHHH
Confidence            77766443 33456666654

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-35  Score=270.37  Aligned_cols=237  Identities=23%  Similarity=0.381  Sum_probs=198.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|.+.    +++++.+.+++.+.+.......|+++.|..+||+++++++      ++++++|++|+|+++++
T Consensus        27 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l------~~~~~~v~~~~g~t~al   96 (380)
T PRK06225         27 DKEMIWMGQNTNH----LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL------GLDDDEALITAGATESL   96 (380)
T ss_pred             cCCeEEccCCCCC----CCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc------CCCCCcEEEeCCHHHHH
Confidence            5689999999853    6778889999998887655667988889999999999998      46788999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++++++.+||+|++++|+|..+...++..|.+++++++.. ++++.+|++.+++.++++++++++++|+||||.+++.
T Consensus        97 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~  176 (380)
T PRK06225         97 YLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTE  176 (380)
T ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCH
Confidence            999999999999999999999998888899999999998743 3457899999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|+++|+++|+|++|.++..+..   +...+. ..+++++.||||.++++|+|+||+++++        +++
T Consensus       177 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~~--------~l~  244 (380)
T PRK06225        177 EEIKEFAEIARDNDAFLLHDCTYRDFAREHT---LAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVATP--------DLI  244 (380)
T ss_pred             HHHHHHHHHHHHCCcEEEEehhHHHHhccCC---chhhcC-CCCEEEEeechhhcCCccceeEEEecCH--------HHH
Confidence            9999999999999999999999988764321   122222 2578999999999999999999999843        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++.......+.+.++|.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~  264 (380)
T PRK06225        245 EVVKSIVINDLGTNVIAQEA  264 (380)
T ss_pred             HHHHHHHhcccCCCHHHHHH
Confidence            77776543334566676654

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=7.9e-36  Score=270.49  Aligned_cols=229  Identities=19%  Similarity=0.217  Sum_probs=186.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+++|+|+.|+|    .+++|+.+.+++.+.+..  ...|++. +..+||+++++++      ++++++|++|+|+++++
T Consensus        42 ~~~~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai  108 (370)
T PRK09105         42 AEGAVFLNANEC----PLGPSPAARDAAARSAAL--SGRYDLE-LEDDLRTLFAAQE------GLPADHVMAYAGSSEPL  108 (370)
T ss_pred             CCCcEEecCCCC----CCCCCHHHHHHHHHHHHH--hcCCCCc-hHHHHHHHHHHHh------CcChhhEEEcCChHHHH
Confidence            356899999986    367788999998877653  2368775 4889999999987      57899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++.+++++||+|++++|+|..|...++..|.+++.+++..  ++.+|++.+++. .++++++++++||||||.+++.+
T Consensus       109 ~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~  185 (370)
T PRK09105        109 NYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRA  185 (370)
T ss_pred             HHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHH
Confidence            999999999999999999999999999999999999998753  467899999876 45688999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      +++++++.+ ++++++|+||+|.++...   .......+...++++++||||.||++|+|+||++++.        ++++
T Consensus       186 ~l~~l~~~~-~~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------~~i~  253 (370)
T PRK09105        186 DIEWLLANK-PAGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP--------DLLA  253 (370)
T ss_pred             HHHHHHHhC-CCCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH--------HHHH
Confidence            999999976 458999999999876532   1112222335689999999999999999999999743        4777


Q ss_pred             HHHhhhcccCCCccccccc
Q 022213          281 SIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++.. . ...++.+.|.+
T Consensus       254 ~l~~~-~-~~~~~~~~~~a  270 (370)
T PRK09105        254 KLARF-G-HNPLPVPAAAA  270 (370)
T ss_pred             HHHhc-C-CCCcCHHHHHH
Confidence            77765 2 23355555543

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=5.6e-35  Score=266.87  Aligned_cols=250  Identities=20%  Similarity=0.284  Sum_probs=184.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHh---cCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC---CCCEEEcCCH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVR---SGKFNCYATNSGIPPARRAIADYLSRDLPYKLS---ADDVYVTLGC  116 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~i~~t~g~  116 (301)
                      +.++.++|.-.. +..+   .+.+++.+.++   ......|+++.|.++||+++++++.+.++ ...   .++|++|+|+
T Consensus         4 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~   78 (388)
T PRK08637          4 TKYNATIGMATE-KGGP---MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNAL   78 (388)
T ss_pred             cceecceeeEec-CCCc---chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccch
Confidence            456777774321 1122   33344444333   23466899999999999999999977543 232   3689999999


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGN  191 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~n  191 (301)
                      ++++..++.+++++||.|++++|+|+.|...+. ..|.+++.+++.. +++++|++.+++.++    +.++++++++|||
T Consensus        79 ~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~N  157 (388)
T PRK08637         79 THGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFPNN  157 (388)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCCCC
Confidence            999999999999999999999999999988754 6899999998732 234689999998876    3445577889999


Q ss_pred             CcccCCCHHHHHHHHHHHHh-----CCCeEEEccCCcccccCCCCCCCc-ccc-CCCCCE--EEEecCcccCCCCcceeE
Q 022213          192 PCGNVFTYHHLQEIAEMARK-----LRVMVVADEVYGHLTFGSIPYTPM-GLF-GSIVPV--ITLGSISKRWLVPGWRFG  262 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~-----~~~~ii~D~~y~~~~~~~~~~~~~-~~~-~~~~~v--i~~~s~SK~~~~~G~rvG  262 (301)
                      |||.+++.+++++|+++|++     |+++||+||+|.++.|++....++ ..+ +..+++  ++++|+||.|++||+|+|
T Consensus       158 PTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG  237 (388)
T PRK08637        158 PTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVG  237 (388)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceE
Confidence            99999999999999999875     899999999999999876544332 222 233464  556799999999999999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhh----hc-ccCCCcccccccC
Q 022213          263 WLVTNDPNGIFQKSGIIDSIKDC----LS-IYSDIPTFIQVCE  300 (301)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~q~~~  300 (301)
                      |++++..+.  .++++++++...    .. ...++|.+.|.++
T Consensus       238 ~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~  278 (388)
T PRK08637        238 FITFGTKAG--SSQTVKEALEKKVKGLIRSNISNGPHPSQSAV  278 (388)
T ss_pred             EEEEccccC--CcHHHHHHHHHHHHHHhhcccCCCCcHHHHHH
Confidence            999764100  013466666432    11 2346788888764

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-35  Score=263.21  Aligned_cols=229  Identities=25%  Similarity=0.427  Sum_probs=195.2

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +++++|+.++.   | +++|+.+.+++.+.+.  .++.|+++ ...++++++++++..     .++++|++++|+++.|.
T Consensus        22 ~~~i~LssNen---P-~gp~~~~~~~~~~~~~--~~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~   89 (356)
T COG0079          22 PGIIKLSSNEN---P-YGPPPKVIEAIRAALD--KLNRYPDP-DYRELRAALAEYYGV-----VDPENVLVGNGSDELIE   89 (356)
T ss_pred             ccceeecCCCC---C-CCCCHHHHHHHHHHHH--hhccCCCC-cHHHHHHHHHHHhCC-----CCcceEEEcCChHHHHH
Confidence            46999999964   3 6778888888888776  55689886 689999999999932     67899999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      .++++++.+||+|+++.|+|..|...++..|.+++.++...   |..|++.+...++++++++++||||||||..++.++
T Consensus        90 ~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~  166 (356)
T COG0079          90 LLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREE  166 (356)
T ss_pred             HHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999998754   789999999999888999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS  281 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~  281 (301)
                      ++++++.+.+ +.++|+||+|.+|..    ...+.......|+++++||||.||++|+|+||++++        +++++.
T Consensus       167 l~~l~~~~~~-~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~--------~~~i~~  233 (356)
T COG0079         167 LRALLEALPE-GGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN--------PELIAA  233 (356)
T ss_pred             HHHHHHhCCC-CcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCC--------HHHHHH
Confidence            9999999988 999999999999774    222222224457999999999999999999998763        469999


Q ss_pred             HHhhhcccCCCccccccc
Q 022213          282 IKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       282 ~~~~~~~~~~~~~~~q~~  299 (301)
                      +++...-+ +.|.++|.+
T Consensus       234 l~~vr~p~-~v~~~a~~a  250 (356)
T COG0079         234 LNKVRPPF-NVSSPALAA  250 (356)
T ss_pred             HHHhcCCC-CCCHHHHHH
Confidence            99887633 455565543

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=2e-35  Score=267.27  Aligned_cols=233  Identities=15%  Similarity=0.222  Sum_probs=183.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ...++|+|+.|.+.    +++|+.+.+++.+.+..  ...|++. +..+||+++|+++      ++++++|++|+|++++
T Consensus        20 ~~~~~i~l~~~~n~----~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~it~G~~~~   86 (360)
T PRK07392         20 PPDAILDFSASINP----LGPPESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHH------QLPPEWILPGNGAAEL   86 (360)
T ss_pred             CcccEEEeCCcCCC----CCCCHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHh------CcChhhEEECCCHHHH
Confidence            34578999999642    66778888888877763  5579875 4689999999998      5788999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC---CCCHHHHHhhcccCccEEEEcCCCCCcccC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW---EVDLDAVEALADKNTAAMVIINPGNPCGNV  196 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  196 (301)
                      +..+++++. +||.|++++|+|..|...++..|++++.++++.+.++   ..+++.+++.. .+++++++++||||||.+
T Consensus        87 i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~  164 (360)
T PRK07392         87 LTWAGRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKL  164 (360)
T ss_pred             HHHHHHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCC
Confidence            999999875 6899999999999999999999999999998655543   35666666543 367889999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      ++++++.++   ++++++ +|+||+|.++.+++.....+..++...++|+++||||.|++||+|+||+++++        
T Consensus       165 ~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~--------  232 (360)
T PRK07392        165 WSREAILPL---LEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP--------  232 (360)
T ss_pred             cCHHHHHHH---HHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH--------
Confidence            996665554   557775 66699999998765322223334445689999999999999999999999843        


Q ss_pred             hHHHHHHhhhcccCCCcccccccC
Q 022213          277 GIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +++++++.... ..+++.++|.++
T Consensus       233 ~~~~~~~~~~~-~~~~s~~~q~~~  255 (360)
T PRK07392        233 DRLQRWQQWRD-PWPVNGLAAAAA  255 (360)
T ss_pred             HHHHHHHhhCC-CCCCCHHHHHHH
Confidence            47777766543 346788888764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.6e-35  Score=267.22  Aligned_cols=230  Identities=18%  Similarity=0.242  Sum_probs=190.1

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +.+++|+.|+|    .+++++.+.+++.+...  ....|++. +..+||+++|+++      ++++++|++|+|+++++.
T Consensus        32 ~~~~~l~~~~~----~~~~~~~~~~a~~~~~~--~~~~Y~~~-~~~~Lr~~ia~~~------~~~~~~I~it~G~~~~l~   98 (369)
T PRK08153         32 PFRARIGANES----GFGPSPSVIAAMREAAA--EIWKYGDP-ENHDLRHALAAHH------GVAPENIMVGEGIDGLLG   98 (369)
T ss_pred             cceeEecCCCC----CCCCCHHHHHHHHHHHH--HhhcCCCC-ccHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence            34579999996    37888899999887764  23468876 5799999999998      468899999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .++++++++||.|+++.|+|+.+...+...|.+++.++++.+   ..|++.+++.+ +.+++++++++||||||.+++.+
T Consensus        99 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~  175 (369)
T PRK08153         99 LIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAA  175 (369)
T ss_pred             HHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999998888889999999987432   47889887765 45788999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|++.|+ ++++||+||+|.++.+++. ..++..  ...++|+++||||.|++||+|+||++++.        ++++
T Consensus       176 ~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~~--------~~~~  243 (369)
T PRK08153        176 DIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGAP--------GTIK  243 (369)
T ss_pred             HHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeeeecCH--------HHHH
Confidence            9999999887 4899999999999887542 233322  23579999999999999999999999843        4777


Q ss_pred             HHHhhhcccCCCcccccccC
Q 022213          281 SIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~~  300 (301)
                      .+++.... .+.+.+.|.++
T Consensus       244 ~l~~~~~~-~~~s~~~q~~~  262 (369)
T PRK08153        244 AFDKVRNH-FGMNRIAQAAA  262 (369)
T ss_pred             HHHHhhcC-CCCCHHHHHHH
Confidence            77766543 45778888753

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=8e-36  Score=269.16  Aligned_cols=233  Identities=23%  Similarity=0.318  Sum_probs=195.1

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      ..+|+|+.|.|.    +++++.+.+++.+.+.  ....|++ .|..++|+++|+++      ++++++|++|+|+++++.
T Consensus        22 ~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~-~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~   88 (352)
T PRK03321         22 PGAIKLSSNETP----FGPLPSVRAAIARAAA--GVNRYPD-MGAVELRAALAEHL------GVPPEHVAVGCGSVALCQ   88 (352)
T ss_pred             ccceeccCCCCC----CCCCHHHHHHHHHHHH--hcCcCCC-CcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHH
Confidence            468999999864    6667789999887765  3446865 69999999999999      467889999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      .++..++++||+|+++.|+|..|...++..|.+++.++++++  +.++++.+++.++++++++++++|+||||.+++.++
T Consensus        89 ~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~  166 (352)
T PRK03321         89 QLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAE  166 (352)
T ss_pred             HHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHH
Confidence            999999999999999999999988888999999999987543  568999999999888999999999999999999888


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS  281 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~  281 (301)
                      +.++++.| ++++++|+||+|.++.+++....++..+...+++++++||||.|++||+|+||++++.        +++++
T Consensus       167 l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~~  237 (352)
T PRK03321        167 LARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP--------EVIAA  237 (352)
T ss_pred             HHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--------HHHHH
Confidence            88888865 4799999999999998865443444444455689999999999999999999999742        47888


Q ss_pred             HHhhhcccCCCccccccc
Q 022213          282 IKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       282 ~~~~~~~~~~~~~~~q~~  299 (301)
                      +++... ..+.+.++|.+
T Consensus       238 ~~~~~~-~~~~s~~~q~~  254 (352)
T PRK03321        238 LRKVAV-PFSVNSLAQAA  254 (352)
T ss_pred             HHHhcC-CCCCCHHHHHH
Confidence            876643 44677888764

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-35  Score=268.95  Aligned_cols=227  Identities=19%  Similarity=0.287  Sum_probs=186.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|++.    +++++.+.+++.+..   ....|++ .+..+||+++++++      ++++++|++|+|+++++
T Consensus        51 ~~~~i~l~~n~~p----~~~~~~v~~a~~~~~---~~~~Yp~-~~~~~lr~~ia~~~------~~~~~~I~~t~Ga~~~i  116 (380)
T PLN03026         51 PEDIVKLDANENP----YGPPPEVLEALGNMK---FPYVYPD-PESRRLRAALAEDS------GLESENILVGCGADELI  116 (380)
T ss_pred             ccceEEccCCCCC----CCCCHHHHHHHHhhH---hhccCCC-CCHHHHHHHHHHHh------CcChhhEEEcCCHHHHH
Confidence            5689999999853    566677888775421   2335776 46899999999998      46889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++++++++||+|++++|+|..|...++..|.+++.++.+  .++.+|++.+++.+ +++++++++++||||||.+++.
T Consensus       117 ~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~  194 (380)
T PLN03026        117 DLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISD  194 (380)
T ss_pred             HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCH
Confidence            99999999999999999999999988889999999999874  35779999999988 6789999999999999999998


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|++.+    +++|+||+|.++.+.+. .  .......+++|+++||||.|+++|+|+||++++.        +++
T Consensus       195 ~~l~~l~~~~----~~vi~DeaY~~~~~~~~-~--~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~--------~~i  259 (380)
T PLN03026        195 DDLLKILELP----ILVVLDEAYIEFSTQES-R--MKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL--------SII  259 (380)
T ss_pred             HHHHHHHhcC----CEEEEECcchhhcCCcc-h--HHHHHhCCCEEEEecchHhhcCccccceeeecCH--------HHH
Confidence            8888887743    89999999999876432 1  2223345689999999999999999999999743        578


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++... ..+.+.++|.+
T Consensus       260 ~~l~~~~~-~~~~~~~~q~a  278 (380)
T PLN03026        260 EYLWRAKQ-PYNVSVAAEVA  278 (380)
T ss_pred             HHHHHhcC-CCCCCHHHHHH
Confidence            88877654 24567777765

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-35  Score=267.10  Aligned_cols=229  Identities=23%  Similarity=0.358  Sum_probs=190.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~a  119 (301)
                      +.++|+|+.|+|    .+++|+.+.+++.+.+....+..|++ .|..+||+++++++.      ... ++|++|+|++++
T Consensus        25 ~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~   93 (356)
T PRK04870         25 ATGMVKLDAMEN----PYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDEL   93 (356)
T ss_pred             CCCceeCcCCCC----CCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHH
Confidence            468999999986    37888999999998886555667987 578999999999983      333 589999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~  198 (301)
                      +..++++++++||+|++++|+|..|...++..|++++.++++  +++.+|++.+++.++ .+++++++++||||||.+++
T Consensus        94 i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~  171 (356)
T PRK04870         94 IQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFD  171 (356)
T ss_pred             HHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999885  346799999999886 47899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .+++++|+++|   +.++|+||+|.++.+..  ..  ..+...+++|+++|||| +++||+|+||++++.        ++
T Consensus       172 ~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~--~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~--------~~  235 (356)
T PRK04870        172 DADVERIIEAA---PGLVVVDEAYQPFAGDS--WL--PRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHP--------AW  235 (356)
T ss_pred             HHHHHHHHHHC---CCEEEEECCchhhcCcc--hH--HHHhhCCCEEEEecchh-hhhHHHhhhhhhCCH--------HH
Confidence            99999999988   67899999999876432  11  11233457999999999 799999999999743        47


Q ss_pred             HHHHHhhhcccCCCccccccc
Q 022213          279 IDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++.... ..+.+.++|.+
T Consensus       236 i~~~~~~~~-~~~~~~~~q~~  255 (356)
T PRK04870        236 IAELDKVRP-PYNVNVLTQAT  255 (356)
T ss_pred             HHHHHHccC-CCcCCHHHHHH
Confidence            787776553 33566777754

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.3e-35  Score=262.72  Aligned_cols=231  Identities=22%  Similarity=0.353  Sum_probs=188.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+..++|+.|+|    .+++|+.+.+++.+.+.......|++. +..+||+++|+++      ++++++|++|+|+++++
T Consensus        21 ~~~~~~l~~~~~----~~~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~it~G~~~~l   89 (351)
T PRK14807         21 IPYKYKMDANET----PFELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYC------SVVPTNIFVGNGSDEII   89 (351)
T ss_pred             CCceeEccCCCC----CCCCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHh------CCCcccEEEecCHHHHH
Confidence            346799999996    378889999999888765556678764 5689999999998      56889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++++++++||+|++++|+|..+...++..|.+++.++++  .++.+|++.+++.++. +++++++++|+||||.+++.
T Consensus        90 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~  167 (351)
T PRK14807         90 HLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER  167 (351)
T ss_pred             HHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence            99999999999999999999999988889999999999875  3467999999998865 78999999999999999997


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++++++   +++.++|+||+|.++. + ....+  ......++|+++||||.|++||+|+||++++.        +++
T Consensus       168 ~~l~~l~~---~~~~~~ivDe~y~~~~-~-~~~~~--~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~--------~~~  232 (351)
T PRK14807        168 EDIIKIIE---KSRGIVVVDEAYFEFY-G-NTIVD--VINEFENLIVLRTLSKAFGLAGLRVGYAVANE--------NIL  232 (351)
T ss_pred             HHHHHHHH---hCCCEEEEeCcchhhc-c-cchHH--HhhhCCCEEEEecchHhcccchhceeeeecCH--------HHH
Confidence            77776655   5677899999998863 2 22222  12334689999999999999999999999742        477


Q ss_pred             HHHHhhhcccCCCcccccccC
Q 022213          280 DSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++++.... ..+.+.++|.++
T Consensus       233 ~~~~~~~~-~~~~~~~~q~~~  252 (351)
T PRK14807        233 KYLNLVKS-PYNINSLSQVIA  252 (351)
T ss_pred             HHHHHccC-CCCcCHHHHHHH
Confidence            88876654 245677787653

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-35  Score=265.35  Aligned_cols=228  Identities=17%  Similarity=0.302  Sum_probs=185.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|+|.    +++++.+.+++.+.+.. ....|++. |..+||+++|+++      ++++++|++|+|+++++
T Consensus        23 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~-~~~~y~~~-~~~~lr~aia~~~------~~~~~~I~it~G~~~al   90 (353)
T PRK05387         23 LAKLIKLNTNENP----YPPSPKVLEAIRAALGD-DLRLYPDP-NADALRQAIAAYY------GLDPEQVFVGNGSDEVL   90 (353)
T ss_pred             ccceeeccCCCCC----CCCCHHHHHHHHHHhhh-hhhcCCCC-cHHHHHHHHHHHh------CCCHHHEEEcCCHHHHH
Confidence            4578999999963    66678888998877653 24578765 6699999999998      47889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++++++++||.|++++|+|+.|...++..|++++.++++  +++.+|++.+++    .++.+++++||||||.+++.+
T Consensus        91 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~  164 (353)
T PRK05387         91 AHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLA  164 (353)
T ss_pred             HHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHH
Confidence            99999999999999999999999998899999999999874  356799998874    457889999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|++.++  ++++|+||+|.++.  +....++  .....++|+++||||.|+++|+|+||++++.        ++++
T Consensus       165 ~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~~~  230 (353)
T PRK05387        165 EIERILAANP--DSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--------ELIE  230 (353)
T ss_pred             HHHHHHHhCC--CcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhceeeecCH--------HHHH
Confidence            9999988653  89999999998753  2222222  2334679999999999999999999999742        4778


Q ss_pred             HHHhhhcc--cCCCcccccccC
Q 022213          281 SIKDCLSI--YSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~--~~~~~~~~q~~~  300 (301)
                      +++.....  ..+.+.+.|.++
T Consensus       231 ~l~~~~~~~~~~~~~~~~q~~~  252 (353)
T PRK05387        231 ALNRVKNSFNSYPLDRLAQAGA  252 (353)
T ss_pred             HHHHhhccCCCCCcCHHHHHHH
Confidence            87776542  235677777653

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=6.8e-35  Score=264.56  Aligned_cols=234  Identities=20%  Similarity=0.287  Sum_probs=193.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ++.++|+|+.|++.    +++++.+.+++.+.+.  ....|++.. ..+||+++|+++      ++++++|++|+|++++
T Consensus        30 ~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~t~G~~~~   96 (367)
T PRK02731         30 GIADIIKLASNENP----LGPSPKAIEAIRAAAD--ELHRYPDGS-GFELKAALAEKF------GVDPERIILGNGSDEI   96 (367)
T ss_pred             CCCceEEecCCCCC----CCCCHHHHHHHHHHHH--hhcCCCCCc-HHHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence            36789999999853    4567788888888765  345788754 479999999998      4678899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++++++++||.|++++|+|..+...++..|.+++.++.   +++.+|++.+++.++++++++++++||||||.+++.
T Consensus        97 l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  173 (367)
T PRK02731         97 LELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA  173 (367)
T ss_pred             HHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCH
Confidence            99999999999999999999999988888889999998876   456799999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++++++.|+ +++++|+|++|..+.+.+....++..++...++|+++||||.|+++|+|+||++++.        +++
T Consensus       174 ~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~--------~~~  244 (367)
T PRK02731        174 EEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP--------EII  244 (367)
T ss_pred             HHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH--------HHH
Confidence            99999999875 699999999999988765444444434445689999999999999999999999743        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++..... .+.+.++|.+
T Consensus       245 ~~l~~~~~~-~~~~~~~~~~  263 (367)
T PRK02731        245 DALNRVRQP-FNVNSLALAA  263 (367)
T ss_pred             HHHHHccCC-CCCCHHHHHH
Confidence            777766542 2456677754

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-34  Score=258.99  Aligned_cols=227  Identities=22%  Similarity=0.346  Sum_probs=183.8

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|.+.    +++++.+.+++.+.+.......|++ .|..+||+++++++      ++++++|++|+|+++++
T Consensus        17 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l   85 (337)
T PRK03967         17 GNYRIWLDKNENP----FDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFY------GLDAENIAVGNGSDELI   85 (337)
T ss_pred             CCceEEecCCCCC----CCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHh------CcCcceEEEcCCHHHHH
Confidence            3468999999863    6777888899888876444567875 69999999999999      47889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..+++.+  +||+|+++.|+|..|...++..|.+++.+++..  ++.+|++.+++.. ++++++++++||||||.+++.+
T Consensus        86 ~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~  160 (337)
T PRK03967         86 SYLVKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEE  160 (337)
T ss_pred             HHHHHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHH
Confidence            9988876  799999999999999888899999999998753  4679999998865 4678888999999999999976


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++.+++    ++++++|+||+|.++...  ...+  ......++|+++||||.|++||+|+||+++++        ++++
T Consensus       161 ~l~~i~----~~~~~ii~De~y~~~~~~--~~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~--------~~i~  224 (337)
T PRK03967        161 EILKVL----ETGKPVVLDEAYAEFSGK--SLIG--LIDEYPNLILLRTFSKAFGLAGIRAGYAIANE--------EIID  224 (337)
T ss_pred             HHHHHH----hcCCEEEEECchhhhccc--chHH--HHhhCCCEEEEecchHhhcchhhhheeeecCH--------HHHH
Confidence            666654    369999999999987532  2211  12234579999999999999999999999743        4778


Q ss_pred             HHHhhhcccCCCcccccccC
Q 022213          281 SIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++++..+. .+.+.++|.++
T Consensus       225 ~~~~~~~~-~~~~~~~q~~~  243 (337)
T PRK03967        225 ALYRIKPP-FSLNILTMKIV  243 (337)
T ss_pred             HHHhhcCC-CCCCHHHHHHH
Confidence            88776553 35677787653

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-34  Score=257.24  Aligned_cols=224  Identities=20%  Similarity=0.299  Sum_probs=179.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++|+|+.|+|    .+++|+.+.+++.+.+..+.+..|++. |..+||+++++++.+.+   +++++|++|+|++++
T Consensus        17 ~~~~~i~l~~~~~----~~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~   88 (335)
T PRK14808         17 EKRDRTYLALNEN----PFPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVSVGNGADEI   88 (335)
T ss_pred             CCCceeEecCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHH
Confidence            4678999999996    478889999998887765445457764 89999999999996632   689999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+++++    |.|++++|+|..|...++..|++++.++++.+  +.++...    + .+++++++++||||||.+++.
T Consensus        89 i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~  157 (335)
T PRK14808         89 IYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFER  157 (335)
T ss_pred             HHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCH
Confidence            99999988    78999999999999999999999999987542  3344322    2 246889999999999999998


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+    +++++||+||+|.++.  +....+  ......++|+++||||.|+++|+|+||++++.        +++
T Consensus       158 ~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~--~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~--------~~~  221 (335)
T PRK14808        158 EEIERIL----KTGAFVALDEAYYEFH--GESYVD--LLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE--------KFI  221 (335)
T ss_pred             HHHHHHH----hcCCEEEEECchhhhc--CCchHH--HHHhCCCEEEEEechhhccCcccceEEEEeCH--------HHH
Confidence            8888886    4799999999999974  222222  12233589999999999999999999999853        488


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++... ..+.+.++|.+
T Consensus       222 ~~l~~~~~-~~~~~~~~q~a  240 (335)
T PRK14808        222 DAYNRVRL-PFNVSYVSQMF  240 (335)
T ss_pred             HHHHHhcC-CCCCCHHHHHH
Confidence            88877653 34567777765

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=8.9e-34  Score=255.25  Aligned_cols=231  Identities=23%  Similarity=0.424  Sum_probs=190.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|++.    +++|+.+.+++.++..  ....|++..+ .++|+++++++      ++++++|++|+|+++++
T Consensus        18 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~y~~~~~-~~lr~~ia~~~------~~~~~~i~~~~G~~~~l   84 (346)
T TIGR01141        18 GKEVIKLNSNENP----FGPPPKAKEALRAEAD--KLHRYPDPDP-AELKQALADYY------GVDPEQILLGNGSDEII   84 (346)
T ss_pred             CCceEEccCCCCC----CCCCHHHHHHHHHhHH--HhhcCCCCCH-HHHHHHHHHHh------CcChHHEEEcCCHHHHH
Confidence            4689999999963    6778889999988764  2347887665 89999999998      36788999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++.+++++||+|++++|+|..+...++..|.+++.+++..+  +.+|++.+++.+.++++++++++|+||||.+++.+
T Consensus        85 ~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~  162 (346)
T TIGR01141        85 ELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRS  162 (346)
T ss_pred             HHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence            9999999999999999999999888888899999999987543  56899999998877899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      +++++++.|+ +++++|+|++|..+.+.+. +.  .......++|+++|+||.|+++|+|+||++++.        ++++
T Consensus       163 ~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~-~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~~  230 (346)
T TIGR01141       163 DIEAVLERTP-EDALVVVDEAYGEFSGEPS-TL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA--------EIID  230 (346)
T ss_pred             HHHHHHHhCC-CCcEEEEECchhhhcCCcc-HH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCH--------HHHH
Confidence            9999999887 7999999999997765321 11  112223468999999999999999999999743        4777


Q ss_pred             HHHhhhcccCCCccccccc
Q 022213          281 SIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++.... ..+.+.++|.+
T Consensus       231 ~~~~~~~-~~~~~~~~~~~  248 (346)
T TIGR01141       231 ALNKVRA-PFNLSRLAQAA  248 (346)
T ss_pred             HHHhccC-CCCCCHHHHHH
Confidence            7776543 23456677654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=5.9e-33  Score=246.24  Aligned_cols=190  Identities=16%  Similarity=0.281  Sum_probs=160.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..++|+|+.|++   | ++ |+.+.+++.++++.  ...|+.   ...||+++++++.         ++|++|+|+++++
T Consensus         7 ~~~~i~l~~~~n---p-~~-p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al   67 (311)
T PRK08354          7 EEGLIDFSASVN---P-YP-PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEAL   67 (311)
T ss_pred             ccceeEecCCCC---C-CC-CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHH
Confidence            567999999953   2 33 46788888877653  346754   3679999999872         4799999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++..+ .+||+|++++|+|..|...++..|.+++.++        +|++.+++.++ +++.+++++||||||.+++.+
T Consensus        68 ~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~  137 (311)
T PRK08354         68 YLIGILA-LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFK  137 (311)
T ss_pred             HHHHHhh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHH
Confidence            9888655 4899999999999999999999999987642        57888988776 567899999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++++|+++|+++|+++|+||+|.++.+++...       ...++|+++||||+|++||+|+||+++
T Consensus       138 ~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~-------~~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        138 ELKPLLDAVEDRNALLILDEAFIDFVKKPESP-------EGENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHHHHHHHhhhcCcEEEEeCcchhcccccccc-------CCCcEEEEeccHhhcCCccceeeeeee
Confidence            99999999999999999999999998864211       145799999999999999999999997

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=5.9e-33  Score=248.18  Aligned_cols=211  Identities=19%  Similarity=0.206  Sum_probs=162.5

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      .++|+|+.|..   |..+.++.+.+   ..+.     .|+..  ..+||+++++++        ..++|++|+|++++|.
T Consensus        20 ~~~i~l~~ne~---p~~~~~~~~~~---~~~~-----~yp~~--~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~   78 (330)
T PRK05664         20 ADWLDLSTGIA---PWPWPVPAIPA---DAWA-----RLPET--DDGLEAAARAYY--------GAPQLLPVAGSQAAIQ   78 (330)
T ss_pred             HHheeecCCcC---CCCCCCcccCH---HHHH-----hCCCC--hHHHHHHHHHHh--------CCCCEEECcCHHHHHH
Confidence            46899999942   21112122211   2222     47653  389999999998        3479999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      .++.  +.+||+|++++|+|+.|...++..|.+++.+++          +.++..++ +++++++++||||||.+++.++
T Consensus        79 ~~~~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~----------~~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~  145 (330)
T PRK05664         79 ALPR--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE----------AEVEAALD-SLDVLVVVNPNNPTGRRFDPAR  145 (330)
T ss_pred             HHHH--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEech----------hhHhhhhc-CCCEEEEeCCcCCCCCccCHHH
Confidence            8863  579999999999999999999999999998865          23444443 5778899999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS  281 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~  281 (301)
                      +++|+++|++++++||+||+|.++..    ..++..+...+++|+++||||.|++||+|+||++++.        +++++
T Consensus       146 l~~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~--------~l~~~  213 (330)
T PRK05664        146 LLAWHARLAARGGWLVVDEAFMDNTP----QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEP--------ALLRA  213 (330)
T ss_pred             HHHHHHHHHhcCCEEEEECCcccCCC----cccccccccCCCEEEEeeccccccCCCcceEEEEeCH--------HHHHH
Confidence            99999999999999999999987541    1344445555689999999999999999999999843        47888


Q ss_pred             HHhhhcccCCCccccccc
Q 022213          282 IKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       282 ~~~~~~~~~~~~~~~q~~  299 (301)
                      +++... ..+.+.+.|.+
T Consensus       214 ~~~~~~-~~~~~~~~~~~  230 (330)
T PRK05664        214 LAELLG-PWTVSGPTRWL  230 (330)
T ss_pred             HHHhcC-CCCCCHHHHHH
Confidence            877654 22345566554

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-33  Score=254.44  Aligned_cols=223  Identities=22%  Similarity=0.382  Sum_probs=177.9

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      ...|+|+.+++.    +++++.+        .......|++. ...+|++++++++      ++++++|++|+|+++++.
T Consensus        28 ~~~~~l~~Nenp----~~~~~~~--------~~~~~~~Yp~~-~~~~l~~~~a~~~------g~~~~~I~~~~Gs~e~i~   88 (351)
T PRK01688         28 NGDVWLNANEYP----TAVEFQL--------TQQTLNRYPEC-QPKAVIENYAAYA------GVKPEQVLVSRGADEGIE   88 (351)
T ss_pred             CCceEecCCCCC----CCCChhh--------cccccccCCCC-ChHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence            356999999752    4455432        11234568775 3478999999997      578999999999999999


Q ss_pred             HHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .++++++++| |.|+++.|+|..|...++..|.+++.+++..  ++.+|++.+++.+ .++++++++|||||||.+++.+
T Consensus        89 ~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~  165 (351)
T PRK01688         89 LLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQ  165 (351)
T ss_pred             HHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHH
Confidence            9999999987 9999999999999999999999999998743  4789999999887 5789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|++.|++ +.++|+||+|.+|....   .....+....++|+++||||.||++|+|+||++++.        ++++
T Consensus       166 ~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~--------~~i~  233 (351)
T PRK01688        166 DLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE--------EVIN  233 (351)
T ss_pred             HHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCH--------HHHH
Confidence            99999999976 67899999999976321   111222345689999999999999999999998743        5778


Q ss_pred             HHHhhhcccCCCccccccc
Q 022213          281 SIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~  299 (301)
                      .+++.... .+.+.+.|.+
T Consensus       234 ~l~~~~~~-~~v~~~~~~~  251 (351)
T PRK01688        234 LLLKVIAP-YPLSTPVADI  251 (351)
T ss_pred             HHHhccCC-CCCCHHHHHH
Confidence            88776542 3455555543

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.2e-33  Score=252.27  Aligned_cols=203  Identities=22%  Similarity=0.390  Sum_probs=167.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceE
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEV  155 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~  155 (301)
                      +..|+++ +..+||+++|+++      ++++++|++|+|+++++..++++++.+| |+|++++|+|..|...++..|.++
T Consensus        53 ~~~Y~~~-~~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~  125 (364)
T PRK04781         53 TRRYPDP-QPPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPL  125 (364)
T ss_pred             hccCCCC-CHHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEE
Confidence            3478875 4689999999998      4688999999999999999999999998 899999999999988889999999


Q ss_pred             EEeecCC-CCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213          156 RHFDLLP-ERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       156 ~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~  233 (301)
                      +.+++.. ++++.+|++++.+.+ .++++++++++||||||.+++.++++++++.|+ ++++||+||+|.+|.+..   .
T Consensus       126 ~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~---~  201 (364)
T PRK04781        126 VEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP---S  201 (364)
T ss_pred             EEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc---c
Confidence            9999743 456778988886544 567899999999999999999999999999885 478999999999987632   1


Q ss_pred             CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      .+...+..+++|+++||||.|++||+|+||++++.        ++++++++.... .+.+.+.|.+
T Consensus       202 ~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~--------~l~~~l~~~~~~-~~~~~~~~~~  258 (364)
T PRK04781        202 AVGLLARYDNLAVLRTLSKAHALAAARIGSLIANA--------ELIAVLRRCQAP-YPVPTPCAAL  258 (364)
T ss_pred             hHHHHhhCCCEEEEecChhhcccccceeeeeeCCH--------HHHHHHHhccCC-CCCCHHHHHH
Confidence            12223445689999999999999999999999743        588888877553 3456666653

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=7.9e-33  Score=250.49  Aligned_cols=228  Identities=21%  Similarity=0.396  Sum_probs=182.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE-cCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV-TLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-t~g~~~a  119 (301)
                      +.++|+|+.|++.    +++++.+.+++.+.+..  ...|+++. ..++|+++++++      ++++++|++ |+|++++
T Consensus        33 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~~~~Ga~~~   99 (361)
T PRK00950         33 PESIIKLGSNENP----LGPSPKAVEAIEKELSK--IHRYPEPD-APELREALSKYT------GVPVENIIVGGDGMDEV   99 (361)
T ss_pred             ccceEEccCCCCC----CCCCHHHHHHHHHHHHh--hcCCCCCC-HHHHHHHHHHHh------CCCHHHEEEeCCCHHHH
Confidence            4589999999853    56677888888776653  34687754 489999999998      467889999 7999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++++++++||+|++++|+|..+...++..|.+++.++.  ++++.++++.+++.++.+++++++++|+||||.+++.
T Consensus       100 i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~  177 (361)
T PRK00950        100 IDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE  177 (361)
T ss_pred             HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCH
Confidence            99999999999999999999999998888999999998874  3456799999999888788999999999999999996


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|   |+++++++|+|++|.++..  ....++  ....+++++++||||.|++||+|+||+++++        +++
T Consensus       178 ~~l~~l---~~~~~~~li~De~y~~~~~--~~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~--------~~~  242 (361)
T PRK00950        178 EDIRKI---LESTDALVFVDEAYVEFAE--YDYTPL--ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE--------WLI  242 (361)
T ss_pred             HHHHHH---HHHCCcEEEEECchhhhCc--cchHHH--HHhcCCEEEEEeehHhhcCchhhcchhcCCH--------HHH
Confidence            665555   5678999999999998762  222221  1233578999999999999999999998743        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++.... .+.+.++|.+
T Consensus       243 ~~~~~~~~~-~~~~~~~~~~  261 (361)
T PRK00950        243 DYYMRAKTP-FSLTRLSQAA  261 (361)
T ss_pred             HHHHHhcCC-CCCCHHHHHH
Confidence            777776543 2355666654

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=4.8e-32  Score=244.28  Aligned_cols=221  Identities=18%  Similarity=0.255  Sum_probs=173.8

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+++++|+.|++.    +++|+.+.+++.+.+..  ...|++..|..+||+++++++      ++++++|++|+|+++++
T Consensus        21 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al   88 (349)
T PRK07908         21 GPGLLDFAVNVRH----DTPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGF   88 (349)
T ss_pred             CCCeEEecCCCCC----CCCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHH
Confidence            6789999999863    67788899998887753  457998889999999999998      46889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..+++  +++ +.++++.|+|..+...++..|++++.++++.+  +.+|++.+    ++++++++++|||||||.+++.+
T Consensus        89 ~~~~~--l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~  159 (349)
T PRK07908         89 ALLAR--LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE  159 (349)
T ss_pred             HHHHh--cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH
Confidence            99988  456 46778899999999999999999999988543  66888754    34688999999999999999966


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++.   ++|+ ++.++|+||+|.++.++ . ..++... ...++++++||||.|+++|+|+||++++.        ++++
T Consensus       160 ~l~---~l~~-~~~~iIvDe~y~~~~~~-~-~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~~~~~--------~~~~  224 (349)
T PRK07908        160 QLL---ALRR-PGRILVVDEAFADAVPG-E-PESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYALGAP--------DVLA  224 (349)
T ss_pred             HHH---HHHh-cCCEEEEECcchhhccC-C-ccccccc-cCCCEEEEeecccccCCccceeeeeecCH--------HHHH
Confidence            554   5554 47788899999987543 2 3344332 23479999999999999999999999743        4777


Q ss_pred             HHHhhhcccCCCcccccc
Q 022213          281 SIKDCLSIYSDIPTFIQV  298 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~  298 (301)
                      +++..... ...+++.|.
T Consensus       225 ~~~~~~~~-~~~~~~~~~  241 (349)
T PRK07908        225 RLTRGRAH-WPVGTLQLE  241 (349)
T ss_pred             HHHhcCCC-CCccHHHHH
Confidence            77765432 234444443

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-33  Score=239.36  Aligned_cols=216  Identities=24%  Similarity=0.425  Sum_probs=188.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCc
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLP--YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQV  153 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~  153 (301)
                      +..|.+-.|++++|+++|+|+.+.++  +..+|+++++++|+|.+.+.+...|++|||..++|.|.|+++..-++ +.|+
T Consensus       114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgv  193 (471)
T KOG0256|consen  114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGV  193 (471)
T ss_pred             HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCc
Confidence            45788889999999999999998654  45789999999999999999999999999999999999999976665 4689


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF  227 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~  227 (301)
                      +++++.+..+++|+++.+.+|.++.+      +.+.++++||+||.|.+++++++..++++|.++|+.+|+||+|+..+|
T Consensus       194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF  273 (471)
T KOG0256|consen  194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVF  273 (471)
T ss_pred             eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccccc
Confidence            99999999999999999999987743      578899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCC-----CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          228 GSIPYTPMGLFGS-----IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       228 ~~~~~~~~~~~~~-----~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +...+.++.++..     .++|.+++|+||.||+||+|+|.+...+.       +++...++..+ +...|...|..+
T Consensus       274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne-------~VvsaA~kmss-f~~vSs~tQ~~l  343 (471)
T KOG0256|consen  274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE-------DVVSAATKMSS-FGLVSSQTQYLL  343 (471)
T ss_pred             CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh-------HHHHHHHHHhh-ccCCcHHHHHHH
Confidence            9888888776543     34699999999999999999999997654       47788777766 344666777643

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.3e-32  Score=244.63  Aligned_cols=204  Identities=20%  Similarity=0.281  Sum_probs=163.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      .+|+|+.++.   | +..       .      .....|+.+ ...+||+++|+++      ++++++|++|+|+++++..
T Consensus        17 ~~i~l~~Nen---p-~~~-------~------~~~~~Yp~~-~~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~   72 (332)
T PRK06425         17 RIIDFSANIN---D-FMD-------I------GDISIYPEI-SYTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYR   72 (332)
T ss_pred             CEEEeccccC---C-CcC-------h------hhcccCcCc-CHHHHHHHHHHHh------CCCcceEEECCCHHHHHHH
Confidence            6899999964   2 210       0      123368764 4789999999998      5688999999999999999


Q ss_pred             HHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                      +++ ++++| .|++++|+|..|...++..|++++.++++.   +..+.+.++.   .+++++++++||||||.+++.+++
T Consensus        73 ~~~-~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~  144 (332)
T PRK06425         73 LLS-YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSL  144 (332)
T ss_pred             HHH-HhCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHH
Confidence            997 46776 577779999999999999999999999853   3456655543   378899999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI  282 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~  282 (301)
                      ++|+++|++++++||+||+|.++.+++. ..........+++|+++||||.|++||+|+||++++.        ++++++
T Consensus       145 ~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~--------~li~~l  215 (332)
T PRK06425        145 LTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD--------YNMKIS  215 (332)
T ss_pred             HHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH--------HHHHHH
Confidence            9999999999999999999999987532 2222222334689999999999999999999999853        477777


Q ss_pred             Hhhhc
Q 022213          283 KDCLS  287 (301)
Q Consensus       283 ~~~~~  287 (301)
                      ++...
T Consensus       216 ~~~~~  220 (332)
T PRK06425        216 RKITE  220 (332)
T ss_pred             HHcCC
Confidence            76543

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=4.3e-32  Score=243.28  Aligned_cols=212  Identities=16%  Similarity=0.212  Sum_probs=162.6

Q ss_pred             CCeeeccCCCCCCCCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTA-VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQA  119 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~a  119 (301)
                      ..+|+|+.+..   | +++| +.+..   ..+     ..|+.. . .+||+++++++      ++. +++|++|+|++++
T Consensus        24 ~~~i~ls~Nen---p-~~~~~~~~~~---~~~-----~~Yp~~-~-~~L~~~ia~~~------~~~~~~~I~i~~Gs~e~   83 (339)
T PRK06959         24 DAWLDLSTGIN---P-HGYPVPPVPA---DAW-----RRLPED-D-DGLAACAARYY------GAPDAAHVLPVAGSQAA   83 (339)
T ss_pred             hhhceeccCCC---C-CCCCCCCCCH---HHH-----HhCCCc-h-HHHHHHHHHHh------CCCCcccEEECcCHHHH
Confidence            56899999963   2 2222 11111   222     258764 3 89999999998      344 5899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+.. ++++|| |++++|+|..|...++..|.+++.++.+.        +.+    .+..+.+++++||||||.+++.
T Consensus        84 i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~  149 (339)
T PRK06959         84 IRALPA-LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPA  149 (339)
T ss_pred             HHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCH
Confidence            987755 567877 88999999999999999999998887532        222    2245789999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|++.|++++.++|+||+|.++.+.    .++..+....++|+++||||.|++||+|+||++++.        +++
T Consensus       150 ~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~--------~li  217 (339)
T PRK06959        150 ARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAP--------ALL  217 (339)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEEecCH--------HHH
Confidence            99999999999999999999999997643    233333234679999999999999999999999843        588


Q ss_pred             HHHHhhhcccCCCcccccccC
Q 022213          280 DSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +++++... ..+.+.+.|.++
T Consensus       218 ~~l~~~~~-~~~vs~~~q~a~  237 (339)
T PRK06959        218 AALRDALG-AWTVSGPARHAV  237 (339)
T ss_pred             HHHHHhcC-CCCCcHHHHHHH
Confidence            88888765 334677777653

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-32  Score=248.46  Aligned_cols=220  Identities=20%  Similarity=0.388  Sum_probs=173.9

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      .++|+|+.|++.    +++++.+      ...  ....|++. +..+||+++|+++      ++++++|++|+|+++++.
T Consensus        31 ~~~~~l~~ne~~----~~~~~~~------~~~--~~~~Yp~~-~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~   91 (354)
T PRK04635         31 RGDIWINANESP----FNNEYKL------DLA--RLNRYPEC-QPPELINAYSAYA------GVAPEQILTSRGADEAIE   91 (354)
T ss_pred             CCcEEeeCCCCC----CCCChhh------hhH--HhccCCCC-CHHHHHHHHHHHh------CcCHHHEEEeCCHHHHHH
Confidence            467999999853    4444332      111  23478875 5799999999997      578999999999999999


Q ss_pred             HHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .++++++++| |+|+++.|+|..|...++..|++++.+++..  ++.+|.+.++. + .+++++++++||||||.+++.+
T Consensus        92 ~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~  167 (354)
T PRK04635         92 LLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRA  167 (354)
T ss_pred             HHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHH
Confidence            9999999998 9999999999999988999999999999853  46789888874 3 5789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|++.|+  +++||+||+|.++.... ....+  .....++|+++||||.|+++|+|+||++++.        ++++
T Consensus       168 ~l~~l~~~~~--~~~vivDeay~~~~~~~-s~~~~--~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~--------~~~~  234 (354)
T PRK04635        168 DIEQLIEMTP--DAIVVVDEAYIEFCPEY-SVADL--LASYPNLVVLRTLSKAFALAGARCGFTLANE--------ELIE  234 (354)
T ss_pred             HHHHHHHhCC--CcEEEEeCchHhhccCc-chHHH--HhhCCCEEEEechHHHhhhhHHHHhhhhCCH--------HHHH
Confidence            9999999876  49999999999876321 11111  2234679999999999999999999998743        4777


Q ss_pred             HHHhhhcccCCCcccccc
Q 022213          281 SIKDCLSIYSDIPTFIQV  298 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~  298 (301)
                      .++.... ..+.+.+.|.
T Consensus       235 ~l~~~~~-~~~~~~~~~~  251 (354)
T PRK04635        235 ILMRVIA-PYPVPLPVSE  251 (354)
T ss_pred             HHHhhcC-CCCCCHHHHH
Confidence            7766543 2344555553

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.98  E-value=3.6e-31  Score=236.68  Aligned_cols=218  Identities=21%  Similarity=0.310  Sum_probs=173.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ..+++++|+.|.|.    +++|  ..+...     ..+.+|+++.+ +++|+++++++      ++++++|++|+|++++
T Consensus        15 ~~~~~~~~~~~~~~----~~~~--~~~~~~-----~~~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~G~~~~   76 (330)
T TIGR01140        15 PPEDWLDFSTGINP----LGPP--VPPIPA-----SAWARYPDPEY-DELRAAAAAYY------GLPAASVLPVNGAQEA   76 (330)
T ss_pred             ChhheeEccccCCC----CCCC--hhhcch-----HHHhhCCCccH-HHHHHHHHHHh------CCChhhEEECCCHHHH
Confidence            35679999999854    2333  222111     12447888765 99999999998      4678999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+.+. +.+| .|++++|+|..+...++..|++++.++         |++.+++.++ +++++++++|+||||.+++.
T Consensus        77 i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~  144 (330)
T TIGR01140        77 IYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE-ELDVLVLCNPNNPTGRLIPP  144 (330)
T ss_pred             HHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCH
Confidence            9998766 4677 799999999999999999999988775         7888988884 57789999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|+++|+++|+|++|.++.+..    ++..+ +..+++|+++||||.|+++|+|+||+++++        ++
T Consensus       145 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--------~~  212 (330)
T TIGR01140       145 ETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP--------AL  212 (330)
T ss_pred             HHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCCH--------HH
Confidence            999999999999999999999999877542    22222 234679999999999999999999999843        47


Q ss_pred             HHHHHhhhcccCCCcccccccC
Q 022213          279 IDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      +++++..... .+.+.++|.++
T Consensus       213 ~~~l~~~~~~-~~~s~~~q~~~  233 (330)
T TIGR01140       213 LARLREALGP-WTVNGPARAAG  233 (330)
T ss_pred             HHHHHhcCCC-CCchHHHHHHH
Confidence            7777776542 34566777653

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.97  E-value=7.3e-31  Score=228.86  Aligned_cols=276  Identities=20%  Similarity=0.270  Sum_probs=200.4

Q ss_pred             cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHH--------H----------H
Q 022213            7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAED--------A----------I   68 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~--------~----------~   68 (301)
                      ...+++.+.+.+..+.++.+.+....     .+.+.++|+|+.|.|+.. .|+......+        .          +
T Consensus         6 ~dys~~ls~es~srk~~p~~~~~~~~-----s~~~i~~i~lagGlPnp~-~fp~~~~s~~p~~~~~~e~~~~~~~~~~~~   79 (472)
T KOG0634|consen    6 KDYSHHLSKESASRKLSPLRALGDIK-----SASPISIISLAGGLPNPD-YFPIRSDSIKPQGSWKKENGKKLNNVTFAF   79 (472)
T ss_pred             ccHHHHhcccccccccChHHHhhhHh-----hcCCCceEEecCCCCCCC-cccccccccccccCccccccccccceeeec
Confidence            34555666566666777777666522     223455899999977632 1222111111        0          0


Q ss_pred             HHHHhc-----CCCCCCCCCCCCHHHHHHHHHHHhhhC-CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc
Q 022213           69 VDAVRS-----GKFNCYATNSGIPPARRAIADYLSRDL-PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP  142 (301)
Q Consensus        69 ~~~~~~-----~~~~~Y~~~~g~~~lr~~ia~~l~~~~-~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~  142 (301)
                      .+..+.     ....+|++..|.++|+..+.++..... ......-+|++|+|.+.+++.+++.++++||.|+++.++|.
T Consensus        80 ~~~~~~~~l~~s~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~  159 (472)
T KOG0634|consen   80 ENEASENTLPLSRALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYP  159 (472)
T ss_pred             cccCCcccchhhhhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccch
Confidence            111111     124589999999999999999654222 22334458999999999999999999999999999999999


Q ss_pred             chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC-------c-cEEEEcCC--CCCcccCCCHHHHHHHHHHHHhC
Q 022213          143 YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN-------T-AAMVIINP--GNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       143 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~-~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      +.....+..|+++++|+++   ..++++|.|++.++..       + .-|+++.|  +||||.+++.+++++|.++|+||
T Consensus       160 ~AL~s~~a~gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy  236 (472)
T KOG0634|consen  160 SALQSMEALGVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY  236 (472)
T ss_pred             HHHHhccccCceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc
Confidence            9989999999999888874   3458999999876431       1 23455555  89999999999999999999999


Q ss_pred             CCeEEEccCCcccccCC--------CC-----------CCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcc
Q 022213          213 RVMVVADEVYGHLTFGS--------IP-----------YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIF  273 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~--------~~-----------~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~  273 (301)
                      +++||+||.|..+.|+.        .+           .+++.+.+.++|||...||||. -+||+|+||+.+++.    
T Consensus       237 DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKi-iaPGlRlG~it~~~~----  311 (472)
T KOG0634|consen  237 DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKI-IAPGLRLGWITGNSL----  311 (472)
T ss_pred             CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhh-hcCcceeEEeecCHH----
Confidence            99999999999999872        11           2334455667899999999999 689999999998653    


Q ss_pred             cchhHHHHHHhhhcc-cCCCcccccccC
Q 022213          274 QKSGIIDSIKDCLSI-YSDIPTFIQVCE  300 (301)
Q Consensus       274 ~~~~~~~~~~~~~~~-~~~~~~~~q~~~  300 (301)
                          ++++.-+..++ ..+++.++|.++
T Consensus       312 ----~l~ril~~ae~~t~~pSg~sq~iv  335 (472)
T KOG0634|consen  312 ----FLKRILDLAEVATSGPSGFSQGIV  335 (472)
T ss_pred             ----HHHHHhhhcceeecCcccccHHHH
Confidence                55666555543 446788888654

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=8.3e-30  Score=219.22  Aligned_cols=276  Identities=24%  Similarity=0.374  Sum_probs=219.1

Q ss_pred             CCcccHHHHHHHHHhhcccCC---CCCeeeccCCCCCCCCCC---------------------CChHHHHHHHHHHHhc-
Q 022213           20 APAVTVKTSLASIIDSVNKND---PRPVVPLGYGDPTAFPCF---------------------RTAVEAEDAIVDAVRS-   74 (301)
Q Consensus        20 ~~~~~i~~~~~~~~~~~~~~~---~~~~i~l~~g~p~~~p~~---------------------~~~~~~~~~~~~~~~~-   74 (301)
                      +-.-+|--.+.++.+++.+..   =..+|+-++|+|....+-                     ..|..+++...+.+.. 
T Consensus        23 AVRG~i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lLd~~~fp~Dai~RA~~~L~~~  102 (475)
T KOG0258|consen   23 AVRGPIVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELLDSPEFPTDAIKRAKRILNDC  102 (475)
T ss_pred             hhccchhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhhcCCCCCCHHHHHHHHHHHHhc
Confidence            333344444445555554322   234899999998642111                     1223344444445543 


Q ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHhcC
Q 022213           75 -GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQRKQ  152 (301)
Q Consensus        75 -~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g  152 (301)
                       +.+..|..++|++-+|+.+|+|+.++.|...++++|++|+|++.|+..++..++ .+.|.|++|-|.|+-|...+..+|
T Consensus       103 gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~  182 (475)
T KOG0258|consen  103 GGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLG  182 (475)
T ss_pred             CCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhC
Confidence             357789999999999999999999999988999999999999999999999987 478999999999999999999999


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhccc-----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADK-----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF  227 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~  227 (301)
                      ...+.+.++.+.+|.+|.++|++.+++     +++++++.||.||||.+++++.+++|+++|.+++++++.||+|.+.+|
T Consensus       183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy  262 (475)
T KOG0258|consen  183 GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVY  262 (475)
T ss_pred             CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhcc
Confidence            999999999999999999999987754     678999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCcccc----C---C-CCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccc
Q 022213          228 GS-IPYTPMGLF----G---S-IVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ  297 (301)
Q Consensus       228 ~~-~~~~~~~~~----~---~-~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  297 (301)
                      .. ..|+++...    .   . ...++.++|.||.+.. .|.|-||+-+-+..     ++..+.+.+......|++...|
T Consensus       263 ~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~-----prv~~qi~Kl~si~lc~~V~GQ  337 (475)
T KOG0258|consen  263 TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRD-----PRVKQQIKKLASIKLCPQVSGQ  337 (475)
T ss_pred             CCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCC-----hhHHHHHHHHHhhhhcCCccch
Confidence            75 367665532    1   1 2236999999999766 89999999775543     5677777777777778888888


Q ss_pred             ccC
Q 022213          298 VCE  300 (301)
Q Consensus       298 ~~~  300 (301)
                      ..+
T Consensus       338 ~~v  340 (475)
T KOG0258|consen  338 KLV  340 (475)
T ss_pred             hhh
Confidence            654

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.96  E-value=5.3e-28  Score=217.18  Aligned_cols=244  Identities=31%  Similarity=0.531  Sum_probs=190.2

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHH
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVIL  124 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~  124 (301)
                      |+|+.|++.    +..++.+.+++.+.-.......|.+..|..++++.+++++...++.....+++++++|+++++..++
T Consensus         1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~   76 (350)
T cd00609           1 IDLSIGEPD----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL   76 (350)
T ss_pred             CCCCCCCCC----CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence            578889863    3334444444433222223457888889999999999999887665566889999999999999999


Q ss_pred             HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213          125 SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE  204 (301)
Q Consensus       125 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  204 (301)
                      .++.++||+|+++.++|.++...++..|.+++.++.........+.+.++...+++++++++++|+||||.+++.+++++
T Consensus        77 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~  156 (350)
T cd00609          77 RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE  156 (350)
T ss_pred             HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence            99999999999999999999999999999999999865544333336666666778899999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |+++|+++|+++|+|++|+.+.+.+.....+...+..+.+++++|+||.++.+|.|+||++++++       ++.+.++.
T Consensus       157 l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-------~~~~~~~~  229 (350)
T cd00609         157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-------ELLERLKK  229 (350)
T ss_pred             HHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-------HHHHHHHH
Confidence            99999999999999999998877654332122233445679999999999889999999998542       47777776


Q ss_pred             hhcc-cCCCccccccc
Q 022213          285 CLSI-YSDIPTFIQVC  299 (301)
Q Consensus       285 ~~~~-~~~~~~~~q~~  299 (301)
                      .... ..+++...|.+
T Consensus       230 ~~~~~~~~~~~~~~~~  245 (350)
T cd00609         230 LLPYTTSGPSTLSQAA  245 (350)
T ss_pred             HHHhcccCCChHHHHH
Confidence            6543 34566666654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.96  E-value=1.9e-28  Score=226.73  Aligned_cols=246  Identities=16%  Similarity=0.134  Sum_probs=185.3

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChH---HHHHHHHHHHhcCCCCCCCCCCCCHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAV---EAEDAIVDAVRSGKFNCYATNSGIPPAR   90 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~---~~~~~~~~~~~~~~~~~Y~~~~g~~~lr   90 (301)
                      +-+.+..+++.+..+.+...+ + ++.+.++|+|++|+|.  ++|++|.   .+.+++.+++..+. ..|++..|..+||
T Consensus        10 ~~r~~~v~~~~~~~~~~~~~~-l-~~~g~~~~~L~~g~p~--~D~~tds~t~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lr   84 (460)
T PRK13238         10 PFRIKMVEPIRLTTREERERA-L-AEAGYNPFLLKSEDVF--IDLLTDSGTGAMSDRQWAAMMRGD-EAYAGSRSYYRLE   84 (460)
T ss_pred             ceeeceeccccccCHHHHHHH-H-HHcCCCEEeCCCCCCC--CCCCCCCCchhhhHHHHHHHHhCC-cccCCCCCHHHHH
Confidence            445556666666666554333 2 2358899999999984  3566655   57777777776544 3799999999999


Q ss_pred             HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC------C
Q 022213           91 RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE------R  164 (301)
Q Consensus        91 ~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~------~  164 (301)
                      +++++++.        .+++++|+|+++|+..++.++++||| |++++|.|..|...+...|.+++.+++...      +
T Consensus        85 eaia~~~~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~  155 (460)
T PRK13238         85 DAVKDIFG--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRH  155 (460)
T ss_pred             HHHHHHhC--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccc
Confidence            99999993        35799999999999999999999999 999999999999889999999999998542      3


Q ss_pred             CCC--CCHHHHHhhccc----CccEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcc--cccCCC-----
Q 022213          165 NWE--VDLDAVEALADK----NTAAMVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGH--LTFGSI-----  230 (301)
Q Consensus       165 ~~~--~~~~~l~~~~~~----~~~~v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~--~~~~~~-----  230 (301)
                      .|.  +|+++|++.+++    +++++++++|+|||| .+++.+++++|.++|++||+++|+|+++..  ..|...     
T Consensus       156 ~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~  235 (460)
T PRK13238        156 PFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGY  235 (460)
T ss_pred             cccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccc
Confidence            454  999999999874    688999999999997 999999999999999999999999997642  334221     


Q ss_pred             CCCCccccCCCCCEEEEecCcccCCCCccee-----E-EEEeeCCCCcccchhHHHHHHhh
Q 022213          231 PYTPMGLFGSIVPVITLGSISKRWLVPGWRF-----G-WLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-----G-~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ...++..+     ++.++|++|.+.++|+|+     | |+++++       +++.++++..
T Consensus       236 ~~~si~~i-----~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d-------~~l~~~~~~~  284 (460)
T PRK13238        236 KDKSIKEI-----AREMFSYADGLTMSAKKDAMVNIGGLLCFRD-------EDLFTECRTL  284 (460)
T ss_pred             cCCCHHHH-----hhhhcccCcEEEEecccCCCCcceeEEEcCh-------HHHHHHhhhc
Confidence            12222211     133456666666666665     3 455432       3577777766

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=192.78  Aligned_cols=259  Identities=24%  Similarity=0.389  Sum_probs=189.2

Q ss_pred             hcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHH
Q 022213           18 KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----KFNCYATNSGIPPARRAI   93 (301)
Q Consensus        18 ~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~i   93 (301)
                      |...-++|..+++++.+.+.   .++.|.|+.|+|...|.+  .....+...+.+.++    .+.+|..++|...|.+++
T Consensus         9 kft~~sGi~~lMdDl~d~Lr---t~g~imLggGNPa~iPem--~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~al   83 (417)
T COG3977           9 KFTRHSGITQLMDDLNDGLR---TPGAIMLGGGNPARIPEM--DDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDAL   83 (417)
T ss_pred             HhhhhhhHHHHHHHHHhhcc---CCCceeeCCCCcccChhH--HHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHH
Confidence            45567889999999988774   456999999999765432  222333444444443    367899999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC---CC--CEEEEc-CCCCcchHHHHHhcCceEEE---eecCCCC
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR---PG--ANVLLP-RPGWPYYEGIAQRKQVEVRH---FDLLPER  164 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---~g--d~Vl~~-~p~~~~~~~~~~~~g~~~~~---~~~~~~~  164 (301)
                      +.++++.+|.++.++||.+|+|++.+.+.++..+..   .|  .+|++| .|.|.+|......-.+=+..   +++.+..
T Consensus        84 a~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g  163 (417)
T COG3977          84 AKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAG  163 (417)
T ss_pred             HHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCccccccc
Confidence            999999999999999999999999999999988853   24  357776 89999885433221111111   1222333


Q ss_pred             C--CCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC---
Q 022213          165 N--WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG---  239 (301)
Q Consensus       165 ~--~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~---  239 (301)
                      .  +.+|.+.+.  +.+.+-++|++-|.||||.+++.+++.+|..++++||+.+|+|.+|+.      +|+.+---+   
T Consensus       164 ~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~------PFP~iifsd~~~  235 (417)
T COG3977         164 QFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV------PFPGIIFSDATP  235 (417)
T ss_pred             ceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC------CCCceecccccc
Confidence            3  346666655  346788899999999999999999999999999999999999999985      333322111   


Q ss_pred             -CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          240 -SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       240 -~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                       =.+|+|.|.|+||. |+||.|+|.+++.        +++++.+..+.. .+..+....|.
T Consensus       236 ~w~~NiilC~SLSK~-GLPG~R~GIiIan--------e~viqaitnmn~iisLap~~~G~A  287 (417)
T COG3977         236 LWNENIILCMSLSKL-GLPGSRCGIIIAN--------EKVIQAITNMNGIISLAPGRMGPA  287 (417)
T ss_pred             cCCCCEEEEeehhhc-CCCCcceeEEEcc--------HHHHHHHHhccceeeecCCCccHH
Confidence             13579999999998 9999999999973        458887776644 23344444443

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=5e-26  Score=196.84  Aligned_cols=277  Identities=22%  Similarity=0.231  Sum_probs=201.6

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+...++++|..+.+...++    ..++.|||++|... .....+.-+.|.++-++.........|-+..|++++++++
T Consensus         3 ~~i~~~p~DpIlgL~e~f~~D----~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~   78 (396)
T COG1448           3 EKIEAAPADPILGLKEAFKAD----PRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAV   78 (396)
T ss_pred             cccccCCCCchhHHHHHHhcC----CCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHH
Confidence            345678999999999866543    46889999999331 1123455567777776666666677899999999999999


Q ss_pred             HHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCC
Q 022213           94 ADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVD  169 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  169 (301)
                      ++++......-+..++|  +=|.|+|.||..+...+..  +..+|.+++|+|.++..++...|.++..++.-...+..+|
T Consensus        79 ~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~d  158 (396)
T COG1448          79 QKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLD  158 (396)
T ss_pred             HHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccccccc
Confidence            99994321112445555  5599999999999988864  5677999999999999999999999999998666666799


Q ss_pred             HHHHHhhccc--CccEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCC-CCCE
Q 022213          170 LDAVEALADK--NTAAMVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGS-IVPV  244 (301)
Q Consensus       170 ~~~l~~~~~~--~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~-~~~v  244 (301)
                      .+.+...+++  ...+|++. .+|||||..++.++|++|+++.++++++.+.|-+|..|.-+-+ ....+..+.. ...+
T Consensus       159 f~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~  238 (396)
T COG1448         159 FDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPEL  238 (396)
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcE
Confidence            9998887764  33444443 4599999999999999999999999999999999999765421 1112222222 2237


Q ss_pred             EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCcccc
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFI  296 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  296 (301)
                      +++.||||+|++.|.|+|.+.+-.++... -.++.+.++.. +...+++|...
T Consensus       239 lva~S~SKnfgLYgERVGa~~vva~~~~~-a~~v~sqlk~~iR~~ySnPP~~G  290 (396)
T COG1448         239 LVASSFSKNFGLYGERVGALSVVAEDAEE-ADRVLSQLKAIIRTNYSNPPAHG  290 (396)
T ss_pred             EEEehhhhhhhhhhhccceeEEEeCCHHH-HHHHHHHHHHHHHhccCCCchhh
Confidence            99999999999999999996554432111 12233444444 33455555544

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.93  E-value=1.5e-24  Score=198.63  Aligned_cols=214  Identities=16%  Similarity=0.172  Sum_probs=162.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC---CC----HHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS---GI----PPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~----~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      ++.++|+|+.|+|   +.++.++.+.+++.++++.... .|+.+.   |.    .+|++++|+++.        .+++++
T Consensus        36 ~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~~~~~-~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii  103 (393)
T TIGR01822        36 DGREVLNFCANNY---LGLSSHPDLIQAAKDALDEHGF-GMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTIL  103 (393)
T ss_pred             CCceEEEeeCCCc---cccCCCHHHHHHHHHHHHHhCC-CCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEE
Confidence            4788999999985   4677788999999888875222 566555   65    788999999882        357888


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEE
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVI  186 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l  186 (301)
                      ++|+++|+..++.+++++||.|+++.|.|+++...++..+.+...++       ..|++.+++.+++      +++++++
T Consensus       104 ~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~  176 (393)
T TIGR01822       104 YASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIAT  176 (393)
T ss_pred             ECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEE
Confidence            89999999999999999999999999999999888877776664432       2788999887764      5677888


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEE
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      .+++||||.+.+   +++|+++|++||+++|+|++|+...++..........+. ....++++|+||++  +|+|+||++
T Consensus       177 ~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~  251 (393)
T TIGR01822       177 DGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGFTT  251 (393)
T ss_pred             eCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEE
Confidence            889999999988   889999999999999999999643332111111111111 12459999999985  478999998


Q ss_pred             eeCCCCcccchhHHHHHHhh
Q 022213          266 TNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ++.        ++++.++..
T Consensus       252 ~~~--------~~~~~l~~~  263 (393)
T TIGR01822       252 ARK--------EVVELLRQR  263 (393)
T ss_pred             eCH--------HHHHHHHHh
Confidence            743        477777654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.93  E-value=5.6e-25  Score=201.14  Aligned_cols=222  Identities=18%  Similarity=0.173  Sum_probs=173.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCCh---HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTA---VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~---~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+.+++.|..+++-.  +|..+   ..+.++...++..+.. .|++..|..+|++++++++.        .+++++|+|+
T Consensus         9 ~g~n~~~l~~~~v~i--Dlltds~t~ams~~~~~a~~~gd~-~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~G   77 (431)
T cd00617           9 AGYNVFLLRSEDVYI--DLLTDSGTGAMSDYQWAAMMLGDE-AYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQG   77 (431)
T ss_pred             cCCCEEeCCCCCcCC--CCCCCCCcHHHHHHHHHHHHhCCC-ccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCH
Confidence            488999999999821  34444   3555555666655543 59999999999999999983        3689999999


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC--------CCCCHHHHHhhcccC----ccEE
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN--------WEVDLDAVEALADKN----TAAM  184 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~----~~~v  184 (301)
                      ++|+..++.++++|||.| +++|.|..+...+...|.+++.+++.+..+        +.+|+++|++.++++    +++|
T Consensus        78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I  156 (431)
T cd00617          78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI  156 (431)
T ss_pred             HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence            999999999999999987 689999999889999999999999875432        349999999999765    6788


Q ss_pred             EEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCcc--ccc-----CCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          185 VIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGH--LTF-----GSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       185 ~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~--~~~-----~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                      ++++|+||+ |..++.+++++|.++|++||++||+|++...  ..|     ++....++..     -++.++|+||.+.+
T Consensus       157 ~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e-----i~~e~~s~sd~~~m  231 (431)
T cd00617         157 VLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE-----IAREMFSYADGCTM  231 (431)
T ss_pred             EEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH-----HHHHhhccCCEEEE
Confidence            999999998 9999999999999999999999999999542  122     1112222221     12456678888878


Q ss_pred             Ccce------eEEEEeeCCCCcccchhHHHHHHhh
Q 022213          257 PGWR------FGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       257 ~G~r------vG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      .|+|      .||+++++       ++++++++.+
T Consensus       232 S~~K~~~~~~GG~i~~~d-------~~l~~~~~~~  259 (431)
T cd00617         232 SAKKDGLVNIGGFLALRD-------DELYEEARQR  259 (431)
T ss_pred             EeecCCCCccceEEEeCc-------HHHHHHHHHh
Confidence            8877      56888754       2477777754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.92  E-value=6e-24  Score=194.70  Aligned_cols=220  Identities=15%  Similarity=0.114  Sum_probs=163.1

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+++++|+|+.|++   |.++.++.+.+++.+.++....  ..|....|..++++++++++.+.++.   +++|++|+| 
T Consensus        39 ~~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-  111 (397)
T PRK06939         39 ADGKEVINFCANNY---LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-  111 (397)
T ss_pred             cCCCeEEEeeccCc---cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-
Confidence            35788999999984   4577788899999888864322  12233468888999999988887662   367888887 


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPG  190 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~  190 (301)
                      ++++..++++++++||.|++++|+|+++...+...+.+++.++.       .|++.+++.+++      ++++++..+.+
T Consensus       112 ~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~  184 (397)
T PRK06939        112 FDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVF  184 (397)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCc
Confidence            78999999999999999999999999998888888988877653       477888877653      55666666678


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |++|...+   +++|+++|++|++++|+||+|....+...........+. ....++++|+||+++  |.|+||++++. 
T Consensus       185 ~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~~-  258 (397)
T PRK06939        185 SMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGRK-  258 (397)
T ss_pred             CCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeCH-
Confidence            99998766   889999999999999999999642222111111111111 124599999999973  56999999753 


Q ss_pred             CCcccchhHHHHHHhh
Q 022213          270 NGIFQKSGIIDSIKDC  285 (301)
Q Consensus       270 ~~~~~~~~~~~~~~~~  285 (301)
                             ++++.++..
T Consensus       259 -------~~~~~l~~~  267 (397)
T PRK06939        259 -------EVIDWLRQR  267 (397)
T ss_pred             -------HHHHHHHHh
Confidence                   477777654

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.92  E-value=1.8e-23  Score=190.89  Aligned_cols=219  Identities=18%  Similarity=0.204  Sum_probs=165.8

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+++++|+|+.|++   +.+++++.+.+++.++++..  ....|....|..++++++++++.+..+.   ++.+++++| 
T Consensus        30 ~~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG-  102 (385)
T TIGR01825        30 VNGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSG-  102 (385)
T ss_pred             ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcH-
Confidence            35789999999874   35777788889988887642  2345777789999999999999886662   355777776 


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCCCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINPGNP  192 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~np  192 (301)
                      ++++..++.+++++||.|+++.|+|..+...+...|.++..++       .+|++++++.+++    +++++++++++||
T Consensus       103 ~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~  175 (385)
T TIGR01825       103 FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSM  175 (385)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcC
Confidence            6677789999999999999999999998777777788776553       2678888876643    5677777888999


Q ss_pred             cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCC
Q 022213          193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNG  271 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~  271 (301)
                      ||.+.+   +++|.++|++||+++|+||+|..+.++.........++ ..+.+|++.||||.++++|   ||++++.   
T Consensus       176 tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~---  246 (385)
T TIGR01825       176 DGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHK---  246 (385)
T ss_pred             CCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCH---
Confidence            999998   78899999999999999999987665421111111111 1345799999999998776   9988632   


Q ss_pred             cccchhHHHHHHhh
Q 022213          272 IFQKSGIIDSIKDC  285 (301)
Q Consensus       272 ~~~~~~~~~~~~~~  285 (301)
                           ++++.+...
T Consensus       247 -----~~~~~~~~~  255 (385)
T TIGR01825       247 -----ELIEYLKNR  255 (385)
T ss_pred             -----HHHHHHHHh
Confidence                 466776554

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.92  E-value=1.7e-23  Score=192.43  Aligned_cols=192  Identities=16%  Similarity=0.198  Sum_probs=146.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g  152 (301)
                      +.+|+.+ ....|++.+|++.        ..+++++++|+++|+..++.+++++||+|+++.|.|..+...+    ...|
T Consensus        77 y~R~~~P-t~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G  147 (427)
T PRK07049         77 YSRFNHP-NSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG  147 (427)
T ss_pred             ccCCCCc-CHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence            3456654 4689999999997        3457999999999999999999999999999999999986653    4578


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcc-----cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh---CCCeEEEccCCcc
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALAD-----KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK---LRVMVVADEVYGH  224 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~---~~~~ii~D~~y~~  224 (301)
                      ++++.++.    +  .|++.+++.+.     ++++++++++|+||||.+++.+++.+|++.|+.   +++++|+|++|..
T Consensus       148 i~~v~~~~----~--~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~  221 (427)
T PRK07049        148 VGAVGFAD----G--LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG  221 (427)
T ss_pred             cEEEEEeC----C--CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence            88666642    1  46677766553     468899999999999999999999988888653   6899999999876


Q ss_pred             cccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          225 LTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ..+.    .++ .+   +..|++.|+||.++ .+|+|+||++++.        +++++++.... ...+.+++.|.+
T Consensus       222 ~~~~----~pl-~~---g~divv~S~SK~~gG~~glr~G~vv~~~--------~l~~~l~~~~~~~g~~ls~~~a~l  282 (427)
T PRK07049        222 PVFQ----KPL-EH---GADLSVYSLTKYVGGHSDLVAGAVLGRK--------ALIRQVRALRSAIGTQLDPHSCWM  282 (427)
T ss_pred             cccC----Ccc-cc---CCCEEEEcCceeecCCCCcEEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHH
Confidence            4332    122 11   23488999999999 5999999998642        47777776644 344566666654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.91  E-value=4.9e-23  Score=186.07  Aligned_cols=215  Identities=16%  Similarity=0.152  Sum_probs=157.8

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      .+++++|+|+.|+|-   .++.++.+.+++.++++...  ...|....|    ..++++++++++.       .++.|++
T Consensus        13 ~~g~~~id~~~~~~~---g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~   82 (360)
T TIGR00858        13 RDGRRLLNFSSNDYL---GLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLF   82 (360)
T ss_pred             ECCceEEecccCCcc---cCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEE
Confidence            358899999999751   35566889999998886411  112222223    3457777777762       2467777


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcC
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIIN  188 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~  188 (301)
                      ++|+ +++..++++++++||+|+++.|+|..+...++..|.+++.++.       .|++.+++.+++    +++++++.+
T Consensus        83 ~~G~-~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~  154 (360)
T TIGR00858        83 SSGY-LANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDG  154 (360)
T ss_pred             CchH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeC
Confidence            7775 5555677888899999999999999998888889998877653       578888888754    356777888


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||||...+   +++|.++|+++++++|+||+|..+.++....  .....+..++++|+++||||.|+++|   ||+++
T Consensus       155 ~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~  228 (360)
T TIGR00858       155 VFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAG  228 (360)
T ss_pred             CccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEc
Confidence            9999999988   8888889999999999999998766543211  12222333467899999999998877   99987


Q ss_pred             eCCCCcccchhHHHHHHhh
Q 022213          267 NDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~  285 (301)
                      +.        ++++.++..
T Consensus       229 ~~--------~~~~~~~~~  239 (360)
T TIGR00858       229 SQ--------ALIDYLINR  239 (360)
T ss_pred             CH--------HHHHHHHHh
Confidence            43        466666543

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=6.2e-23  Score=185.84  Aligned_cols=202  Identities=17%  Similarity=0.192  Sum_probs=152.7

Q ss_pred             CCChHHHHHHHHHHHhcCC---C-C-CCC--CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC
Q 022213           58 FRTAVEAEDAIVDAVRSGK---F-N-CYA--TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP  130 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~---~-~-~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~  130 (301)
                      -+..+.+.+++.+......   . . ...  ...-+.++++.+++++      ++  +++++|+|+++++..++.+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~--~~i~~~~g~t~al~~~l~~~~~~   82 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL------GM--DEARVTPGAREGKFAVMHSLCEK   82 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc------CC--ceEEEeCCHHHHHHHHHHHhcCC
Confidence            3456777888777653211   0 0 011  1123568888888887      23  78999999999999999999999


Q ss_pred             CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cCccEEEEcCCCCCcccCCCHHHHH
Q 022213          131 GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KNTAAMVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       131 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p~nptG~~~~~~~l~  203 (301)
                      ||+|+++.++|.+....++..|++++.++.+...++.+|++.+++.++       ++++++++++|+||||...+   ++
T Consensus        83 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~  159 (361)
T cd06452          83 GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AK  159 (361)
T ss_pred             CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HH
Confidence            999999999888776778889999999998665556799999998875       26789999999999999877   88


Q ss_pred             HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +|+++|+++|+++|+|++|.....    +.....++   ..++++|+||+++. +.|+||++++.        +++++++
T Consensus       160 ~i~~~~~~~~~~vivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~l~~-~~~~G~l~~~~--------~~~~~l~  223 (361)
T cd06452         160 KIAKVCHEYGVPLLLNGAYTVGRM----PVSGKELG---ADFIVGSGHKSMAA-SAPIGVLATTE--------EWADIVF  223 (361)
T ss_pred             HHHHHHHHcCCeEEEECCcccCCc----CCCHHHcC---CCEEEecCCccccC-CCCeEEEEECH--------HHHHHHh
Confidence            888999999999999999985221    11222222   23899999999874 45999999853        3666665


Q ss_pred             hhh
Q 022213          284 DCL  286 (301)
Q Consensus       284 ~~~  286 (301)
                      +..
T Consensus       224 ~~~  226 (361)
T cd06452         224 RTS  226 (361)
T ss_pred             ccc
Confidence            543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=3.9e-24  Score=175.59  Aligned_cols=201  Identities=22%  Similarity=0.356  Sum_probs=159.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ++.++.|+..+...   .|.|+.        +.  --..|+.++ ...++.+++.-      -++.+|+|+++.|+-|.|
T Consensus        40 G~~iv~ld~~e~~r---yPdP~q--------~e--fk~~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~I   99 (375)
T KOG0633|consen   40 GRDIVKLDANENPR---YPDPEQ--------ME--FKYVYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELI   99 (375)
T ss_pred             CCCceEeccccCCC---CcCHHH--------cc--cccccCCcc-cchhhhhcccC------CCCCccceEEecCcHHHH
Confidence            77899998887543   445533        21  011355432 34566555533      267899999999999999


Q ss_pred             HHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCC
Q 022213          121 EVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       121 ~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~  197 (301)
                      +.++++.|.|| ++|+...|+|.-|..-+...+++++.+|+.+  +|.++.|.+.+.++.  .+|.+|+++|+||||..+
T Consensus       100 D~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~i  177 (375)
T KOG0633|consen  100 DLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSII  177 (375)
T ss_pred             HHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCCCCCcccc
Confidence            99999999999 9999999999998877788899999999866  678999999998754  678899999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ..+.+++|.+.-.  |.++++||+|.+|...+.+..   ...+..|++++.++||+||++|+|+||-..+.
T Consensus       178 k~~di~KiLe~p~--nglVVvDEAYidFsg~~S~~~---lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~  243 (375)
T KOG0633|consen  178 KEDDILKILEMPD--NGLVVVDEAYIDFSGVESRMK---LVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPL  243 (375)
T ss_pred             cHHHHHHHHhCCC--CcEEEEeeeeEeeccccccch---HhHhCCceeehhhhhhhcCcceeEeecccccH
Confidence            9999999988432  789999999999775433333   33456788999999999999999999998754

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.91  E-value=2e-22  Score=184.85  Aligned_cols=202  Identities=16%  Similarity=0.163  Sum_probs=154.3

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCC-------CCCHHHHHHHHHHHhhhCCCCC-CCCCEEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATN-------SGIPPARRAIADYLSRDLPYKL-SADDVYV  112 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~-------~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~  112 (301)
                      .++|.|+.+.-.     +.|+.+.+++.+.+.... ...+...       ..+.++|+.+++++      +. ++++|++
T Consensus        15 ~~~iyld~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~~   83 (398)
T TIGR03392        15 DGTVYLDSAATA-----LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL------NAPDAENIVW   83 (398)
T ss_pred             CCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEE
Confidence            357899988632     456788898888775321 1112211       12456888999988      34 4689999


Q ss_pred             cCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          113 TLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       113 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      |+|+|++++.++.++    .++||+|++++|.|++    +...++..|++++.++++.  ++.+|++.+++.++++++++
T Consensus        84 t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv  161 (398)
T TIGR03392        84 TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRIL  161 (398)
T ss_pred             eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCceEE
Confidence            999999999999998    4789999999999875    4456678899999998753  35589999999998889999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++++|+||||.+++   +++|+++|+++|+++++|++|+...+    ...+..++.   .+++.|++|.++.+|  +||+
T Consensus       162 ~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~~---d~~~~s~~K~~gp~G--~G~l  229 (398)
T TIGR03392       162 ALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALDI---DFYAFSGHKLYGPTG--IGVL  229 (398)
T ss_pred             EEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcCC---CEEEEecccccCCCc--eEEE
Confidence            99999999999999   78899999999999999999975332    122222222   277889999877666  8999


Q ss_pred             EeeC
Q 022213          265 VTND  268 (301)
Q Consensus       265 ~~~~  268 (301)
                      +++.
T Consensus       230 ~~~~  233 (398)
T TIGR03392       230 YGKT  233 (398)
T ss_pred             EEcH
Confidence            8753

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02242 methionine gamma-lyase

Probab=99.90  E-value=7.5e-23  Score=187.58  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=140.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH-----HhcCceEEEee
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA-----QRKQVEVRHFD  159 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-----~~~g~~~~~~~  159 (301)
                      ...+|++.+|+++        ..+.+++++|+++|+..++.+++++||+|+++.|.|..+...+     +..|+++++++
T Consensus        77 t~~~LE~~lA~l~--------g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d  148 (418)
T PLN02242         77 TVLNLGRQMAALE--------GTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD  148 (418)
T ss_pred             hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence            5678899999987        3467889999999999999999999999999999998876554     34677777665


Q ss_pred             cCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          160 LLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                      .       .|++.+++++++ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+..   .   .+
T Consensus       149 ~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~---~---~~  212 (418)
T PLN02242        149 I-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP---A---RL  212 (418)
T ss_pred             C-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH---H---Hc
Confidence            4       388999999987 4899999999999999998   8899999999999999999998765421   1   11


Q ss_pred             CCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhhc---ccCCCcccccc
Q 022213          239 GSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCLS---IYSDIPTFIQV  298 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~  298 (301)
                         +..|+++|+||.++++|.++ ||++++.        +++.+++....   ...+++...|.
T Consensus       213 ---g~divv~S~SK~l~g~g~~~gG~iv~~~--------~li~~l~~~~~~~~~~~g~~~~~~~  265 (418)
T PLN02242        213 ---GADVVVHSISKFISGGADIIAGAVCGPA--------ELVNSMMDLHHGALMLLGPTMNPKV  265 (418)
T ss_pred             ---CCcEEEEeCccccCCCCCceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCCCHHH
Confidence               23489999999999999884 8888643        46677765532   23344444444

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.90  E-value=3.4e-22  Score=179.23  Aligned_cols=206  Identities=16%  Similarity=0.157  Sum_probs=147.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLL  136 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~  136 (301)
                      +...+.+.++..+.++     .|+ +..-+.+|++.+|+|+      +.+++++++++|+++++..++.+++++||.|++
T Consensus        32 l~~~~~~~~~~~~~~~-----~~~g~~~~~~~Le~~lA~~~------g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli  100 (346)
T TIGR03576        32 LAGGFKIDEEDLELLE-----TYVGPAIFEEKVQELGREHL------GGPEEKILVFNRTSSAILATILALEPPGRKVVH  100 (346)
T ss_pred             CCCChhHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHc------CCCcceEEEECCHHHHHHHHHHHhCCCCCEEEE
Confidence            4445678888877776     342 1122345555555555      357789999999999999999999999999997


Q ss_pred             c---CCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213          137 P---RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR  213 (301)
Q Consensus       137 ~---~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~  213 (301)
                      +   .|+|..|...++..|.++...         .+++.++.  .++++++++ +++|++|.+++.+++++|+++|+++|
T Consensus       101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~  168 (346)
T TIGR03576       101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKE  168 (346)
T ss_pred             CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcC
Confidence            5   468888888888889875321         24455433  235666666 45799999999999999999999999


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCC
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDI  292 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  292 (301)
                      +++|+||+|..+..+.....+...+.  .+ +++.||||  +++|+|+||++++.        ++++.+++.... ..+.
T Consensus       169 ~~livDEAy~~~~~~~~~~~~~~~~~--~d-ivv~s~SK--alaG~r~G~v~~~~--------~li~~l~~~~~~~~~s~  235 (346)
T TIGR03576       169 AIVLVDDASGARVRRLYGQPPALDLG--AD-LVVTSTDK--LMDGPRGGLLAGRK--------ELVDKIKSVGEQFGLEA  235 (346)
T ss_pred             CEEEEECCccccccccCCCCCHHHcC--Cc-EEEeccch--hccccceEEEEeCH--------HHHHHHHHhhcCcccCc
Confidence            99999999998653211111111222  12 66779999  57999999999843        588888887542 3345


Q ss_pred             ccccccc
Q 022213          293 PTFIQVC  299 (301)
Q Consensus       293 ~~~~q~~  299 (301)
                      +++.|.+
T Consensus       236 ~~~~~~a  242 (346)
T TIGR03576       236 QAPLLAA  242 (346)
T ss_pred             cHHHHHH
Confidence            6666654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.90  E-value=6.1e-23  Score=184.05  Aligned_cols=203  Identities=15%  Similarity=0.133  Sum_probs=150.2

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP  137 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~  137 (301)
                      +++++.+.+++.+.....  ..|++.....++++.+++++      +  ++++++++|+++++..++++++++||+|+++
T Consensus         8 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~------g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~   77 (338)
T cd06502           8 TGPTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELF------G--KEAALFVPSGTAANQLALAAHTQPGGSVICH   77 (338)
T ss_pred             CCCCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHh------C--CCeEEEecCchHHHHHHHHHhcCCCCeEEEe
Confidence            567788989887755322  25766566778888888887      2  5678888888999999999999999999999


Q ss_pred             CCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEEEcCCCCCcccCCCHHHHHHHHH
Q 022213          138 RPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMVIINPGNPCGNVFTYHHLQEIAE  207 (301)
Q Consensus       138 ~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~l~~i~~  207 (301)
                      .|+|..+..   .....|++++.++..   .+.+|++.+++++++       +++++++++|+|| |.+++.+++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~  153 (338)
T cd06502          78 ETAHIYTDEAGAPEFLSGVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISA  153 (338)
T ss_pred             cCcceeeecCCcHHHHcCceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHH
Confidence            999876432   345579999888763   256999999998864       6788999999997 66779999999999


Q ss_pred             HHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       208 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +|+++|+++|+|++|.......... ++..+....+ +++.|+||+|+++|   |++++.+       ++++++++...
T Consensus       154 ~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~~~~~-------~~~~~~~~~~~  220 (338)
T cd06502         154 LAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAVVVGN-------RDFIARARRRR  220 (338)
T ss_pred             HHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceEEECC-------HHHHHHHHHHH
Confidence            9999999999999986432111111 2222222223 45779999999887   5544333       24777776553

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.90  E-value=3.1e-22  Score=182.55  Aligned_cols=217  Identities=21%  Similarity=0.197  Sum_probs=152.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +++++|+|+.|++   +.+.+++.+.+++.+++....  ...|....|...+++.+++.+.+.++    .++.+++++++
T Consensus        37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~----~~~~i~~~~g~  109 (385)
T PRK05958         37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG----AERALLFSSGY  109 (385)
T ss_pred             CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECcHH
Confidence            6899999999974   235567889999998886411  11233333444444444444444333    23455555666


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcc
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN---TAAMVIINPGNPCG  194 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG  194 (301)
                      +++..+++.++++||.|+++.|+|..+...++..|.+++.++.       .|++.+++.++..   +.++++.+++|++|
T Consensus       110 ~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G  182 (385)
T PRK05958        110 AANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDG  182 (385)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCC
Confidence            7777788888999999999999999998888888988887764       4788888887642   44455567899999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC--CCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG--SIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI  272 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~--~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~  272 (301)
                      ...+   +++|+++|++||+++|+||+|....++  +........+....++|++.|+||+++.+|   ||++++.    
T Consensus       183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~~----  252 (385)
T PRK05958        183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGSE----  252 (385)
T ss_pred             CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcCH----
Confidence            9888   888999999999999999999865543  211211112333457899999999998877   8987642    


Q ss_pred             ccchhHHHHHHh
Q 022213          273 FQKSGIIDSIKD  284 (301)
Q Consensus       273 ~~~~~~~~~~~~  284 (301)
                          ++++.++.
T Consensus       253 ----~~~~~~~~  260 (385)
T PRK05958        253 ----TLIDYLIN  260 (385)
T ss_pred             ----HHHHHHHH
Confidence                36666543

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.90  E-value=1.5e-22  Score=185.12  Aligned_cols=169  Identities=20%  Similarity=0.231  Sum_probs=137.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEE
Q 022213           82 TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRH  157 (301)
Q Consensus        82 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~  157 (301)
                      +..+..+|++++|+++.        .+++++++|++.|+..++.+++++||+|+++.|.|..+..    .++..|+++++
T Consensus        62 ~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~  133 (400)
T PRK06234         62 GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTF  133 (400)
T ss_pred             CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEE
Confidence            33578999999999982        3478999999999999999999999999999999986543    34668999988


Q ss_pred             eecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCc
Q 022213          158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPM  235 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~  235 (301)
                      ++.       .|++++++.++++++++++++|+||||.+.+   +++|+++|+++  ++++|+|++|....+..    ++
T Consensus       134 vd~-------~d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~----~l  199 (400)
T PRK06234        134 VDT-------SNLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR----PL  199 (400)
T ss_pred             ECC-------CCHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC----ch
Confidence            875       3789999999888999999999999999999   88888888886  99999999998765431    12


Q ss_pred             cccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHh
Q 022213          236 GLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       236 ~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      . ++   ..|++.|+||.++++|.|+ ||++++.        +++++++.
T Consensus       200 ~-~g---~Divv~S~sK~l~g~g~~~gG~v~~~~--------~~~~~l~~  237 (400)
T PRK06234        200 Q-LG---ADVVVHSATKYLNGHGDVIAGFVVGKE--------EFINQVKL  237 (400)
T ss_pred             h-hC---CcEEEeeccccccCCCCceeEEEEecH--------HHHHHHHH
Confidence            1 11   2399999999999999876 9988743        36666654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.90  E-value=6.8e-22  Score=181.51  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=154.2

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---------CCCCHHHHHHHHHHHhhhCCCCC-CCCCEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---------NSGIPPARRAIADYLSRDLPYKL-SADDVY  111 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---------~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~  111 (301)
                      .+.+.|+.+.-.     +.|..+.+++.+.+..... +...         ...+.++|+.+++++      +. ++++|+
T Consensus        18 ~~~~yld~a~~~-----~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~   85 (401)
T PRK10874         18 DAGVYLDSAATA-----LKPQAVIEATQQFYSLSAG-NVHRSQFAAAQRLTARYEAAREQVAQLL------NAPDAKNIV   85 (401)
T ss_pred             CceEEEeCCccc-----CCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHHHHHHHHc------CCCCCCEEE
Confidence            357889888632     4567888988887763210 1100         112557888888887      34 678999


Q ss_pred             EcCCHHHHHHHHHHHhc----CCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          112 VTLGCKQAVEVILSVLA----RPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      +|+|++++++.+++++.    ++||+|+++++.|++    +...++..|++++.++...  ++.+|++++++.+++++++
T Consensus        86 ~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~l  163 (401)
T PRK10874         86 WTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRI  163 (401)
T ss_pred             EECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEE
Confidence            99999999999999983    689999999999865    4556678899999998743  4568999999999889999


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +++++|+||||.+++   +++|+++|+++|+++|+|++|+...+    +..+..++   -.+++.|++|.|+.+|  +||
T Consensus       164 v~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~~gp~G--~G~  231 (401)
T PRK10874        164 LALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF----PADVQALD---IDFYAFSGHKLYGPTG--IGV  231 (401)
T ss_pred             EEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc----cCCchhcC---CCEEEEecccccCCCc--cEE
Confidence            999999999999999   78888999999999999999975332    12222222   2378899999887677  688


Q ss_pred             EEeeC
Q 022213          264 LVTND  268 (301)
Q Consensus       264 ~~~~~  268 (301)
                      ++++.
T Consensus       232 l~~~~  236 (401)
T PRK10874        232 LYGKS  236 (401)
T ss_pred             EEEch
Confidence            88743

>PLN02822 serine palmitoyltransferase

Probab=99.90  E-value=1.5e-22  Score=188.94  Aligned_cols=222  Identities=14%  Similarity=0.143  Sum_probs=161.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +++++|||+.+++   +.+..++.+.+++.++++....      ..|++..++.+|++++++++.       .++.|+++
T Consensus       107 ~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s  176 (481)
T PLN02822        107 NGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYS  176 (481)
T ss_pred             CCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEEC
Confidence            4788999999985   3566789999999999975211      135565668899999999983       34678888


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc--ccCc-cEEEEcCCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA--DKNT-AAMVIINPG  190 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~-~~v~l~~p~  190 (301)
                      +|.+ ++..++.+++++||.|++....|..+...+...+.+++.++.+..+.+..++++++...  .+++ +++++..++
T Consensus       177 ~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~  255 (481)
T PLN02822        177 YGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY  255 (481)
T ss_pred             CHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence            8877 67889999999999999988877777677778888888887643222222233332221  1234 577777889


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--CCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |++|.+.+   +++|+++|++||+++|+||+|+...++.........++  .....|++.||||+++++|   ||++++.
T Consensus       256 ~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~  329 (481)
T PLN02822        256 QNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSA  329 (481)
T ss_pred             CCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCH
Confidence            99999999   88899999999999999999997776522111111111  1234589999999999999   9998743


Q ss_pred             CCCcccchhHHHHHHhhh
Q 022213          269 PNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~  286 (301)
                              ++++.++...
T Consensus       330 --------~ii~~~~~~~  339 (481)
T PLN02822        330 --------RVVDHQRLSS  339 (481)
T ss_pred             --------HHHHHHHhcC
Confidence                    4777776543

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.90  E-value=8.2e-22  Score=181.24  Aligned_cols=203  Identities=18%  Similarity=0.237  Sum_probs=153.0

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC----CCCC----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN----CYAT----NSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~----~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      .++|.|+.+.-     -++|+.+.+++.+.+......    .|..    ..-..++|+.+++++..     .++++|++|
T Consensus        22 ~~~iYld~a~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~t   91 (406)
T PRK09295         22 LPLAYLDSAAS-----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVFV   91 (406)
T ss_pred             CceEEEeCccc-----ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEEe
Confidence            36789988863     245678889888877531110    1100    01145788888888732     256899999


Q ss_pred             CCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEE
Q 022213          114 LGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV  185 (301)
Q Consensus       114 ~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  185 (301)
                      +|+++++..+++++    +++||+|+++++.|++    +...++..|++++.++++.  ++.+|++.+++++++++++++
T Consensus        92 ~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~  169 (406)
T PRK09295         92 RGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERTRLLA  169 (406)
T ss_pred             CCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEE
Confidence            99999999999874    5789999999988864    3455667899999998753  345899999999988899999


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +++|+||||.+++   +++|+++|+++|+++++|++|+...    .+..+..++.   -+++.|++|.+|.+|  +||++
T Consensus       170 l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~  237 (406)
T PRK09295        170 ITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMH----HPVDVQALDC---DFYVFSGHKLYGPTG--IGILY  237 (406)
T ss_pred             EecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCc----cccCchhcCC---CEEEeehhhccCCCC--cEEEE
Confidence            9999999999999   7888999999999999999997632    2223333322   288899999877666  89998


Q ss_pred             eeC
Q 022213          266 TND  268 (301)
Q Consensus       266 ~~~  268 (301)
                      +++
T Consensus       238 ~~~  240 (406)
T PRK09295        238 VKE  240 (406)
T ss_pred             Ech
Confidence            854

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.89  E-value=8e-22  Score=179.08  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=138.2

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN  165 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  165 (301)
                      ...+++.+|+|+        ..+.+++++|+++++..++.+++++||.|+++.+.|.+....++..|++++.++.+.+.+
T Consensus        53 ~~~~~e~lA~~~--------g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~  124 (370)
T TIGR02539        53 IHDFLEDLAEFL--------GMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPE  124 (370)
T ss_pred             HHHHHHHHHHHh--------CCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCccc
Confidence            357788888887        234677899999999999999999999999998887666577788999999999765556


Q ss_pred             CCCCHHHHHhhccc-------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          166 WEVDLDAVEALADK-------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       166 ~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                      +.+|++.+++.+++       +++++++++|+||||...+   +++|+++|+++|+++|+|++|.....    ......+
T Consensus       125 ~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~----~~~~~~~  197 (370)
T TIGR02539       125 YKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM----PVSAKEI  197 (370)
T ss_pred             CCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc----CCCHHHc
Confidence            78999999998753       5678999999999999998   78888899999999999999997321    1111122


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +   ..++++|+||+++ +|.|+||++++.        ++++.++...
T Consensus       198 ~---~di~v~s~sK~~~-~~g~~G~l~~~~--------~~i~~l~~~~  233 (370)
T TIGR02539       198 G---ADFIVGSGHKSMA-ASGPCGVLGMSE--------EWEDIVLRKS  233 (370)
T ss_pred             C---CCEEEeeCccccc-CCCCEEEEEECH--------HHHhhhcccc
Confidence            1   2377799999987 567899999853        4777776654

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=2.6e-22  Score=183.93  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=167.0

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..++..+|+|..|.+..  .++. .+.+.+++.++++...   +....+..++++++++++.+..    ..+++++|+|+
T Consensus        35 d~dg~~~iD~~~g~~~~--~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~----~~~~v~~~~gg  105 (396)
T PRK02627         35 DDDGKEYLDFLAGIAVN--NLGHCHPKLVEAIQEQAAKLI---HTSNLYYIEPQEELAEKLVELS----GMDKVFFCNSG  105 (396)
T ss_pred             eCCCCEEEECCccHHhc--cCCCCCHHHHHHHHHHHhhcc---ccccccCCHHHHHHHHHHHhhc----CCCEEEECCCc
Confidence            34688899999986542  2343 4788899988886432   1111234678888999887753    34799999999


Q ss_pred             HHHHHHHHHHhcCCC-------CEEEEcCCCCcchHHHHHhcCceEE-EeecCC-CCCC----CCCHHHHHhhcccCccE
Q 022213          117 KQAVEVILSVLARPG-------ANVLLPRPGWPYYEGIAQRKQVEVR-HFDLLP-ERNW----EVDLDAVEALADKNTAA  183 (301)
Q Consensus       117 ~~al~~~~~~l~~~g-------d~Vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~-~~~~----~~~~~~l~~~~~~~~~~  183 (301)
                      ++|++.+++.+...+       ++|++..++|+++.......+.... .....+ ..++    ..|++.+++.+.+++++
T Consensus       106 ~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~  185 (396)
T PRK02627        106 AEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAA  185 (396)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEE
Confidence            999999999776433       6799999999987554443332211 000000 1111    12889999999878888


Q ss_pred             EEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213          184 MVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG  262 (301)
Q Consensus       184 v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG  262 (301)
                      +++..++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+. ..+...++...+++   +|||.++ +|+|+|
T Consensus       186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~pdi~---t~sK~~~-~G~rig  260 (396)
T PRK02627        186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPDIM---TLAKGLG-GGVPIG  260 (396)
T ss_pred             EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCCCEE---EEcchhh-CCcccE
Confidence            88888899999 688999999999999999999999999998766543 22222232223333   7999988 999999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          263 WLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      |++++.        ++++.+.... ....+.+++.|.+
T Consensus       261 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a  290 (396)
T PRK02627        261 AVLAKE--------KVADVFTPGDHGSTFGGNPLACAA  290 (396)
T ss_pred             EEEEcH--------HHHhccCCCCCCCCCCCCHHHHHH
Confidence            999853        3666665432 2233566677665

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.89  E-value=1.3e-21  Score=178.80  Aligned_cols=204  Identities=16%  Similarity=0.144  Sum_probs=153.8

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCC--CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNC--YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ...|||.--.-    --|+++.+.+++.+......     .+.  +.....+.++|+.+|+++        ..+++++++
T Consensus        18 ~~~~~~~~~~~----~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~--------g~~~~~~~~   85 (387)
T PRK09331         18 EEFINLDPIQR----GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL--------GMDEARVTH   85 (387)
T ss_pred             ccccccChhhc----CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh--------CCCcEEEeC
Confidence            45666643221    13566788898888764311     001  111224688999999998        235788999


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEEEc
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMVII  187 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~  187 (301)
                      |+++++..++.+++++||+|+++.++|.+....++..|++++.++...+.++.+|++.+++.+++       ++++|+++
T Consensus        86 g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~  165 (387)
T PRK09331         86 GAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT  165 (387)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence            99999999999999999999999999988777788899999999874334567999999998753       57889999


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +|+|+||...+   +++|+++|+++|+++++|++|+.-.    .+.....++.   .+++.|++|++++ +.|+||++++
T Consensus       166 ~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~----~~~~~~~~g~---D~~~~s~~K~l~~-~~~~G~l~~~  234 (387)
T PRK09331        166 HVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGR----MPVDGKKLGA---DFIVGSGHKSMAA-SAPSGVLATT  234 (387)
T ss_pred             CCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCC----cCCCHHHcCC---CEEEeeCcccccC-CCCEEEEEEC
Confidence            99999999988   8899999999999999999998522    1222222222   2889999999764 4589999874


Q ss_pred             C
Q 022213          268 D  268 (301)
Q Consensus       268 ~  268 (301)
                      .
T Consensus       235 ~  235 (387)
T PRK09331        235 E  235 (387)
T ss_pred             H
Confidence            3

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.89  E-value=7.3e-22  Score=179.40  Aligned_cols=186  Identities=17%  Similarity=0.203  Sum_probs=141.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g  152 (301)
                      +..|+.+ ....|++.++++.        ..+++++++|+++|+..++++++++||+|+++.|+|.+....+    ...+
T Consensus        45 Y~R~~~p-~~~~le~~lA~l~--------g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~  115 (382)
T TIGR02080        45 YSRSGNP-TRDLLQQALAELE--------GGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC  115 (382)
T ss_pred             ccCCCCc-hHHHHHHHHHHHh--------CCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence            4456553 4678999999987        2468999999999999999999999999999999998654433    2234


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++..++.       .|++.++++++++++++++++|+||||.+++   +++|+++|+++|+++|+|++|.......   
T Consensus       116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~---  182 (382)
T TIGR02080       116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN---  182 (382)
T ss_pred             eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence            55555431       4789999999888999999999999999999   7788888999999999999998654321   


Q ss_pred             CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCcccc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFI  296 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  296 (301)
                       ++. +..   .++++|+||.++. +|++.|++++.++       +++++++..... ..+.+++.
T Consensus       183 -pl~-~ga---Divv~S~sK~l~G~~~~~~G~i~~~~~-------~~~~~l~~~~~~~g~~~sp~~  236 (382)
T TIGR02080       183 -PLA-LGA---DLVLHSCTKYLNGHSDVIAGAVIAKDP-------QVAEELAWWANNLGVTGGAFD  236 (382)
T ss_pred             -chh-hCC---CEEEeecceeccCCCCceeEEEEeCCH-------HHHHHHHHHHHccCCCCCHHH
Confidence             221 111   2889999999864 7899999987553       466777655442 44444443

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.89  E-value=2.8e-21  Score=178.62  Aligned_cols=203  Identities=17%  Similarity=0.242  Sum_probs=153.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-----CCCCC---CCCCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-----NCYAT---NSGIPPARRAIADYLSRDLPYKLS-ADDVY  111 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-----~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~  111 (301)
                      +.+++.|+.+.+.     ++|+.+.+++.+.+.....     ..|..   ...+.++|+.+++++      +.+ +++|+
T Consensus        30 ~~~~iyLd~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~v~   98 (424)
T PLN02855         30 GSKLVYLDNAATS-----QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI------NASTSREIV   98 (424)
T ss_pred             CCCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc------CCCCCCEEE
Confidence            3568999998753     4567888888877653211     01111   112458888999988      333 57999


Q ss_pred             EcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          112 VTLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      +|+|+|+++..+++++    +++||+|+++.+.|++    +...++..|.+++.++++.+  ..++++.+++.+++++++
T Consensus        99 ~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~l  176 (424)
T PLN02855         99 FTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSEKTKL  176 (424)
T ss_pred             EeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhccCceE
Confidence            9999999999999864    5789999999998874    34455678999999987543  348999999999888999


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +++++|+||||.+++   +++|+++|+++|+++|+|++|..    +..+..+..++.   .+++.|++|.+|.+|  +||
T Consensus       177 v~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~~~---d~~~~s~~K~~gp~G--~G~  244 (424)
T PLN02855        177 VATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTLGA---DFLVASSHKMCGPTG--IGF  244 (424)
T ss_pred             EEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhcCC---CEEEeecccccCCCc--cEE
Confidence            999999999999999   77888999999999999999964    222222333322   278999999766555  899


Q ss_pred             EEeeC
Q 022213          264 LVTND  268 (301)
Q Consensus       264 ~~~~~  268 (301)
                      ++++.
T Consensus       245 l~~~~  249 (424)
T PLN02855        245 LWGKS  249 (424)
T ss_pred             EEEch
Confidence            98854

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.89  E-value=3.4e-21  Score=176.97  Aligned_cols=203  Identities=17%  Similarity=0.247  Sum_probs=154.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--C--CCC----CCCCCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--N--CYA----TNSGIPPARRAIADYLSRDLPYKLS-ADDVY  111 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~--~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~  111 (301)
                      +.+++.|++|...     ++|..+.+++.+.+.....  .  .+.    ....+.++|+.+++++      +.+ +++|+
T Consensus        16 ~~~~~yld~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------~~~~~~~v~   84 (403)
T TIGR01979        16 GKPLVYLDSAATS-----QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI------NAASDEEIV   84 (403)
T ss_pred             CCceEEEeCcccc-----CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CcCCCCeEE
Confidence            5678999999753     4567788888777653210  0  010    0113558889999988      344 67999


Q ss_pred             EcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          112 VTLGCKQAVEVILSVL----ARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      +|+|+++++..++.++    .++||+|+++++.|++.    ...++..|.+++.++++  .++.++++.+++.+++++++
T Consensus        85 ~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~l  162 (403)
T TIGR01979        85 FTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTEKTKL  162 (403)
T ss_pred             EeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhccCCeE
Confidence            9999999999999875    47899999999988753    34556789999999875  34558999999999889999


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +++++|+||||..++   +++|+++|+++|+++|+|++|+...    .+..+..+.   ..+++.|++|.+|.+|  +|+
T Consensus       163 v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~----~~~~~~~~~---~d~~~~s~~K~~gp~G--~g~  230 (403)
T TIGR01979       163 VAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH----MPVDVQALD---CDFYVFSGHKMYGPTG--IGV  230 (403)
T ss_pred             EEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc----cccCccccC---CCEEEEecccccCCCC--ceE
Confidence            999999999999999   8888999999999999999997532    222232222   3388999999887666  889


Q ss_pred             EEeeC
Q 022213          264 LVTND  268 (301)
Q Consensus       264 ~~~~~  268 (301)
                      ++++.
T Consensus       231 l~~~~  235 (403)
T TIGR01979       231 LYGKE  235 (403)
T ss_pred             EEEch
Confidence            88753

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.88  E-value=2.1e-21  Score=177.97  Aligned_cols=200  Identities=20%  Similarity=0.206  Sum_probs=150.8

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ++.|+.+-+.     ++|+.+.+++.+.+....   ...|....+    ..++|+.+++++      +.++++|++++|+
T Consensus        18 ~~yl~~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~------~~~~~~v~~~~~~   86 (397)
T TIGR01976        18 RVFFDNPAGT-----QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL------NADPPEVVFGANA   86 (397)
T ss_pred             eEEecCCccC-----CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEeCCH
Confidence            6899888753     456788898888775321   123543323    357778888877      3455679999999


Q ss_pred             HHHHHHHHHHh---cCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213          117 KQAVEVILSVL---ARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       117 ~~al~~~~~~l---~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      ++++..++.++   .++||+|+++.+.|.+..    ..++..|.++..++++.+ ++.++++.+++.++++++++++++|
T Consensus        87 t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~  165 (397)
T TIGR01976        87 TSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAA  165 (397)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCC
Confidence            99998888776   579999999999987542    455778999999987542 3568999999999888999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +||||..++   +++|+++|+++|+++|+|+++..    +.....+..++   ..+++.|++|.+   |.|+||+++++
T Consensus       166 ~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~~~---~d~~~~s~~K~~---g~~~G~l~~~~  231 (397)
T TIGR01976       166 SNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PHGLIDVQATG---ADFLTCSAYKFF---GPHMGILWGRP  231 (397)
T ss_pred             CCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cccCCCHHHcC---CCEEEEechhhc---CCceEEEEEcH
Confidence            999999998   88889999999999999999753    22222222222   226678999986   45799998854

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=1.7e-21  Score=177.05  Aligned_cols=188  Identities=18%  Similarity=0.238  Sum_probs=141.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g  152 (301)
                      +.+|+.+ ....|++++|++..        .+++++++|+++++..++.+++++||+|++++|.|.+....+.    ..+
T Consensus        46 Y~R~~~p-t~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g  116 (386)
T PRK08045         46 YSRRGNP-TRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC  116 (386)
T ss_pred             eeCCCCc-cHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence            4456654 46789999999872        3479999999999999999999999999999999986433322    234


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++..++       ..|++.+++.++++++++++++|+||||.+++   +++|.++|+++|+++|+|++|......    
T Consensus       117 i~v~~vd-------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~----  182 (386)
T PRK08045        117 YRVLFVD-------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ----  182 (386)
T ss_pred             eEEEEeC-------CCCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----
Confidence            5665553       15889999999888999999999999999999   778888888999999999999875432    


Q ss_pred             CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      .++. +..+   ++++|+||.++. ++.+.|++++.++       +++++++.... ...+.+++.+.
T Consensus       183 ~pl~-~gaD---ivv~S~tK~l~G~~d~~~G~vi~~~~-------~~~~~l~~~~~~~g~~~~p~~~~  239 (386)
T PRK08045        183 NPLA-LGAD---LVLHSCTKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSY  239 (386)
T ss_pred             Cchh-hCCC---EEEeecceeccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHHH
Confidence            2222 2222   899999999864 6788999987543       46666664433 34456666554

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.88  E-value=8.2e-22  Score=179.61  Aligned_cols=238  Identities=13%  Similarity=0.115  Sum_probs=158.4

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .++..+|+|..|.+..+-. ..++.+.+++.+++.....  ..|.     .+.++++++.+.+.++    .+++++++|+
T Consensus        24 ~~g~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~g----~~~~~~~~sg   93 (379)
T TIGR00707        24 VNGKEYLDFVAGIAVNSLG-HAHPKLVEALKEQLEKLVHVSNLYY-----TEPQEELAEKLVEHSG----ADRVFFCNSG   93 (379)
T ss_pred             CCCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHhhccccccccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCc
Confidence            4578899999974322111 2447888988888874321  1232     2344444444444333    3599999999


Q ss_pred             HHHHHHHHHHhc---C----CCCEEEEcCCCCcchHHHHHhcCceEEE----eecCCCCCCC--CCHHHHHhhcccCccE
Q 022213          117 KQAVEVILSVLA---R----PGANVLLPRPGWPYYEGIAQRKQVEVRH----FDLLPERNWE--VDLDAVEALADKNTAA  183 (301)
Q Consensus       117 ~~al~~~~~~l~---~----~gd~Vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~--~~~~~l~~~~~~~~~~  183 (301)
                      ++++..+++.+.   .    +||+|++++|+|+++.......+.....    .++..+..+.  .|++.+++.+++++++
T Consensus        94 ~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~  173 (379)
T TIGR00707        94 AEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAA  173 (379)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeE
Confidence            999999998662   2    3799999999999876555554433221    1221111111  1789999988777888


Q ss_pred             EEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213          184 MVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG  262 (301)
Q Consensus       184 v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG  262 (301)
                      ++++.++|++|.. ++.+++++|.++|+++++++|+||+|.++.+.+. ..++.......+++   +|||.++ +|+|+|
T Consensus       174 v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~~~~d~~---t~sK~~~-~G~riG  248 (379)
T TIGR00707       174 VIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPDII---TLAKGLG-GGVPIG  248 (379)
T ss_pred             EEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcCCCCCEE---EEccccc-CCcccE
Confidence            8886566677764 6899999999999999999999999998766443 22222222223443   6899988 999999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          263 WLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      |++++.        ++++.++... ....+.++++|.+
T Consensus       249 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  278 (379)
T TIGR00707       249 ATLAKE--------EVAEAFTPGDHGSTFGGNPLACAA  278 (379)
T ss_pred             EEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHH
Confidence            999843        4777776532 2233466777765

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=1.7e-21  Score=177.83  Aligned_cols=180  Identities=16%  Similarity=0.211  Sum_probs=138.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~  160 (301)
                      ...+|++.+|+++        ..++.++++++++|+..++.+++++||+|+++.|.|.+...    .+...|+++.+++.
T Consensus        65 ~~~~le~~lA~l~--------g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~  136 (398)
T PRK08249         65 TVQAFEEKVRILE--------GAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET  136 (398)
T ss_pred             HHHHHHHHHHHHh--------CCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence            4678999999998        23567888888999999999999999999999999987533    34567888877653


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++++++++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.......    ++. +..
T Consensus       137 -------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l~-~~~  201 (398)
T PRK08249        137 -------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN----PLA-LGA  201 (398)
T ss_pred             -------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC----chh-hCC
Confidence                   5899999999888999999999999999999   7788888999999999999999654321    121 122


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccc
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQ  297 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q  297 (301)
                      +   ++++|+||.++.+|.++|++++.+       ++++++++..... ..+.+.+.+
T Consensus       202 D---ivv~S~sK~l~g~~~~~gG~vv~~-------~~l~~~l~~~~~~~g~~~s~~~a  249 (398)
T PRK08249        202 D---LVIHSATKFLSGHADALGGVVCGS-------KELMEQVYHYREINGATMDPMSA  249 (398)
T ss_pred             C---EEeccCceecCCCCCceEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHH
Confidence            2   788999999988888875544433       2477777665542 334444433

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.88  E-value=3.5e-21  Score=175.60  Aligned_cols=158  Identities=22%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~  160 (301)
                      ...+|++.+++++        ..+++++++|+++|+..++.+++++||+|+++.+.|.+..    ..+...|+++++++.
T Consensus        62 ~~~~le~~la~l~--------g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~  133 (390)
T PRK08133         62 TVTMFQERLAALE--------GAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL  133 (390)
T ss_pred             HHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence            3578889999887        3457899999999999999999999999999999987643    345678999998875


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+..    ++ .++.
T Consensus       134 -------~d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~----pl-~~g~  198 (390)
T PRK08133        134 -------TDLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ----PL-KLGA  198 (390)
T ss_pred             -------CCHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhCC
Confidence                   2788999999889999999999999999998   8899999999999999999997644321    11 1111


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         .+++.|+||.++.+|.++|++++.+
T Consensus       199 ---Divv~S~sK~~~g~g~~~GG~vv~~  223 (390)
T PRK08133        199 ---DVVIHSATKYLDGQGRVLGGAVVGS  223 (390)
T ss_pred             ---cEEEeecceeecCCcceEeEEEEcC
Confidence               2889999999999999996555433

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.88  E-value=4.2e-21  Score=175.45  Aligned_cols=194  Identities=22%  Similarity=0.254  Sum_probs=141.9

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      +.|.++.+-.     ++.++.+.+..........+..|+.+ ....|++.+|+++.        .+..+++++++.++..
T Consensus        30 ~pi~~~~~~~-----~~~~~~~~~~~~~~~~~~~y~r~~~p-~~~~Le~~lA~l~G--------~~~~~~~~sG~~Ai~~   95 (398)
T PRK07504         30 EALFLTQGFV-----YDTAEAAEARFKGEDPGFIYSRYSNP-TVDMFEKRMCALEG--------AEDARATASGMAAVTA   95 (398)
T ss_pred             CCeECCCCcc-----CCCHHHHHHHhccCcCCceeecCCCc-hHHHHHHHHHHHhC--------CCeeeEecCHHHHHHH
Confidence            4577777752     34444444322111011123345443 46889999999972        2344567788999988


Q ss_pred             HHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          123 ILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++.+++++||+|+++.+.|.++...    +...|+++..++.       .|++.+++++++++++|++++|+||||.+.+
T Consensus        96 ~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d  168 (398)
T PRK07504         96 AILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID  168 (398)
T ss_pred             HHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC
Confidence            8888899999999999999975433    3456888887752       6899999999889999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         +++|.++|+++|+++|+|++|....+.  .  ++ .++   ..+++.|+||.++++|.|+|++++.+
T Consensus       169 ---l~~I~~la~~~gi~lvvD~a~a~~~~~--~--~~-~~g---aDivv~S~sK~l~g~g~~~GG~vv~~  227 (398)
T PRK07504        169 ---IAAVAKIANQAGAKLVVDNVFATPLFQ--K--PL-ELG---AHIVVYSATKHIDGQGRCLGGVVLSD  227 (398)
T ss_pred             ---HHHHHHHHHHcCCEEEEECCccccccC--C--ch-hhC---CCEEEeeccccccCCccceEEEEEeC
Confidence               888888899999999999999865432  1  11 122   23889999999999999997655544

>PLN02721 threonine aldolase

Probab=99.88  E-value=1.5e-21  Score=176.06  Aligned_cols=216  Identities=16%  Similarity=0.124  Sum_probs=148.7

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +.+++|+.+.|.    . +++.+.+++.+.........|.+  ...+||++++++++.        +.+++++++++++.
T Consensus         5 ~~~~~~~~~~~~----~-~~~~~~~a~~~~~~~~~~~~~~~--~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~   69 (353)
T PLN02721          5 SRVVDLRSDTVT----K-PTDAMRAAMANAEVDDDVLGYDP--TALRLEEEMAKIFGK--------EAALFVPSGTMGNL   69 (353)
T ss_pred             hhhhhhhccccc----C-CCHHHHHHHHhccCCCcccCCCH--HHHHHHHHHHHHhCC--------ceeEEecCccHHHH
Confidence            568899999874    3 34677777765311122223333  368999999999932        33566666677777


Q ss_pred             HHHHHhcC-CCCEEEEcCCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cCccEEEEcCC-
Q 022213          122 VILSVLAR-PGANVLLPRPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KNTAAMVIINP-  189 (301)
Q Consensus       122 ~~~~~l~~-~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p-  189 (301)
                      .++.++++ +||+|++++|+|.....   .+...|.+++.++.+  ..+.+|++.+++.++       +++++++++++ 
T Consensus        70 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~  147 (353)
T PLN02721         70 ISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTH  147 (353)
T ss_pred             HHHHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccc
Confidence            88888787 99999999999865443   567789999988764  345689999999887       46788888775 


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +||||.+++.+++++|+++|+++|+++|+|++|.......... +...+..... .++.|+||+++++   +||++..+ 
T Consensus       148 ~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~l~~~---~G~~~~~~-  221 (353)
T PLN02721        148 ANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVKAAD-SVSVCLSKGLGAP---VGSVIVGS-  221 (353)
T ss_pred             cccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhhhCC-EEEEecccccCCc---eeeEEecC-
Confidence            7899999999999999999999999999999986422110001 1111111112 4455899997643   67744333 


Q ss_pred             CCcccchhHHHHHHhhh
Q 022213          270 NGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (301)
                            ++++..++...
T Consensus       222 ------~~~~~~~~~~~  232 (353)
T PLN02721        222 ------KSFIRKAKRLR  232 (353)
T ss_pred             ------HHHHHhHHHHH
Confidence                  24666655543

>PRK10534 L-threonine aldolase; Provisional

Probab=99.88  E-value=6.4e-22  Score=177.25  Aligned_cols=212  Identities=17%  Similarity=0.126  Sum_probs=148.6

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI  123 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~  123 (301)
                      +|+|+.+..   | . +++.+.+++.+...  ....|++..+..+|++++++++      +  .+.+++++|+++++..+
T Consensus         1 ~~~~~~~~~---~-~-p~~~~~~a~~~~~~--~~~~Y~~~~~~~~L~~~la~~~------g--~~~~~v~~~g~~a~~~~   65 (333)
T PRK10534          1 MIDLRSDTV---T-R-PSRAMLEAMMAAPV--GDDVYGDDPTVNALQDYAAELS------G--KEAALFLPTGTQANLVA   65 (333)
T ss_pred             CcccccccC---C-C-CCHHHHHHHHhccC--CCcccCCCHHHHHHHHHHHHHh------C--CCeEEEeCchHHHHHHH
Confidence            477888753   2 2 55788888766443  2346876667899999999998      2  34557888888888888


Q ss_pred             HHHhcCCCCEEEEcCCCCcc-hHHH-HHhcC-ceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcc
Q 022213          124 LSVLARPGANVLLPRPGWPY-YEGI-AQRKQ-VEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCG  194 (301)
Q Consensus       124 ~~~l~~~gd~Vl~~~p~~~~-~~~~-~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG  194 (301)
                      +.+++++||+|+++.|+|.. |... ....+ .+++.+++.  .++.+|++++++++++      ++++++++||+  ||
T Consensus        66 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G  141 (333)
T PRK10534         66 LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG  141 (333)
T ss_pred             HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence            88889999999999888753 3221 23333 566766653  4577999999998865      57889999776  59


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE-EEEeeCCCCcc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG-WLVTNDPNGIF  273 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG-~~~~~~~~~~~  273 (301)
                      .+++.+++++|+++|+++++++++||+|....... ............+.+ +.||||.|+++   +| |++++      
T Consensus       142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~-~~~~~~~~~~~~~~~-~~s~SK~~~~~---~G~~~~~~------  210 (333)
T PRK10534        142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVA-YGCELKEITQYCDSF-TICLSKGLGTP---VGSLLVGN------  210 (333)
T ss_pred             eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHH-cCCCHHHHHhcCCEE-EEEeEcCCCCc---ccceEEcC------
Confidence            99999999999999999999999999987322100 011111111111222 34899998775   78 56652      


Q ss_pred             cchhHHHHHHhhhc
Q 022213          274 QKSGIIDSIKDCLS  287 (301)
Q Consensus       274 ~~~~~~~~~~~~~~  287 (301)
                        ++++++++++..
T Consensus       211 --~~~i~~~~~~~~  222 (333)
T PRK10534        211 --RDYIKRARRWRK  222 (333)
T ss_pred             --HHHHHHHHHHHH
Confidence              358888877654

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.88  E-value=3.8e-21  Score=175.79  Aligned_cols=179  Identities=18%  Similarity=0.237  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~  161 (301)
                      ...|++.+|++.    +    .+..++++++++++.+++.+++++||+|+++.|.|.+    +...+...|.+++.++. 
T Consensus        62 ~~~Le~~lA~l~----g----~~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-  132 (405)
T PRK08776         62 RDLLGEALAELE----G----GAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL-  132 (405)
T ss_pred             HHHHHHHHHHHh----C----CCceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-
Confidence            467778888775    2    1334556666899999999999999999999999987    34445566888887764 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++.+++.++++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    ..++. ++.+
T Consensus       133 ------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl~-~gaD  198 (405)
T PRK08776        133 ------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----QKPLE-FGAD  198 (405)
T ss_pred             ------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc----CCccc-ccCC
Confidence                  4789999998888999999999999999987   88999999999999999999986321    22232 2222


Q ss_pred             CCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccc
Q 022213          242 VPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQ  297 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q  297 (301)
                         +++.|.||.++.+ +...|+++++++       ++.++++.... ...+.+++.+
T Consensus       199 ---ivv~S~tK~l~g~~~~~~G~vv~~~~-------~l~~~l~~~~~~~g~~~s~~~a  246 (405)
T PRK08776        199 ---LVLHSTTKYINGHSDVVGGAVVARDA-------ELHQQLVWWANALGLTGSPFDA  246 (405)
T ss_pred             ---EEEecCceeecCCCCceEEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHH
Confidence               8999999999876 578899887543       46666655433 2333444443

>PRK02948 cysteine desulfurase; Provisional

Probab=99.88  E-value=8.7e-21  Score=173.02  Aligned_cols=198  Identities=15%  Similarity=0.083  Sum_probs=145.5

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--C------CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--N------SGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      +.|+.+..     -++|+.+.+++.+.++... .++..  .      .-+.++|+.+++++      +.++++|++|+|+
T Consensus         2 ~yld~a~~-----~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~~~g~   69 (381)
T PRK02948          2 IYLDYAAT-----TPMSKEALQTYQKAASQYF-GNESSLHDIGGTASSLLQVCRKTFAEMI------GGEEQGIYFTSGG   69 (381)
T ss_pred             EeccCCCC-----CCCCHHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcH
Confidence            45666643     2456788888887775311 11110  0      01346677777777      4567899999999


Q ss_pred             HHHHHHHHHHhc----CCCCEEEEcCCCCcch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213          117 KQAVEVILSVLA----RPGANVLLPRPGWPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       117 ~~al~~~~~~l~----~~gd~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      ++++..++.+++    ++||.|++....|+++   ...++..|.++..++++.  ++.+|++.+++.++++++.+++++|
T Consensus        70 t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~  147 (381)
T PRK02948         70 TESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHA  147 (381)
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECC
Confidence            999999988886    5789999998777654   445567799999998753  3568999999999888899999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +||||.+++   +++|.++|+++|+++++|+++....    .+..+..+   +..+++.|+||.+|.+|  +|+++++.
T Consensus       148 ~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~g~----~~~~~~~~---~~d~~~~s~~K~~gp~G--~G~l~~~~  214 (381)
T PRK02948        148 NSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTFGK----LPIDVFEM---GIDSLSVSAHKIYGPKG--VGAVYINP  214 (381)
T ss_pred             cCCcEeehh---HHHHHHHHHHcCCEEEEEChhhccc----cccCcccC---CCCEEEecHHhcCCCCc--EEEEEEcC
Confidence            999999999   7788889999999999997765421    12222222   23478899999988888  78888754

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.87  E-value=4.6e-21  Score=176.44  Aligned_cols=214  Identities=19%  Similarity=0.200  Sum_probs=147.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++..++|+..+..   .+..++.+.+++.+++.....      ..|+......+|++.+++++      + .++.+++++
T Consensus        45 ~~~~~~~~sn~yl---~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~------g-~~~~i~~~s  114 (410)
T PRK13392         45 PRRVTIWCSNDYL---GMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH------G-KESALLFTS  114 (410)
T ss_pred             CceEEEEECCCcc---CCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh------C-CCCEEEECc
Confidence            3567888887753   467788999999888764211      12333223567888888887      2 234566665


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc----ccCccEEEEcC
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA----DKNTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~v~l~~  188 (301)
                      | ++++..++..+..  +||.|+++...|..+...++..|.++..++.       .|.+.+++.+    .+++++|++++
T Consensus       115 G-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v~i~~  186 (410)
T PRK13392        115 G-YVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLIAFES  186 (410)
T ss_pred             H-HHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence            5 6788888887754  8998888877787777777778888766542       1344444433    34678999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+||||.+.+   +++|.++|+++++++|+||+|....++..........+...+ .++++||||.|+++|   ||++++
T Consensus       187 ~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~  260 (410)
T PRK13392        187 VYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAAS  260 (410)
T ss_pred             CCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcC
Confidence            9999999999   888888899999999999999955443211111111111122 288899999999998   999863


Q ss_pred             CCCCcccchhHHHHHHhhh
Q 022213          268 DPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~  286 (301)
                      .        ++++.++++.
T Consensus       261 ~--------~~~~~l~~~~  271 (410)
T PRK13392        261 A--------DLIDFVRSFA  271 (410)
T ss_pred             H--------HHHHHHHHhC
Confidence            2        4777777654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.87  E-value=7.6e-21  Score=173.99  Aligned_cols=166  Identities=22%  Similarity=0.266  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~  160 (301)
                      ....|++.+++++.        .+..+++++++.|+..++.+++++||+|+++.|.|....    ..+...|+++.+++.
T Consensus        66 ~~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  137 (403)
T PRK07503         66 TLALLEQRMASLEG--------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL  137 (403)
T ss_pred             hHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence            46889999999872        234677778899999999999999999999999987532    344568999888875


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    .++. +..
T Consensus       138 -------~d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~----~~l~-~g~  202 (403)
T PRK07503        138 -------TDPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ----RPLE-LGA  202 (403)
T ss_pred             -------CCHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh-hCC
Confidence                   3789999999888999999999999999998   888888899999999999999864332    1221 222


Q ss_pred             CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                         .++++|+||.++.+| .|.||++. +       +++.++++.
T Consensus       203 ---Di~v~S~tK~l~g~gd~~gG~v~~-~-------~~l~~~l~~  236 (403)
T PRK07503        203 ---DLVVHSATKYLGGHGDITAGLVVG-G-------KALADRIRL  236 (403)
T ss_pred             ---CEEEccccccccCCCceeEEEEEc-C-------HHHHHHHHh
Confidence               289999999999876 77888874 3       246677763

>PRK07179 hypothetical protein; Provisional

Probab=99.87  E-value=1.6e-20  Score=172.78  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=156.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---C--CCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---K--FNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~--~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      .+..+++|+..+.   -++...+.+.+++.++++..   .  ...|. ......+|++.+|+++        ..+.++++
T Consensus        52 ~g~~~~~~~~~~Y---L~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~--------g~~~~~~~  120 (407)
T PRK07179         52 PGPDAIILQSNDY---LNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT--------GFESCLLC  120 (407)
T ss_pred             CCCcEEEeecCCc---cCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh--------CCCcEEEE
Confidence            4566788887764   35667788999999888631   1  01111 1123467888888887        23567889


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNP  192 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~np  192 (301)
                      +|+++|+..++++++.+||.|++..+.|......++..|.++..++.       .|++.+++.+++ +++++++++++||
T Consensus       121 ~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~  193 (407)
T PRK07179        121 QSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYST  193 (407)
T ss_pred             CCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence            99999999999999999999999999998887777778887765542       588999998865 4677888999999


Q ss_pred             cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEeeCCCC
Q 022213          193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTNDPNG  271 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~~~  271 (301)
                      ||.+++   +++|.++|+++|+++|+||+|....++......+..++...+ .+++.|+||.++   .|+||++++.   
T Consensus       194 tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~---  264 (407)
T PRK07179        194 TGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPR---  264 (407)
T ss_pred             CCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCH---
Confidence            999999   788889999999999999999854443211111223322222 388899999975   3689998743   


Q ss_pred             cccchhHHHHHHhh
Q 022213          272 IFQKSGIIDSIKDC  285 (301)
Q Consensus       272 ~~~~~~~~~~~~~~  285 (301)
                           ++++.++..
T Consensus       265 -----~~~~~~~~~  273 (407)
T PRK07179        265 -----ELAEYVPFV  273 (407)
T ss_pred             -----HHHHHHHHh
Confidence                 355665543

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.87  E-value=3.7e-21  Score=176.95  Aligned_cols=164  Identities=21%  Similarity=0.203  Sum_probs=133.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV  153 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~  153 (301)
                      .+|+.+ ...+|++.+|+++        ..+..+++++++.|+..++.+++++||+|+++.+.|.+.    ...+...|+
T Consensus        52 sr~~~p-~~~~le~~lA~l~--------g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        52 SRLMNP-TTDVLEQRIAALE--------GGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             ECCCCh-hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence            344443 4578999999997        235789999999999999999999999999999998753    344567899


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~  233 (301)
                      ++++++.       .|++.+++.++++++++++++|+||+|.+.+   +++|+++|+++|+++|+|++|+....    ..
T Consensus       123 ~v~~v~~-------~d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~----~~  188 (418)
T TIGR01326       123 EVRFVDP-------DDPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL----CR  188 (418)
T ss_pred             EEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc----CC
Confidence            9988874       2789999999888999999999999999998   88888999999999999999974321    11


Q ss_pred             CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++    ..+..|++.|+||.++.+|.|+||++++.
T Consensus       189 ~l----~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       189 PI----DHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             ch----hcCCeEEEECccccccCCccceEEEEEec
Confidence            11    11245999999999999999999999865

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.87  E-value=1e-20  Score=170.30  Aligned_cols=201  Identities=17%  Similarity=0.125  Sum_probs=142.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+++|+..+.-   ..+-++++.+++++.++...  ...|....|    ..++++.+++++    +  .  ++.++++++
T Consensus         2 ~~~~~~~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~--~~~iv~~sg   70 (349)
T cd06454           2 KVLNFCSNDYL---GLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH----G--K--EAALVFSSG   70 (349)
T ss_pred             CceecccCCcc---ccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHh----C--C--CCEEEeccH
Confidence            46677766532   34445889999999887422  112222123    356666666665    2  2  345666677


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-----CccEEEEcCCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-----NTAAMVIINPGN  191 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~n  191 (301)
                      ++++..++++++++||+|+++.|+|..+...++..|.++++++.       .|.+.+++.+++     +++++++++++|
T Consensus        71 ~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~  143 (349)
T cd06454          71 YAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYS  143 (349)
T ss_pred             HHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEecccc
Confidence            88998888999999999999999999988888889998887652       477788887753     356777789999


Q ss_pred             CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |||...+   +++|+++|+++|+++|+|++|+...+... ...........+.+++++|+||.++.+|   ||++++
T Consensus       144 ~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~  214 (349)
T cd06454         144 MDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGS  214 (349)
T ss_pred             CCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECC
Confidence            9999988   88889999999999999999975333211 1110111122345799999999988766   998863

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=7.4e-21  Score=172.57  Aligned_cols=176  Identities=17%  Similarity=0.198  Sum_probs=137.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g  152 (301)
                      +.+|+.+ ....|++.+|++.        ..+++++++|+++++..++.+++++||+|+++.|.|.+....    ....|
T Consensus        47 Y~R~~np-t~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g  117 (388)
T PRK08861         47 YTRSGNP-NRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD  117 (388)
T ss_pred             ccCCCCc-hHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC
Confidence            4445553 5688999999998        358999999999999999999999999999999999864332    23346


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++.+++.       .|++.+++++++++++|++++|+||||.+++   +++|+++|+++|+++|+|++|....+.  . 
T Consensus       118 i~v~~vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~--~-  184 (388)
T PRK08861        118 FKVQFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ--K-  184 (388)
T ss_pred             eEEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC--C-
Confidence            77777752       5889999999889999999999999999999   778888899999999999999875432  1 


Q ss_pred             CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                       ++ .++-+   +++.|++|.++.+ +...|++++.+.       ++.++++...
T Consensus       185 -pl-~~GaD---ivv~S~tK~l~G~~d~~gG~i~~~~~-------~~~~~~~~~~  227 (388)
T PRK08861        185 -PL-ELGAD---FVIHSTTKYINGHSDVIGGVLITKTK-------EHAEELAWWG  227 (388)
T ss_pred             -Cc-ccCCC---EEEeecceeccCCCcceeEEEEecHH-------HHHHHHHHHH
Confidence             12 12222   8999999998874 578899886442       3556665443

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.87  E-value=1.1e-20  Score=171.91  Aligned_cols=194  Identities=16%  Similarity=0.173  Sum_probs=146.5

Q ss_pred             CCChHHHHHHHHHHHhcCC----CCCCCC----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC
Q 022213           58 FRTAVEAEDAIVDAVRSGK----FNCYAT----NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR  129 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~----~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~  129 (301)
                      +++|+.+.+++.+.++...    ...|..    ..+..++|+.+++++..     ...++|++|+|+++++..++.++++
T Consensus        10 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~~   84 (376)
T TIGR01977        10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLLK   84 (376)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhccC
Confidence            5677889999888776432    112322    13466888999998832     1335899999999999999999999


Q ss_pred             CCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHH
Q 022213          130 PGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI  205 (301)
Q Consensus       130 ~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i  205 (301)
                      +||+|+++.+.|..+.    ..++..|.+++.++.+.  ++.+|++.+++.++++++++++++|+||||.+++   +++|
T Consensus        85 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~~~i  159 (376)
T TIGR01977        85 EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTILP---IEEI  159 (376)
T ss_pred             CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCC---HHHH
Confidence            9999999999988653    34455699999888753  4568999999999888999999999999999999   7788


Q ss_pred             HHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       206 ~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .++|+++|+++|+|++++....    +..+....-   -+++.|++|+++.|. .+|.+++.+.
T Consensus       160 ~~l~~~~~~~livD~a~~~g~~----~~~~~~~~~---D~~~~s~~K~l~~p~-g~g~l~~~~~  215 (376)
T TIGR01977       160 GELAQENGIFFILDAAQTAGVI----PIDMTELAI---DMLAFTGHKGLLGPQ-GTGGLYIREG  215 (376)
T ss_pred             HHHHHHcCCEEEEEhhhccCcc----CCCchhcCC---CEEEecccccccCCC-CceEEEEcCC
Confidence            8999999999999999986332    112222222   288889999976553 3676666554

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=7.4e-21  Score=173.34  Aligned_cols=170  Identities=22%  Similarity=0.243  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~  159 (301)
                      ....+|++.+|+++..        +..++++++++|+..++.+++++||+|+++.|.|.+....+.    ..|+++..++
T Consensus        61 p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d  132 (388)
T PRK07811         61 PTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVD  132 (388)
T ss_pred             ccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeC
Confidence            4678999999999832        334555677899999999999999999999999986433332    3577777765


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .       .|++.+++.+++++++|++++|+||||...+   +++|+++|+++|+++|+|++|+.....    .++. ..
T Consensus       133 ~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~p~~-~g  197 (388)
T PRK07811        133 L-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ----QPLA-LG  197 (388)
T ss_pred             C-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cchh-hC
Confidence            4       4889999999889999999999999999887   888899999999999999999875432    1222 11


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      .   -+++.|+||.++.+| .+.||+++++.       ++.++++...
T Consensus       198 a---Divv~S~sK~l~g~~~~~gG~vv~~~~-------~l~~~~~~~~  235 (388)
T PRK07811        198 A---DVVVHSTTKYIGGHSDVVGGALVTNDE-------ELDEAFAFLQ  235 (388)
T ss_pred             C---cEEEecCceeecCCCCcEEEEEEECCH-------HHHHHHHHHH
Confidence            2   289999999998864 57899987553       3656665543

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.87  E-value=9.5e-21  Score=173.70  Aligned_cols=206  Identities=20%  Similarity=0.249  Sum_probs=153.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-----NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +.++++|+.|+|+    ++.|+.+.++..+. .  ....|.+     ..|..++++++++++.+.++.  +.++++++++
T Consensus        19 ~~~~~~l~~g~~~----~~~p~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~   89 (398)
T cd00613          19 DQSMSFLGSGTYK----HNPPAVIKRNILEN-E--FYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDE   89 (398)
T ss_pred             ccCcccccccccC----CcCcHHHHHHhccc-c--CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCc
Confidence            4567999999975    66777776666554 2  2234655     678999999999999987764  4447777775


Q ss_pred             HHH-HHHHHHHHhcCC--CCEEEEcCCCCcchHHHHHhcC----ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213          116 CKQ-AVEVILSVLARP--GANVLLPRPGWPYYEGIAQRKQ----VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       116 ~~~-al~~~~~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      ++. +...+..++..+  ||+|++++|.|..+...+...+    .+++.+++..  ++.+|++.+++.+.++++++++++
T Consensus        90 g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~  167 (398)
T cd00613          90 ATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQY  167 (398)
T ss_pred             hHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEEC
Confidence            554 444445555665  9999999999999887777776    8888888743  346899999999988899999998


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEE
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWL  264 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~  264 (301)
                      |+ |+|.+.+  .+++|.++|+++|+++|+|+++......    .....+   +..+++.|+||++ +|    |+|+||+
T Consensus       168 ~~-~~G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~~----~~~~~~---~~d~~~~s~~K~~-~p~g~Ggp~~g~l  236 (398)
T cd00613         168 PN-TLGVFED--LIKEIADIAHSAGALVYVDGDNLNLTGL----KPPGEY---GADIVVGNLQKTG-VPHGGGGPGAGFF  236 (398)
T ss_pred             CC-CCceecc--hHHHHHHHHHhcCCEEEEEeccccccCC----CChHHc---CCCEEEeeccccC-CCCCCCCCceeEE
Confidence            85 8999953  4699999999999999999987642211    111112   2349999999997 66    8999999


Q ss_pred             EeeC
Q 022213          265 VTND  268 (301)
Q Consensus       265 ~~~~  268 (301)
                      +++.
T Consensus       237 ~~~~  240 (398)
T cd00613         237 AVKK  240 (398)
T ss_pred             EEhh
Confidence            9854

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.87  E-value=9.3e-21  Score=174.02  Aligned_cols=218  Identities=14%  Similarity=0.089  Sum_probs=154.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC------CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG------KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      .+..++|..|+.      .+++.+++++.+.+...      ....|....+...+++.+++++.+.++.  +...|+++ 
T Consensus        18 ~~~~~~~~~~~~------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~v~~~-   88 (402)
T cd00378          18 QRETLELIASEN------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA--EYANVQPH-   88 (402)
T ss_pred             HHhCeeeeccCC------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC--CceeeecC-
Confidence            356889977752      23678888887654210      1123445556677887776666665553  34455555 


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-----HHhcCceEEEeecCCC-CCCCCCHHHHHhhcc-cCccEEEEc
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGI-----AQRKQVEVRHFDLLPE-RNWEVDLDAVEALAD-KNTAAMVII  187 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~-----~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~v~l~  187 (301)
                      |+++|+..++.+++++||+|+++.|.|.++...     ++..|.++..+++..+ +++.+|++.+++.+. .++++++++
T Consensus        89 sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~  168 (402)
T cd00378          89 SGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAG  168 (402)
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEec
Confidence            457999999999999999999999999866332     5667877777776543 257899999999885 578888888


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC-cccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY-GHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      +|+||+  ..+   +++|+++|+++|+++|+|++| ..+.+.+....++.    ..+ ++++|+||++  +|.|.||+++
T Consensus       169 ~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~d-v~~~s~sK~l--~G~~gg~i~~  236 (402)
T cd00378         169 ASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GAD-VVTTTTHKTL--RGPRGGLILT  236 (402)
T ss_pred             CcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCc-EEEeccccCC--CCCCceEEEe
Confidence            988764  445   889999999999999999995 44444442222232    122 7899999985  8899999998


Q ss_pred             eCCCCcccchhHHHHHHhhh
Q 022213          267 NDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +++       +++++++...
T Consensus       237 ~~~-------~~~~~l~~~~  249 (402)
T cd00378         237 RKG-------ELAKKINSAV  249 (402)
T ss_pred             ccH-------HHHHHHHHHh
Confidence            552       3777776543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.87  E-value=6.6e-21  Score=174.19  Aligned_cols=164  Identities=20%  Similarity=0.229  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g  152 (301)
                      +..|+.+ ...+|++.+|++.        ..++.+++++++.|+..++.+++++||+|+++...|.    .+...++..|
T Consensus        64 Y~r~~~p-~~~~le~~lA~l~--------g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G  134 (403)
T PRK07810         64 YSRYGNP-TVSMFEERLRLIE--------GAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWG  134 (403)
T ss_pred             eeCCCCc-hHHHHHHHHHHHh--------CCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence            4455554 4678999999997        3458899999999999999999999999999876554    3445667789


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++++++.       .|++.+++++++++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|+...+..   
T Consensus       135 ~~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~---  201 (403)
T PRK07810        135 VETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR---  201 (403)
T ss_pred             cEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence            99998864       4889999999889999999999999999998   8888999999999999999998654432   


Q ss_pred             CCccccCCCCCEEEEecCcccCCCCccee-EEEEee
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTN  267 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~  267 (301)
                       ++ .++.   -+++.|++|.++.+|.++ |+++++
T Consensus       202 -~~-~~ga---Divv~S~tK~l~g~g~~~gG~v~~~  232 (403)
T PRK07810        202 -GL-PLGA---DVVVYSGTKHIDGQGRVLGGAILGD  232 (403)
T ss_pred             -hh-hcCC---cEEEccCCceecCCcCceeEEEEeC
Confidence             11 1122   288999999999899998 666653

>PLN02483 serine palmitoyltransferase

Probab=99.87  E-value=6.5e-21  Score=178.28  Aligned_cols=216  Identities=15%  Similarity=0.144  Sum_probs=149.9

Q ss_pred             CCCeeeccCCCCCCCC--CCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           41 PRPVVPLGYGDPTAFP--CFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p--~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+..+||+..+.--+.  +..+++.+.+++.+.--.  ..-..|++..++.++++.+|+++.       .++.|++++| 
T Consensus        99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G-  170 (489)
T PLN02483         99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMG-  170 (489)
T ss_pred             CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCH-
Confidence            5668899888753221  112234555555443211  122347776788999999999993       2455666665 


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-------cC-----ccEE
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-------KN-----TAAM  184 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-----~~~v  184 (301)
                      +.+...++.+++++||.|++++|+|.++...++..|++++.++.+       |.+.+++.++       ++     .+++
T Consensus       171 ~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~l  243 (489)
T PLN02483        171 YATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKII  243 (489)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEE
Confidence            555668888899999999999999999999999999999988752       3455554432       11     2445


Q ss_pred             EEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          185 VIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       185 ~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      +++.+ .|++|.+.+   +++|+++|++|++++|+||+|+...++.  .....+...+..+..|+++||||+|+++|   
T Consensus       244 ivve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---  317 (489)
T PLN02483        244 VIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---  317 (489)
T ss_pred             EEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---
Confidence            55554 699999988   8899999999999999999998544321  11222222233345699999999999887   


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhh
Q 022213          262 GWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       262 G~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ||++++.        +++++++..
T Consensus       318 G~i~~~~--------~li~~l~~~  333 (489)
T PLN02483        318 GYIAGSK--------ELIQYLKRT  333 (489)
T ss_pred             eEEEcCH--------HHHHHHHHh
Confidence            9998743        588888765

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.87  E-value=7.1e-21  Score=174.08  Aligned_cols=241  Identities=13%  Similarity=0.094  Sum_probs=161.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++||..|.-..+-.. .++.+.+++.++++...  ..+. ....+...++++.+.+..    ..+++++++|++
T Consensus        27 d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGs   98 (389)
T PRK01278         27 DEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLW--HVSN-LYRIPEQERLAERLVENS----FADKVFFTNSGA   98 (389)
T ss_pred             ECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcC--cccc-ccCChHHHHHHHHHHhhC----CCCEEEEcCCcH
Confidence            345888999988632211123 45788899998887421  1111 122344555666665421    346899999999


Q ss_pred             HHHHHHHHHh----cCCCC----EEEEcCCCCcchHHHHHhcCceEEEeec-CC-CCCCC----CCHHHHHhhcccCccE
Q 022213          118 QAVEVILSVL----ARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDL-LP-ERNWE----VDLDAVEALADKNTAA  183 (301)
Q Consensus       118 ~al~~~~~~l----~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~----~~~~~l~~~~~~~~~~  183 (301)
                      +|++.+++.+    .++||    +|++.+++|+++.......+........ .+ ..++.    .|++.+++.+++++++
T Consensus        99 eA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~a  178 (389)
T PRK01278         99 EAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAA  178 (389)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEE
Confidence            9999999877    34676    8999999999886555554433222110 00 11121    5889999998877888


Q ss_pred             EEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE
Q 022213          184 MVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG  262 (301)
Q Consensus       184 v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG  262 (301)
                      +++..++|++| .+++.+.+++|.++|++||+++|+||+|..+.+.+..+ ....++-..+   +.++||.++ +|+|+|
T Consensus       179 vivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l~-~G~~ig  253 (389)
T PRK01278        179 ILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AHEWAGVTPD---IMAVAKGIG-GGFPLG  253 (389)
T ss_pred             EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-eecccCCCCC---EEEEehhcc-CCcceE
Confidence            88887788888 78899999999999999999999999999876655322 2222222223   348999976 899999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          263 WLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |+++++        ++++.+..... ...+.+++.|.+
T Consensus       254 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa  283 (389)
T PRK01278        254 ACLATE--------EAAKGMTPGTHGSTYGGNPLAMAV  283 (389)
T ss_pred             EEEEcH--------HHHhccCCCCCCCCCCccHHHHHH
Confidence            999854        35566554432 233566676654

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.87  E-value=1.6e-20  Score=171.12  Aligned_cols=165  Identities=13%  Similarity=0.180  Sum_probs=127.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g  152 (301)
                      +.+|+.+ ...+|++.+|+++.        .+..+++++++.++..++.+++++||+|+++.|.|......+    ...|
T Consensus        55 y~r~~~p-t~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g  125 (386)
T PRK06767         55 YSRLGNP-TVKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM  125 (386)
T ss_pred             ccCCCCc-chHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence            4445543 46899999999982        245666667778999999999999999999999888654443    3346


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++.+++.       .|++.+++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|....+..   
T Consensus       126 i~~~~~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~---  192 (386)
T PRK06767        126 ITHSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR---  192 (386)
T ss_pred             eEEEEeCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence            66555543       4789999999888999999999999999999   7888888999999999999997533321   


Q ss_pred             CCccccCCCCCEEEEecCcccCCCCccee-EEEEeeC
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTND  268 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~  268 (301)
                       ++. .+.   .+++.|+||.++++|.|+ ||+++++
T Consensus       193 -pl~-~g~---Div~~S~sK~l~g~g~~~gG~v~~~~  224 (386)
T PRK06767        193 -PLE-LGC---DAVVHSATKYIGGHGDVVAGVTICKT  224 (386)
T ss_pred             -chh-cCC---cEEEecCcceecCCCCceeEEEEeCh
Confidence             121 111   278889999999999986 8888743

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=1.6e-20  Score=171.17  Aligned_cols=174  Identities=15%  Similarity=0.188  Sum_probs=134.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV  153 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~  153 (301)
                      ..|+.+ ....|++.+|++..        .+..+++++++.|+..++.+++++||+|+++.|.|...    ...+...|+
T Consensus        54 ~r~~~p-~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        54 SRLGNP-TVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             eCCCCc-hHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            344443 46789999999982        34578888889999999999999999999999988643    344456788


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~  233 (301)
                      ++.++++.       |++.+++.+++++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|.......    
T Consensus       125 ~~~~vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~----  190 (391)
T TIGR01328       125 QVDFINMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN----  190 (391)
T ss_pred             EEEEECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC----
Confidence            88888752       788999999888999999999999999999   8888888999999999999998644321    


Q ss_pred             CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ++. ...   -+++.|+||.++++|.++|.+++.+       ++++++++..
T Consensus       191 ~~~-~g~---Divv~S~sK~lgg~g~~~gG~v~~~-------~~li~~l~~~  231 (391)
T TIGR01328       191 PVA-LGV---DVVVHSATKYIGGHGDVVAGLICGK-------AELLQQIRMV  231 (391)
T ss_pred             chh-cCC---CEEEccccccccCCCCceEEEEEcC-------HHHHHHHHHH
Confidence            121 111   2888999999999998865444433       2467777653

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=1.3e-20  Score=171.90  Aligned_cols=185  Identities=18%  Similarity=0.190  Sum_probs=140.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g  152 (301)
                      +..|+.+ ...+|++.++++.        ..+++++++|+++|+..++.+++++||+|+++.|.|..+..    .+...|
T Consensus        59 Y~r~~~p-t~~~Le~~lA~l~--------g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~G  129 (394)
T PRK07050         59 YGLHATP-TSLALAQRLAEIE--------GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFG  129 (394)
T ss_pred             cCCCCCH-HHHHHHHHHHHHh--------CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcC
Confidence            4444443 4578888888886        35689999999999999999999999999999999998653    456789


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++.+++.       .+.+.+++.+++++++|++++|+||+|...+   +++|+++|+++|+++|+|++|....+.    
T Consensus       130 i~v~~vd~-------~~~~~l~~~i~~~tklV~le~p~Np~~~~~d---i~~I~~ia~~~gi~livD~a~a~~~~~----  195 (394)
T PRK07050        130 ITVRFYDP-------LIGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAARARGVVTAIDNTYSAGLAF----  195 (394)
T ss_pred             eEEEEECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccHhh---HHHHHHHHHHcCCEEEEECCccccccc----
Confidence            99888763       1447788889889999999999999976554   999999999999999999999863321    


Q ss_pred             CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTF  295 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  295 (301)
                      .++. ++   -.|++.|+||.++. .+.+.|++++.++       ++.++++.... .+.+.+++
T Consensus       196 ~~l~-~G---aDi~v~S~tK~~~g~~~~~gG~v~~~~~-------~~~~~~~~~~~~~G~~~~~~  249 (394)
T PRK07050        196 KPFE-HG---VDISVQALTKYQSGGSDVLMGATITADA-------ELHAKLKLARMRLGIGVSAD  249 (394)
T ss_pred             CHHH-cC---CeEEEEECCceecCCCCeeEEEEEECCH-------HHHHHHHHHHHhcCCCCCHH
Confidence            1111 11   23899999999764 5567899887543       46677765544 23344443

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=5.8e-21  Score=175.18  Aligned_cols=234  Identities=17%  Similarity=0.108  Sum_probs=156.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSGK--FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ..+++.+|+|..|.+..  .++. ++.+.+++.++++...  ...|....+ .+|.+.++++    .+. .+++++++++
T Consensus        39 d~dg~~~lD~~s~~~~~--~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~----~~~-~~~~~v~~~~  110 (398)
T PRK03244         39 DVDGKEYLDLLGGIAVN--ALGHAHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVEL----LGA-PEGGRVFFCN  110 (398)
T ss_pred             ECCCCEEEECCcCHhhc--cCCCCCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHh----CCC-CCCCEEEEeC
Confidence            34688899999885432  2343 6889999998887522  223544322 3444444444    331 2357999999


Q ss_pred             CHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCCCCHHHHHhhcccC
Q 022213          115 GCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWEVDLDAVEALADKN  180 (301)
Q Consensus       115 g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (301)
                      |+++|+..+++.+..+| +.|+..+++|+++....... +..            +..++.       .|++.+++.+.++
T Consensus       111 sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~  183 (398)
T PRK03244        111 SGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDD  183 (398)
T ss_pred             chHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCC
Confidence            99999999999877666 56777788998774333322 211            111111       3788999888767


Q ss_pred             ccEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          181 TAAMVIINPGNPCGNVFTYHH-LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      ++++++..++||+|.+++.++ +++|.++|++||+++|+||+|..+.+.+..+ .+...+-..+++   +|||.++ +|+
T Consensus       184 ~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pDi~---t~sK~l~-~G~  258 (398)
T PRK03244        184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AHQHDGVTPDVV---TLAKGLG-GGL  258 (398)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hhhhhCCCCCEE---EEchhhh-CCc
Confidence            888888888999999987655 9999999999999999999998866554322 112222223443   8899987 899


Q ss_pred             eeEEEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          260 RFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       260 rvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      |+||+++++        ++++.+.... ....+.+++.|.+
T Consensus       259 ~ig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa  291 (398)
T PRK03244        259 PIGACLAFG--------PAADLLTPGLHGSTFGGNPVACAA  291 (398)
T ss_pred             ccEEEEEcH--------HHHhhccCCCCcCCCCCCHHHHHH
Confidence            999999854        3666665422 1222455565544

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.86  E-value=1.2e-20  Score=170.78  Aligned_cols=187  Identities=18%  Similarity=0.194  Sum_probs=138.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g  152 (301)
                      +.+|+.+ ...+|++.+|++..        .+..++++|+++++..++ .++++||+|+++.|.|.+.    ...++..|
T Consensus        46 y~r~~~p-t~~~le~~la~l~g--------~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G  115 (366)
T PRK08247         46 YSRTGNP-TRGVLEQAIADLEG--------GDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWN  115 (366)
T ss_pred             ccCCCCc-hHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence            4445553 46789999999982        234578888899998876 5778999999999999874    33445689


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++.+++.       .|++.+++.+++++++|++++|+||+|.   ..++++|+++|+++|+++|+|++|.......   
T Consensus       116 ~~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~---  182 (366)
T PRK08247        116 VRFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR---  182 (366)
T ss_pred             ceEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccccC---
Confidence            99988865       4889999999888999999999999865   4559999999999999999999996433221   


Q ss_pred             CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                       ++.    .+..|+++|+||.++.+ +.+.||+++++.       ++.++++.... ...+.+++.|.
T Consensus       183 -p~~----~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~  238 (366)
T PRK08247        183 -PLE----EGADIVIHSATKYLGGHNDVLAGLVVAKGQ-------ELCERLAYYQNAAGAVLSPFDSW  238 (366)
T ss_pred             -chh----cCCcEEEeecceeccCCCceeeeEEecChH-------HHHHHHHHHHHhcCCCCChHHHH
Confidence             121    12349999999998763 679999987532       46666665543 23345555554

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.86  E-value=4.6e-20  Score=167.35  Aligned_cols=194  Identities=21%  Similarity=0.335  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      +...+++.+++.++..  ++    ...+++++++++.+..    ..+++++|+|+++|+.+++.++ ++|||+|+++.++
T Consensus        11 ~~e~~a~~~~~~~~~~--~~----~g~~~~~~e~~la~~~----g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t   80 (376)
T TIGR02379        11 GQELEYIAEAISEGKL--SG----DGPFSRRCETWLENRT----GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYT   80 (376)
T ss_pred             HHHHHHHHHHHHcCCc--cC----CcHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence            4557788888875432  21    1245555555555432    4568999999999999999988 7899999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |..+...+...|++++++++++ +++.+|++.+++.+++++++|+   |+||+|...+   +++|.++|+++|++||+|+
T Consensus        81 ~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDa  153 (376)
T TIGR02379        81 FVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDA  153 (376)
T ss_pred             cHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEEC
Confidence            9998888889999999999865 3477999999999988888876   6778999998   7888999999999999999


Q ss_pred             CCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          221 VYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       221 ~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +|+... +.+...   ..+..    +.+.||  +|.+ .+|.+.|+++.+++       ++.++++.+.+
T Consensus       154 a~~~g~~~~~~~~---g~~~~----~~~fSf~~~K~l-~~g~~gG~v~~~~~-------~~~~~~~~~~~  208 (376)
T TIGR02379       154 AQGVMSTYKGRAL---GSIGH----LGTFSFHETKNY-TSGGEGGALLINDQ-------AFIERAEIIRE  208 (376)
T ss_pred             ccccCCccCCccc---CCCCC----EEEEeCCCCCcC-cccCCceEEEECCH-------HHHHHHHHHHH
Confidence            998765 444322   22211    333343  3664 56778999988653       57777777654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=99.86  E-value=3.7e-21  Score=163.75  Aligned_cols=276  Identities=16%  Similarity=0.191  Sum_probs=198.9

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCC-CCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAF-PCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~-p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .+.++|+++|.++++.+-+    ...+..|||+.|...-. ...-..+.|++|-++.+......+|.|..|++++.+..+
T Consensus        30 ~V~maPpDpILGVTeAfk~----D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sa  105 (427)
T KOG1411|consen   30 HVEMAPPDPILGVTEAFKK----DPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSA  105 (427)
T ss_pred             cCCCCCCCCcccHHHHHhc----CCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHH
Confidence            4668999999999985543    34678899999944211 111234567777666655444558999999999999999


Q ss_pred             HHHhhhCCCCCCCCCEEE--cCCHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           95 DYLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      +++-......+..++|+.  |-++|.++......+.  -++..|.+|+|+|.+...++..+|+.+.++..-.....++|.
T Consensus       106 kLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~  185 (427)
T KOG1411|consen  106 KLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDF  185 (427)
T ss_pred             HHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccch
Confidence            999553333344556644  5566777777666664  378899999999999999999999999888876666778999


Q ss_pred             HHHHhhcccCcc-EEEEc--CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCccccCC-CCCE
Q 022213          171 DAVEALADKNTA-AMVII--NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLFGS-IVPV  244 (301)
Q Consensus       171 ~~l~~~~~~~~~-~v~l~--~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~~~-~~~v  244 (301)
                      +.+.+.+++.+. .+++.  ..|||||+-.+.++|++|.++.++.+.+-+.|-+|..|.-++.  ...++..+.. ..++
T Consensus       186 ~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~  265 (427)
T KOG1411|consen  186 KGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEI  265 (427)
T ss_pred             HHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCce
Confidence            887777765332 23444  3499999999999999999999999999999999999876532  1222223322 3468


Q ss_pred             EEEecCcccCCCCcceeEEE--EeeCCCCcccchhHHHHHHhh-hcccCCCcccccc
Q 022213          245 ITLGSISKRWLVPGWRFGWL--VTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQV  298 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~  298 (301)
                      +++.|+.|.+|+.|-|+|.+  ++.+.+..   .++.++++.+ +.+.+++|.....
T Consensus       266 ~laQSyAKNMGLYgERvGa~svvc~~ad~A---~rV~SQlk~liRpmYSnPP~hGAr  319 (427)
T KOG1411|consen  266 LLAQSYAKNMGLYGERVGALSVVCKDADEA---KRVESQLKILIRPMYSNPPLHGAR  319 (427)
T ss_pred             EeehhhhhhcchhhhccceeEEEecCHHHH---HHHHHHHHHHhcccccCCCccchh
Confidence            99999999999999999996  44443321   2355566665 3466666654433

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.86  E-value=2.3e-20  Score=171.18  Aligned_cols=192  Identities=15%  Similarity=0.119  Sum_probs=143.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR  138 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~  138 (301)
                      ..++.+.+++.+.+    . .|.. .+..++++++.+.+.+.++.+ ..+.++++++++++++.++..++++||+|++++
T Consensus        19 ~~~~~V~~a~~~~~----~-~~~~-~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~   91 (401)
T PLN02409         19 NIPERVLRAMNRPN----E-DHRS-PAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR   91 (401)
T ss_pred             CCCHHHHHHhcCCC----C-CCCC-HHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence            45566766664432    2 2322 356778888888887776643 234688899999999999999999999999999


Q ss_pred             CCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          139 PGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       139 p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      ++|++.  ...++..|.+++.++.+..  ..++++.+++.+++    +++++++++++||||.+++.+++.++++ |+++
T Consensus        92 ~~~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~  168 (401)
T PLN02409         92 IGQFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH  168 (401)
T ss_pred             CCchhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhcc
Confidence            988754  4667888999999987543  34789999999875    6899999999999999999665555555 9999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |+++|+|++++.    +..+..+..++-+   +++.|.+|++++|. ++||++++.
T Consensus       169 g~~~vvD~v~s~----g~~~id~~~~~~D---~~~~s~~K~l~~P~-G~G~l~~~~  216 (401)
T PLN02409        169 PALLLVDGVSSI----GALDFRMDEWGVD---VALTGSQKALSLPT-GLGIVCASP  216 (401)
T ss_pred             CcEEEEEccccc----CCccccccccCcc---EEEEcCccccCcCC-CcceeEECH
Confidence            999999999874    2222223333222   77778899987654 699999854

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.86  E-value=4.6e-20  Score=167.72  Aligned_cols=190  Identities=21%  Similarity=0.235  Sum_probs=142.5

Q ss_pred             CChHHHHHHHHHHHhcCCCC-CCCC-------CCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHHHHHHHHHhcC
Q 022213           59 RTAVEAEDAIVDAVRSGKFN-CYAT-------NSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLAR  129 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~-~Y~~-------~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l~~  129 (301)
                      ++|+.+.+++.+.+...... ..+.       .....++|+.+++++      +.+ ++++++|+|+++++..++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~v~~~~g~t~a~~~~~~~l~~   83 (373)
T cd06453          10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI------NAPSPDEIIFTRNTTEAINLVAYGLGR   83 (373)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            44567888887776432100 0000       112457888888887      334 67999999999999999999987


Q ss_pred             ---CCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          130 ---PGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       130 ---~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                         +||+|+++++.|.+.    ...++..|.+++.++.+  .++.+|++.+++.++++++++++++|+||||.+.+   +
T Consensus        84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~  158 (373)
T cd06453          84 ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---V  158 (373)
T ss_pred             cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---H
Confidence               899999999999874    33445779999999875  34569999999999888999999999999999999   7


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++|+++|+++|+++++|++|.....    +..+..+..   .+++.|++|.++.  .++||+++++
T Consensus       159 ~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~---d~~~~s~~K~~~~--~g~g~~~~~~  215 (373)
T cd06453         159 KEIGEIAHEAGVPVLVDGAQSAGHM----PVDVQDLGC---DFLAFSGHKMLGP--TGIGVLYGKE  215 (373)
T ss_pred             HHHHHHHHHcCCEEEEEhhhhcCce----eeeccccCC---CEEEeccccccCC--CCcEEEEEch
Confidence            8888889999999999999875221    112222222   2677899999775  5689998854

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.86  E-value=3e-20  Score=168.57  Aligned_cols=170  Identities=18%  Similarity=0.208  Sum_probs=136.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~  159 (301)
                      ....+|++.++++.        ..+..++++++++|+..++.+++++||+|+++.+.|.+...    .+...|+++.+++
T Consensus        40 p~~~~le~~la~l~--------g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~  111 (369)
T cd00614          40 PTVDALEKKLAALE--------GGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVD  111 (369)
T ss_pred             hhHHHHHHHHHHHH--------CCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeC
Confidence            35678999999887        23578888999999999999999999999999999987543    3446788888876


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .       .+++.+++.+++++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|++|+...+.    .++ .+ 
T Consensus       112 ~-------~d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~----~~~-~~-  175 (369)
T cd00614         112 P-------DDPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ----RPL-EL-  175 (369)
T ss_pred             C-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC----Chh-hh-
Confidence            5       2588999999888999999999999999999   888899999999999999999865431    111 11 


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                        +..+++.|+||.++.+| .+.||+++++.       +++++++...
T Consensus       176 --g~Divv~S~tK~l~g~~~~~gG~v~~~~~-------~l~~~l~~~~  214 (369)
T cd00614         176 --GADIVVHSATKYIGGHSDVIAGVVVGSGE-------ALIQRLRFLR  214 (369)
T ss_pred             --CCcEEEeccceeccCCCCceEEEEEeCcH-------HHHHHHHHHH
Confidence              12388999999998776 88999997542       3667776654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.86  E-value=3.3e-20  Score=167.66  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=138.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      .+.++.+.+++.+.+..   ..|... .-..++++.+++++    |  +++ +.+++++|+++++..++.+++++||+|+
T Consensus         8 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~----g--~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl   78 (356)
T cd06451           8 SNVPPRVLKAMNRPMLG---HRSPEFLALMDEILEGLRYVF----Q--TENGLTFLLSGSGTGAMEAALSNLLEPGDKVL   78 (356)
T ss_pred             cCCCHHHHHHhCCCccC---CCCHHHHHHHHHHHHHHHHHh----c--CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEE
Confidence            45667787877544321   122221 01345666666666    3  334 3578899899999999999999999999


Q ss_pred             EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      ++.++|.+  +...++..|.+++.++.+.  .+.+|++.+++.+++ +++++++++|+||+|.+.+   +++|.++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~  153 (356)
T cd06451          79 VGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH  153 (356)
T ss_pred             EecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc
Confidence            99888765  4567788899999998754  356899999999986 8899999999999999999   77788889999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |+++++|++|+.   +. .+..+..++.  + +++.|++|+++.| .++||+++++
T Consensus       154 ~~~li~D~~~~~---g~-~~~~~~~~~~--d-~~~~s~~K~l~~p-~g~G~l~~~~  201 (356)
T cd06451         154 DALLIVDAVSSL---GG-EPFRMDEWGV--D-VAYTGSQKALGAP-PGLGPIAFSE  201 (356)
T ss_pred             CCEEEEeeehhc---cC-ccccccccCc--c-EEEecCchhccCC-CCcceeEECH
Confidence            999999998863   11 1222222221  2 6677899998765 3689999853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.86  E-value=4.6e-20  Score=167.86  Aligned_cols=174  Identities=24%  Similarity=0.334  Sum_probs=135.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCc
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQV  153 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~  153 (301)
                      .+|+.+ ...+|++.+++++        ..+++++++++++|+..++.+++++||+|+++.+.|.+.    ...+...|+
T Consensus        49 ~r~~~p-~~~~le~~la~l~--------g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        49 SRYANP-TVAAFEERIAALE--------GAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             ecCCCc-hHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence            345443 4678999999987        235788999999999999999999999999999888653    345667899


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~  233 (301)
                      ++.+++.       .|++.+++.+++++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|....+..    
T Consensus       120 ~v~~v~~-------~d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~----  185 (380)
T TIGR01325       120 EVSFVDP-------TDLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ----  185 (380)
T ss_pred             EEEEECC-------CCHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence            9888875       2688999988888999999999999999998   8888888999999999999998654321    


Q ss_pred             CccccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhh
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ++ .++   ..|++.|+||.++.+|.++ |++++ +.       +++++++...
T Consensus       186 pl-~~g---~Divv~S~sK~l~g~g~~~gG~vv~-~~-------~~~~~l~~~~  227 (380)
T TIGR01325       186 PL-KLG---ADVVVYSATKHIDGQGRVMGGVIAG-SE-------ELMAEVAVYL  227 (380)
T ss_pred             ch-hhC---CCEEEeeccceecCCCCeEEEEEEe-CH-------HHHHHHHHHH
Confidence            12 122   2388889999999999888 55554 32       3666666543

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=2.9e-20  Score=169.06  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=132.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH---HhcCceEEEeecC
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLL  161 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~  161 (301)
                      ...+|++.+|+++        ..+++++++|++.|+..++.+++++||+|+++.|.|.++...+   ...|+++.+++  
T Consensus        54 ~~~~lE~~lA~l~--------g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~--  123 (385)
T PRK08574         54 TLRPLEEALAKLE--------GGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY--  123 (385)
T ss_pred             cHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC--
Confidence            5789999999998        3468888999999999999999999999999999999876555   44577766543  


Q ss_pred             CCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                            ++.+.+++.+++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+.....    .++ .++ 
T Consensus       124 ------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~----~~l-~~G-  188 (385)
T PRK08574        124 ------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY----RPL-RHG-  188 (385)
T ss_pred             ------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----Chh-hhC-
Confidence                  467899999987 8999999999999999999   788899999999999999999653221    122 122 


Q ss_pred             CCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          241 IVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                        ..+++.|+||.++.+|-.+ |++++.+.       ++.++++....
T Consensus       189 --aDivv~S~sK~l~g~~d~~gG~vi~~~~-------~~~~~~~~~~~  227 (385)
T PRK08574        189 --ADFVVHSLTKYIAGHNDVVGGVAVAWSG-------EFLEELWEWRR  227 (385)
T ss_pred             --CcEEEeeCceeecCCCCceeEEEEECcH-------HHHHHHHHHHH
Confidence              2389999999998887665 66666442       46666655443

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.86  E-value=1.2e-19  Score=164.24  Aligned_cols=196  Identities=16%  Similarity=0.171  Sum_probs=147.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      -+++||-+.-... ...-.+|+++.+++.+..+     .|.   +..++++++.+++.+.+|    .+++++|+|+|+|+
T Consensus         7 ~~~~ina~g~~t~-~g~s~~~~~v~~a~~~~~~-----~~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al   73 (363)
T TIGR01437         7 LKKVINASGKMTI-LGVSTVSDEVADAQKRGAQ-----NYF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGI   73 (363)
T ss_pred             CceEEECCcEeec-CCCCCCCHHHHHHHHHHHh-----cCC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHH
Confidence            3566666443211 1122367899999988865     243   346778888887777554    35899999999999


Q ss_pred             HHHHHHhcCCCC---------------EEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213          121 EVILSVLARPGA---------------NVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT  181 (301)
Q Consensus       121 ~~~~~~l~~~gd---------------~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  181 (301)
                      .+++.+++++||               .|+++.|.|..|    ...+...|.++++++.    .+.+|++.+++++++++
T Consensus        74 ~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai~~~t  149 (363)
T TIGR01437        74 AQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAITEKT  149 (363)
T ss_pred             HHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhcChhc
Confidence            999999999998               999999888765    4677788999999876    23599999999999889


Q ss_pred             cEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          182 AAMV-IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       182 ~~v~-l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      ++++ +++|+||+|.+.+   +++|+++|++||+++|+|++|..      ....+..++.   -++++|++|.+  +|++
T Consensus       150 ~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~g~---D~~~~S~~K~l--~gp~  215 (363)
T TIGR01437       150 AAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRLGA---DLVIYSGAKAI--EGPT  215 (363)
T ss_pred             eEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHcCC---CEEEEeCCccc--CCCc
Confidence            8765 5788999999999   77889999999999999999972      1111112222   27889999974  6778


Q ss_pred             eEEEEee
Q 022213          261 FGWLVTN  267 (301)
Q Consensus       261 vG~~~~~  267 (301)
                      .|+++++
T Consensus       216 ~G~l~~~  222 (363)
T TIGR01437       216 SGLVLGK  222 (363)
T ss_pred             eEEEEEc
Confidence            9998863

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK06460 hypothetical protein; Provisional

Probab=99.85  E-value=4.5e-20  Score=167.51  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=126.2

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc----chHHHHHhcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP----YYEGIAQRKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~~~  159 (301)
                      ....+|++.+|+++.      .+ ..+++ +++++++..++.+++++||+|+++.|.|.    .+...++..|+++..++
T Consensus        45 p~~~~L~~~lA~l~g------~~-~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~  116 (376)
T PRK06460         45 PTVLELTKKIVELEN------AE-MGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASN  116 (376)
T ss_pred             ccHHHHHHHHHHHhC------CC-cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEEC
Confidence            467899999999982      22 34444 55679999999999999999999987654    44566778899988776


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      ..       +.+.+++.++++++++++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ..++   .
T Consensus       117 ~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~----~~~l---~  179 (376)
T PRK06460        117 PG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPIN----QKPL---E  179 (376)
T ss_pred             CC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcccc----CChh---h
Confidence            42       234455555668899999999999999999   56788888999999999999975321    1111   1


Q ss_pred             CCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          240 SIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       .+..|++.|+||.++.. |.|+||++++        ++++++++....
T Consensus       180 -~~~divv~S~sK~l~G~~~~~~G~~~~~--------~~l~~~l~~~~~  219 (376)
T PRK06460        180 -LGADIVVHSASKFLAGHNDVIAGLAAGY--------GKLLNVIDQMRR  219 (376)
T ss_pred             -cCCCEEEeecceeccCCCCceEEEEecC--------HHHHHHHHHHHH
Confidence             12349999999998643 4789999863        247777766543

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.85  E-value=1.2e-19  Score=165.22  Aligned_cols=192  Identities=17%  Similarity=0.184  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      +.-.+++.+.+.++.+ .+++  ...+|++++++++.        .+++++++|+++|+.+++.++ +++||+|+++.++
T Consensus        14 ~~e~~~~~~~l~~~~~-~~g~--~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~   82 (379)
T PRK11658         14 DEELAAVKEVLRSGWI-TTGP--KNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLT   82 (379)
T ss_pred             HHHHHHHHHHHHcCCc-cCCH--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence            4446777777775543 2333  57899999999982        346888999999999999999 7999999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |..+...+...|++++.+++++ +++.+|++.+++.+++++++++   |+|++|...+   +++|.++|+++|+++|+|+
T Consensus        83 ~~~~~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~  155 (379)
T PRK11658         83 WVSTLNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDA  155 (379)
T ss_pred             HHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEEC
Confidence            9999888899999999999864 3467899999999988888876   6667999988   7888899999999999999


Q ss_pred             CCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          221 VYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       221 ~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +++. ..+.+..   +..+   +  +.+.||++...+++.+.|+++..++       ++.++++...
T Consensus       156 a~a~g~~~~~~~---~g~~---g--~~~~Sf~~~K~l~~g~GG~v~~~~~-------~~~~~~~~~~  207 (379)
T PRK11658        156 AHAVGTYYKGRH---IGAR---G--TAIFSFHAIKNITCAEGGLVVTDDD-------ELADRLRSLK  207 (379)
T ss_pred             CCccCCeECCee---cCCC---C--CEEEeCCCCCcCcccCceEEEECCH-------HHHHHHHHHH
Confidence            9985 3333221   2221   2  2345666555567778898886543       4677776654

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=1.2e-19  Score=167.09  Aligned_cols=159  Identities=17%  Similarity=0.205  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~  160 (301)
                      ....|.+.+|++.        ..+..++++|++.|+..++.+++++||+|+++.+.|.+.    ...++..|+++++++.
T Consensus        65 ~~~~Le~~lA~le--------g~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~  136 (431)
T PRK08248         65 TTDVFEKRIAALE--------GGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP  136 (431)
T ss_pred             hHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence            3567888888887        346889999999999999999999999999999998753    3445678999998875


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..-    ....++ .++ 
T Consensus       137 -------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~----~~~~pl-~~g-  200 (431)
T PRK08248        137 -------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP----YLLRPI-EHG-  200 (431)
T ss_pred             -------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc----ccCChh-HcC-
Confidence                   4789999999888999999999999999999   778889999999999999998731    112222 222 


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                        ..+++.|++|.++.+|.++|++++.+.
T Consensus       201 --aDivv~S~tK~lgg~g~~~Gg~v~~~~  227 (431)
T PRK08248        201 --ADIVVHSATKFIGGHGTSIGGVIVDSG  227 (431)
T ss_pred             --CCEEEEcCccccCCCCCceEEEEEeCC
Confidence              238899999999999999999887543

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.85  E-value=4.9e-20  Score=169.76  Aligned_cols=225  Identities=18%  Similarity=0.161  Sum_probs=153.2

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .++..+|+|..|....  .+. .++.+.+++.+++...  ..|....+..++...+++.+.+.++  .+.+++++++|++
T Consensus        33 ~dG~~~id~~~~~~~~--~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgs  106 (413)
T cd00610          33 VDGNRYLDFLSGIGVL--NLGHNHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGT  106 (413)
T ss_pred             CCCCEEEEcCccHHhh--ccCCCCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHH
Confidence            4688999999874321  133 6788999999988643  3454433455666666666666544  2578999999999


Q ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCC----CCCCCCHHHHHhhcc
Q 022213          118 QAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPE----RNWEVDLDAVEALAD  178 (301)
Q Consensus       118 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~~~~~l~~~~~  178 (301)
                      +|+..+++.+.  .++|+|++.+++|+++.......+             .++..++.+..    ..+..|++.+++.++
T Consensus       107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  186 (413)
T cd00610         107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE  186 (413)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence            99999999884  578999999999998644333322             12444544311    123448889998886


Q ss_pred             c--CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213          179 K--NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       179 ~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  254 (301)
                      +  +...++++.| ++++|.++ +.+.+++|.++|++|++++|+||+|..+...+.. .....++...+   +.|+||.+
T Consensus       187 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~-~~~~~~~~~~d---~~t~sK~l  262 (413)
T cd00610         187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM-FAFEHFGVEPD---IVTLGKGL  262 (413)
T ss_pred             cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch-hhHhhcCCCCC---eEEEcccc
Confidence            5  2344555555 66779876 6778999999999999999999999976443321 11222222223   34889998


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSI  282 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~  282 (301)
                      +. |+|+||++++.        ++++.+
T Consensus       263 ~~-g~~~g~~~~~~--------~~~~~~  281 (413)
T cd00610         263 GG-GLPLGAVLGRE--------EIMDAF  281 (413)
T ss_pred             cC-ccccEEEEEcH--------HHHHhh
Confidence            76 89999998742        466665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.84  E-value=3.6e-19  Score=163.56  Aligned_cols=200  Identities=17%  Similarity=0.195  Sum_probs=147.5

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHh--cCC--CCCCCC------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVR--SGK--FNCYAT------NSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~--~~~--~~~Y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      |-|+.+...     ++|+.+.+++.+.+.  ...  ......      .....++|+.+++++      +.++++|++++
T Consensus         5 iyld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------g~~~~~v~~~~   73 (404)
T PRK14012          5 IYLDYSATT-----PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI------GADPREIVFTS   73 (404)
T ss_pred             EEecCcCCC-----CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc------CcCcCeEEEeC
Confidence            566666532     456778888887764  111  000000      112456778888887      45678899999


Q ss_pred             CHHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHHH---HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213          115 GCKQAVEVILSVLA----RPGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII  187 (301)
Q Consensus       115 g~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  187 (301)
                      |+|+++..++.++.    ++||+|+++.+.|+++...+   +..|++++.++.++  ++.+|++.+++.+++++++++++
T Consensus        74 g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~  151 (404)
T PRK14012         74 GATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSIM  151 (404)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEE
Confidence            99999999988774    68999999999998764333   44699999988753  45689999999999899999999


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +++||||.+++   +++|.++|+++|+++|+|++++.-    ..+..+...+.+   +++.|++|.++ |+ ++|+++++
T Consensus       152 ~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g----~~~~~~~~~~~D---~~~~s~~K~~g-p~-g~G~l~~~  219 (404)
T PRK14012        152 HVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVG----KVPIDLSKLKVD---LMSFSAHKIYG-PK-GIGALYVR  219 (404)
T ss_pred             CcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcC----CcccCcccCCCC---EEEEehhhccC-CC-ceEEEEEe
Confidence            99999999998   788899999999999999999752    222223322222   77779999754 54 69999887


Q ss_pred             CC
Q 022213          268 DP  269 (301)
Q Consensus       268 ~~  269 (301)
                      +.
T Consensus       220 ~~  221 (404)
T PRK14012        220 RK  221 (404)
T ss_pred             cC
Confidence            64

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.84  E-value=3.7e-20  Score=162.98  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=130.6

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN  165 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  165 (301)
                      +.++++.+|+++.      . .+.+++++|+++++..++.+++++||+|+++.++|.+....+...|.++++++......
T Consensus        61 i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~  133 (294)
T cd00615          61 IKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPY  133 (294)
T ss_pred             HHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcc
Confidence            5788899999882      2 23455599999999999999999999999999999998888888999999887654433


Q ss_pred             ----CCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCcccc
Q 022213          166 ----WEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLF  238 (301)
Q Consensus       166 ----~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~  238 (301)
                          ..++++.+++.+++  +++++++++| |++|.+++   +++|+++|+++|+++|+|++|+. +.|.+..+..... 
T Consensus       134 ~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~-  208 (294)
T cd00615         134 YGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM-  208 (294)
T ss_pred             cCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh-
Confidence                36899999998864  5788899998 78999998   88999999999999999999975 3343321211111 


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                        .+..+++.|++|+  ++|++.|+++..
T Consensus       209 --~~~div~~S~hK~--l~g~~~~~~l~~  233 (294)
T cd00615         209 --AGADIVVQSTHKT--LPALTQGSMIHV  233 (294)
T ss_pred             --cCCcEEEEchhcc--cchHhHHHHHHh
Confidence              2345999999998  478887666543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.84  E-value=2.5e-19  Score=164.53  Aligned_cols=213  Identities=18%  Similarity=0.155  Sum_probs=148.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++++++|+..+.   -.+..++.+.+++.++++.....      .|+......+|++.+++++    +    .+..++++
T Consensus        44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~----g----~~~~l~~~  112 (402)
T TIGR01821        44 AKDVTVWCSNDY---LGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLH----G----KESALVFT  112 (402)
T ss_pred             CeeEEEeEccCc---CCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHh----C----CCeEEEEC
Confidence            367899998884   35778889999999988742210      1222223456777777776    2    24566677


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~  188 (301)
                      ++++++..++..+..  +++.|+.....|......+...|.++..++.       .|.+.+++.++    .+++++++++
T Consensus       113 sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~  185 (402)
T TIGR01821       113 SGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFES  185 (402)
T ss_pred             chHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcC
Confidence            779999999988875  6777777766666666666777777655432       36667776664    2567889999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+||+|.+.+   +++|.++|++||+++|+||+|....++..........+. ....|+++||||.|+++|   ||++++
T Consensus       186 ~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~  259 (402)
T TIGR01821       186 VYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAAS  259 (402)
T ss_pred             CCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecC
Confidence            9999999999   888889999999999999999854443211111111111 123588899999999988   998864


Q ss_pred             CCCCcccchhHHHHHHhh
Q 022213          268 DPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~  285 (301)
                      .        ++++.++..
T Consensus       260 ~--------~~~~~l~~~  269 (402)
T TIGR01821       260 R--------KLIDAIRSY  269 (402)
T ss_pred             H--------HHHHHHHHh
Confidence            3        477777654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.84  E-value=1.5e-19  Score=165.03  Aligned_cols=193  Identities=15%  Similarity=0.141  Sum_probs=142.8

Q ss_pred             CChHHHHHHHHHHHhcC-----CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-----
Q 022213           59 RTAVEAEDAIVDAVRSG-----KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-----  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-----  128 (301)
                      ++++.+.+++.+.+...     ..+.|+. .+...+++++++++.. .+. .++++|++|+|+++++..+++++.     
T Consensus        10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~~-~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~   86 (382)
T TIGR03403        10 MLDPKVKELMDPFFCDIYGNPNSLHQFGT-ATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEIL   86 (382)
T ss_pred             CCCHHHHHHHHHHHHhcCcCCccccHHHH-HHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence            34567888888877531     1223332 3456788888888753 221 267899999999999999999762     


Q ss_pred             CC-CCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213          129 RP-GANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE  204 (301)
Q Consensus       129 ~~-gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  204 (301)
                      ++ +|+|+++...|+++.   ..++..|.+++.++++.  ++.+|++.+++.++++++++++++|+||||.+++   +++
T Consensus        87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~  161 (382)
T TIGR03403        87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWANNETGMIFP---IKE  161 (382)
T ss_pred             cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHH
Confidence            45 478999987776553   34566899999998753  3468999999999888999999999999999999   778


Q ss_pred             HHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |.++|+++|+++++|+++...    ..+..+..+.-  + +++.|++|.++.+|  +|++++..
T Consensus       162 I~~la~~~g~~~ivD~a~~~g----~~~~~~~~~~~--D-~~~~s~~K~~gp~G--~g~l~vr~  216 (382)
T TIGR03403       162 IGEICKERGVLFHTDAVQAIG----KIPVDVQKAGV--D-FLSFSAHKFHGPKG--VGGLYIRK  216 (382)
T ss_pred             HHHHHHHcCCEEEEechhhcC----CCccCccccCC--C-EEEEcchhhCCCCc--eEEEEECC
Confidence            888899999999999998742    12222222222  2 88899999887777  57777654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=8.3e-19  Score=159.57  Aligned_cols=204  Identities=23%  Similarity=0.278  Sum_probs=160.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCC--CCCCCC----CCHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFN--CYATNS----GIPPARRAIADYLSRDLPYKLS-ADDVY  111 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~--~Y~~~~----g~~~lr~~ia~~l~~~~~~~~~-~~~i~  111 (301)
                      +.+++.|..+.-     -..|..+.+++.+.....  ..+  .|....    -+.+.|+.+++|+      +.+ .++|+
T Consensus        20 ~~~~vylD~aa~-----~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~------~a~~~~eIv   88 (405)
T COG0520          20 GKPLVYLDNAAT-----SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL------NADSSDEIV   88 (405)
T ss_pred             CCCeEEecCccc-----ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh------CCCCCCeEE
Confidence            567788877753     235788889988876521  111  122111    2567889999998      456 48999


Q ss_pred             EcCCHHHHHHHHHHHh---cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          112 VTLGCKQAVEVILSVL---ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l---~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +|.|+|++++.+..++   .++||+|++..-.|++    |....+..|++++.++++  ++..++.+.++..+++++|++
T Consensus        89 ft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~~~Tklv  166 (405)
T COG0520          89 FTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLITPKTKLV  166 (405)
T ss_pred             EeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcCCCceEE
Confidence            9999999999999999   5899999999999874    456666779999999986  344699999999999999999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      .+++.+|.||.+.+   +++|+++|+++|+++++|.+++.    +..+..+..++-+   ++..|..|+++.| ..+|.+
T Consensus       167 ais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l~~D---f~afsgHKwl~gP-~GiGvL  235 (405)
T COG0520         167 ALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQELGCD---FLAFSGHKWLLGP-TGIGVL  235 (405)
T ss_pred             EEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----CccCCCchhcCCC---EEEEcccccccCC-CceEEE
Confidence            99999999999999   99999999999999999999987    4445555555544   8999999976666 347888


Q ss_pred             EeeC
Q 022213          265 VTND  268 (301)
Q Consensus       265 ~~~~  268 (301)
                      .++.
T Consensus       236 y~r~  239 (405)
T COG0520         236 YVRK  239 (405)
T ss_pred             EEch
Confidence            7744

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.83  E-value=1.3e-19  Score=164.00  Aligned_cols=173  Identities=18%  Similarity=0.264  Sum_probs=129.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcC
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQ  152 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g  152 (301)
                      +..|+. .....|++++|++.         .++.++++++++++..++.+++++||+|+++.|.|..+...+    +..|
T Consensus        45 y~ry~~-p~~~~Le~~lA~l~---------~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G  114 (366)
T PRK07582         45 YGRASN-PTWRALEAALGELE---------GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG  114 (366)
T ss_pred             eECCCC-ccHHHHHHHHHHHc---------CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence            445655 46789999999986         245666677778999999999999999999999998875543    4578


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++++++....      .+    .+.++++.+++++|+||||.+.+   +++|+++|+++|+++|+|++|....  +.. 
T Consensus       115 ~~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~--~~~-  178 (366)
T PRK07582        115 VTVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL--GQR-  178 (366)
T ss_pred             EEEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc--ccC-
Confidence            99988876321      11    22357889999999999998887   8999999999999999999996422  111 


Q ss_pred             CCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       ++. +..+   ++++|+||.++. +|+|+||++++++       +++.+++....
T Consensus       179 -p~~-~g~D---ivv~S~sK~l~G~~g~~~G~v~~~~~-------~l~~~l~~~~~  222 (366)
T PRK07582        179 -PLE-LGAD---LVVASDTKALTGHSDLLLGYVAGRDP-------ELMAAVERWRL  222 (366)
T ss_pred             -chh-cCCc---EEEecccccccCCCCeeEEEEEcCcH-------HHHHHHHHHHH
Confidence             221 2222   788999999855 6899999987542       46676665543

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.83  E-value=4.5e-19  Score=160.14  Aligned_cols=191  Identities=17%  Similarity=0.161  Sum_probs=140.5

Q ss_pred             CChHHHHHHHHHHHhcCC--CCCCCCC------CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-
Q 022213           59 RTAVEAEDAIVDAVRSGK--FNCYATN------SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-  129 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~--~~~Y~~~------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-  129 (301)
                      ++|+.+.+++.+.+....  ...+...      .-+.++|+.+++++      ++++++|++|+|++++++.++.++.. 
T Consensus         9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~~   82 (353)
T TIGR03235         9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL------GADTEEVIFTSGATESNNLAILGLARA   82 (353)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence            466788899888774311  0010000      01356778888877      45778999999999999999998863 


Q ss_pred             ---CC-CEEEEcCCCCcch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          130 ---PG-ANVLLPRPGWPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       130 ---~g-d~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                         +| +.|++....|+.+   ...++..|++++.+++..  ++.+|++.+++.++++++++++++++||||.+++   +
T Consensus        83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~  157 (353)
T TIGR03235        83 GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I  157 (353)
T ss_pred             cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence               56 7788887777654   334456799999988753  4568999999999888899999999999999999   8


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++|+++|+++|+++++|++++...    .+..+....-   -+++.|++|.++.+|  +|++++++.
T Consensus       158 ~~I~~l~~~~~~~~ivD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~~gp~g--~g~l~~~~~  215 (353)
T TIGR03235       158 REIAEVLEAHEAFFHVDAAQVVGK----ITVDLSADRI---DLISCSGHKIYGPKG--IGALVIRKR  215 (353)
T ss_pred             HHHHHHHHHcCCEEEEEchhhcCC----ccccccccCC---CEEEeehhhcCCCCc--eEEEEEccC
Confidence            899999999999999999987522    2222222222   277779999876556  899888653

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.83  E-value=4.8e-19  Score=162.96  Aligned_cols=212  Identities=19%  Similarity=0.195  Sum_probs=145.8

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++++++|+..|..   .+..++.+.+++.++++....      ..|++.....+|++.+|+++    +    .+..++.+
T Consensus        45 ~~~~~~~~s~dyl---gl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~----g----~~~~~~~~  113 (407)
T PRK09064         45 EREVTVWCSNDYL---GMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH----G----KEAALVFT  113 (407)
T ss_pred             CceEEEEECCCCc---CCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh----C----CCcEEEEC
Confidence            4678999998853   577788999999888764221      11233334567778888776    2    23455555


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~  188 (301)
                      +++++...++..+..  +++.|+.....|......+...+.+...++.       .|++.+++.++    ++++++++++
T Consensus       114 sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~  186 (407)
T PRK09064        114 SGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFES  186 (407)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeC
Confidence            566788788887764  7777777766666665666667776655442       36777777664    3578899999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCC-CCCEEEEecCcccCCCCcceeEEEEe
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGS-IVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||+|.+.+   +++|.++|+++|+++|+||+|....++... ..+.. .+. ....|+++||||.|+++|   ||+++
T Consensus       187 v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~  259 (407)
T PRK09064        187 VYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAG  259 (407)
T ss_pred             CCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC-CChHHhcCCCCCCeEEEEecchhhhccC---ceEec
Confidence            9999999998   888888899999999999999854443211 11111 111 123688999999999888   99887


Q ss_pred             eCCCCcccchhHHHHHHhh
Q 022213          267 NDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~  285 (301)
                      +.        ++++.++..
T Consensus       260 ~~--------~~~~~l~~~  270 (407)
T PRK09064        260 SA--------ALVDAVRSY  270 (407)
T ss_pred             CH--------HHHHHHHHh
Confidence            33        477777654

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.83  E-value=5.9e-19  Score=162.06  Aligned_cols=201  Identities=16%  Similarity=0.175  Sum_probs=148.1

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCC--CC------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCY--AT------NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y--~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      .+.|+.+.+.     +.++.+.+++.+.+.......+  ..      ...+.++|+.+++++      +.++++|++|+|
T Consensus         4 ~~yld~aa~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g   72 (402)
T TIGR02006         4 PIYLDYAATT-----PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI------GADSREIVFTSG   72 (402)
T ss_pred             cEEeeCCcCC-----CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCC
Confidence            3677777542     4567888888777642211001  00      112456677788877      457789999999


Q ss_pred             HHHHHHHHHHHhc----CCCCEEEEcCCCCcchHHH---HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213          116 CKQAVEVILSVLA----RPGANVLLPRPGWPYYEGI---AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       116 ~~~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      ++++++.++.++.    ++||+|+++.+.|.++...   ++..|.+++.+++++  ++.+|++.+++.++++++++++++
T Consensus        73 ~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~  150 (402)
T TIGR02006        73 ATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMH  150 (402)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEEC
Confidence            9999999988764    6899999999999875433   345699999988753  456899999999988899999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++||||.+.+   +++|.++|+++|+++++|++++...    .+..+..+..   -+++.|++|.++.+|  +|++++++
T Consensus       151 ~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~----~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~~~~  218 (402)
T TIGR02006       151 VNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGK----IPINVNELKV---DLMSISGHKIYGPKG--IGALYVRR  218 (402)
T ss_pred             CCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCC----cccCccccCC---CEEEEehhhhcCCCc--eEEEEEcc
Confidence            9999999998   8888999999999999999997522    2222322222   288889999866446  88888765


Q ss_pred             C
Q 022213          269 P  269 (301)
Q Consensus       269 ~  269 (301)
                      .
T Consensus       219 ~  219 (402)
T TIGR02006       219 K  219 (402)
T ss_pred             C
Confidence            3

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.83  E-value=4.4e-19  Score=160.96  Aligned_cols=181  Identities=15%  Similarity=0.178  Sum_probs=135.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      ++.++++.++......  ....|+..  .+...|++.+|++.        ..+++++++|+++|+..++.+++++||+|+
T Consensus        35 ~~~~~~~~~~~~~~~~--~~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~GD~Vv  104 (394)
T PRK09028         35 FDTVAEMRHAAKNRAN--GEMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKAGDHLL  104 (394)
T ss_pred             cCCHHHHHHHhccCcc--CCceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence            5555555554432211  11246552  24569999999886        235799999999999999999999999999


Q ss_pred             EcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          136 LPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       136 ~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      +++|.|.++...    +...|+++.+++.       .+.+.+++++++++++|++++|+||||.+.+   +++|+++|++
T Consensus       105 v~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~-------~~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~~  174 (394)
T PRK09028        105 MVDSCYEPTRDLCDKILKGFGIETTYYDP-------MIGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAHE  174 (394)
T ss_pred             EECCCcHHHHHHHHHhhhhcceEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHH
Confidence            999999876543    3557888777653       2457889888889999999999999988866   9999999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEe
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVT  266 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~  266 (301)
                      +|+++|+|++|+....    ..++ .++-+   +++.|.+|.++.+ +...|+++.
T Consensus       175 ~g~~lvvD~t~a~p~~----~~Pl-~~GaD---ivv~S~tK~l~Gh~d~~~G~~~~  222 (394)
T PRK09028        175 HDIVVMLDNTWASPIN----SRPF-EMGVD---ISIQAATKYIVGHSDVMLGTATA  222 (394)
T ss_pred             cCCEEEEECCcccccc----CCcc-ccCce---EEEEeCCeEecCCCCEEEEEEEC
Confidence            9999999999986321    1222 22222   9999999998665 677776653

>PRK05939 hypothetical protein; Provisional

Probab=99.83  E-value=3.9e-19  Score=162.15  Aligned_cols=156  Identities=20%  Similarity=0.203  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPE  163 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~  163 (301)
                      ..|++.++++.        ..+..+++++++.|+..++.+++++||+|+++++.|..+.   ..+...|+++++++.   
T Consensus        50 ~~lE~~la~le--------g~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~---  118 (397)
T PRK05939         50 AALEAKITKME--------GGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA---  118 (397)
T ss_pred             HHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC---
Confidence            38889999887        2344666667799999999999999999999999997643   345678999988875   


Q ss_pred             CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                          .|++++++.+++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....    +.+. .+   +.
T Consensus       119 ----~d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~----~~~~-~~---ga  183 (397)
T PRK05939        119 ----TDVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWL----FRPK-DV---GA  183 (397)
T ss_pred             ----CCHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccc----cCcc-cc---CC
Confidence                3789999999989999999999999999976   99999999999999999999864211    1111 11   23


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .+++.|+||.++.+|.++|++++.+
T Consensus       184 Divv~S~sK~~~g~g~~igg~v~~~  208 (397)
T PRK05939        184 SLVINSLSKYIAGHGNALGGAVTDT  208 (397)
T ss_pred             EEEEecCeecccCCCCeEEEEEecC
Confidence            4999999999999999999998743

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.83  E-value=5.4e-19  Score=142.19  Aligned_cols=166  Identities=17%  Similarity=0.108  Sum_probs=130.4

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH-HHHHhcCceEEEeecCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE-GIAQRKQVEVRHFDLLPER  164 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~  164 (301)
                      +.++++.+++++.      .+.+++++++|+++++..+++++.+++++|+++.+.|.+.. ..+...|.++..++.+...
T Consensus         2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~   75 (170)
T cd01494           2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG   75 (170)
T ss_pred             HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCC
Confidence            3578899999983      46789999999999999999999988999999999999887 7888899999999876544


Q ss_pred             CCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          165 NWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       165 ~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      ....+.+.+++.. ..+++.+++++++|++|...+   .++|.++|+++|+++|+|++|..+...... ...   .....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~---~~~~~  148 (170)
T cd01494          76 YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-VLI---PEGGA  148 (170)
T ss_pred             ccchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-ccc---ccccC
Confidence            3333333554433 457788899999999999998   588888899999999999999987764321 011   11123


Q ss_pred             EEEEecCcccCCCCcceeEEEEe
Q 022213          244 VITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      .+++.|++|.++.  .|+|++++
T Consensus       149 d~~~~s~~K~~~~--~~~G~l~~  169 (170)
T cd01494         149 DVVTFSLHKNLGG--EGGGVVIV  169 (170)
T ss_pred             CEEEEEcccccCC--CceEEEEe
Confidence            4888999999766  67999976

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.83  E-value=1.4e-18  Score=158.15  Aligned_cols=191  Identities=23%  Similarity=0.333  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCC
Q 022213           63 EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGW  141 (301)
Q Consensus        63 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~  141 (301)
                      .-.+++.+.+..+..  |+    ...+++++++++.+.++    .+++++++|+++|+.+++.++ +++||+|+++.|+|
T Consensus        12 ~~~~~~~~~l~~~~~--~g----~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~   81 (375)
T PRK11706         12 TELDYIQQAMSSGKL--CG----DGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF   81 (375)
T ss_pred             HHHHHHHHHHHcCCc--cC----CCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc
Confidence            345667777764432  32    23556666666655433    468999999999999988876 68999999999999


Q ss_pred             cchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213          142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV  221 (301)
Q Consensus       142 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~  221 (301)
                      ..+...+...|+++++++++++ ++.+|++++++.+++++++++++   |++|...+   +++|.++|+++|+++|+|++
T Consensus        82 ~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a  154 (375)
T PRK11706         82 VSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAA  154 (375)
T ss_pred             HHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECc
Confidence            9999999999999999998653 57799999999998888888865   46898877   78888889999999999999


Q ss_pred             Ccccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          222 YGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       222 y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      |+... +.+.   ++..+.    .+.+.||+  |.++ +|.+.++++. +       +++.++++...
T Consensus       155 ~a~g~~~~~~---~~g~~~----~~~~~Sf~~~K~l~-~g~gG~~~~~-~-------~~~~~~~~~~~  206 (375)
T PRK11706        155 QGVMSTYKGR---ALGTIG----HIGCFSFHETKNYT-AGEGGALLIN-D-------PALIERAEIIR  206 (375)
T ss_pred             cccccccCCe---eeecCc----CEEEEeCCCCcccc-ccCCeEEEEC-C-------HHHHHHHHHHH
Confidence            99866 3332   222222    14444554  9964 5878777763 2       24666665554

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=5.7e-19  Score=162.37  Aligned_cols=158  Identities=21%  Similarity=0.249  Sum_probs=127.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh----cCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR----KQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~  160 (301)
                      ....|++.+|++.        ..+..++++++++|+..++.+++++||+|+++.+.|.+....+..    .|+++.+++.
T Consensus        59 t~~~Le~~lA~l~--------g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~  130 (425)
T PRK06084         59 TNDVLEQRVAALE--------GGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH  130 (425)
T ss_pred             hHHHHHHHHHHHh--------CCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence            4568888899887        235677888899999999999999999999999999865444432    4666666543


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++++++++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+.....    .++ .+..
T Consensus       131 -------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~----~p~-~~ga  195 (425)
T PRK06084        131 -------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC----RPF-EHGA  195 (425)
T ss_pred             -------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----Chh-hcCC
Confidence                   4889999999888999999999999999999   888899999999999999999853321    122 1222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         -|++.|+||.++.+|.++|.+++.+
T Consensus       196 ---Divv~S~tK~l~G~g~~~gG~v~~~  220 (425)
T PRK06084        196 ---DIVVHSLTKYIGGHGTSIGGIVVDS  220 (425)
T ss_pred             ---CEEEECchhcccccccceeEEEEeC
Confidence               2999999999999999999988754

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.82  E-value=7.6e-19  Score=159.63  Aligned_cols=175  Identities=22%  Similarity=0.243  Sum_probs=132.5

Q ss_pred             CCCCCC--CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcC
Q 022213           79 CYATNS--GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQ  152 (301)
Q Consensus        79 ~Y~~~~--g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g  152 (301)
                      .|....  ...+|++.+++++        ..++++++++++.++..++. ++++||+|+++.+.|.++..    .+...|
T Consensus        40 ~Y~r~~~p~~~~le~~la~l~--------g~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G  110 (378)
T TIGR01329        40 DYTRSGNPTRTALESLLAKLD--------KADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSG  110 (378)
T ss_pred             ccCCCCChHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcC
Confidence            465431  1356777777766        23677778888889988776 77999999999999987644    345689


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++++++.       .|++.+++.++++++++++++|+||+|.+.+   +++|+++|+++|+++|+|++|....    ..
T Consensus       111 ~~v~~vd~-------~d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~----~~  176 (378)
T TIGR01329       111 VVVVHVDT-------TDLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL----LC  176 (378)
T ss_pred             cEEEEeCC-------CCHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc----cC
Confidence            99998875       3789999999888999999999999999998   9999999999999999999986422    12


Q ss_pred             CCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      .++. +..+   ++++|++|.++.+ |.+.|++++++.       ++.++++....
T Consensus       177 ~~l~-~g~D---i~v~S~tK~l~G~~~~~~G~v~~~~~-------~~~~~~~~~~~  221 (378)
T TIGR01329       177 NPLE-LGAD---IVYHSATKFLAGHSDVMAGVLAVKGE-------EIAKKVYFLQN  221 (378)
T ss_pred             Chhh-cCCc---EEEEecceeccCCccceeEEEEeCcH-------HHHHHHHHHHH
Confidence            2232 2222   8999999987764 588999987543       35566655443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.82  E-value=8.5e-20  Score=164.18  Aligned_cols=197  Identities=16%  Similarity=0.093  Sum_probs=150.2

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----------
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----------  129 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----------  129 (301)
                      +..+.+.+...+.... ..|....+..++++++++++.+.+|.+...+++++|+|+|+++..++.+++.           
T Consensus        12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~   90 (345)
T cd06450          12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGG   90 (345)
T ss_pred             HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccc
Confidence            3455566665555433 3588878899999999999988777654556899999999999999998853           


Q ss_pred             -CC--CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHH
Q 022213          130 -PG--ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       130 -~g--d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~  200 (301)
                       ++  +.|+++.++|..+...++..|.+++.++++++  +.+|++.|++.+++      +++.+++++|+||||.+.+  
T Consensus        91 ~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~--  166 (345)
T cd06450          91 RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP--  166 (345)
T ss_pred             cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC--
Confidence             23  47888999999988888888999999987543  36999999999876      6778888999999999977  


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCCcceeEEEEe
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~G~rvG~~~~  266 (301)
                       +++|+++|+++|+++++|++|+.+.+........  .....++ .+..|++|. +.++.++|++++
T Consensus       167 -~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~-l~~p~g~g~~~~  229 (345)
T cd06450         167 -LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKY-GLVPLGCSAVLV  229 (345)
T ss_pred             -HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHh-hCCCcchHHHHH
Confidence             8889999999999999999999876432111110  0111122 566799997 456678888754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.82  E-value=1.2e-18  Score=158.77  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=139.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCC---------CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNS---------GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-  128 (301)
                      ++|+.+.+++.+.+....  .++...         -+.++|+.+++++      +.++++|++|+|+++++..+++++. 
T Consensus        10 ~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~t~~~t~a~~~al~~~~~   81 (379)
T TIGR03402        10 RVDPEVLEAMLPYFTEYF--GNPSSMHSFGGEVGKAVEEAREQVAKLL------GAEPDEIIFTSGGTESDNTAIKSALA   81 (379)
T ss_pred             CCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            456788898888775321  122111         1346667777776      3567899999999999999998874 


Q ss_pred             --CCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213          129 --RPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       129 --~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~  203 (301)
                        .+||+|++....|+++.   ..++..|.+++.++.+.  ++.+|++.+++.++++++++++++++||||.+++   ++
T Consensus        82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~  156 (379)
T TIGR03402        82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---IE  156 (379)
T ss_pred             hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HH
Confidence              45789999998887654   33445799999988743  3458999999999888999999999999999999   67


Q ss_pred             HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|.++|+++|+++++|++++.    +..+..+...+-+   +++.|.+|.++.+|  +|+++++.
T Consensus       157 ~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~g~l~v~~  212 (379)
T TIGR03402       157 EIGEIAKERGALFHTDAVQAV----GKIPIDLKEMNID---MLSLSGHKLHGPKG--VGALYIRK  212 (379)
T ss_pred             HHHHHHHHcCCEEEEECcccc----cccccCcccCCCC---EEEEcHHHcCCCCc--eEEEEECC
Confidence            889999999999999999975    2223333332222   77789999765556  77777654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.82  E-value=1.1e-18  Score=154.55  Aligned_cols=204  Identities=18%  Similarity=0.169  Sum_probs=165.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      .+.+.+.|+.+.-     -+.++.|.+++...+..    +.-..|+-  ..+....|+.+|+++      +.++++|++|
T Consensus        40 ~~~~~vyld~~at-----~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFt  108 (428)
T KOG1549|consen   40 HGTRPVYLDNQAT-----GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFT  108 (428)
T ss_pred             CCCccEEEecCcC-----CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh------CCCCCcEEEe
Confidence            3667888888863     35677888888876653    22112432  334778999999999      5688889999


Q ss_pred             CCHHHHHHHHHHHhc-CCCC----EEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEE
Q 022213          114 LGCKQAVEVILSVLA-RPGA----NVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV  185 (301)
Q Consensus       114 ~g~~~al~~~~~~l~-~~gd----~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  185 (301)
                      +|+||+++++++.+. ..+|    .|++.+-.|....   ..++..|++++++|+.  +...+|.+.|++.++++++++.
T Consensus       109 s~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~  186 (428)
T KOG1549|consen  109 SGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVS  186 (428)
T ss_pred             CCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEE
Confidence            999999999999996 3566    8999888888654   3445678999999986  4456999999999999999999


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +.+.+|-+|+.++   +++|+++|+++++.+++|.+++-    |+-+..+..++.+   ++..|.+|.||.||  +|++.
T Consensus       187 I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav----G~i~vDV~eln~D---~~s~s~HK~ygp~~--iGaLY  254 (428)
T KOG1549|consen  187 IMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV----GKIPVDVQELNAD---FLSISAHKIYGPPG--IGALY  254 (428)
T ss_pred             EEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc----CCccccHHHcCch---heeeecccccCCCc--ceEEE
Confidence            9999999999999   99999999999999999999987    5556666666555   77779999999999  99998


Q ss_pred             eeC
Q 022213          266 TND  268 (301)
Q Consensus       266 ~~~  268 (301)
                      +..
T Consensus       255 vr~  257 (428)
T KOG1549|consen  255 VRR  257 (428)
T ss_pred             Ecc
Confidence            864

>PLN02651 cysteine desulfurase

Probab=99.82  E-value=3.1e-18  Score=155.26  Aligned_cols=190  Identities=18%  Similarity=0.160  Sum_probs=139.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCC------CCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh---
Q 022213           59 RTAVEAEDAIVDAVRSGKFNC------YAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL---  127 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~------Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---  127 (301)
                      +.|+.+.+++.+.+.......      +..  ..-+.++|+.+++++      +.++++|++|+|+|++++.++.++   
T Consensus        10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~t~~~t~a~~~~l~~~~~~   83 (364)
T PLN02651         10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI------GADPKEIIFTSGATESNNLAIKGVMHF   83 (364)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence            456788898887765321100      000  011345667777776      356789999999999988887665   


Q ss_pred             -cCCCCEEEEcCCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213          128 -ARPGANVLLPRPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       128 -~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~  203 (301)
                       .++||+|++....|+++..   .++..|++++.+++..  ++.+|++.+++.++++++++++++++|+||.+++   ++
T Consensus        84 ~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~  158 (364)
T PLN02651         84 YKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VE  158 (364)
T ss_pred             ccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HH
Confidence             4689999999988876433   3345788888888743  4568999999999888999999999999999999   88


Q ss_pred             HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+++|+++|+++++|.+++...    .+..+..++-+   +++.|..|. +.| ..+|++++++
T Consensus       159 ~I~~~~~~~g~~~~vD~a~~~g~----~~~~~~~~~~D---~~~~s~hK~-~gp-~G~g~l~v~~  214 (364)
T PLN02651        159 EIGELCREKKVLFHTDAAQAVGK----IPVDVDDLGVD---LMSISGHKI-YGP-KGVGALYVRR  214 (364)
T ss_pred             HHHHHHHHcCCEEEEEcchhhCC----cccCcccCCCC---EEEechhhh-CCC-CceEEEEEcC
Confidence            89999999999999999998622    22333333333   888899996 433 4588888765

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.82  E-value=4.7e-19  Score=154.15  Aligned_cols=205  Identities=21%  Similarity=0.290  Sum_probs=131.6

Q ss_pred             CCCCC-CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH--HHHHHHhc----C--------CCCEEEEcCCC
Q 022213           76 KFNCY-ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV--EVILSVLA----R--------PGANVLLPRPG  140 (301)
Q Consensus        76 ~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al--~~~~~~l~----~--------~gd~Vl~~~p~  140 (301)
                      +..+| +...|++++|+-.|+++      ++++++|++..+++-.+  +.+.++++    .        +.-+.++|.|+
T Consensus        60 D~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPG  133 (425)
T PF12897_consen   60 DCRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPG  133 (425)
T ss_dssp             BTTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES-
T ss_pred             cccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCC
Confidence            36789 88899999999999999      78999999988877665  23333332    1        12378999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCC--CCCcccCCCHHHHHHHHHH-HHhCCCe
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINP--GNPCGNVFTYHHLQEIAEM-ARKLRVM  215 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p--~nptG~~~~~~~l~~i~~~-~~~~~~~  215 (301)
                      |..+..+++..|++++.||+..+   ++|.|.+++++.+  ..|. +.|.|  +||||.++|.+.+++++.+ ....++.
T Consensus       134 YDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~D~svKG-iWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFR  209 (425)
T PF12897_consen  134 YDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAEDPSVKG-IWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFR  209 (425)
T ss_dssp             -HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHTSTTEEE-EEE-SSS-TTT-----HHHHHHHHHS--SSTT-E
T ss_pred             chHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhcCCccce-EEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeE
Confidence            99999999999999999999643   4899999998843  3344 44555  9999999999999999998 4567999


Q ss_pred             EEEccCCcccccCC-CC-CCCcccc------CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          216 VVADEVYGHLTFGS-IP-YTPMGLF------GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       216 ii~D~~y~~~~~~~-~~-~~~~~~~------~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      |+.|++|....+.+ .. ...+..+      +..++++.+.|+||. ..||.+|+++.++.        +.++.+++..+
T Consensus       210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-Tf~GaGva~~aaS~--------~Nl~~~~~~~~  280 (425)
T PF12897_consen  210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-TFPGAGVAFFAASE--------ANLAWIKKHLS  280 (425)
T ss_dssp             EEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S-TTSS-EEEEE-H--------HHHHHHHHHHH
T ss_pred             EEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-ccCCcceeeeecCH--------HHHHHHHHHhc
Confidence            99999999887732 22 1111111      334679999999999 89999999999865        36677766655


Q ss_pred             -ccCCCccccccc
Q 022213          288 -IYSDIPTFIQVC  299 (301)
Q Consensus       288 -~~~~~~~~~q~~  299 (301)
                       ...++.+++|..
T Consensus       281 ~~tIgpdKvNQLR  293 (425)
T PF12897_consen  281 VQTIGPDKVNQLR  293 (425)
T ss_dssp             HH-S---HHHHHH
T ss_pred             CceeCccHHHHHH
Confidence             366888888853

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.81  E-value=2.3e-18  Score=156.09  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=125.6

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  161 (301)
                      ...|++.+|++.        ..+++++++|+++|+..++.+++++||+|++++|.|.+....    +...|+++..++..
T Consensus        52 ~~~lE~~lA~l~--------g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~  123 (377)
T TIGR01324        52 HFALQDAMCELE--------GGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL  123 (377)
T ss_pred             HHHHHHHHHHHh--------CCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence            368999999987        346899999999999999999999999999999999876543    35678887776531


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                             +.+.+++.+++++++|++.+|+||+|...+   +++|+++|+++|+++|+|++|+.....    .++ .++. 
T Consensus       124 -------~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~----~pl-~~ga-  187 (377)
T TIGR01324       124 -------IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF----KPL-EHGV-  187 (377)
T ss_pred             -------CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc----Ccc-ccCc-
Confidence                   237899989889999999999999988876   999999999999999999999864332    122 1222 


Q ss_pred             CCEEEEecCcccCCCC-cceeEEEEee
Q 022213          242 VPVITLGSISKRWLVP-GWRFGWLVTN  267 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~-G~rvG~~~~~  267 (301)
                        -|+++|++|.++.+ +...|+++++
T Consensus       188 --Divv~S~tK~l~G~~d~~gG~v~~~  212 (377)
T TIGR01324       188 --DISIQAGTKYLVGHSDIMIGTVVAN  212 (377)
T ss_pred             --eEEEecCceeccCCCCceEEEEEeC
Confidence              28999999998764 5778888763

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.81  E-value=1.6e-18  Score=157.85  Aligned_cols=241  Identities=14%  Similarity=0.100  Sum_probs=162.0

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+++|..|.-..+-.. .++.+.+++.++++...  ... ..+..+++.++++++.+..+    .+.++++++++
T Consensus        25 d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~   96 (377)
T PRK02936         25 DNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIW--HVS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGA   96 (377)
T ss_pred             eCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcc--ccc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcH
Confidence            346889999988863322223 56788899999887422  122 23457899999999976322    35899999999


Q ss_pred             HHHHHHHHHhc-CCC-CEEEEcCCCCcchHHH-HHhcCceEE---EeecCCCCCC--CCCHHHHHhhcccCccEEEEcCC
Q 022213          118 QAVEVILSVLA-RPG-ANVLLPRPGWPYYEGI-AQRKQVEVR---HFDLLPERNW--EVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       118 ~al~~~~~~l~-~~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      +|++.+++... -+| ++|++.+++|++.... ....+....   +.++.++..+  -.|++.+++.+.++++++++..+
T Consensus        97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i  176 (377)
T PRK02936         97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVV  176 (377)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecc
Confidence            99999998653 244 6799999999864322 222221110   1111110000  12789999988877888888888


Q ss_pred             CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++++|.. .+.+.+++|.++|++||+++|+||+|..+.+.+.. ..+..+....+++   ++||.++ +|+|+||++++.
T Consensus       177 ~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~~~~~di~---t~sK~l~-~G~~ig~v~~~~  251 (377)
T PRK02936        177 QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQFGLDPDIV---TVAKGLG-NGIPVGAMIGKK  251 (377)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhhCCCCcEE---EEccccc-CCCccEEEEEcH
Confidence            8988876 57899999999999999999999999887665532 2222232223333   7999988 899999999743


Q ss_pred             CCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          269 PNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                              ++++.+..... ...+.++++|.+
T Consensus       252 --------~~~~~~~~~~~~~t~~~~~~~~aa  275 (377)
T PRK02936        252 --------ELGTAFGPGSHGSTFGGNPLAMAA  275 (377)
T ss_pred             --------HHHhhccCCCCCCCCCCCHHHHHH
Confidence                    36666654322 233567777765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.81  E-value=2.8e-18  Score=157.77  Aligned_cols=214  Identities=19%  Similarity=0.129  Sum_probs=147.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++++++|+..+.   -.+...+.+.+++.++++.....      .++...-..+|++.+++++    +    .+..++++
T Consensus        44 ~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~  112 (406)
T PRK13393         44 PREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLH----G----KEAALLFT  112 (406)
T ss_pred             CccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHh----C----CCcEEEeC
Confidence            467899988874   34666788999999998742210      0111112356777777776    2    35666666


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~  188 (301)
                      +++++...++..+..  +||.|+.....|......+...|.++..++.       .|++.+++.++    ++++++++++
T Consensus       113 SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~  185 (406)
T PRK13393        113 SGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFES  185 (406)
T ss_pred             CcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcC
Confidence            667899999988765  7888877777887776677777777766653       36666766553    2467788999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC-CEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-PVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ++|++|.+.+   +++|.++|+++++++|+||+|....++..........+... ..|+++||||.|+++|   ||++++
T Consensus       186 v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~  259 (406)
T PRK13393        186 VYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGS  259 (406)
T ss_pred             CCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCC
Confidence            9999999999   88888889999999999999985444321111111111112 3588899999999988   998763


Q ss_pred             CCCCcccchhHHHHHHhhh
Q 022213          268 DPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~  286 (301)
                      .        ++++.++...
T Consensus       260 ~--------~~~~~l~~~~  270 (406)
T PRK13393        260 A--------ALCDFIRSFA  270 (406)
T ss_pred             H--------HHHHHHHHhC
Confidence            2        4677776653

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.81  E-value=1.4e-18  Score=159.02  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~  160 (301)
                      ....|++.++++.        ..+..+++++++.|+.+++.+++++||+|+++.+.|.+....    +...|+++.+++.
T Consensus        62 tv~~lE~~la~le--------g~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         62 TLAAFEQKLAELE--------GGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             HHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            4678899999987        335689999999999999999999999999999999866555    6778999998864


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                            ..|++.+++++++++++|++.+|+||++.+.+   +++|+++|+++|+++|+|++|..-..    ..++ .++-
T Consensus       134 ------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----~~pl-~~GA  199 (432)
T PRK06702        134 ------NLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----CQAF-EHGA  199 (432)
T ss_pred             ------CCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----CChh-hcCC
Confidence                  26889999999999999999999999999999   99999999999999999999863211    1111 1222


Q ss_pred             CCCEEEEecCcc-----cCCCCccee-----EEEEe
Q 022213          241 IVPVITLGSISK-----RWLVPGWRF-----GWLVT  266 (301)
Q Consensus       241 ~~~vi~~~s~SK-----~~~~~G~rv-----G~~~~  266 (301)
                      +   |++.|+||     +..++|.++     +|...
T Consensus       200 D---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~  232 (432)
T PRK06702        200 N---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG  232 (432)
T ss_pred             C---EEEEccccccCCCcceeceEEEeCCCcccccc
Confidence            2   99999999     666677776     56554

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.80  E-value=1e-18  Score=161.47  Aligned_cols=239  Identities=12%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +...+++.++|+..|..... .-..++.+.+++.+++....  .|. +..+..+|+++|++++..       .++|++++
T Consensus        42 l~d~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~lae~l~~~~~~-------~~~v~~~~  111 (423)
T TIGR00713        42 LYDVDGNEYIDYVLSWGPLI-LGHAHPRVVEAVKEALERGT--SYGAPTEAEILLAKEIISRVPS-------VEMVRFVN  111 (423)
T ss_pred             EEeCCCCEEEEccccccccc-cCCCCHHHHHHHHHHHHhCC--cCCCCCHHHHHHHHHHHHhCCc-------ccEEEEeC
Confidence            44456899999998865421 12456889999999987543  343 344678899999988722       36899999


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc---CceEEEeecCCC-------CCC---CCCHHHHHhhcc-
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK---QVEVRHFDLLPE-------RNW---EVDLDAVEALAD-  178 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~-------~~~---~~~~~~l~~~~~-  178 (301)
                      |+++|++.+++....  ..++|+...++|+++...+...   +......+..+.       ...   ..|++.+++.++ 
T Consensus       112 sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~  191 (423)
T TIGR00713       112 SGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEE  191 (423)
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHH
Confidence            999999999986542  4589999999999875433321   111100010000       000   027889988876 


Q ss_pred             --cCccEEEE-cCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213          179 --KNTAAMVI-INPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       179 --~~~~~v~l-~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  254 (301)
                        .+++++++ +.++| +|.+.+ .+.+++|.++|++||+++|+||+|..+.++. .+ ....++...+++   +|||.+
T Consensus       192 ~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~-~~-~~~~~~~~pDi~---t~sK~l  265 (423)
T TIGR00713       192 YGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL-GG-AQEYFGVEPDLT---TLGKII  265 (423)
T ss_pred             cCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc-ch-hHHHhCCCcchh---hhhhhh
Confidence              35566666 47788 788887 6899999999999999999999999885432 11 111122222333   799998


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHHHhh---hc-ccCCCccccccc
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC---LS-IYSDIPTFIQVC  299 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~q~~  299 (301)
                      + +|+|+||++++.        ++++.++..   .. ...+.++++|.+
T Consensus       266 ~-~G~pig~v~~~~--------~i~~~~~~~~~~~~~~T~~~~~~~~aa  305 (423)
T TIGR00713       266 G-GGLPVGAFGGRR--------EIMERLAPEGPVYQAGTLSGNPLAMAA  305 (423)
T ss_pred             c-CCCceeeeeEHH--------HHHHhhCcCCCeeeccCCCCCHHHHHH
Confidence            7 899999999853        477777532   11 222456666554

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.80  E-value=3.1e-18  Score=159.47  Aligned_cols=201  Identities=23%  Similarity=0.284  Sum_probs=142.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHH---hhhCCCCCCCCCEEEcCCHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYL---SRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l---~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..++|+.|.|+    +..|..+.++.... .  ....|.+.  .-...++++++++.   .+.+|  ++.+++++|+|++
T Consensus        69 ~~~~lg~g~~~----~~~p~~~~~~~~~~-~--~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t  139 (447)
T PRK00451         69 YPSFLGAGAYD----HYIPAVVDHIISRS-E--FYTAYTPYQPEISQGTLQAIFEYQTMICELTG--MDVANASMYDGAT  139 (447)
T ss_pred             CcccCcccccC----CcCcHHHHHHHhch-h--HHHhcCCCCCccchHHHHHHHHHHHHHHHHhC--CCcceEEecCcHH
Confidence            67889988864    45565655544322 1  12235441  11234565555433   44444  4566899999999


Q ss_pred             HHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHh----cCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213          118 QAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQR----KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP  192 (301)
Q Consensus       118 ~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np  192 (301)
                      ++++.++.++. .+||+|+++.+.|+.+...++.    .|.+++.+++++  + .+|++++++.++++++++++++| ||
T Consensus       140 ~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t~~v~l~~p-n~  215 (447)
T PRK00451        140 ALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDTAAVVVQYP-NF  215 (447)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCeEEEEEECC-CC
Confidence            99999998885 7899999999999988766543    689999998754  3 68999999999888999999999 89


Q ss_pred             cccCCCHHHHHHHHHHHHhCCCeEEE--ccCCcccccCCCCCCCccccCCCCCEEEEe---cCcccCCCCcceeEEEEee
Q 022213          193 CGNVFTYHHLQEIAEMARKLRVMVVA--DEVYGHLTFGSIPYTPMGLFGSIVPVITLG---SISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~~~~~ii~--D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~---s~SK~~~~~G~rvG~~~~~  267 (301)
                      ||.+.+   +++|+++|+++|+++++  |.+.....      .....++.   .++++   +|||.+.+.|.|+||++++
T Consensus       216 tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~------~~~~~~~~---D~~~~s~~k~~~~~~~~Gpg~G~l~~~  283 (447)
T PRK00451        216 FGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL------KPPGEYGA---DIVVGEGQPLGIPLSFGGPYLGFFATR  283 (447)
T ss_pred             CCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC------CCcccCCC---CEEEECCCcCCCCCCCCCCCchHHHhh
Confidence            999988   88999999999999988  54322111      11112222   24444   7888888889999999874


Q ss_pred             C
Q 022213          268 D  268 (301)
Q Consensus       268 ~  268 (301)
                      .
T Consensus       284 ~  284 (447)
T PRK00451        284 K  284 (447)
T ss_pred             H
Confidence            3

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=3.2e-18  Score=155.36  Aligned_cols=169  Identities=19%  Similarity=0.247  Sum_probs=125.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~  160 (301)
                      ....|++.++++..        .+..+++++++.++..++ .++++||+|+++.|.|.+...    .+...|+++++++.
T Consensus        51 ~~~~Le~~lA~l~g--------~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~  121 (377)
T PRK07671         51 TRAALEELIAVLEG--------GHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT  121 (377)
T ss_pred             HHHHHHHHHHHHhC--------CCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence            35788899998872        233455555677887665 577899999999999984432    34457888888864


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|....+.  .  ++. +. 
T Consensus       122 -------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~--~--p~~-~g-  185 (377)
T PRK07671        122 -------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ--S--PIS-LG-  185 (377)
T ss_pred             -------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC--C--hhh-hC-
Confidence                   4889999999889999999999999999988   888888899999999999999764332  1  121 22 


Q ss_pred             CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                        ..|++.|+||.++.++ .-.|++++.++       +++++++....
T Consensus       186 --~Divv~S~sK~l~G~~~~~~G~~v~~~~-------~l~~~~~~~~~  224 (377)
T PRK07671        186 --ADIVLHSATKYLGGHSDVVAGLVVVNSP-------ELAEDLHFVQN  224 (377)
T ss_pred             --CeEEEecCcccccCCccceeEEEEeCcH-------HHHHHHHHHHH
Confidence              2399999999988664 34566665442       46666665543

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.80  E-value=2.7e-18  Score=154.93  Aligned_cols=188  Identities=15%  Similarity=0.144  Sum_probs=133.9

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC--CEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      ..+++.+.+++....... ...|.  .-...+|+.+++++      +++++  .|++++|+++++..++.+++.+||+|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~la~~~------~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi   78 (355)
T TIGR03301         8 LSTSATVRDAMLVDWCHW-DSEFN--DVTDQVRDRLLALA------GGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLL   78 (355)
T ss_pred             CCCCHHHHHHhhhhccCC-CHHHH--HHHHHHHHHHHHHh------cCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEE
Confidence            345667777776532211 11232  22456777777777      23333  688899999999999999998888877


Q ss_pred             EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC--ccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN--TAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      +..+.+.+  +...++..|.+++.++.+.  ++.+|++.+++.++++  .+.+++++++||||...+   +++|+++|++
T Consensus        79 ~~~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~  153 (355)
T TIGR03301        79 VLINGAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARS  153 (355)
T ss_pred             EECCCchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHH
Confidence            66655543  4566778899999888743  4568999999988653  456778899999999998   8899999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeC
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTND  268 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~  268 (301)
                      |++++|+|++++...    .+..+..++   ..++++|++|++ +.+|  +||+++++
T Consensus       154 ~~~~livD~~~s~g~----~~~~~~~~~---~d~~~~s~~K~l~~~~G--~g~~~~~~  202 (355)
T TIGR03301       154 HGAVLIVDAMSSFGA----IPIDIEELD---VDALIASANKCLEGVPG--FGFVIARR  202 (355)
T ss_pred             cCCEEEEEeccccCC----cccchhhcC---ccEEEecCCcccccCCc--eeEEEECH
Confidence            999999998776421    222333332   238899999985 4456  79999854

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.80  E-value=2.5e-18  Score=157.90  Aligned_cols=233  Identities=15%  Similarity=0.099  Sum_probs=150.2

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..++..+|||..|.-..+-.. .++.+.+++.++++...  .+... ...+...++++.+.+..    ..+.++++++++
T Consensus        36 d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~sGs  107 (403)
T PRK05093         36 DQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLW--HISNV-FTNEPALRLAKKLIDAT----FAERVFFANSGA  107 (403)
T ss_pred             eCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcC--cccCc-cCCHHHHHHHHHHHhhC----CCCEEEEeCchH
Confidence            345788999977621111123 56788899988886421  11111 11223345555554422    236999999999


Q ss_pred             HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCCCCCCHHHHHhh
Q 022213          118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERNWEVDLDAVEAL  176 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~~~~~~~l~~~  176 (301)
                      +|.+.+++....        ..++|+..+-+|++........ +.            ++..++.       .|++.+++.
T Consensus       108 eA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~  180 (403)
T PRK05093        108 EANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAV  180 (403)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHH
Confidence            999999986521        2357888888887753322111 11            1111111       378999988


Q ss_pred             cccCccEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213          177 ADKNTAAMVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       177 ~~~~~~~v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  254 (301)
                      +.++++++++. |.||+|.++  +.+.+++|.++|++||+++|+||+|..+.+.+.. .+...++...+   +.||||++
T Consensus       181 l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd---i~s~sK~l  255 (403)
T PRK05093        181 IDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYMHYGVTPD---ILTSAKAL  255 (403)
T ss_pred             hcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhhcCCCCC---EEEecccc
Confidence            87666666655 888887765  8899999999999999999999999988776642 22222222222   45899998


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCccccccc
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQVC  299 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~  299 (301)
                      + +|+|+||+++++        ++++.++.. .....+.+++.|.+
T Consensus       256 ~-~G~rig~vv~~~--------~i~~~l~~~~~~~t~~~~~~~~~a  292 (403)
T PRK05093        256 G-GGFPIGAMLTTA--------EIASHFKVGTHGSTYGGNPLACAV  292 (403)
T ss_pred             c-CCcceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHH
Confidence            7 899999999854        466776653 22233567777754

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.80  E-value=8.9e-19  Score=147.43  Aligned_cols=246  Identities=18%  Similarity=0.170  Sum_probs=174.8

Q ss_pred             hcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCC-hHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHHHHHH
Q 022213           18 KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRT-AVEAEDAIVDAVRSG-KFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        18 ~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~-~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      ..++++.++.+.+...++    ..+..+||++|.....-.-|. .+.+.++-.+...+. -.++|-|-.|++.++++.++
T Consensus        10 ~~a~p~~vf~~~~~y~~d----~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~e   85 (410)
T KOG1412|consen   10 PVAPPIEVFKLNASYGED----LDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATE   85 (410)
T ss_pred             ccCChHHHHhhHHHhccc----CCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHH
Confidence            356777777776654433    367789999995543211111 133433333332222 25689999999999999999


Q ss_pred             HHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcC-ceEEEeecCCCCCCCCCH
Q 022213           96 YLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQ-VEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~  170 (301)
                      ++-......+..+++  +=+-++|.|+..+...+..  +...|.+..|+|.++..+++.+| ..+..++....+.-.+|+
T Consensus        86 l~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~  165 (410)
T KOG1412|consen   86 LLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDL  165 (410)
T ss_pred             HhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecH
Confidence            986544444556665  3356667788777766632  45679999999999999999999 556666665555667999


Q ss_pred             HHHHhhcccCc-cE-EEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC--CCccccCCC-CCE
Q 022213          171 DAVEALADKNT-AA-MVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY--TPMGLFGSI-VPV  244 (301)
Q Consensus       171 ~~l~~~~~~~~-~~-v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~-~~v  244 (301)
                      +.+...++..+ .. +++..+ +||||+..+.++|.+|+++.++.+++.+.|-+|..+.-++...  +.+..+..+ ..+
T Consensus       166 e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~  245 (410)
T KOG1412|consen  166 EGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFEL  245 (410)
T ss_pred             HHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeE
Confidence            99988886533 33 344444 9999999999999999999999999999999999988764322  222222222 358


Q ss_pred             EEEecCcccCCCCcceeEEEEee
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +++.||+|.||+.+-|+|.+.+-
T Consensus       246 fv~QSFaKNfGlYneRvGnltvv  268 (410)
T KOG1412|consen  246 FVCQSFAKNFGLYNERVGNLTVV  268 (410)
T ss_pred             EEEhhhhhhcccccccccceEEE
Confidence            99999999999999999996443

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.80  E-value=3.8e-18  Score=154.91  Aligned_cols=190  Identities=18%  Similarity=0.172  Sum_probs=136.4

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP  137 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~  137 (301)
                      .++++.+.+++.+..... ...|.  .-..++|+.+++++.    ..-+.+.|++++++++++..++.++..+||.|+++
T Consensus        14 ~~~~~~~~~a~~~~~~~~-~~~~~--~~~~~~~~~l~~l~~----~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~   86 (368)
T PRK13479         14 LTTSRTVREAMLRDWGSW-DDDFN--ALTASVRAKLVAIAT----GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVP   86 (368)
T ss_pred             CCCCHHHHHHhCCCCCCC-ChHHH--HHHHHHHHHHHHHhC----CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence            345566666655433111 11122  134677777777772    11123568899999999999999999999999999


Q ss_pred             CCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213          138 RPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR  213 (301)
Q Consensus       138 ~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~  213 (301)
                      .++|.+.  ...++..|++++.++...  ++.+|++.+++.+++  +++.+++++|+||||...+   +++|+++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~  161 (368)
T PRK13479         87 DNGAYGARIAQIAEYLGIAHVVLDTGE--DEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHG  161 (368)
T ss_pred             eCCchHHHHHHHHHHcCCcEEEEECCC--CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcC
Confidence            8888765  367788999999998753  345899999998864  3567889999999999999   788889999999


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeC
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTND  268 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~  268 (301)
                      +++|+|+++..   +. .+..+..++.+   +++.|++|++ +.+|  +||++++.
T Consensus       162 ~~livDa~~~~---g~-~~~~~~~~~~d---~~v~s~~K~l~g~~G--~G~l~~~~  208 (368)
T PRK13479        162 KRLIVDAMSSF---GA-IPIDIAELGID---ALISSANKCIEGVPG--FGFVIARR  208 (368)
T ss_pred             CEEEEEccccc---CC-ccccccccCce---EEEecCccccccCCC--ceEEEECH
Confidence            99999966533   22 22333333222   7778999975 5577  69999854

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=4.8e-18  Score=155.00  Aligned_cols=168  Identities=17%  Similarity=0.191  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~  161 (301)
                      ..+|++.+|++..      .+ +.+ ++++++.++..++. ++++||+|+++.|.|.+..    ..++..|+++.+++. 
T Consensus        56 ~~~le~~lA~l~g------~~-~~v-~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-  125 (390)
T PRK08064         56 REALEDIIAELEG------GT-KGF-AFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM-  125 (390)
T ss_pred             HHHHHHHHHHHhC------CC-CeE-EECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC-
Confidence            5688999999872      23 344 45555788988886 6789999999999998432    445668999998875 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++.+++.+++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .++ .++  
T Consensus       126 ------~d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~~~-~~g--  189 (390)
T PRK08064        126 ------TNLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ----KPL-DLG--  189 (390)
T ss_pred             ------CCHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----Cch-hhC--
Confidence                  3688999999889999999999999999998   788888899999999999999864321    112 122  


Q ss_pred             CCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          242 VPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       ..+++.|+||.++. +|...|++++.+       ++++++++....
T Consensus       190 -~Divv~S~tK~~~G~~~~laG~~v~~~-------~~~~~~l~~~~~  228 (390)
T PRK08064        190 -ADVVLHSATKFLAGHSDVLAGLAVVKD-------EELAQKLYFLQN  228 (390)
T ss_pred             -CcEEEeecceeccCCccceeEEEEeCC-------HHHHHHHHHHHH
Confidence             23889999999765 456678877643       247777766654

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.80  E-value=4.6e-18  Score=155.28  Aligned_cols=211  Identities=14%  Similarity=0.143  Sum_probs=143.3

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHhc-------CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-------GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ++|+..+.   -.+...+++++++.+++++       ... .|+...++.+|++.+|+++..       .+.+++++|.+
T Consensus         1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~-~yg~~~~~~~LE~~lA~~~g~-------e~al~~~sG~~   69 (392)
T PLN03227          1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRG-FYGTIDAHLELEQCMAEFLGT-------ESAILYSDGAS   69 (392)
T ss_pred             CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCccccc-ccCChHHHHHHHHHHHHHhCC-------CcEEEecCcHH
Confidence            35666653   3466778899998888875       233 377766788999999999832       24566666655


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-----------cCccEEEE
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-----------KNTAAMVI  186 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~v~l  186 (301)
                      ... .++.+++++||.|+++++.|.++...+...+.++..++....    .+++.+.+.+.           .+++.|++
T Consensus        70 a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~  144 (392)
T PLN03227         70 TTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVV  144 (392)
T ss_pred             HHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence            555 788889999999999999999987777777777776654211    13333333332           24677888


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--C-CCCEEEEecCcccCCCCcceeEE
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--S-IVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~-~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      ..+.||+|.+.+   +++|.++|++||+++|+||+|..-.++.........++  + .+..|++.|+||.++   .+.|+
T Consensus       145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~  218 (392)
T PLN03227        145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGM  218 (392)
T ss_pred             cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcE
Confidence            889999999999   78889999999999999999983222211011111111  1 122488889999865   44488


Q ss_pred             EEeeCCCCcccchhHHHHHHhh
Q 022213          264 LVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ++++.        ++++.++..
T Consensus       219 v~~~~--------~~~~~~~~~  232 (392)
T PLN03227        219 TVGSE--------EVVDHQRLS  232 (392)
T ss_pred             EecCH--------HHHHHHHHh
Confidence            87632        466666543

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.80  E-value=3.8e-18  Score=154.01  Aligned_cols=177  Identities=20%  Similarity=0.207  Sum_probs=129.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEE
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVR  156 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~  156 (301)
                      +.+|+. ....+|++++|++.        ..+++++++|+++|+.+++. ++++||+|+++.+.|.+...++....... 
T Consensus        48 Y~R~~~-p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-  116 (364)
T PRK07269         48 YTRTKN-PTRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG-  116 (364)
T ss_pred             eeCCCC-ccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-
Confidence            344555 35789999999998        46799999999999999984 66899999999999986554433221100 


Q ss_pred             EeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213          157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                      .+..    .+..|++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.    .++.
T Consensus       117 ~~~~----~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~----~pl~  185 (364)
T PRK07269        117 RFHF----TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ----RPIE  185 (364)
T ss_pred             cEEE----EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh
Confidence            0110    1236889999999889999999999999999997   889999999999999999998653321    2222


Q ss_pred             ccCCCCCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          237 LFGSIVPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      . ..+   |+++|++|.++.+|- =.|++++.+.       ++.++++...
T Consensus       186 ~-gaD---ivv~S~tK~l~g~~d~~gG~v~~~~~-------~l~~~~~~~~  225 (364)
T PRK07269        186 L-GAD---IVLHSATKYLSGHNDVLAGVVVTNDL-------ELYEKLFYNL  225 (364)
T ss_pred             h-CCc---EEEecCceeccCCCcccceEEEeCcH-------HHHHHHHHHH
Confidence            1 222   899999999876543 3577776443       4666665443

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.79  E-value=5.9e-18  Score=153.75  Aligned_cols=167  Identities=19%  Similarity=0.215  Sum_probs=125.6

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~  161 (301)
                      ...|++.++++.        ..+..+++++++.|+.+++ .++++||+|++++|.|.+..    ..+...|+++.+++. 
T Consensus        52 ~~~Le~~la~l~--------g~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-  121 (380)
T PRK06176         52 RFALEELIADLE--------GGVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-  121 (380)
T ss_pred             HHHHHHHHHHHh--------CCCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-
Confidence            678888888887        2334566666678998766 56799999999999997543    345667888887764 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++.+++++++++++|++.+|+||||.+.+   +++|+++|+++|+++|+|++|+...+..    ++ .+..+
T Consensus       122 ------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~----p~-~~gaD  187 (380)
T PRK06176        122 ------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN----PL-LLGAD  187 (380)
T ss_pred             ------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC----cc-ccCCC
Confidence                  4789999999888999999999999999998   8888899999999999999998654321    22 12222


Q ss_pred             CCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          242 VPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                         +++.|++|.++.+|- -.|+++..+       +++.++++...
T Consensus       188 ---ivv~S~tK~l~g~~d~~gG~vv~~~-------~~~~~~~~~~~  223 (380)
T PRK06176        188 ---IVVHSGTKYLGGHSDVVAGLVTTNN-------EALAQEIAFFQ  223 (380)
T ss_pred             ---EEEecCceeccCCccceeeEEEecH-------HHHHHHHHHHH
Confidence               899999999887764 455565433       23555555443

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.79  E-value=3.8e-18  Score=157.43  Aligned_cols=218  Identities=15%  Similarity=0.085  Sum_probs=140.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      .+..|+|..++.      ++++.+.+++...+...-     ...|. .......+.+...+.+.+.+|  .+..+|++++
T Consensus        24 ~~~~~~l~~~~n------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~i~~~s   95 (416)
T PRK00011         24 QEEHIELIASEN------FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--AEYANVQPHS   95 (416)
T ss_pred             HhcCeeeecccC------cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceeeecCC
Confidence            467899988862      256788888766542110     00111 111122232312223333333  3445566655


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH-----HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcC
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEG-----IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~  188 (301)
                       +++++..++.+++++||+|+++.|+|.++..     .....|.+++.+++++ .++.+|++++++.+++ +++++++++
T Consensus        96 -gt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~  173 (416)
T PRK00011         96 -GSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGA  173 (416)
T ss_pred             -chHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECC
Confidence             5789999999999999999999999975421     1223456777777643 2467999999998865 788888876


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ++++  ...+   +++|+++|+++|+++|+|++|.. +.+.+..+..+.  .   -.++++|+||++  +|.|.||++++
T Consensus       174 ~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~---~di~~~S~~K~l--~g~~gg~i~~~  241 (416)
T PRK00011        174 SAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--H---ADVVTTTTHKTL--RGPRGGLILTN  241 (416)
T ss_pred             CcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--C---CcEEEecCCcCC--CCCCceEEEeC
Confidence            6554  4555   88999999999999999999853 222222222222  1   127799999974  78999999985


Q ss_pred             CCCCcccchhHHHHHHhhhc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~  287 (301)
                      ++       +++++++....
T Consensus       242 ~~-------~~~~~l~~~~~  254 (416)
T PRK00011        242 DE-------ELAKKINSAVF  254 (416)
T ss_pred             CH-------HHHHHHHHHhC
Confidence            43       47777766543

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=8.9e-18  Score=154.60  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~  160 (301)
                      ...+|++.+|++..        .+..++|+++++|+.+++.+++++||+|+++...|.+....+    ...|+++++++.
T Consensus        65 ~~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  136 (433)
T PRK08134         65 TVAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP  136 (433)
T ss_pred             HHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence            36788999998872        345799999999999999999999999999999998654433    558999999875


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                      .       |++.+++++++++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|.++..-..    ..++ .++-
T Consensus       137 ~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl-~~Ga  201 (433)
T PRK08134        137 G-------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-EHGA  201 (433)
T ss_pred             C-------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcCC
Confidence            2       789999999999999999999999999999   89999999999999999999875332    2222 2222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +   +++.|.+|.++.+|-.+|.+++.
T Consensus       202 D---~vv~S~tK~l~g~g~~~gG~v~~  225 (433)
T PRK08134        202 D---LVYHSATKFLGGHGTAIGGVLVD  225 (433)
T ss_pred             C---EEEeccccccCCCCCceEEEEEe
Confidence            2   88999999998899888887763

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.79  E-value=4.4e-18  Score=154.21  Aligned_cols=162  Identities=16%  Similarity=0.164  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCCC--CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch--HHHHHhcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSA--DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY--EGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~  162 (301)
                      .++|+.+++++      +.++  +.|++|+|+|++++.++.++..+||.+++..+++++.  ...++..|.+++.++.+.
T Consensus        38 ~~~r~~la~l~------~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~  111 (363)
T TIGR02326        38 EQIRQQLLALA------TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE  111 (363)
T ss_pred             HHHHHHHHHHh------CCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC
Confidence            45567777766      3443  4799999999999999999998998888776666544  456788899999998753


Q ss_pred             CCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          163 ERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                        +..+|++.+++.+++  +++.+++++++||||..++   +++|+++|+++|+++|+|++++.   + ..+.++..++.
T Consensus       112 --~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~---g-~~~~~~~~~~~  182 (363)
T TIGR02326       112 --VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSF---G-GIPIDIAELHI  182 (363)
T ss_pred             --CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEccccc---c-CcccchhhcCc
Confidence              445899999998875  3466888999999999999   88999999999999999988764   2 23334444433


Q ss_pred             CCCEEEEecCcccCC-CCcceeEEEEeeC
Q 022213          241 IVPVITLGSISKRWL-VPGWRFGWLVTND  268 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~-~~G~rvG~~~~~~  268 (301)
                      +   +++.|++|+++ .+|  +||++++.
T Consensus       183 D---~~~~s~~K~l~~p~G--~G~l~~~~  206 (363)
T TIGR02326       183 D---YLISSANKCIQGVPG--FGFVIARQ  206 (363)
T ss_pred             c---EEEecCccccccCCc--ceEEEECH
Confidence            3   88899999863 356  79999854

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.79  E-value=5e-18  Score=155.58  Aligned_cols=235  Identities=13%  Similarity=0.056  Sum_probs=151.5

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++++..|--.. .--...+.+.+++.++++....  +.. ....+....+++.+....    ..+.++++++++
T Consensus        36 d~~G~~~lD~~~g~~~~-~lGh~~p~v~~ai~~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~----~~~~~~~~~SGs  107 (396)
T PRK04073         36 DPEGNRYMDMLSAYSAV-NQGHRHPKIIQALKDQADKVTL--TSR-AFHSDQLGPWYEKVAKLT----GKDMVLPMNTGA  107 (396)
T ss_pred             ECCCCEEEEcCCCHHhc-cCCCCCHHHHHHHHHHHhhccc--ccc-ccCCHHHHHHHHHHHhcC----CCCeEEEcCChH
Confidence            44688899997773211 1112457888999988874321  111 112233344445444321    246899999999


Q ss_pred             HHHHHHHHHhcC---------CC-CEEEEcCCCCcchHHHH-HhcCce------------EEEeecCCCCCCCCCHHHHH
Q 022213          118 QAVEVILSVLAR---------PG-ANVLLPRPGWPYYEGIA-QRKQVE------------VRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       118 ~al~~~~~~l~~---------~g-d~Vl~~~p~~~~~~~~~-~~~g~~------------~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +|++.+++....         +| ++|+...-+|++..... ...+..            +..++.       .|++.++
T Consensus       108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~  180 (396)
T PRK04073        108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALK  180 (396)
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHH
Confidence            999999997742         34 67888877787653222 222211            111111       2788999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYH-HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~-~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      +.++++++++++..++||+|.+++.+ .+++|.++|++||+++|+||+|..+.+.+..+ .....+...+++   ++||.
T Consensus       181 ~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~pdi~---~~sK~  256 (396)
T PRK04073        181 AAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVTPDMY---ILGKA  256 (396)
T ss_pred             HhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-HhhhcCCCCCEE---Eeccc
Confidence            98877788888888899999998764 69999999999999999999999876544322 111222222333   57999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++++|+|+||++++.        ++++.+..... ...+.+++.|.+
T Consensus       257 lg~gg~~ig~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aa  295 (396)
T PRK04073        257 LGGGVFPISCVAANR--------DILGVFTPGSHGSTFGGNPLACAV  295 (396)
T ss_pred             ccCCCCcceEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHH
Confidence            999999999999843        46666654322 233456666543

>PRK05968 hypothetical protein; Provisional

Probab=99.79  E-value=1.2e-17  Score=152.40  Aligned_cols=165  Identities=19%  Similarity=0.210  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~  161 (301)
                      ..+|++.+++++.        .+..+++++++.|+..++.+++++||+|+++.+.|.+.    ...+...|+++.+++. 
T Consensus        65 ~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-  135 (389)
T PRK05968         65 VRAFEEMLAKLEG--------AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG-  135 (389)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC-
Confidence            5789999999872        23456667778999999999999999999999999863    3456678999988864 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++.+++.+ +++++|++++|+|+++..   .++++|+++|+++|+++|+|++|....+..    ++. ++. 
T Consensus       136 ------~d~~~l~~~i-~~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~a~~~~~~----p~~-~g~-  199 (389)
T PRK05968        136 ------RDEEAVAKAL-PGAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSWASPVFQR----PIT-LGV-  199 (389)
T ss_pred             ------CCHHHHHHhc-ccCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcchhccC----chh-cCC-
Confidence                  3788999887 568999998777666544   569999999999999999999998755332    121 121 


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                        .+++.|+||.++.+| .+.|+++.+.        +++++++..
T Consensus       200 --Divv~S~tK~l~g~~~~~gG~i~~~~--------~~~~~l~~~  234 (389)
T PRK05968        200 --DLVIHSASKYLGGHSDTVAGVVAGSK--------EHIARINAE  234 (389)
T ss_pred             --cEEEeeccccccCCCCeEEEEEEECH--------HHHHHHHHH
Confidence              288889999988865 5788887532        366666653

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.78  E-value=1.6e-17  Score=148.91  Aligned_cols=216  Identities=22%  Similarity=0.209  Sum_probs=169.6

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ++++++||+.+|.   ..|...+.+.+++.+.++...      -.-++...-+.+|.+.+|+|+        ..+..++.
T Consensus        37 ~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--------g~e~al~f  105 (388)
T COG0156          37 DGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--------GAEAALLF  105 (388)
T ss_pred             CCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--------CCCcEEEE
Confidence            3678999999994   457777889999988887521      111333333678889999998        45688888


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEc
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVII  187 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~  187 (301)
                      +++..|...++.+|++++|.|+...-.|.+....++..+.+.+.+..       .|++.|++.+.+      +.+.|++.
T Consensus       106 ~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~Ivte  178 (388)
T COG0156         106 SSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTE  178 (388)
T ss_pred             cccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEe
Confidence            88899999999999999999999999999999999988988887764       578999988865      23556666


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--CCCCEEEEecCcccCCCCcceeEEEE
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      ..-...|.+.+   +++|++++++|++++++||+|+.-.+++..--....++  .....|+++||||+||..|   ||++
T Consensus       179 gVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~  252 (388)
T COG0156         179 GVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIA  252 (388)
T ss_pred             ccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceee
Confidence            77888999999   99999999999999999999999888743322222232  2334699999999999998   9998


Q ss_pred             eeCCCCcccchhHHHHHHhhhc
Q 022213          266 TNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      ++.        .+++.+++...
T Consensus       253 g~~--------~~~d~L~~~ar  266 (388)
T COG0156         253 GSA--------ALIDYLRNRAR  266 (388)
T ss_pred             CcH--------HHHHHHHHhCC
Confidence            754        48888888643

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.78  E-value=3.8e-17  Score=149.04  Aligned_cols=190  Identities=22%  Similarity=0.279  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      +.-.+++.++++...   |....+..+||+++++++.        .++.++++|+++|+..+++++ +++||+|+++.++
T Consensus        10 ~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~   78 (380)
T TIGR03588        10 QDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPIT   78 (380)
T ss_pred             HHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence            344677777776543   3333457899999999983        245677778999999999999 7899999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMV  216 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i  216 (301)
                      |..+...+...|+++++++++++ ++.+|++.+++.++    +++++++++   |++|...+   +++|.++|+++|+++
T Consensus        79 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~l  151 (380)
T TIGR03588        79 FVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKI  151 (380)
T ss_pred             hHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEE
Confidence            99998888999999999998653 46799999999998    677877754   56898887   888899999999999


Q ss_pred             EEccCCcccc-cCCCCCCCccc--cCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          217 VADEVYGHLT-FGSIPYTPMGL--FGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       217 i~D~~y~~~~-~~~~~~~~~~~--~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      |+|++++... +.+.   .+..  +.    -+.+.|++  |.++.+  ..|+++..++       ++.++++..
T Consensus       152 I~D~a~a~g~~~~~~---~~g~~~~~----d~~~~S~~~~K~~~~~--~GG~v~~~~~-------~~~~~~~~~  209 (380)
T TIGR03588       152 IEDASHALGAEYGGK---PVGNCRYA----DATVFSFHPVKIITTA--EGGAVTTNDE-------ELAERMRLL  209 (380)
T ss_pred             EEECCCcccCccCCE---eCCCcccc----ceEEEecCCCCccccc--CceEEEECCH-------HHHHHHHHH
Confidence            9999998643 3332   1222  22    26677766  876543  4677776543       466666654

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.78  E-value=2.1e-17  Score=145.96  Aligned_cols=188  Identities=18%  Similarity=0.203  Sum_probs=149.6

Q ss_pred             CChHHHHHHHHHHHhcC-----CCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh--cC
Q 022213           59 RTAVEAEDAIVDAVRSG-----KFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL--AR  129 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l--~~  129 (301)
                      ++.+.+.++|...+...     ..+.|+.  ...+.+.|+.||+++      ++++++|++|+|+||+.++++...  ..
T Consensus        12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a~   85 (386)
T COG1104          12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALAY   85 (386)
T ss_pred             CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCCcHHHHHHHHhhHHhh
Confidence            34567888887776531     1333432  123677889999998      678899999999999999999973  22


Q ss_pred             ----CCCEEEEcCCCCcchHHHHHhc---CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          130 ----PGANVLLPRPGWPYYEGIAQRK---QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       130 ----~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                          .|.+|+++.-.|+.....++.+   |.++.+++++.  +..+|+++|++++++++.+|.+...||.||++++   +
T Consensus        86 ~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I  160 (386)
T COG1104          86 RNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---I  160 (386)
T ss_pred             hcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---H
Confidence                4789999999999876666655   99999999865  3459999999999999999999999999999999   9


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++|.++|+++++++.+|.+.+.    |+-+..+..+.-+   +...|-+|.+|..|  +|.+++
T Consensus       161 ~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~~vD---~ls~SaHK~~GpkG--iGaLyv  215 (386)
T COG1104         161 AEIGEICKERGILFHVDAVQAV----GKIPIDLEELGVD---LLSFSAHKFGGPKG--IGALYV  215 (386)
T ss_pred             HHHHHHHHHcCCeEEEehhhhc----CceeccccccCcc---eEEeehhhccCCCc--eEEEEE
Confidence            9999999999999999999987    5555555443322   66779999988888  777776

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.78  E-value=3e-17  Score=149.05  Aligned_cols=192  Identities=20%  Similarity=0.181  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHHhcCC--CCCCCCCCCCH----HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC----C
Q 022213           61 AVEAEDAIVDAVRSGK--FNCYATNSGIP----PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR----P  130 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~--~~~Y~~~~g~~----~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~----~  130 (301)
                      .+.+.+++.+.+....  ...|   .+..    ++++.+++++    |  .+.+++++++|+++++..+++++.+    +
T Consensus        33 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~----g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~  103 (371)
T PRK13520         33 HPIARKAHEMFLETNLGDPGLF---PGTAKLEEEAVEMLGELL----H--LPDAYGYITSGGTEANIQAVRAARNLAKAE  103 (371)
T ss_pred             hHHHHHHHHHHHhcCCCCcccC---ccHHHHHHHHHHHHHHHh----C--CCCCCeEEecCcHHHHHHHHHHHHhhccCC
Confidence            4566788877776321  1112   1333    4555555555    3  4556789999999999999887754    5


Q ss_pred             CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          131 GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       131 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      ||+|++.++.|..+...++..|.+++.++.+  .++.+|++.+++.++++++.+++++++|+||.+.+   +++|.++|+
T Consensus       104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~  178 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIAL  178 (371)
T ss_pred             CceEEecCcchHHHHHHHHHcCceEEEecCC--CCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHH
Confidence            7999999999999988888899999988864  34568999999999888888888889999999999   888888899


Q ss_pred             hCCCeEEEccCCcccccCC-CCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          211 KLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++|+++++|++|..+...- .....+. +....-..+..|.+|. +++|.++|++++.+
T Consensus       179 ~~g~~livD~a~~~~~~~~~~~~~~~~-~~~~~vd~~~~s~~K~-~~a~~~~G~~~~~~  235 (371)
T PRK13520        179 ENGIFLHVDAAFGGFVIPFLDDPPNFD-FSLPGVDSITIDPHKM-GLAPIPAGGILFRD  235 (371)
T ss_pred             HcCCCEEEEecchhHHHHhhcCCCCcc-ccCCCCceEEECCccc-cCccCCceEEEEcC
Confidence            9999999999998654210 1111111 1110111444578885 77889999988754

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=2.2e-17  Score=152.23  Aligned_cols=156  Identities=19%  Similarity=0.200  Sum_probs=127.6

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~  161 (301)
                      ...|++.++++.        ..+..+++++++.|+..++++++++||+|+++.+.|.+..    ..+...|+++++++. 
T Consensus        65 ~~~le~~lA~l~--------g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~-  135 (427)
T PRK05994         65 NAVLEERVAALE--------GGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA-  135 (427)
T ss_pred             HHHHHHHHHHHh--------CCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC-
Confidence            467888888887        2346889999999999999999999999999999998643    345678999988864 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++.+++.+++++++|++++|+||+|.+++   +++|+++|+++|+++|+|+++.....    ..++ .++.+
T Consensus       136 ------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~----~~pl-~~gaD  201 (427)
T PRK05994        136 ------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL----IRPI-EHGAD  201 (427)
T ss_pred             ------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc----CCcc-ccCCc
Confidence                  3788999999888999999999999999999   88889999999999999999985321    1222 12222


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEee
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                         +++.|++|.++.+|-.+|.+++.
T Consensus       202 ---ivv~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        202 ---IVVHSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             ---EEEEcCccccCCCCCcEEEEEEe
Confidence               88999999998888778877663

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.77  E-value=3.9e-17  Score=147.26  Aligned_cols=186  Identities=20%  Similarity=0.245  Sum_probs=138.9

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcch
Q 022213           66 DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYY  144 (301)
Q Consensus        66 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~  144 (301)
                      +++.+.+.++.   |.......++++.+++++.        .+++++++|+++++..++.++ .++||+|+++.++|..+
T Consensus         3 ~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~   71 (352)
T cd00616           3 EAVEEVLDSGW---LTLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT   71 (352)
T ss_pred             HHHHHHHHcCC---ccCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH
Confidence            45556665443   3333357899999999982        357888999999999999999 58999999999999999


Q ss_pred             HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc
Q 022213          145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH  224 (301)
Q Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~  224 (301)
                      ...+...|.+++.++++. .++.+|++.+++.++++++++++++   ++|...+   +++|.++|+++|+++|+|++++.
T Consensus        72 ~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~  144 (352)
T cd00616          72 ANAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQAL  144 (352)
T ss_pred             HHHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCC
Confidence            888899999999998854 3567899999999988888888654   6899888   78888889999999999999985


Q ss_pred             ccc-CCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          225 LTF-GSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       225 ~~~-~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ... .+.   .+..+.    .+.+.|++  |.+  ++.+.|+++..++       ++.++++..
T Consensus       145 g~~~~~~---~~~~~~----d~~~~S~~~~K~~--~~~~gg~~~~~~~-------~~~~~~~~~  192 (352)
T cd00616         145 GATYKGR---KVGTFG----DAGAFSFHPTKNL--TTGEGGAVVTNDE-------ELAERARLL  192 (352)
T ss_pred             CCeECCE---EcccCc----ceeEEcCCCCCCC--cccCceEEEECCH-------HHHHHHHHH
Confidence            332 111   111111    25666766  876  4445688887542       466665544

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.77  E-value=2.5e-17  Score=149.70  Aligned_cols=169  Identities=18%  Similarity=0.214  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc------CCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA------RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL  160 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~  160 (301)
                      .++++.+++++      +++++++++++|+++++..++.++.      ++||+|++++++|.++...++..|++++.++.
T Consensus        62 ~~~~~~la~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~  135 (373)
T TIGR03812        62 EEVVGSLGNLL------HLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPL  135 (373)
T ss_pred             HHHHHHHHHHh------CCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence            45666666666      3566788999999999988877664      36799999999999998889999999999987


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC--C--CCCCCcc
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG--S--IPYTPMG  236 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~--~--~~~~~~~  236 (301)
                      +  .++.+|++++++.+++++..+++.+|+||||...+   +++|.++|+++|+++++|++|..+...  .  .....+.
T Consensus       136 ~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d  210 (373)
T TIGR03812       136 D--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD  210 (373)
T ss_pred             C--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence            5  34668999999998777765555668999999988   888888899999999999999865421  0  0111111


Q ss_pred             ccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ......+ .+..|.+| |++++.|+|+++..+
T Consensus       211 ~~~~~~d-~~~~s~~K-~~~~~~~~G~~~~~~  240 (373)
T TIGR03812       211 FSLPGVQ-SITIDPHK-MGLSPIPAGGILFRS  240 (373)
T ss_pred             ccCCCCC-EEEECccc-cCCCcCCceEEEEeC
Confidence            0000111 44568889 578888999877644

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.77  E-value=1.8e-17  Score=152.15  Aligned_cols=233  Identities=14%  Similarity=0.070  Sum_probs=149.1

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC-YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.++++..|--.. +.-...+.+.+++.++++...... +.......+|.+.++++.        ..++++++++++
T Consensus        38 ~~g~~~lD~~~~~~~~-~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs  108 (401)
T PRK00854         38 TDGNRYLDCLSAYSAV-NQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT--------GSHKVLPMNSGA  108 (401)
T ss_pred             CCCCEEEEcCcchhhc-cCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC--------CCCEEEEeCCcH
Confidence            4578889987763211 111235788899998887432211 111112344555565553        236899999999


Q ss_pred             HHHHHHHHHhcC---------CC-CEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHH
Q 022213          118 QAVEVILSVLAR---------PG-ANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       118 ~al~~~~~~l~~---------~g-d~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +|++.+++.+..         +| ++|++..-+|++....+...+..             +..++.       .|++.++
T Consensus       109 ~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le  181 (401)
T PRK00854        109 EAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALE  181 (401)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHH
Confidence            999999998852         23 68888888887653333222211             112211       4789999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      +.+.++++++++.+|+||+|.+++. +.+++|.++|++||+++|+||+|..+.+.+..+ .....+...++++   +||.
T Consensus       182 ~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D~~~---~~K~  257 (401)
T PRK00854        182 AAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL-AEEHEGIEADVTL---IGKA  257 (401)
T ss_pred             HHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh-HHhhcCCCCCEEE---eccc
Confidence            9998889999999999999999985 469999999999999999999998765544211 1111121223333   3799


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++...+|+||++++.        +++..++.... ...+.+++.|.+
T Consensus       258 l~gg~~~ig~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aa  296 (401)
T PRK00854        258 LSGGFYPVSAVLSNS--------EVLGVLKPGQHGSTFGGNPLACAV  296 (401)
T ss_pred             ccCCccCeEEEEEcH--------HHHhcccCCCCCCCCCcCHHHHHH
Confidence            876558999999844        36666653322 222345555543

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=2.9e-17  Score=148.87  Aligned_cols=161  Identities=19%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~  159 (301)
                      .+....++.+++.+..-.    ..+..++++++++|+..++.+++++||+|+++.|.|.++..    .++..|+++.+++
T Consensus        60 R~gnPt~~~Le~~la~le----~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd  135 (395)
T PRK05967         60 TRGTPTTDALCKAIDALE----GSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD  135 (395)
T ss_pred             CCCChHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence            334455555555554311    13345666668999999999999999999999999998764    4577899988875


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .       -+.+.+++++++++++|++++|+||++...+   +++|+++|+++|+++|+|++|....+.    .++. ++
T Consensus       136 ~-------~~~e~l~~al~~~TklV~lesPsNP~l~v~d---l~~I~~la~~~g~~vvVD~t~a~p~~~----~pl~-~G  200 (395)
T PRK05967        136 P-------EIGAGIAKLMRPNTKVVHTEAPGSNTFEMQD---IPAIAEAAHRHGAIVMMDNTWATPLYF----RPLD-FG  200 (395)
T ss_pred             C-------CCHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHhCCEEEEECCccCceec----ChhH-cC
Confidence            3       1347799999889999999999999865554   999999999999999999999864432    1221 23


Q ss_pred             CCCCEEEEecCcccCCC-CcceeEEEEe
Q 022213          240 SIVPVITLGSISKRWLV-PGWRFGWLVT  266 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~-~G~rvG~~~~  266 (301)
                      -+   |++.|.+|.++. .+.-.|+++.
T Consensus       201 aD---ivv~S~tKy~~Gh~d~~~G~v~~  225 (395)
T PRK05967        201 VD---ISIHAATKYPSGHSDILLGTVSA  225 (395)
T ss_pred             CC---EEEEecccccCCCCCeeEEEEEc
Confidence            33   999999999655 5677776654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.76  E-value=7.2e-17  Score=151.02  Aligned_cols=205  Identities=17%  Similarity=0.182  Sum_probs=149.9

Q ss_pred             ccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCC---CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213           47 LGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCY---ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI  123 (301)
Q Consensus        47 l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~  123 (301)
                      ++.|.|    ++..|+.+.+++.+...-..++.|   ...+|..+++.++.+++.+.+|.  +...+..++|+++.+..+
T Consensus        73 ~g~G~~----~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~--~~~~l~~~~GA~a~~~~l  146 (481)
T PRK04366         73 YPLGSC----TMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM--DAVTLQPAAGAHGELTGL  146 (481)
T ss_pred             ecCccc----CCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC--CceEEEeCcHHHHHHHHH
Confidence            566664    366777888877664211245567   34668889999999999887764  333455566666655533


Q ss_pred             --HH-HhcCCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccC
Q 022213          124 --LS-VLARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNV  196 (301)
Q Consensus       124 --~~-~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  196 (301)
                        ++ .+.++||    +|+++.|.|+.+...++..|++++.++++  .++.+|++.+++.++++++++++++|| |||..
T Consensus       147 ~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~  223 (481)
T PRK04366        147 LMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGEDTAALMLTNPN-TLGLF  223 (481)
T ss_pred             HHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc
Confidence              33 3356776    99999999999999999999999999874  346799999999998889999999988 99965


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213          197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTND  268 (301)
Q Consensus       197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~  268 (301)
                        ..++++|+++|+++|+++++|.++.....+.   .+...++-+   ++++|.+|+++.|    |-.+|++++++
T Consensus       224 --~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~---~~~~~~GaD---~~~~~~hK~l~~P~g~Ggp~~G~l~~~~  291 (481)
T PRK04366        224 --ERNILEIAEIVHEAGGLLYYDGANLNAILGK---ARPGDMGFD---VVHLNLHKTFSTPHGGGGPGSGPVGVKE  291 (481)
T ss_pred             --chHHHHHHHHHHHcCCEEEEEecChhhhccc---CCccccCCC---EEEEechhhcCCCCCCCCCCeeeeeehh
Confidence              3469999999999999999999985322211   122233322   8889999998765    45688887743

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.76  E-value=3.1e-17  Score=150.73  Aligned_cols=240  Identities=14%  Similarity=0.094  Sum_probs=152.2

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|--..+-... .+.+.+++.+++....  .++. ....+...++++.+.+..    ..++++++++++
T Consensus        35 d~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGs  106 (406)
T PRK12381         35 DQQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFW--HTGN-GYTNEPVLRLAKKLIDAT----FADRVFFCNSGA  106 (406)
T ss_pred             eCCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcc--cccC-ccCCHHHHHHHHHHHhhC----CCCeEEEcCCcH
Confidence            4468889999876221111233 6788899998886321  1111 112233444555554321    246999999999


Q ss_pred             HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCceEE----EeecCC--CCCCCCCHHHHHhhcccCccE
Q 022213          118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLP--ERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      +|++.+++....        ...+|+..+.+|++........+....    +.++.+  ....-.|++.+++.+++++.+
T Consensus       107 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aa  186 (406)
T PRK12381        107 EANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCA  186 (406)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeE
Confidence            999999998631        347899999999987543333222110    001100  001124788999988766666


Q ss_pred             EEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          184 MVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       184 v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      +++ .|.|++|-+.  +.+.+++|.++|++||+++|+||+|..+.+.+.. .....++-..++   .++||.++ +|+|+
T Consensus       187 vii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~-~~~~~~~v~pDi---~t~sK~l~-gG~~i  260 (406)
T PRK12381        187 VIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGEL-YAYMHYGVTPDV---LTTAKALG-GGFPI  260 (406)
T ss_pred             EEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcch-hhhHhhCCCCCE---EEehhhhh-CCCce
Confidence            655 7999998765  6899999999999999999999999887665542 222222222233   49999976 89999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          262 GWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       262 G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||++++.        ++++.+..... ...+.+++.|.+
T Consensus       261 g~~~~~~--------~~~~~~~~~~~~~t~~~~pl~~aa  291 (406)
T PRK12381        261 GAMLTTE--------KCASVMTVGTHGTTYGGNPLASAV  291 (406)
T ss_pred             EEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHH
Confidence            9999853        47776654322 223455555543

>PRK07505 hypothetical protein; Provisional

Probab=99.76  E-value=9.2e-17  Score=147.55  Aligned_cols=217  Identities=18%  Similarity=0.170  Sum_probs=139.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCC-----CCCCHHHHHHHHHHHhhhCCCCCCCCCEE
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYAT-----NSGIPPARRAIADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~  111 (301)
                      ..+++.++||...++.   .+..++.+.+++.++++... ...+..     .....++++.+++++    +  .   +.+
T Consensus        42 d~~g~~~ld~~s~~~l---gl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~----~--~---~~~  109 (402)
T PRK07505         42 LADGHTFVNFVSCSYL---GLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF----G--A---SVL  109 (402)
T ss_pred             ecCCceEEEeecCCcc---CCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh----C--C---CEE
Confidence            3457889999776532   33667899999999887421 111111     112344555555554    2  2   555


Q ss_pred             EcCCHHHHHHHHHHHhc----CCCC-EEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          112 VTLGCKQAVEVILSVLA----RPGA-NVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~----~~gd-~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      ++++++++.+.++..+.    .+|+ .|++.+..|++..   ......+.+++.++.       .|++.+++.+++++++
T Consensus       110 ~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~  182 (402)
T PRK07505        110 TFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTV  182 (402)
T ss_pred             EECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCE
Confidence            55566788887776543    2232 3656665554321   112223456666654       4889999988777789


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCccccC--CCCCEEEEecCcccCCCCcce
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMGLFG--SIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~~~~--~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      +++++|+||||.+.+   +++|.++|+++++++|+||+|+...++... ......++  ..+++++++|+||.|+++|  
T Consensus       183 ~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G--  257 (402)
T PRK07505        183 AYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG--  257 (402)
T ss_pred             EEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC--
Confidence            999999999999999   777888899999999999999754443211 11112222  2346899999999999887  


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          261 FGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       261 vG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                       ||+++++       +++++.++...
T Consensus       258 -g~~~~~~-------~~~~~~~~~~~  275 (402)
T PRK07505        258 -GVIMLGD-------AEQIELILRYA  275 (402)
T ss_pred             -eEEEeCC-------HHHHHHHHHhC
Confidence             8886544       24777776654

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.76  E-value=1.5e-16  Score=146.86  Aligned_cols=210  Identities=20%  Similarity=0.221  Sum_probs=146.6

Q ss_pred             eeeccCCCCCCCCC-CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           44 VVPLGYGDPTAFPC-FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        44 ~i~l~~g~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      +..|+.|.|..... ...+..-.+++.+.+..... .+++  ...+|++++++++.        .+++++++|+++++..
T Consensus        25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~-~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~   93 (438)
T PRK15407         25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWL-TTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANLL   93 (438)
T ss_pred             cccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcc-cCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHH
Confidence            34478888753111 11122223444444443222 2333  35789999999982        3479999999999999


Q ss_pred             HHHHh---------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc
Q 022213          123 ILSVL---------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC  193 (301)
Q Consensus       123 ~~~~l---------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  193 (301)
                      ++.++         +++||+|+++.++|..+...+...|.++++++++. ..+.+|++.+++.+++++++|+++++   +
T Consensus        94 aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~  169 (438)
T PRK15407         94 AFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---L  169 (438)
T ss_pred             HHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---C
Confidence            99876         37899999999999999888999999999999864 35679999999999888999888774   4


Q ss_pred             ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCC
Q 022213          194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPN  270 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~  270 (301)
                      |...+   +++|.++|+++|+++|+|++++... +.+.   .+..++.    +.++||+  |.+.. |- -|+++..++ 
T Consensus       170 G~p~d---l~~I~~la~~~gi~vIeDaa~a~G~~~~g~---~~G~~gd----~~~fSf~~~k~~~~-ge-GG~l~t~d~-  236 (438)
T PRK15407        170 GNPFD---LAAVKAFCDKHNLWLIEDNCDALGSTYDGR---MTGTFGD----IATLSFYPAHHITM-GE-GGAVFTNDP-  236 (438)
T ss_pred             CChhh---HHHHHHHHHHCCCEEEEECccchhhhcCCe---eeeccCc----eEEEeCCCCCCccc-cC-ceEEEECCH-
Confidence            54444   8899999999999999999998643 2222   2333332    5555665  55432 33 488888553 


Q ss_pred             CcccchhHHHHHHhhhc
Q 022213          271 GIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       271 ~~~~~~~~~~~~~~~~~  287 (301)
                            ++.++++.+.+
T Consensus       237 ------~l~~~~~~~~~  247 (438)
T PRK15407        237 ------LLKKIIESFRD  247 (438)
T ss_pred             ------HHHHHHHHHHH
Confidence                  46666665544

>PLN02509 cystathionine beta-lyase

Probab=99.76  E-value=6.5e-17  Score=149.42  Aligned_cols=166  Identities=22%  Similarity=0.284  Sum_probs=124.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCc
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQV  153 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~  153 (301)
                      ..|... |.+ .++++.+++.+..    ..++++++++++.++..++ .++++||+|+++.+.|.++.    ..+...|+
T Consensus       125 ~~Y~r~-gnp-t~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~  197 (464)
T PLN02509        125 YDYTRS-GNP-TRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV  197 (464)
T ss_pred             CccCCC-CCH-HHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCe
Confidence            357654 544 5666777666532    3567788888899997665 57899999999999999875    33456788


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~  233 (301)
                      ++.+++.       .|++++++.+++++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|......    .
T Consensus       198 ~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~~~----~  263 (464)
T PLN02509        198 VVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMSPVLS----R  263 (464)
T ss_pred             EEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCccccccC----C
Confidence            8887753       4689999999888999999999999999765   999999999999999999998754432    1


Q ss_pred             CccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      ++. +..   .++++|++|.++.+| .-.|.+++.+
T Consensus       264 pl~-~ga---Divv~S~tK~l~G~gdv~gG~v~~~~  295 (464)
T PLN02509        264 PLE-LGA---DIVMHSATKFIAGHSDVMAGVLAVKG  295 (464)
T ss_pred             hhh-cCC---cEEEecCcccccCCCccceeEEEecc
Confidence            121 122   288999999987754 4457776543

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.75  E-value=1.8e-16  Score=144.12  Aligned_cols=199  Identities=24%  Similarity=0.279  Sum_probs=149.3

Q ss_pred             CChHHHHHHHHHHHhcCCC----CCCCCC----CCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHh--
Q 022213           59 RTAVEAEDAIVDAVRSGKF----NCYATN----SGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVL--  127 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~----~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l--  127 (301)
                      ++|+.+.+++.+.+.....    ..+...    .-+.+.|+.+++++      ++++ ++|++++|++++++.++.++  
T Consensus        10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l------g~~~~~~v~~~~~~t~a~~~~~~~l~~   83 (371)
T PF00266_consen   10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL------GAPPDEEVVFTSNGTEALNAVASSLLN   83 (371)
T ss_dssp             B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH------TSSTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc------CCccccccccccccchhhhhhhhcccc
Confidence            5678899999888763211    011111    11347788888888      4566 78999999999999999999  


Q ss_pred             -cCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          128 -ARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       128 -~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                       .++||+|++..-.|++..    ...+..|+++..++....  ..+|++.+++.++++++++++++.+|.||..++   +
T Consensus        84 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~--~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i  158 (371)
T PF00266_consen   84 PLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG--GSLDLEDLEEALNPDTRLVSISHVENSTGVRNP---I  158 (371)
T ss_dssp             HGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT--SSCSHHHHHHHHHTTESEEEEESBETTTTBBSS---H
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccc--chhhhhhhhhhhccccceEEeecccccccEEee---e
Confidence             789999999999998654    444578999999987543  348999999999999999999999999999999   8


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI  282 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~  282 (301)
                      ++|.++|+++|+++++|.+++...    .+..+..++-+   ++++|..|.+|.+|  +|++++++        +.++++
T Consensus       159 ~~I~~~~~~~~~~~~vD~~~~~g~----~~id~~~~~~D---~~~~s~~Kl~gp~G--~g~l~v~~--------~~~~~~  221 (371)
T PF00266_consen  159 EEIAKLAHEYGALLVVDAAQSAGC----VPIDLDELGAD---FLVFSSHKLGGPPG--LGFLYVRP--------EAIERL  221 (371)
T ss_dssp             HHHHHHHHHTTSEEEEE-TTTTTT----SS--TTTTTES---EEEEESTSTTSSST--EEEEEEEH--------HHHHHH
T ss_pred             ceehhhhhccCCceeEechhcccc----ccccccccccc---eeeecccccCCCCc--hhhheehh--------hhhhcc
Confidence            899999999999999999998633    23334433333   89999999444345  78888854        466666


Q ss_pred             Hhh
Q 022213          283 KDC  285 (301)
Q Consensus       283 ~~~  285 (301)
                      +..
T Consensus       222 ~p~  224 (371)
T PF00266_consen  222 RPA  224 (371)
T ss_dssp             HTS
T ss_pred             ccc
Confidence            443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.74  E-value=3.2e-16  Score=143.64  Aligned_cols=214  Identities=13%  Similarity=0.108  Sum_probs=152.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +.+++|+..+.   -.+...+.++++..+++++....      -++...-+.+|++++|+|+        ..+..++.++
T Consensus       102 r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--------g~e~all~sS  170 (476)
T PLN02955        102 KKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--------KKEDCLVCPT  170 (476)
T ss_pred             ceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--------CCCcEEEECC
Confidence            47899999885   35777788999988888742111      1111112467888999988        4678899999


Q ss_pred             HHHHHHHHHHHhc--------------CCCCEEEEcCCCCcchHHHHHhc----CceEEEeecCCCCCCCCCHHHHHhhc
Q 022213          116 CKQAVEVILSVLA--------------RPGANVLLPRPGWPYYEGIAQRK----QVEVRHFDLLPERNWEVDLDAVEALA  177 (301)
Q Consensus       116 ~~~al~~~~~~l~--------------~~gd~Vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~~  177 (301)
                      +..|...++.++.              .++|.|+...-.|.+....++..    +.++..++.       .|++.|++.+
T Consensus       171 Gy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L  243 (476)
T PLN02955        171 GFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLL  243 (476)
T ss_pred             hHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHH
Confidence            9999888888872              45677888888888877777655    456655543       5788888877


Q ss_pred             cc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCccc
Q 022213          178 DK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKR  253 (301)
Q Consensus       178 ~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~  253 (301)
                      +.   +.+.|++....++.|.+.+   +++|.++|++||+++|+||+|+.+.++...-.....++. .+..|+++||||+
T Consensus       244 ~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA  320 (476)
T PLN02955        244 SSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKA  320 (476)
T ss_pred             HhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccc
Confidence            43   3344555555889999999   888888888999999999999988876422222222221 2346999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +|+.|   ||++++.        ++++.++....
T Consensus       321 ~G~~G---Gfi~gs~--------~~~~~l~~~~~  343 (476)
T PLN02955        321 AGCHG---GFIACSK--------KWKQLIQSRGR  343 (476)
T ss_pred             hhccC---ceeecHH--------HHHHHHHHhCC
Confidence            88777   9998754        47777776543

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.74  E-value=2e-16  Score=145.55  Aligned_cols=158  Identities=20%  Similarity=0.179  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~  160 (301)
                      ....|++.++++.        ..+..+++++++.|+..++.+++++||+|+++...|.+....    +...|+++++++ 
T Consensus        70 ~~~~Le~~lA~l~--------g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  140 (436)
T PRK07812         70 TQDVVEQRIAALE--------GGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-  140 (436)
T ss_pred             hHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence            3567888888887        335678888999999999999999999999999888765433    345788877774 


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                      +.     .|++.+++++++++++|++.+|+||+|.+.+   +++|+++|+++|+++|+|+++..-..    ..++ .++.
T Consensus       141 d~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~~pl-~~Ga  207 (436)
T PRK07812        141 DP-----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----IRPL-EHGA  207 (436)
T ss_pred             CC-----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcCC
Confidence            11     3889999999888999999999999999999   88888999999999999999875221    1222 1222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +   +++.|++|.++..|--+|++++.
T Consensus       208 D---ivv~S~tK~lgg~G~~i~G~vv~  231 (436)
T PRK07812        208 D---IVVHSATKYLGGHGTAIAGVIVD  231 (436)
T ss_pred             C---EEEEecccccCCCCCeEEEEEEc
Confidence            2   77899999999898888888774

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.73  E-value=3.2e-16  Score=141.97  Aligned_cols=193  Identities=23%  Similarity=0.337  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~  140 (301)
                      ++..+++.+.++++.+..+++  -..+|++++++|+        ..++++.++++|.||.+++.++- ++||+|+++..+
T Consensus         5 ~e~~~~v~~~l~s~~~~~~g~--~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t   74 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLSTYGP--YVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYT   74 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSSSSH--HHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS
T ss_pred             HHHHHHHHHHHHhCCccCCCH--HHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCc
Confidence            455677888888765444333  4689999999999        46799999999999999999984 799999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |......+...|.+++++++++ .++.+|++.+++.+++++++|+++|.   -|...+   +.+|.++|+++|+++|+|.
T Consensus        75 ~~~~~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~~i~lIeD~  147 (363)
T PF01041_consen   75 FPATASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIRAIARKHGIPLIEDA  147 (363)
T ss_dssp             -THHHHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-
T ss_pred             chHHHHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCccEEEEecC---CCCccc---HHHHHHHHHHcCCcEEEcc
Confidence            9999999999999999999975 46789999999999999999987664   455555   8899999999999999999


Q ss_pred             CCccccc-CCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          221 VYGHLTF-GSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       221 ~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +++.... .+   ..++.++.    +.++||  +|.+  +.-.-|.++..+       +++.++++.+.+
T Consensus       148 a~a~g~~~~g---~~~G~~gd----~~~fSf~~~K~i--~~geGG~v~~~~-------~~~~~~~~~~~~  201 (363)
T PF01041_consen  148 AQAFGARYKG---RPVGSFGD----IAIFSFHPTKII--TTGEGGAVVTND-------PELAERARALRN  201 (363)
T ss_dssp             TTTTT-EETT---EETTSSSS----EEEEESSTTSSS---SSS-EEEEEST-------HHHHHHHHHHTB
T ss_pred             ccccCceeCC---EeccCCCC----ceEecCCCCCCC--cCCCCeeEEecH-------HHHHHHhhhhhc
Confidence            9997542 22   22333332    667777  5775  333348888755       357888887665

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=6.5e-16  Score=137.57  Aligned_cols=192  Identities=21%  Similarity=0.283  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      ..-.+++.+.++++.+.. ++  -..+|.+++++|+        ...+.+.++++|.|+.+++++| ..|||.|+++.-+
T Consensus        15 ~~e~~~v~~vl~sg~i~~-G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~T   83 (374)
T COG0399          15 EEELAAVQEVLKSGWLTG-GP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFT   83 (374)
T ss_pred             hHHHHHHHHHHHcCCeec-Ch--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCc
Confidence            566788888888776543 33  4689999999998        5679999999999999999977 4899999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |....+.+...|++++++|++++ .+.+|++.+++++.+++|+|+..|   --|...+   +++|.++|++||++||+|.
T Consensus        84 fvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVh---l~G~~~d---m~~i~~la~~~~l~vIEDa  156 (374)
T COG0399          84 FVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVH---LAGQPCD---MDAIMALAKRHGLPVIEDA  156 (374)
T ss_pred             hHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEeh---hccCCCC---HHHHHHHHHHcCCeEEEEc
Confidence            99999999999999999999764 567999999999999999998555   3455566   8888888889999999999


Q ss_pred             CCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          221 VYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       221 ~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +++.-. |.++.   ++.++.    +.++||  +|.+...  --|.++..+       +++.++++.++.
T Consensus       157 Aqa~Ga~y~gk~---vGt~Gd----~~~fSF~~~K~ittg--EGGav~tnd-------~ela~k~~~lr~  210 (374)
T COG0399         157 AQAHGATYKGKK---VGSFGD----IGAFSFHATKNLTTG--EGGAVVTND-------EELAEKARSLRN  210 (374)
T ss_pred             chhccCeecCcc---cccccc----eEEEEecCCCCcccc--CceEEEeCC-------HHHHHHHHHHHH
Confidence            998643 33432   333332    444454  6775433  457777644       467788877654

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.72  E-value=4.2e-16  Score=143.13  Aligned_cols=241  Identities=13%  Similarity=0.052  Sum_probs=148.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+++|..|.-.. ..-..++.+.+++.++++....   .......+..+.+.+.+.+..    ..+.++++++++
T Consensus        27 d~dg~~~lD~~~~~~~~-~~Gh~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SGs   98 (400)
T PTZ00125         27 DVEGKKYYDFLSAYSAV-NQGHCHPKILAALINQAQKLTL---TSRAFYNDVLGLAEKYITDLF----GYDKVLPMNSGA   98 (400)
T ss_pred             eCCCCEEEEcccCHhhc-cCCcCCHHHHHHHHHHHHhccc---ccccccCHHHHHHHHHHHhCC----CCCEEEEeCCcH
Confidence            34678899998773221 1112467889999988763221   111111234445555554422    236899999999


Q ss_pred             HHHHHHHHHhcC----------CCCEEEEcCCCCcchHHHHHhc-CceEE---EeecCCC--CCCCCCHHHHHhhcc-cC
Q 022213          118 QAVEVILSVLAR----------PGANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPE--RNWEVDLDAVEALAD-KN  180 (301)
Q Consensus       118 ~al~~~~~~l~~----------~gd~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~--~~~~~~~~~l~~~~~-~~  180 (301)
                      +|.+.+++.+..          .+++|+..+-+|++........ +....   +.+..+.  .-.-.|++.+++.++ .+
T Consensus        99 ~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  178 (400)
T PTZ00125         99 EAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPN  178 (400)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCC
Confidence            999999997741          3478888888888753332222 21110   0010000  000138899999886 56


Q ss_pred             ccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          181 TAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      ++++++..++||||.+++ .+.+++|.++|++||+++|+||+|..+.+.+..+ .........+++   ++||.++.+++
T Consensus       179 ~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~~~~~~~~pd~~---~~sK~l~~g~~  254 (400)
T PTZ00125        179 VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-AHDHEGVKPDIV---LLGKALSGGLY  254 (400)
T ss_pred             eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-HHHhcCCCCCEE---EEcccccCCCc
Confidence            778888788999999986 4569999999999999999999998766554321 111122122333   47899876556


Q ss_pred             eeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          260 RFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       260 rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      |+||+++++        ++++.+..... ...+.+++.|.
T Consensus       255 ~ig~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~  286 (400)
T PTZ00125        255 PISAVLAND--------DVMLVIKPGEHGSTYGGNPLACA  286 (400)
T ss_pred             CcEEEEEcH--------HHHhhccCCCCCCCCCcCHHHHH
Confidence            999999854        46666654322 22234555554

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.72  E-value=6.2e-16  Score=140.52  Aligned_cols=199  Identities=16%  Similarity=0.047  Sum_probs=129.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-------CCCCCCC------CCCCHHHHHHHHHHHhhhCCCCCCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-------KFNCYAT------NSGIPPARRAIADYLSRDLPYKLSA  107 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-------~~~~Y~~------~~g~~~lr~~ia~~l~~~~~~~~~~  107 (301)
                      .+.+++|+..+.   -++...+.+.+++.+++..-       ..+..+.      ..-+.++|+.+|+++.      .+ 
T Consensus         3 ~~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~~-   72 (370)
T PRK05937          3 ESLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------AP-   72 (370)
T ss_pred             CCceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-
Confidence            467899999984   35667777777777776532       1111222      1125678888888872      22 


Q ss_pred             CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------Cc
Q 022213          108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NT  181 (301)
Q Consensus       108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~  181 (301)
                      +.+++++| +.++..++..+.++||.|++..-.|......++......+.++       ..|++.+++.++.      ++
T Consensus        73 ~~l~~~sG-~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~  144 (370)
T PRK05937         73 EAFIVPSG-YMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGR  144 (370)
T ss_pred             eEEEECCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCc
Confidence            23555555 5666666666667888888888888776666655432222232       1588888888762      34


Q ss_pred             cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      +++++++++|++|.+.+   +++|.++|+++|+++++|++|+...++.........+.-....+.+.||||.+|..|.+
T Consensus       145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~  220 (370)
T PRK05937        145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAA  220 (370)
T ss_pred             EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceE
Confidence            46678899999999999   88888889999999999999996444321100001111111236788999999887743

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.71  E-value=3.7e-16  Score=144.41  Aligned_cols=245  Identities=12%  Similarity=0.062  Sum_probs=150.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++++..|..... .-..++.+.+++.+++..... .+....+.. ...++++++....+.+. .++++++++++
T Consensus        37 d~dG~~~lD~~~g~~~~~-lGh~~~~i~~a~~~~~~~~~~-~~~~~~~~~-~~~~la~~l~~~~~~~~-~~~~~f~~sGs  112 (425)
T PRK08088         37 DVEGREYLDFAGGIAVLN-TGHLHPKVVAAVEAQLKKLSH-TCFQVLAYE-PYLELCEKMNQKVPGDF-AKKTLLVTTGS  112 (425)
T ss_pred             eCCCCEEEEcCCchhhcC-CCCCCHHHHHHHHHHHhhCCC-ccccccCCH-HHHHHHHHHHHhCCCCC-CCEEEEeCCcH
Confidence            456888999988754321 122467888999988874332 122211223 44578888876444222 24778888888


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEE--------------EeecCC-CCCCCC--CHHHHHhhcc
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVR--------------HFDLLP-ERNWEV--DLDAVEALAD  178 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~--------------~~~~~~-~~~~~~--~~~~l~~~~~  178 (301)
                      +|++.+++....  ...+|+...++|++....+...+....              .++... ..+...  +++.+++.++
T Consensus       113 ea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~  192 (425)
T PRK08088        113 EAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFK  192 (425)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHH
Confidence            988888876642  234667669999987555444332111              011100 011101  1455777664


Q ss_pred             ----cCccEEEEcCC--CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcc
Q 022213          179 ----KNTAAMVIINP--GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISK  252 (301)
Q Consensus       179 ----~~~~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK  252 (301)
                          .+..+.++..|  +++.....+.+.+++|.++|++|++++|+||+|..+.+.+. ..++...+   .+.-+.||||
T Consensus       193 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~---~~pdi~s~sK  268 (425)
T PRK08088        193 NDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMG---VAADLTTFAK  268 (425)
T ss_pred             hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcC---CCCCEEEEec
Confidence                12234455555  67777788999999999999999999999999998655442 22222222   2244689999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      .++ +|+|+||++++.        ++++.+..... ...+.+++.|.+
T Consensus       269 ~l~-~G~rig~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a  307 (425)
T PRK08088        269 SIA-GGFPLAGVTGRA--------EVMDAIAPGGLGGTYAGNPIACAA  307 (425)
T ss_pred             ccc-CCCcceeeEecH--------HHHhhcCCCCCCCCCCcCHHHHHH
Confidence            976 999999999853        46666654432 233556676654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.71  E-value=8.2e-16  Score=139.99  Aligned_cols=238  Identities=12%  Similarity=0.087  Sum_probs=153.3

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~  116 (301)
                      ..+++.+|++..|.-..  .++..+.+.+++.++++...  .+.. ....++++++++.+..      .++ .+++++++
T Consensus        25 d~dg~~~lD~~s~~~~~--~lG~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SG   93 (375)
T PRK04260         25 DTDGKKYLDFSSGIGVT--NLGFHPQVQQALQKQAGLIW--HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSG   93 (375)
T ss_pred             eCCCCEEEECCCCcccc--cCCCCHHHHHHHHHHHHhcC--cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCcc
Confidence            34578899998773211  24446779999999886421  2322 3456789999987732      223 46899999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcchH-HHHHhcCceEE--Ee--ecCCCC-CCCCCHHHHHhhcccCccEEEEcC
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPYYE-GIAQRKQVEVR--HF--DLLPER-NWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~--~~--~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      ++++..+++...  ..+++|++.+.+|++.. ......+.+..  ..  ...... ..-.|++.+++.++++..++++..
T Consensus        94 seA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~  173 (375)
T PRK04260         94 AEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLEL  173 (375)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECC
Confidence            999999988774  34678999888888642 22222221110  00  000000 001478999988876777888888


Q ss_pred             CCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ++|++|...+ .+.++++.++|+++|+++|+||+|..+...+. ..+...++...++   .||||.++ +|+|+||++++
T Consensus       174 v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~~~pdi---~t~sK~l~-~G~~ig~~~~~  248 (375)
T PRK04260        174 VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYGIEPDI---FTLAKGLA-NGVPVGAMLAK  248 (375)
T ss_pred             eECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhCCCCCE---EEeccccc-CCcceEEEEEc
Confidence            9999998754 57899999999999999999999987655443 2222222222333   38999965 79999999985


Q ss_pred             CCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +        ++.+.+..... ...+.+++.|.+
T Consensus       249 ~--------~~~~~~~~~~~~~t~~~~~~~~~a  273 (375)
T PRK04260        249 S--------SLGGAFGYGSHGSTFGGNKLSMAA  273 (375)
T ss_pred             H--------HHHhhcCCCCCCCCCCcCHHHHHH
Confidence            4        35555543222 122345555543

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.70  E-value=1.1e-15  Score=138.48  Aligned_cols=155  Identities=15%  Similarity=0.179  Sum_probs=124.1

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  161 (301)
                      ...|.+.+|++-        ..+..+++++++.|+..++.+++++||+|+++...|.+...+    ++..|+++.+++. 
T Consensus        64 ~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-  134 (395)
T PRK08114         64 HFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-  134 (395)
T ss_pred             HHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-
Confidence            456777777764        356889999999999999999999999999999999776544    4668999988864 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                            .|.+.+++++++++++|++.+|.||+|.+.+   +++|+++|+++  |+++++|++++.-..    +.+ ..++
T Consensus       135 ------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~----~~p-l~~G  200 (395)
T PRK08114        135 ------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL----FKA-LDFG  200 (395)
T ss_pred             ------CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc----cCH-HHcC
Confidence                  4678999999989999999999999999999   99999999998  499999999986322    111 1223


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEe
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVT  266 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~  266 (301)
                      -+   |++.|.+|.++.++ ...|.++.
T Consensus       201 aD---ivv~S~tKyl~Ghsdv~~G~v~~  225 (395)
T PRK08114        201 ID---ISIQAGTKYLVGHSDAMIGTAVA  225 (395)
T ss_pred             Cc---EEEEcCcccccCCCcceeEEEEc
Confidence            33   99999999877765 66775554

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.70  E-value=1.3e-15  Score=139.62  Aligned_cols=219  Identities=16%  Similarity=0.146  Sum_probs=140.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-..+-.. .++.+.+++.++++...  ..+. ....+...++++.+.+..    ..+.++++++++
T Consensus        31 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~L~~~~----~~~~~~f~~SGs  102 (397)
T TIGR03246        31 DQQGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLW--HIGN-GYTNEPVLRLAKKLVDAT----FADKVFFCNSGA  102 (397)
T ss_pred             eCCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcc--cccC-ccCCHHHHHHHHHHHhhC----CCCEEEEeCCcH
Confidence            446889999988722111123 46788899998887421  1111 112344455555554422    246999999999


Q ss_pred             HHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHH-HhcCce------------EEEeecCCCCCCCCCHHHHHhh
Q 022213          118 QAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIA-QRKQVE------------VRHFDLLPERNWEVDLDAVEAL  176 (301)
Q Consensus       118 ~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~-~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~  176 (301)
                      +|.+.+++....       + .++|+..+-+|++..... ...+..            +..++.       .|++.+++.
T Consensus       103 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~  175 (397)
T TIGR03246       103 EANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKAL  175 (397)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHH
Confidence            999999997731       2 357888777887753322 222211            111111       478999998


Q ss_pred             cccCccEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213          177 ADKNTAAMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL  255 (301)
Q Consensus       177 ~~~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~  255 (301)
                      +.+++.++++..++++.|... +.+.+++|.++|++||+++|+||+|..+...+..+ ....++-..+++   ++||.++
T Consensus       176 l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~pDi~---t~~K~lg  251 (397)
T TIGR03246       176 ISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDIL---TSAKALG  251 (397)
T ss_pred             hccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCCCCEE---Eeehhhh
Confidence            876666666664455556543 88999999999999999999999998775544322 222233222333   8899976


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                       .|+++||++++.        ++++.++.
T Consensus       252 -gG~pigav~~~~--------~i~~~~~~  271 (397)
T TIGR03246       252 -GGFPIGAMLTTT--------EIAAHLKV  271 (397)
T ss_pred             -CCcceeEEEEcH--------HHHHhccC
Confidence             799999999843        46666654

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.67  E-value=3e-15  Score=137.89  Aligned_cols=157  Identities=19%  Similarity=0.234  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~  161 (301)
                      ...+++.+++++        ..+..+++++++.|+.+++.+++++||+|+++...|.+..    ..+...|+++.+++ +
T Consensus        71 ~~~le~~la~l~--------g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~  141 (437)
T PRK05613         71 VEALENRIASLE--------GGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N  141 (437)
T ss_pred             HHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence            467788888886        2245666666669999999998999999999999998763    44577899999887 2


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      +     .|++.+++++++++++|++.++.||+|.+.+   +++|+++|+++|+++|+|.+++....    ..++ .++-+
T Consensus       142 ~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~----~~p~-~~GaD  208 (437)
T PRK05613        142 P-----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL----VRPL-ELGAD  208 (437)
T ss_pred             C-----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc----cChH-HhCCC
Confidence            2     2789999999988999988999999999999   88889999999999999999865322    1122 12222


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEee
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                         +++.|++|.++.+|-.+|-+++.
T Consensus       209 ---ivv~S~~K~l~G~gd~~gG~vv~  231 (437)
T PRK05613        209 ---VVVASLTKFYTGNGSGLGGVLID  231 (437)
T ss_pred             ---EEEeeccceecCCCcceeEEEEe
Confidence               88999999988877777776663

>TIGR01814 kynureninase kynureninase

Probab=99.67  E-value=7.6e-15  Score=135.02  Aligned_cols=193  Identities=13%  Similarity=0.121  Sum_probs=132.6

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC----CCCCCCCCC---CHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK----FNCYATNSG---IPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~g---~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +.++.|+++.-.     +.|..+.+++.+.++...    ...+....+   ..+.++++ +++      +.++++|++|+
T Consensus        26 ~~~iyld~~a~g-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------g~~~~~v~~~~   93 (406)
T TIGR01814        26 NAVIYLDGNSLG-----LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLV------GAKEDEVVVMN   93 (406)
T ss_pred             CCcEEecCCCcC-----cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-ccc------CCCCCcEEEeC
Confidence            568999977632     336778888876654211    111110011   12222333 343      46788999999


Q ss_pred             CHHHHHHHHHHHhcCCC---CEEEEcCCCCcchH----HHHHhcCceE----EEeecCCCCCCCCCHHHHHhhcc---cC
Q 022213          115 GCKQAVEVILSVLARPG---ANVLLPRPGWPYYE----GIAQRKQVEV----RHFDLLPERNWEVDLDAVEALAD---KN  180 (301)
Q Consensus       115 g~~~al~~~~~~l~~~g---d~Vl~~~p~~~~~~----~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~~---~~  180 (301)
                      |+|++++.++.++.++|   +.|++....|++..    ..++..|+++    +.++.  ..++.++++.+++.++   ++
T Consensus        94 ~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~~~l~~~~~~~~~~  171 (406)
T TIGR01814        94 TLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRLEDILDTIEKNGDD  171 (406)
T ss_pred             CchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCHHHHHHHHHhcCCC
Confidence            99999999999987664   36888888998632    2345668776    34443  3344578888888763   57


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCc
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPG  258 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G  258 (301)
                      ++++++++++|.||..++   +++|+++|+++|+++++|++++.    +..+..+..++-+   +++.|.+|+++ .||
T Consensus       172 t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~gvD---~~~~s~hK~l~g~pG  240 (406)
T TIGR01814       172 IAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLHDWGVD---FACWCTYKYLNAGPG  240 (406)
T ss_pred             eEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccccCCCC---EEEEcCccccCCCCC
Confidence            889999999999999999   89999999999999999999987    3233333333322   88999999864 455

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.67  E-value=4.6e-15  Score=134.23  Aligned_cols=169  Identities=24%  Similarity=0.297  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~  161 (301)
                      ...|++.++++.        ..+.++++++++.|+..++.+++++||+|+++...|.+...+++    ..|+++.+++. 
T Consensus        57 ~~~le~~la~Le--------~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-  127 (386)
T PF01053_consen   57 VRALEQRLAALE--------GGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP-  127 (386)
T ss_dssp             HHHHHHHHHHHH--------T-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-
T ss_pred             HHHHHHHHHHhh--------cccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-
Confidence            346777777776        34789999999999999999999999999999999997765554    47999988864 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CeEEEccCCcccccCCCCCCCccccCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR-VMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~-~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                            -|++++++++++++++|++..|.||+..+.+   +++|+++|+++| +++|+|+.+......    .++. ++-
T Consensus       128 ------~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~----~pL~-~Ga  193 (386)
T PF01053_consen  128 ------TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ----NPLE-LGA  193 (386)
T ss_dssp             ------TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-----GGG-GT-
T ss_pred             ------hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee----ccCc-CCc
Confidence                  5889999999999999999999999988888   999999999998 999999999864321    2222 222


Q ss_pred             CCCEEEEecCcccCCCCcce-eEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          241 IVPVITLGSISKRWLVPGWR-FGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~r-vG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +   |++.|.+|.++..|-- .|.+++++.      +++..+++...
T Consensus       194 D---ivv~S~TKyl~Ghsdv~~G~vv~~~~------~~~~~~l~~~~  231 (386)
T PF01053_consen  194 D---IVVHSATKYLSGHSDVMGGAVVVNGS------SELYDRLREFR  231 (386)
T ss_dssp             S---EEEEETTTTTTTSSSE-EEEEEESSH------HHHHHHHHHHH
T ss_pred             e---EEEeeccccccCCcceeeEEEEECch------hhhhhhhcchh
Confidence            2   9999999998765544 455554331      24666665543

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.67  E-value=1.2e-15  Score=141.00  Aligned_cols=225  Identities=15%  Similarity=0.100  Sum_probs=142.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ++..++..++||..|.+...- -..++.+.+++.++++... ..|.+..+..+|.+.+++.+    .   ..+.++++++
T Consensus        44 l~d~dG~~~lD~~~g~~~~~l-Gh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~s  114 (426)
T PRK00062         44 LYDVDGNEYIDYVGSWGPMIL-GHAHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELV----P---SIEMVRMVNS  114 (426)
T ss_pred             EEeCCCCEEEEcccchhhhhc-CCCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecC
Confidence            334568899999988654321 1356788999999987633 23333333445555555543    1   3468999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCCCCHHHHHhhccc-
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWEVDLDAVEALADK-  179 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~-  179 (301)
                      +++|++.+++....  .+++|+..+++|+++...+... +..            ...+..........|++.+++.+.. 
T Consensus       115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  194 (426)
T PRK00062        115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEY  194 (426)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhC
Confidence            99999999998654  3588999999999875322221 100            0000000000001368888887743 


Q ss_pred             --CccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          180 --NTAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       180 --~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                        ++.++++......+|.+.+ .+.+++|.++|++||+++|+||+|..+.+++ .. ....++-..+   +.++||.++ 
T Consensus       195 ~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~-~~-~~~~~~~~pD---i~~~gK~l~-  268 (426)
T PRK00062        195 GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL-GG-AQGYYGVTPD---LTTLGKIIG-  268 (426)
T ss_pred             CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC-cc-HHHHhCCCcc---hHhhhhHhh-
Confidence              3445555433444788776 7889999999999999999999999874432 11 1112222222   358899986 


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      .|+++|+++++.        ++++.++
T Consensus       269 ~G~p~ga~~~~~--------~i~~~~~  287 (426)
T PRK00062        269 GGLPVGAFGGRR--------EIMEQLA  287 (426)
T ss_pred             CCCcceeeeEHH--------HHHHhhc
Confidence            789999998743        4777775

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.65  E-value=7.9e-15  Score=134.50  Aligned_cols=244  Identities=12%  Similarity=0.043  Sum_probs=153.5

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-... --..++.+.+++.++++...  .+.. ....+...++++.+....+   ..+.++++++
T Consensus        34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~L~~~~~---~~~~v~f~~s  106 (408)
T PRK04612         34 VWDDQGREYLDLAAGIAVCG-LGHNDPDLVAALTEQAGKLW--HTSN-VFYSAPPLKLAEELVTASR---FAEKVFLCNS  106 (408)
T ss_pred             EEECCCCEEEEcCccHhhcc-CCCCCHHHHHHHHHHHHhcc--cccc-ccCCHHHHHHHHHHHhhCC---CCCEEEEcCc
Confidence            33456889999987732111 12245788899998887422  2222 1223455567777654221   1268999999


Q ss_pred             HHHHHHHHHHHhcC----C-----CCEEEEcCCCCcchHHHHHhc-CceEE---EeecCCC--CCCCCCHHHHHhhcccC
Q 022213          116 CKQAVEVILSVLAR----P-----GANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPE--RNWEVDLDAVEALADKN  180 (301)
Q Consensus       116 ~~~al~~~~~~l~~----~-----gd~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~--~~~~~~~~~l~~~~~~~  180 (301)
                      +++|.+.+++....    .     ..+|+....+|++........ +....   +-+..+.  .-.-.|++.+++.++.+
T Consensus       107 GseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~  186 (408)
T PRK04612        107 GTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGG  186 (408)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCC
Confidence            99999999986642    1     246888888898764333222 21100   0011000  00013788898888766


Q ss_pred             ccEEEEcCCCCCcccCCC--HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINPGNPCGNVFT--YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~--~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..++++..|.+++|.+++  .+.+++|.++|++||+++|+||+|..+.+.+..+ ..   ...+....+.+|||.++ +|
T Consensus       187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-a~---~~~~~~pdi~t~~K~l~-~G  261 (408)
T PRK04612        187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF-AH---WQEQVTPDIVTLAKALG-GG  261 (408)
T ss_pred             CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh-hh---hhcCCCCCEEEEcchhc-CC
Confidence            778888999888887666  5789999999999999999999999876654321 11   11122456679999976 89


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +|+||+++++        ++++.+..... ...+.+++.+.+
T Consensus       262 ~piga~~~~~--------~~~~~~~~~~~~~t~~~~p~~~aa  295 (408)
T PRK04612        262 FPIGAMLAGP--------KVAETMQFGAHGTTFGGNPLAAAV  295 (408)
T ss_pred             CceEEEEECH--------HHHhhhcCCCcCCCCCCCHHHHHH
Confidence            9999998753        35555544322 222345555543

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.65  E-value=2.2e-14  Score=132.89  Aligned_cols=244  Identities=13%  Similarity=0.066  Sum_probs=147.6

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|--... --..++.+.+++.+++....  .+.......+.+.++|+.+....+  ...+.++++++
T Consensus        35 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~s  109 (443)
T PRK08360         35 VWDIEGNEYIDFLSDAAVQN-VGHNNPRVVKAIKEQTDKLI--HYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLS  109 (443)
T ss_pred             EEECCCCEEEEccccHhhcc-cCCCCHHHHHHHHHHHHhcc--CccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCC
Confidence            33456889999988722111 12345788899999887432  222222224556667777655322  12258999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHH-HHhcCc------------eEEEeecCCCC--CCC--------CCH
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGI-AQRKQV------------EVRHFDLLPER--NWE--------VDL  170 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~-~~~~g~------------~~~~~~~~~~~--~~~--------~~~  170 (301)
                      +++|++.+++....  ...+|+...-+|++.... ....+.            .+.+++.....  .+.        .++
T Consensus       110 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (443)
T PRK08360        110 GSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV  189 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence            99999999987642  336788888888875322 121121            12222221100  000        123


Q ss_pred             HHHHhhcc-----cCccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          171 DAVEALAD-----KNTAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       171 ~~l~~~~~-----~~~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +.+++.+.     +++.++++ .| +||+|.+++ .+.+++|.++|++||+++|+||+|..+.+.+.. .....++-..+
T Consensus       190 ~~~~~~l~~~~~~~~iAAvi~-eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~-~a~~~~~~~pD  267 (443)
T PRK08360        190 EYIKEKFEGEVYAEGVAALFA-EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKW-FAIEHFGVEPD  267 (443)
T ss_pred             HHHHHHHHhccCCCCeEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccc-hhhhhcCCCCC
Confidence            34555553     23445554 46 699999887 557999999999999999999999987665542 22222333334


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      ++   ++||.++ +|+|+||++++.        ++++.+..... ...+.+++.|.
T Consensus       268 ii---tlsK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~p~~~a  311 (443)
T PRK08360        268 II---TLGKPLG-GGLPISATIGRA--------EIMDSLPPLAHAFTLSGNPVASA  311 (443)
T ss_pred             EE---Eeccccc-CCceeEEEEEcH--------HHHhhhcCCCCCCCCCcCHHHHH
Confidence            44   6799987 899999999843        46666654322 22234555543

>PLN00144 acetylornithine transaminase

Probab=99.65  E-value=4.8e-15  Score=135.02  Aligned_cols=239  Identities=13%  Similarity=0.081  Sum_probs=145.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|.-.. ..-..++.+.+++.+++....  .+.. ....+...++++.+.+..    ..+.++++++++
T Consensus        11 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~f~~sGs   82 (382)
T PLN00144         11 DVEGKEYLDMAAGIAVN-ALGHGDPDWVKAVAEQAGTLA--HVSN-VYHTIPQVELAKRLVASS----FADRVFFCNSGT   82 (382)
T ss_pred             eCCCCEEEECCcCHHhc-cCCCCCHHHHHHHHHHHHhcC--Cccc-cccCHHHHHHHHHHHhcC----CCCeEEEeCCcH
Confidence            34688899997773111 012245788899999887432  1221 122455566777765421    346899999999


Q ss_pred             HHHHHHHHHhcC----C-----------CCEEEEcCCCCcchHHHHHhcCceE----EEeecCCCCC--CCCCHHHHHhh
Q 022213          118 QAVEVILSVLAR----P-----------GANVLLPRPGWPYYEGIAQRKQVEV----RHFDLLPERN--WEVDLDAVEAL  176 (301)
Q Consensus       118 ~al~~~~~~l~~----~-----------gd~Vl~~~p~~~~~~~~~~~~g~~~----~~~~~~~~~~--~~~~~~~l~~~  176 (301)
                      +|.+.+++....    .           ..+|+...-+|++............    .+.+..+...  .-.|++.+++.
T Consensus        83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  162 (382)
T PLN00144         83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKL  162 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHh
Confidence            999999986631    0           2478888888987654333322111    0011111000  01368889888


Q ss_pred             cccCccEEEEcCC-CCCcccCCC--HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcc
Q 022213          177 ADKNTAAMVIINP-GNPCGNVFT--YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISK  252 (301)
Q Consensus       177 ~~~~~~~v~l~~p-~nptG~~~~--~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK  252 (301)
                      +.....+.++..| +|| |.+++  .+.+++|.++|++||+++|+||+|..+.+.+..+.. ...+.+  +   +.+|||
T Consensus       163 ~~~~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~P--D---i~t~sK  236 (382)
T PLN00144        163 IQKGKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEP--D---IMTLAK  236 (382)
T ss_pred             cCCCCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCC--C---EEEecc
Confidence            7543333444444 788 44444  455999999999999999999999988766542221 222333  3   568999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      .+ .+|+|+||++++.        ++++.+..... .....++++|.+
T Consensus       237 ~l-~~G~pig~v~~~~--------~~~~~~~~~~~~~T~~~~pl~~aa  275 (382)
T PLN00144        237 PL-AGGLPIGAVLVTE--------KVASAINPGDHGSTFAGGPLVCNA  275 (382)
T ss_pred             cc-cCCcceEEEEEcH--------HHHhccCCCCCCCCCCCCHHHHHH
Confidence            95 5899999999854        36666543221 223455555543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.65  E-value=1.1e-14  Score=133.33  Aligned_cols=186  Identities=15%  Similarity=0.190  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH-HHHHHHHHHhcC---CCCEEEEcCCCCcchHHHHHhcCceEEEeec-C
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCK-QAVEVILSVLAR---PGANVLLPRPGWPYYEGIAQRKQVEVRHFDL-L  161 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~-~al~~~~~~l~~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~  161 (301)
                      ..+.+.+.+.+.+..|.. +.+..++++|+| .++.+++.++..   +||.|+++.-+|.+....+...|+++++++. .
T Consensus       104 ~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~  182 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVL  182 (444)
T ss_pred             HHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeee
Confidence            444444444444444422 124688899999 688888887753   5899999999999999999999999999996 3


Q ss_pred             CCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          162 PERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                      .++++.+|++.+++++++   +.+++++.+|+  |+.....+++++|+++|++||+++|+|++|+.....-..... ...
T Consensus       183 d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~-~g~  259 (444)
T TIGR03531       183 DGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELIN-KAI  259 (444)
T ss_pred             cCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhh-ccc
Confidence            456788999999999975   34556666665  454445566999999999999999999999953211000000 011


Q ss_pred             CCCCC-EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          239 GSIVP-VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       239 ~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      . .++ .+++.|++|.+.+||.  |+++..++      +++.++++..
T Consensus       260 ~-~Grad~vv~s~hK~l~~pg~--Gg~I~~~d------~el~~~i~~~  298 (444)
T TIGR03531       260 K-VGRVDAVVSSTDKNFMVPVG--GAIIYSFD------ENFIQEISKS  298 (444)
T ss_pred             c-ccCCCeEEEeCccCCCCCCC--EEEEEECC------HHHHHHHHHh
Confidence            1 111 2667899999988876  66664332      3566777654

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.64  E-value=5.4e-14  Score=130.11  Aligned_cols=191  Identities=19%  Similarity=0.165  Sum_probs=132.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCC---CC--CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATN---SG--IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~---~g--~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~  133 (301)
                      +.++.+.+++.+.+.+.....|.-.   .|  +..+++.+++++        ..+..+++++++.|+.+++.++ .+||+
T Consensus        97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~--------Gae~a~vv~sgtaAl~l~l~~l-~~Gde  167 (464)
T PRK04311         97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT--------GAEDALVVNNNAAAVLLALNAL-AAGKE  167 (464)
T ss_pred             CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHh-CCCCE
Confidence            4668888999888764321122211   12  357788888887        3457888899999999988665 78999


Q ss_pred             EEEcCCCCcc------hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--c--cCCCHHHHH
Q 022213          134 VLLPRPGWPY------YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--G--NVFTYHHLQ  203 (301)
Q Consensus       134 Vl~~~p~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G--~~~~~~~l~  203 (301)
                      |+++...+..      +...++..|+++++++...    ..++++++++++++++++++.+++||+  |  ...+   ++
T Consensus       168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~  240 (464)
T PRK04311        168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LA  240 (464)
T ss_pred             EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HH
Confidence            9998764431      2345677899999887532    257899999999999999999999983  4  4566   99


Q ss_pred             HHHHHHHhCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          204 EIAEMARKLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +|+++|++||+++|+|...+.+.    ++-...+.+......+--++++|.+|.++.|  ..|+++++
T Consensus       241 eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~  306 (464)
T PRK04311        241 ELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGK  306 (464)
T ss_pred             HHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEc
Confidence            99999999999999999654431    2100111121111111228999999997766  48988874

>PLN02624 ornithine-delta-aminotransferase

Probab=99.63  E-value=1.1e-14  Score=136.02  Aligned_cols=211  Identities=14%  Similarity=0.081  Sum_probs=134.2

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+++|..|.-.. ..-...+.+.+++.+++.......   .....+....+++.+.+..    ..+.++++++++
T Consensus        71 d~dG~~ylD~~sg~~~~-~~Gh~~p~v~~ai~~ql~~~~~~~---~~~~~~~~~~la~~L~~~~----~~~~~~f~~SGs  142 (474)
T PLN02624         71 DPEGKKYLDFLSAYSAV-NQGHCHPKIIKALTEQAEKLTLSS---RAFYNDKFPEFAEYLTSMF----GYDMVLPMNTGA  142 (474)
T ss_pred             ECCCCEEEEcccchhcc-cCCCCCHHHHHHHHHHHHhcCCcc---cccCCHHHHHHHHHHHhhc----CCCeEEEeCChH
Confidence            34577888987763211 111246889999999987532211   1112233333444443322    246899999999


Q ss_pred             HHHHHHHHHhcC--------C-CC-EEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHH
Q 022213          118 QAVEVILSVLAR--------P-GA-NVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       118 ~al~~~~~~l~~--------~-gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +|.+.+++....        + +. +|+...-+|++...........             +..++.       .|++.++
T Consensus       143 eA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~  215 (474)
T PLN02624        143 EGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALE  215 (474)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHH
Confidence            999999985542        1 22 5777777787653222222111             111111       2678888


Q ss_pred             hhccc---CccEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          175 ALADK---NTAAMVIINPGNPCGNVFTYH-HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       175 ~~~~~---~~~~v~l~~p~nptG~~~~~~-~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +.++.   +..++++..++|++|.+++.+ .+++|.++|++||+++|+||+|..+.+.+..+ .....+...+++   ++
T Consensus       216 ~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pDiv---~l  291 (474)
T PLN02624        216 KIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPDVV---IL  291 (474)
T ss_pred             HHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCCEE---Ee
Confidence            87752   456677778899999988776 59999999999999999999998765554322 221122223344   46


Q ss_pred             cccCCCCcceeEEEEee
Q 022213          251 SKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~  267 (301)
                      ||.++.+++++|+++++
T Consensus       292 sK~lggG~~pigav~~~  308 (474)
T PLN02624        292 GKALGGGVIPVSAVLAD  308 (474)
T ss_pred             cccccCCCCcceeeeec
Confidence            89999888999999974

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.63  E-value=6.2e-17  Score=139.19  Aligned_cols=218  Identities=17%  Similarity=0.182  Sum_probs=125.6

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHH----HHhcCCCCCCCC--CCC---CHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVD----AVRSGKFNCYAT--NSG---IPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~----~~~~~~~~~Y~~--~~g---~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +|+..|||.++      +.......+    .+.+.....|-.  ..+   .++|.+.|.++.....+...+...|++++|
T Consensus         1 ~d~d~GDP~~~------E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtG   74 (363)
T PF04864_consen    1 ADADSGDPTFF------EPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTG   74 (363)
T ss_dssp             EEESS---GGG------HHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECH
T ss_pred             CCcCCCCchhh------HHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCC
Confidence            57889998754      222222221    223444445654  211   478999998888777776677778999999


Q ss_pred             HHHHHHHHHHHhcCC---C---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213          116 CKQAVEVILSVLARP---G---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       116 ~~~al~~~~~~l~~~---g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      +||.+++++.+|...   .   -+|+...|.|+.|........-......        -|...+...-+..+-+-++++|
T Consensus        75 sTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~--------Gda~~~~~~~~~~~~IElVTSP  146 (363)
T PF04864_consen   75 STQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA--------GDASNFKNSDNPSPYIELVTSP  146 (363)
T ss_dssp             HHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE--------EECCCGTT-S-CCGEEEEEESS
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc--------ccHHhhccCCCCCCeEEEEeCC
Confidence            999999999999632   1   4799999999999876654432211111        1222221111123556689999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |||.|..     .+.++   +..+..+|.|-+|.+-+|..     +..-  .++-|.++++||.-|.+|.|+||.++.+ 
T Consensus       147 NNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp-----I~~~--aD~DiMLFT~SK~TGHAGSR~GWAlVKD-  210 (363)
T PF04864_consen  147 NNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP-----ITAP--ADHDIMLFTLSKLTGHAGSRFGWALVKD-  210 (363)
T ss_dssp             -TTT-----------SS---TTTEEEEEEE-TT-STTTS--------S---B--SEEEEEHHHHCS-GGG-EEEEEES--
T ss_pred             CCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----cCCC--CCCceEEEEEecccCccccccceeeecC-
Confidence            9999998     45554   35567789999999866643     2221  1122899999999999999999999965 


Q ss_pred             CCcccchhHHHHHHhhhcc-cCCCcccccc
Q 022213          270 NGIFQKSGIIDSIKDCLSI-YSDIPTFIQV  298 (301)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~  298 (301)
                            +++.++|..+..+ ..++|.-+|.
T Consensus       211 ------~~Va~kM~~y~~lnTiGvS~dsQL  234 (363)
T PF04864_consen  211 ------EEVAKKMTKYMELNTIGVSRDSQL  234 (363)
T ss_dssp             ------HHHHHHHHHHHHHHCSS--HHHHH
T ss_pred             ------HHHHHHHHHHHHHhcccCcHHHHH
Confidence                  4688999888765 4478877775

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=2.5e-14  Score=127.32  Aligned_cols=190  Identities=19%  Similarity=0.238  Sum_probs=143.7

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP  137 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~  137 (301)
                      .+.++.+++++.+.+    .++..+  -...+.+.+.+.+...++.. +.+-+++++++|.+++.++.++++|||+|++.
T Consensus        14 ~~v~~~V~~am~~~~----~~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~   86 (383)
T COG0075          14 VPVPPRVLLAMARPM----VGHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVV   86 (383)
T ss_pred             CCCCHHHHHHhcCCC----CCCCCH--HHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence            456677777765543    222333  12344444444444444422 23557788999999999999999999999999


Q ss_pred             CCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213          138 RPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR  213 (301)
Q Consensus       138 ~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~  213 (301)
                      ..+.++  +..+++++|.++..+...  .+..++++++++.+++  ..++|+++|.-.+||+..+   +++|+++|++||
T Consensus        87 ~nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g  161 (383)
T COG0075          87 VNGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHG  161 (383)
T ss_pred             eCChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcC
Confidence            888875  578999999999998875  4456999999999985  4568899999999999999   999999999999


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeC
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTND  268 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~  268 (301)
                      .++|+|.+-+.    +.....+..+.-+   +++.+.-|++++ ||  +|.+.+++
T Consensus       162 ~l~iVDaVsS~----Gg~~~~vd~wgiD---v~itgSQK~l~~PPG--la~v~~S~  208 (383)
T COG0075         162 ALLIVDAVSSL----GGEPLKVDEWGID---VAITGSQKALGAPPG--LAFVAVSE  208 (383)
T ss_pred             CEEEEEecccC----CCcccchhhcCcc---EEEecCchhccCCCc--cceeEECH
Confidence            99999999885    3344456666554   899999999888 57  67777754

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.62  E-value=3.8e-14  Score=125.71  Aligned_cols=178  Identities=20%  Similarity=0.148  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  161 (301)
                      ...+.+.++++.        ...++++++++..|+..++..|+..|++|+.....|.+...+    ....|++..+++. 
T Consensus        79 ~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~-  149 (409)
T KOG0053|consen   79 RDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV-  149 (409)
T ss_pred             hHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech-
Confidence            456777777776        456699999999999999999999999999999999876544    4467888887765 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            -+++++++++++++++|++.+|.||+..+.+   +++|.++|+++|+++|+|+.++...+.  ++.+++   .+
T Consensus       150 ------~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~--~pL~lG---AD  215 (409)
T KOG0053|consen  150 ------DDLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQ--DPLPLG---AD  215 (409)
T ss_pred             ------hhHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccccc--ChhhcC---CC
Confidence                  4678899999989999999999999999999   888888888999999999999986433  233332   22


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccc
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTF  295 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  295 (301)
                         |++.|.+|.++...==+|-+++.+.      +++.++++.... +.++.+++
T Consensus       216 ---IV~hSaTKyi~Ghsdvi~G~iv~n~------~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  216 ---IVVHSATKYIGGHSDVIGGSVVLNS------EELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             ---EEEEeeeeeecCCcceeeeEEecCc------HHHHHHHHHHHHHhcCCCCHH
Confidence               9999999999886544444444332      358888887754 45555543

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.62  E-value=3.8e-14  Score=131.92  Aligned_cols=246  Identities=15%  Similarity=0.085  Sum_probs=147.6

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+++.+||+..|--... --..++.+.+++.++++....  ........+.+..+++.+....+. ...+.+++++++
T Consensus        49 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~la~~L~~~~p~-~~~~~v~f~~sG  124 (451)
T PRK06918         49 TDVDGNQYIDFAGAIGTIN-VGHSHPKVKEALHKQVDQYIH--TGFNVMMYEPYIELAEKLAALAPG-SFDKKVLFLNSG  124 (451)
T ss_pred             EeCCCCEEEEcCCchhhcC-CCCCCHHHHHHHHHHHHhccC--ccccccccHHHHHHHHHHHHhCCC-CCCCEEEEcCCc
Confidence            3446888999877732111 123456788999998874321  111112245566677766553221 112589999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC--CCCCCC--------H
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE--RNWEVD--------L  170 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~--~~~~~~--------~  170 (301)
                      ++|.+.+++....  ...+|+...-+|++........ +.             .+..+|....  ......        .
T Consensus       125 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (451)
T PRK06918        125 AEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMI  204 (451)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHH
Confidence            9999999987642  2367888888898764433322 10             0112221100  000111        1


Q ss_pred             HHHHhhc----ccCccEEEEcCCCCCc-ccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE
Q 022213          171 DAVEALA----DKNTAAMVIINPGNPC-GNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV  244 (301)
Q Consensus       171 ~~l~~~~----~~~~~~v~l~~p~npt-G~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v  244 (301)
                      +.+++.+    ..+..+.++..|-... |.++ +.+.+++|.++|++||+++|+||+|..+.+.+. +.++..++...+ 
T Consensus       205 ~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~v~pD-  282 (451)
T PRK06918        205 EEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFDVVPD-  282 (451)
T ss_pred             HHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcCCCCC-
Confidence            2233322    2234566777775544 6544 456699999999999999999999999877664 334444443333 


Q ss_pred             EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                        +.|+||.++ +|+|+||++++.        ++++.+..... ...+.++++|.+
T Consensus       283 --i~t~sK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~g~~l~~aa  327 (451)
T PRK06918        283 --LITVSKSLG-AGVPISGVIGRK--------EIMDESAPGELGGTYAGSPLGCAA  327 (451)
T ss_pred             --EEeeehhhc-CCCccEEEEEcH--------HHHhccCCCCcCcCCCcCHHHHHH
Confidence              338999987 899999999853        46666543322 234566666654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.61  E-value=2.1e-13  Score=125.83  Aligned_cols=192  Identities=19%  Similarity=0.170  Sum_probs=131.9

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCC-----CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATN-----SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~  133 (301)
                      +.++.+.+++.+.+.......|.-.     .-+..+++.+++++        ..+..+++++++.|+..++.+ +.+||+
T Consensus        92 ~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~--------gae~alvv~sg~aAi~l~l~~-l~~Gde  162 (454)
T TIGR00474        92 PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT--------GAEDALVVNNNAAAVLLALNT-LAKGKE  162 (454)
T ss_pred             CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHH-hCCcCE
Confidence            4578889999888773221122211     11367888888887        234567788888999888855 579999


Q ss_pred             EEEcCCCCcc------hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--c--cCCCHHHHH
Q 022213          134 VLLPRPGWPY------YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--G--NVFTYHHLQ  203 (301)
Q Consensus       134 Vl~~~p~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G--~~~~~~~l~  203 (301)
                      |++....|..      +...++..|+++++++...    ..++++++++++++++++++.+++|++  |  ...+   ++
T Consensus       163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~  235 (454)
T TIGR00474       163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IA  235 (454)
T ss_pred             EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HH
Confidence            9999866432      2345677899999887532    257899999999999999999999985  6  4667   99


Q ss_pred             HHHHHHHhCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          204 EIAEMARKLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+++|++||+++++|...+.+.    |+-...+.+......+--++++|.+|.++.|  ..|+++++.
T Consensus       236 ~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~~  302 (454)
T TIGR00474       236 ELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVGKK  302 (454)
T ss_pred             HHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEECH
Confidence            99999999999999998644331    1000111111111111128899999997766  479888753

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.61  E-value=2.4e-14  Score=131.53  Aligned_cols=219  Identities=13%  Similarity=0.117  Sum_probs=137.8

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .++..+++|..|-... ..-...+.+.+++.++++...   +............+++.+.+..+    .+.+++++++++
T Consensus        34 ~~g~~~lD~~s~~~~~-~~Gh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~  105 (401)
T TIGR01885        34 VEGKRYLDFLSAYSAV-NQGHCHPKIVKALTEQAQKLT---LSSRAFYNDVFGEFAEYVTKLFG----YDKVLPMNTGAE  105 (401)
T ss_pred             CCCCEEEEcccCHhhc-cCCCCCHHHHHHHHHHHHhcc---ccccccCCHHHHHHHHHHHhhcC----CCEEEEeCccHH
Confidence            4578899998863221 111236788899988876422   11111112333444444433222    368999999999


Q ss_pred             HHHHHHHHhcC---------C-CCEEEEcCCCCcch-HHHHHhcCc------------eEEEeecCCCCCCCCCHHHHHh
Q 022213          119 AVEVILSVLAR---------P-GANVLLPRPGWPYY-EGIAQRKQV------------EVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       119 al~~~~~~l~~---------~-gd~Vl~~~p~~~~~-~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      |++.+++.+..         + .++|+...-+|++. ...+...+.            .+..++.       .|++.+++
T Consensus       106 A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  178 (401)
T TIGR01885       106 AVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEE  178 (401)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHH
Confidence            99999998632         2 36777788887753 333332221            1111211       36788888


Q ss_pred             hccc---CccEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          176 LADK---NTAAMVIINPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       176 ~~~~---~~~~v~l~~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++   +..++++..+++++|...+. +.+++|.++|++||+++|+||+|..+.+.+..+ ......-..+++   ++|
T Consensus       179 ~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~g  254 (401)
T TIGR01885       179 ALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LLG  254 (401)
T ss_pred             HHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---Eee
Confidence            7752   34566666679999998864 479999999999999999999998765555322 222222223344   467


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |.++..|+|+||++++.        +++..++.
T Consensus       255 K~l~~g~~~ig~v~~~~--------~i~~~~~~  279 (401)
T TIGR01885       255 KALSGGVYPVSAVLADD--------DVMLTIKP  279 (401)
T ss_pred             ccccCCCCCcEEEEEcH--------HHHhhccC
Confidence            99987779999999743        46666654

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.61  E-value=6.5e-14  Score=129.17  Aligned_cols=245  Identities=13%  Similarity=0.072  Sum_probs=150.0

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-... .-..++.+.+++.+++.......+.  ....+....+++.+....+ ....+.++++++
T Consensus        34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~~~~--~~~~~~~~~la~~l~~~~p-~~~~~~~~f~~s  109 (421)
T PRK09792         34 LKDVEGNEYIDFAAGIAVLN-TGHRHPDLVAAVEQQLQQFTHTAYQ--IVPYESYVTLAEKINALAP-VSGQAKTAFFTT  109 (421)
T ss_pred             EEeCCCCEEEEccCchhhhc-CCCCCHHHHHHHHHHHHhccCcccC--ccCCHHHHHHHHHHHHhCC-CCCCceEEEeCC
Confidence            34456888999977732211 1234578889999888743221121  1223455566666654221 112358999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCC----CHHHHHh
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEV----DLDAVEA  175 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~----~~~~l~~  175 (301)
                      +++|++.+++....  ...+|+...-+|++........ +.             .+..++..... ...    +++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~  188 (421)
T PRK09792        110 GAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIER  188 (421)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHH
Confidence            99999999987752  2357888888898763322221 11             11222221110 011    3467777


Q ss_pred             hccc-----CccEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          176 LADK-----NTAAMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       176 ~~~~-----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      .+.+     +..++++.-.++++|..+ +.+.+++|.++|++||+++|+||++..+.+.+. ...+..++...+   +.+
T Consensus       189 ~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~~pD---i~t  264 (421)
T PRK09792        189 LFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYADKPD---LMT  264 (421)
T ss_pred             HHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcCCCCc---EEE
Confidence            6642     334454444488999866 899999999999999999999999999877664 334444433333   458


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      +||.++ +|+++||++++.        ++++.+..... .....++++|.
T Consensus       265 ~gK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~gnpl~~a  305 (421)
T PRK09792        265 MAKSLA-GGMPLSGVVGNA--------NIMDAPAPGGLGGTYAGNPLAVA  305 (421)
T ss_pred             eehhhc-CCCceEEEEEcH--------HHHhccCCCCcCCCCCCCHHHHH
Confidence            999965 899999998743        35555443221 12245555554

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.61  E-value=1e-13  Score=124.26  Aligned_cols=156  Identities=25%  Similarity=0.257  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~  160 (301)
                      ....|.+.++++-        ..++.+.++++..||..++.+++++||+|+++...|.+..    .+++..|+++.+++.
T Consensus        64 T~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~  135 (396)
T COG0626          64 TRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP  135 (396)
T ss_pred             cHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence            4567888888775        5678999999999999999999999999999999998754    344568888887753


Q ss_pred             CCCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          161 LPERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                             .+.+.+++++. +++++|++.+|.||+-.+.+   +.+|+++|+++|+++|+|+.|..-.+..  +..++   
T Consensus       136 -------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~--PL~~G---  200 (396)
T COG0626         136 -------GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR--PLELG---  200 (396)
T ss_pred             -------CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC--hhhcC---
Confidence                   34556666666 48999999999999999888   9999999999999999999999855532  22222   


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      -+   |++.|.+|.++..+==+|-+++
T Consensus       201 aD---IVvhSaTKyl~GHsDvl~G~v~  224 (396)
T COG0626         201 AD---IVVHSATKYLGGHSDVLGGVVL  224 (396)
T ss_pred             CC---EEEEeccccccCCcceeeeEEe
Confidence            22   9999999998886544444444

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.60  E-value=7.1e-14  Score=126.78  Aligned_cols=202  Identities=17%  Similarity=0.162  Sum_probs=141.1

Q ss_pred             HHHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022213           62 VEAEDA-IVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~-~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~  140 (301)
                      ..+.++ +...+.+.+  .|..+....+|++++++++        ..+.++.|++++.|+.++....++|||.|  +.++
T Consensus        50 ~aMs~~q~a~~~~GDe--~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~  117 (450)
T TIGR02618        50 NAMSDKQWAGLMMGDE--AYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNM  117 (450)
T ss_pred             HHHHHHHHHHhhhcch--hhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCce
Confidence            345454 555554443  5888778899999999998        45689999999999998877778999987  6677


Q ss_pred             Ccc-hHHHHHhcCceEEEeecC--------CCCCCCCCHHHHHhhccc----CccEEEEcCCCCC-cccCCCHHHHHHHH
Q 022213          141 WPY-YEGIAQRKQVEVRHFDLL--------PERNWEVDLDAVEALADK----NTAAMVIINPGNP-CGNVFTYHHLQEIA  206 (301)
Q Consensus       141 ~~~-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~np-tG~~~~~~~l~~i~  206 (301)
                      |.. +...+...|..++.++.+        ....+.+|++.+++.+++    +++.+++.+++|. .|..++.+++++|.
T Consensus       118 ~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~  197 (450)
T TIGR02618       118 YFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVR  197 (450)
T ss_pred             eHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHH
Confidence            754 444467788755544322        123467899999999975    2346778888885 48999999999999


Q ss_pred             HHHHhCCCeEEEccCCcc-c-cc-----CCCCCCCc----cccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCccc
Q 022213          207 EMARKLRVMVVADEVYGH-L-TF-----GSIPYTPM----GLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       207 ~~~~~~~~~ii~D~~y~~-~-~~-----~~~~~~~~----~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~  274 (301)
                      ++|++||+.+|+|.+... . .|     .+..-.++    .......+ ....|..|.++.| |   |+++..+      
T Consensus       198 elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD-~~~~S~~Kd~~~~~G---G~l~~~d------  267 (450)
T TIGR02618       198 ELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYAD-GCTMSGKKDCLVNIG---GFLCMND------  267 (450)
T ss_pred             HHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCc-EEEEeeccCCCCCCc---eEEEeCC------
Confidence            999999999999999876 1 11     01111122    11111112 4777999997776 4   6666554      


Q ss_pred             chhHHHHHHhhh
Q 022213          275 KSGIIDSIKDCL  286 (301)
Q Consensus       275 ~~~~~~~~~~~~  286 (301)
                       ++++++++...
T Consensus       268 -~~l~~k~r~~~  278 (450)
T TIGR02618       268 -DEMFQSAKELV  278 (450)
T ss_pred             -HHHHHHHHHHh
Confidence             35778877763

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.59  E-value=5.1e-14  Score=129.94  Aligned_cols=245  Identities=16%  Similarity=0.098  Sum_probs=144.3

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|--... .-..++.+.+++.+++.......+..  ...+.+.++++.+.+..+ ....+.++++++++
T Consensus        29 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~a~~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGs  104 (420)
T TIGR00700        29 DVDGNRLIDFASGIAVLN-IGHSHPRVVDAVRTQVAEFTHTCFMV--TPYEGYVALAEKLNRIAP-GSGPKKSVFFNSGA  104 (420)
T ss_pred             eCCCCEEEECccCHHhcc-CCCCCHHHHHHHHHHHHhccCccccc--cCChHHHHHHHHHHHhCC-CCCCCEEEEeCCcH
Confidence            446888999977732111 11245688899999887533222211  122344455655544221 11235899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC-CC--------CCCCHHH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE-RN--------WEVDLDA  172 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~-~~--------~~~~~~~  172 (301)
                      +|++.+++....  ...+|+...-+|++........ +.             .+..++.... ..        +.-+++.
T Consensus       105 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (420)
T TIGR00700       105 EAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAA  184 (420)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHH
Confidence            999999987642  3357888888898764333221 10             1111221100 00        0002445


Q ss_pred             HHhhcc----cCccEEEEcCC-CCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213          173 VEALAD----KNTAAMVIINP-GNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT  246 (301)
Q Consensus       173 l~~~~~----~~~~~v~l~~p-~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~  246 (301)
                      +++.+.    ....+.++.-| ..-+|.+++. +.+++|.++|++||+++|+||+|..+.+.+. ...+..++...++  
T Consensus       185 ~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~~~pDi--  261 (420)
T TIGR00700       185 ARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEGPEPDL--  261 (420)
T ss_pred             HHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcCCCCCE--
Confidence            665542    12334444555 5567876654 5599999999999999999999999876653 2233333323333  


Q ss_pred             EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                       .++||.++ +|+|+||++++.        ++++.+.... ....+.++++|.+
T Consensus       262 -~~lsK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~~~pl~~aa  305 (420)
T TIGR00700       262 -ITTAKSLA-DGLPLSGVTGRA--------EIMDAPAPGGLGGTYAGNPLACAA  305 (420)
T ss_pred             -EEeecccc-CCcceEEEEecH--------HHHhhcCCCCcCCCCCcCHHHHHH
Confidence             36999987 899999999853        4666664322 2233556666654

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.59  E-value=8.6e-14  Score=126.19  Aligned_cols=165  Identities=15%  Similarity=0.135  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~  160 (301)
                      ...+|.+.++++.        ..+..+++++++.|+.+++.+++++||+|+++.+.|.+..    ..+...|+++++++.
T Consensus        65 ~~~~lE~~la~le--------g~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~  136 (384)
T PRK06434         65 TVQAFEEKYAVLE--------NAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT  136 (384)
T ss_pred             hHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence            3567888888886        3467899999999999999999999999999888776543    556778999999987


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                      +..+.+.++        .+++++|++.+|+|||+.+.+   +++|+++|++++  +++|.++..-.    ...++.. ..
T Consensus       137 ~~~~~~~l~--------~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~----~~~pl~~-ga  198 (384)
T PRK06434        137 DRLNSLDFD--------PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY----NQNPLDL-GA  198 (384)
T ss_pred             CChhheeec--------CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc----cCCchhc-CC
Confidence            543332222        135789999999999999987   888888999998  45699975422    2223322 22


Q ss_pred             CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +   ++++|.+|.++.+| .=.|.++..+       +++.++++..
T Consensus       199 D---ivv~S~tK~i~G~~d~~gG~vv~~~-------~~~~~~~~~~  234 (384)
T PRK06434        199 D---VVIHSATKYISGHSDVVMGVAGTNN-------KSIFNNLVER  234 (384)
T ss_pred             C---EEEeecccccCCCCCceEEEEecCc-------HHHHHHHHHH
Confidence            2   88899999987766 3345554433       2355555543

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.58  E-value=5.6e-14  Score=121.71  Aligned_cols=158  Identities=23%  Similarity=0.251  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch----HHHHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~  160 (301)
                      ....|.+.||.+-        ..---+.+.+++.|+..++..++++||.|+...--|.+.    ...++..|+++.+++.
T Consensus        63 T~~vlE~RiAaLE--------GG~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~  134 (426)
T COG2873          63 TTDVLEERIAALE--------GGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP  134 (426)
T ss_pred             hHHHHHHHHHHhh--------cchhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence            4567888888774        122356677889999999999999999999998888764    4456789999999864


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++++++++|+|++..-.||.+.+.+   +++|+++|+++++++|+|..+..-++    ..|+. ++.
T Consensus       135 -------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl----~rP~~-hGA  199 (426)
T COG2873         135 -------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL----CRPIE-HGA  199 (426)
T ss_pred             -------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee----cchhh-cCC
Confidence                   4789999999999999999999999999999   99999999999999999999886322    12221 222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +   |++.|+||..|..|.-+|-+++-.
T Consensus       200 D---IVvHS~TK~igGhGt~iGG~iVD~  224 (426)
T COG2873         200 D---IVVHSATKYIGGHGTAIGGVIVDG  224 (426)
T ss_pred             C---EEEEeecccccCCccccceEEEeC
Confidence            2   999999999999999999988744

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.57  E-value=1.6e-13  Score=126.63  Aligned_cols=247  Identities=13%  Similarity=0.054  Sum_probs=148.2

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|.-... .-..++.+.++++++++......+..  ...+.+..+++.+....+ ....+.++++++
T Consensus        34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~~~f~~s  109 (421)
T PRK06777         34 LWDVEGREYIDFAAGIAVLN-TGHRHPKVVAAVRQQLDQFTHTAYQI--VPYASYVTLAERINALAP-IDGPAKTAFFTT  109 (421)
T ss_pred             EEeCCCCEEEEcccCHHhhc-cCCCCHHHHHHHHHHHhhcccccccc--cCChHHHHHHHHHHHhCC-CCCCceEEEeCC
Confidence            33456888999977732111 11245678899999887532211211  123344556666544221 112468999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce-------------EEEeecCCCC-C--CCCCHHHHHhh
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE-------------VRHFDLLPER-N--WEVDLDAVEAL  176 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~~~-~--~~~~~~~l~~~  176 (301)
                      +++|.+.+++....  ...+|+...-+|++........ +..             +..++..... +  ...+++.+++.
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  189 (421)
T PRK06777        110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL  189 (421)
T ss_pred             cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence            99999999987642  2357888888898764433321 210             0111111000 0  01135567766


Q ss_pred             ccc----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          177 ADK----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       177 ~~~----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +..    ...+.++..| .+..|. +.+.+.+++|.++|++||+++|.||+|..+.+.+. ......++...+++   ++
T Consensus       190 ~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~pDiv---~~  265 (421)
T PRK06777        190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDVKPDLI---TM  265 (421)
T ss_pred             HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCCCCCEE---ee
Confidence            642    2234444455 667775 67899999999999999999999999998866653 32333343333444   79


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++ +|+|+||++++.        ++++.+..... ...+.+++.|.+
T Consensus       266 sK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~p~~~aa  306 (421)
T PRK06777        266 AKSLG-GGMPISAVVGRA--------EVMDAPAPGGLGGTYAGNPLAVAA  306 (421)
T ss_pred             ehhhc-CCCceEEEEEcH--------HHHhccCCCCCCCCCCcCHHHHHH
Confidence            99987 899999999843        46666543322 233456666544

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.55  E-value=9.6e-14  Score=120.45  Aligned_cols=204  Identities=15%  Similarity=0.181  Sum_probs=140.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP  139 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p  139 (301)
                      +.+++.+++..+-. .....|+..+-...+.+.+++.+        ..+.+++++++|++..+++.+.++||+.|++..-
T Consensus        12 ~~~~m~eam~~a~~-~~~~~YG~D~~~~~~e~~~ae~~--------g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~   82 (342)
T COG2008          12 PTPEMREALAAANA-VGDDVYGEDPTTNALEQRIAELF--------GKEAALFVPSGTQANQLALAAHCQPGESVICHET   82 (342)
T ss_pred             CCHHHHHHHHhccc-cCCCCCCCCHHHHHHHHHHHHHh--------CCceEEEecCccHHHHHHHHHhcCCCCeEEEecc
Confidence            44688888876542 23336777655556666666665        3388999999999999999999999999999988


Q ss_pred             CCcchHH--HHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          140 GWPYYEG--IAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       140 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      .|.....  ..+..+ ....++..+..+..+++++++..+..      .+..+++.+.+|-.|.+++.+++++|.++|++
T Consensus        83 aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~  161 (342)
T COG2008          83 AHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKE  161 (342)
T ss_pred             ccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHH
Confidence            8864321  222222 11223344545667999999997652      34556666666688999999999999999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +|+.+..|.+-.....-... ++...+....+ .+..++||..+.|   +|.|++.+.       +++++++..
T Consensus       162 ~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D-~v~~~~tK~g~~~---~gAiv~gn~-------~~~~~a~~~  223 (342)
T COG2008         162 HGLPLHMDGARLANALVALG-VALKTIKSYVD-SVSFCLTKGGGAP---VGAIVFGNR-------DFAKRARRW  223 (342)
T ss_pred             hCCceeechHHHHHHHHHcC-CCHHHHHhhCC-EEEEecccCCcce---eeeEEEcCH-------HHHHHHHHH
Confidence            99999999986543221111 23333333333 4555999996666   499888664       466666554

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.55  E-value=3.8e-14  Score=128.01  Aligned_cols=174  Identities=17%  Similarity=0.201  Sum_probs=122.1

Q ss_pred             CCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec
Q 022213           82 TNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL  160 (301)
Q Consensus        82 ~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~  160 (301)
                      .+.| +.+..+..|+.+..       ....++++|+|.++.+++.+++++||+|+++..+|-+....+...|+.+++++.
T Consensus        63 ~p~G~I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p  135 (417)
T PF01276_consen   63 DPEGIIKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPP  135 (417)
T ss_dssp             TTBTHHHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEE
T ss_pred             CCccHHHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecC
Confidence            3344 46788888888732       346788999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCC----CCCH-----HHHHhhcccC--ccE---EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213          161 LPERNW----EVDL-----DAVEALADKN--TAA---MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT  226 (301)
Q Consensus       161 ~~~~~~----~~~~-----~~l~~~~~~~--~~~---v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~  226 (301)
                      . .+.+    .++.     +.+++.+++.  .++   +++++|+. .|++.+   +++|+++|+++++.|++||+|+...
T Consensus       136 ~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~  210 (417)
T PF01276_consen  136 E-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHF  210 (417)
T ss_dssp             E-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred             C-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccc
Confidence            5 3322    2455     8888888653  344   88888875 799999   9999999999999999999999653


Q ss_pred             cCCCCCCCccccC----CCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          227 FGSIPYTPMGLFG----SIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       227 ~~~~~~~~~~~~~----~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .-...+.+.....    .+..++++.|++|.  ++++.-+.++--+.
T Consensus       211 ~F~~lp~~a~~~gad~~~~~~~~vvqS~HKt--L~altQts~lh~~~  255 (417)
T PF01276_consen  211 GFHPLPRSALALGADRPNDPGIIVVQSTHKT--LPALTQTSMLHVKG  255 (417)
T ss_dssp             GCSGGGTTCSSTTSS-CTSBEEEEEEEHHHH--SSS-TT-EEEEEET
T ss_pred             cCCCCccchhhccCccccccceeeeechhhc--ccccccceEEEecC
Confidence            2222121111111    12347999999999  46666665544443

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.53  E-value=7.7e-13  Score=121.69  Aligned_cols=199  Identities=16%  Similarity=0.110  Sum_probs=139.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEE--cCCHHHHHHHHHHHhcC--------
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYV--TLGCKQAVEVILSVLAR--------  129 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~--t~g~~~al~~~~~~l~~--------  129 (301)
                      .+.+.+.+...+.... .++.......++.+.+.+++.+.+|.+- + +++..  |+|+||++..++.+...        
T Consensus        54 ~p~~~~~~~~~l~~~~-~np~s~~~~~~le~~~~~~la~llg~~~-~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~  131 (431)
T TIGR01788        54 EPEARKLMDETINKNM-IDKDEYPQTAEIENRCVNMLADLWHAPA-KDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA  131 (431)
T ss_pred             CHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCC-CCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence            3457788877775322 1222222334666666666666555321 2 45544  89999999988866531        


Q ss_pred             CC-----CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213          130 PG-----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE  204 (301)
Q Consensus       130 ~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  204 (301)
                      .|     -.|+++.-.|.++...++..|+++..+++++ +++.+|++.|++.+++++.+|+++..+|.||.+.+   +++
T Consensus       132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~  207 (431)
T TIGR01788       132 AGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKA  207 (431)
T ss_pred             cCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHH
Confidence            12     3688999999999999988999999998865 34568999999999888999999999999999999   888


Q ss_pred             HHHHHHhC------CCeEEEccCCccccc---CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          205 IAEMARKL------RVMVVADEVYGHLTF---GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       205 i~~~~~~~------~~~ii~D~~y~~~~~---~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |+++|+++      ++++.+|.+|+.+..   .++....+..  ...+ -+..|.+|. +..-..+|.+++.+.
T Consensus       208 I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~--~~~D-Sis~s~HK~-~~~P~g~G~l~~r~~  277 (431)
T TIGR01788       208 LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRL--PRVK-SINVSGHKY-GLVYPGVGWVIWRDE  277 (431)
T ss_pred             HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCC--CCce-EEEECchhc-cCCCCCcEEEEEeCh
Confidence            88889999      999999999995431   1211111211  1111 456699998 434455888887653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.52  E-value=2.3e-14  Score=124.99  Aligned_cols=192  Identities=15%  Similarity=0.158  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG  140 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~  140 (301)
                      .+.+.+++.+......  .|+......+|++.+++++        ..+..++++++|.+..++++++++|++.|++..++
T Consensus         8 ~~~m~~a~~~a~~gd~--~Yg~D~~~~~l~~~i~~l~--------g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~a   77 (290)
T PF01212_consen    8 TPAMLEAMAAANVGDD--AYGEDPTTARLEERIAELF--------GKEAALFVPSGTMANQLALRAHLRPGESVICADTA   77 (290)
T ss_dssp             -HHEEHHHHHTTSB-C--CTTSSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTE
T ss_pred             CHHHHHHHHccccCCc--ccCCChhHHHHHHHHHHHc--------CCCEEEEeCCCChHHHHHHHHHHhcCCceeccccc
Confidence            3677788855544333  5888777889999999998        44677899999999999999999999999999998


Q ss_pred             Ccch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCC-cccCCCHHHHHHHHHHHH
Q 022213          141 WPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNP-CGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       141 ~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~np-tG~~~~~~~l~~i~~~~~  210 (301)
                      |...   .......|.++..++...  +..++++++++.+..      +++.|++.+|+|. -|.+++.+++++|.++|+
T Consensus        78 Hi~~~E~ga~~~~~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~  155 (290)
T PF01212_consen   78 HIHFDETGAIEELSGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR  155 (290)
T ss_dssp             HHHHSSTTHHHHHTTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred             eeeeeccchhhHhcCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence            7632   334456899988887532  145999999998854      4678999999986 489999999999999999


Q ss_pred             hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +||+.++.|.+-....-.. .-.++..+....+ ++..|++|..++++   |-+++-++
T Consensus       156 ~~gl~lhmDGARl~~a~~~-~~~~~~e~~~~~D-~v~~~~tK~~g~~~---Gavl~~~~  209 (290)
T PF01212_consen  156 EHGLPLHMDGARLANAAAA-LGVSLAEIAAGAD-SVSFGGTKNGGAPG---GAVLAGNK  209 (290)
T ss_dssp             HHT-EEEEEETTHHHHHCH-HHHHHHHHHTTSS-EEEEETTSTT-SSS---EEEEEESH
T ss_pred             hCceEEEEehhhHHHhhhc-ccccHHHHhhhCC-EEEEEEEccccccc---ceEEEech
Confidence            9999999999954321100 0001111112222 55559999988876   77666553

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=99.51  E-value=1.7e-13  Score=107.99  Aligned_cols=98  Identities=24%  Similarity=0.447  Sum_probs=78.9

Q ss_pred             CCCCeeeccCCCCCC-------------CCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCC--CC
Q 022213           40 DPRPVVPLGYGDPTA-------------FPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLP--YK  104 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~-------------~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~  104 (301)
                      ++.++|+|+.++..+             .|++.+|+.+.+++.+.      ..|.+..|..+||+++|+|+.+.++  +.
T Consensus        41 np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~------a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~  114 (153)
T PLN02994         41 NPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDI------ALFQDYHGLANFRKAIANFMAEARGGRVK  114 (153)
T ss_pred             CCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHH------hcCCCCCCcHHHHHHHHHHHHHHhCCCCc
Confidence            466788888875421             13455555545555442      2488889999999999999999877  66


Q ss_pred             CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc
Q 022213          105 LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY  143 (301)
Q Consensus       105 ~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~  143 (301)
                      +++++|++|+|++++++.++++++++||.|++++|+|++
T Consensus       115 ~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994        115 FDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             cchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            889999999999999999999999999999999999974

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.50  E-value=1.6e-12  Score=118.34  Aligned_cols=183  Identities=20%  Similarity=0.201  Sum_probs=130.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc-chHHHHHhcCceEEE
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEGIAQRKQVEVRH  157 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~-~~~~~~~~~g~~~~~  157 (301)
                      .|+.......|++.+++++        ..+.++.+++++.|+.++....+++||.|  +..+|. .....+...|..  +
T Consensus        73 ~Yagd~s~~~LE~~vAe~l--------G~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~--f  140 (460)
T PRK13237         73 AYAGSRNFYHLEETVQEYY--------GFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGI--F  140 (460)
T ss_pred             hhcCCCcHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcE--E
Confidence            5887778899999999998        44679999999999998876678899975  444444 333435667774  4


Q ss_pred             eecC----------CCCCCCCCHHHHHhhcccC----ccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213          158 FDLL----------PERNWEVDLDAVEALADKN----TAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVY  222 (301)
Q Consensus       158 ~~~~----------~~~~~~~~~~~l~~~~~~~----~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y  222 (301)
                      +++.          ....+.+|++.+++.++++    +..+.+.+++|.. |...|.+++++|.++|++||+.+|+|.+.
T Consensus       141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAr  220 (460)
T PRK13237        141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATR  220 (460)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcc
Confidence            4442          1235679999999998753    3346777888887 79999999999999999999999999998


Q ss_pred             ccc----c------cCCCCCC----CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          223 GHL----T------FGSIPYT----PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       223 ~~~----~------~~~~~~~----~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ..-    +      |.+....    .+.++..    +.+.|++|.++.+-  -|+++..+       +++.++++...
T Consensus       221 a~gna~fI~~re~~y~~~~i~ei~~e~~s~aD----~~t~S~~K~~~~~~--GG~i~t~D-------~eL~~~~r~~~  285 (460)
T PRK13237        221 CVENAYFIKEREEGYQDKSIKEIVHEMFSYAD----GCTMSGKKDCLVNI--GGFLAMND-------EELFDEAKELV  285 (460)
T ss_pred             hhcChhhhcccccccCCCcHhHHhhhccCcCc----EEEEeCCCCCCCCC--ceEEEECC-------HHHHHHHHHhc
Confidence            742    1      2111110    1112222    66678999977652  38887754       36888888763

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.50  E-value=1.1e-12  Score=130.00  Aligned_cols=177  Identities=14%  Similarity=0.149  Sum_probs=133.3

Q ss_pred             CCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH----HHHHHHHHHhcCC-CC----EEEEcCCCCcch
Q 022213           77 FNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK----QAVEVILSVLARP-GA----NVLLPRPGWPYY  144 (301)
Q Consensus        77 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~----~al~~~~~~l~~~-gd----~Vl~~~p~~~~~  144 (301)
                      ++-|.|   .+|..++...+.+++.+..|    .+.|+++++++    +++.++++++.++ ||    .|+++...|...
T Consensus       554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g----~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn  629 (993)
T PLN02414        554 IHPFAPVDQAQGYQEMFEDLGDLLCEITG----FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTN  629 (993)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccC
Confidence            445555   33544444444444433323    38999999999    8999999999865 88    899999999988


Q ss_pred             HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213          145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV  221 (301)
Q Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~  221 (301)
                      ...+...|++++.++.+.  +..+|+++|++.+++   ++++|++++|+|-+|...+   +++|+++|+++|+++++|.+
T Consensus       630 ~a~a~~~G~~vv~v~~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgA  704 (993)
T PLN02414        630 PASAAMCGMKIVVVGTDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGA  704 (993)
T ss_pred             HHHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEec
Confidence            777888999999999853  335999999999984   6788999999999999988   99999999999999999999


Q ss_pred             CcccccCCCCCCCccccCCCCCEEEEecCcccCCC----CcceeEEEEeeC
Q 022213          222 YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV----PGWRFGWLVTND  268 (301)
Q Consensus       222 y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~----~G~rvG~~~~~~  268 (301)
                      +..-...   ......++-+   ++.+|.+|+|+.    .|-.+|++.+..
T Consensus       705 q~~a~~~---l~~p~~~GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~~~  749 (993)
T PLN02414        705 NMNAQVG---LTSPGFIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKK  749 (993)
T ss_pred             CHHhccC---cCCccccCCC---EEEecCCccCCcCcccCCCCeeeEEEch
Confidence            9652221   1122233333   888899997763    356689987743

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.50  E-value=3.4e-12  Score=117.64  Aligned_cols=215  Identities=13%  Similarity=0.039  Sum_probs=133.9

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHH-hcCCC-CCCCC----CCCCHHHHH----
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAV-RSGKF-NCYAT----NSGIPPARR----   91 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~-~~~~~-~~Y~~----~~g~~~lr~----   91 (301)
                      ...|..+++.....     ....++|-..+.      ..++.+++++...+ +.... ..+..    ...+.+|.+    
T Consensus        13 ~~~~~~~~~~~~~~-----~~~~~~l~~sen------~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~   81 (416)
T PRK13034         13 DDEVFAAINKELER-----QQDHLELIASEN------FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIE   81 (416)
T ss_pred             CHHHHHHHHHHHHH-----HhcCeeeccccc------CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHH
Confidence            34566666543321     356778766652      13678888888775 32110 01111    123456666    


Q ss_pred             HHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch-HHHHHh--cCceE--EEeecCCCCC
Q 022213           92 AIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLARPGANVLLPRPGWPYY-EGIAQR--KQVEV--RHFDLLPERN  165 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~-~~~~~~--~g~~~--~~~~~~~~~~  165 (301)
                      .+++++        ..+..+ .+++++.|+..++.+++++||+|+++...|.+. ...++.  .+...  ..++++. .+
T Consensus        82 ~la~l~--------g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~  152 (416)
T PRK13034         82 RAKQLF--------GCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LT  152 (416)
T ss_pred             HHHHHh--------CCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-cc
Confidence            777776        234564 468889999999999999999999999988762 211111  11111  2343322 24


Q ss_pred             CCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCCCCC
Q 022213          166 WEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVP  243 (301)
Q Consensus       166 ~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~  243 (301)
                      +.+|++++++.++. ++++|++.++.  +|...+   +.+|.++|+++|+++|+|++++...+.. ..+.++   .  .-
T Consensus       153 ~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~---~--~~  222 (416)
T PRK13034        153 GLIDYDEVEELAKEHKPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF---P--HA  222 (416)
T ss_pred             CCcCHHHHHHHHhhcCCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC---C--Cc
Confidence            55899999988754 56777665654  466667   7788888999999999999988655432 111111   1  12


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      -++++|++|+++.+.  -|++++++
T Consensus       223 Di~~~s~~K~l~g~~--GG~v~~~~  245 (416)
T PRK13034        223 HVVTTTTHKTLRGPR--GGMILTND  245 (416)
T ss_pred             eEEEEeCcccCCCCC--CeEEEECc
Confidence            388999999974443  37777643

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.50  E-value=2.8e-12  Score=119.13  Aligned_cols=244  Identities=16%  Similarity=0.075  Sum_probs=144.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|--... --...+.+.+++.+++....  .+....+..+.+.++++.+.+..+. ...+.++++++++
T Consensus        52 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGs  127 (443)
T PRK06058         52 DVDGNRLIDLGSGIAVTS-VGNSAPRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTPG-DHEKRSALFNSGA  127 (443)
T ss_pred             eCCCCEEEEcCcchhhhc-cCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCC-CCCCEEEEeCCcH
Confidence            445788889877731110 12345788899999887422  2222223356677777777654321 1125789999999


Q ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCC-CC---CCC--------C
Q 022213          118 QAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPE-RN---WEV--------D  169 (301)
Q Consensus       118 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~-~~---~~~--------~  169 (301)
                      +|++.+++...  ...++|+....+|+++....... +.             .+..++.... +.   ...        .
T Consensus       128 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (443)
T PRK06058        128 EAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARA  207 (443)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHH
Confidence            99999998543  23478999999999875443321 10             1111221100 00   000        1


Q ss_pred             HHHHHhhcccCccEEEEcCCCCCcc-cC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEE
Q 022213          170 LDAVEALADKNTAAMVIINPGNPCG-NV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL  247 (301)
Q Consensus       170 ~~~l~~~~~~~~~~v~l~~p~nptG-~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~  247 (301)
                      .+.+++.+..+..+.++..|.+..| .. .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+++  
T Consensus       208 ~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv--  284 (443)
T PRK06058        208 ITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLI--  284 (443)
T ss_pred             HHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEE--
Confidence            2233343333344556677766554 43 458899999999999999999999999876555332 222233333455  


Q ss_pred             ecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       248 ~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                       +++|.++ .|+++|+++++.        ++++.+..... ...+.+++++.
T Consensus       285 -~~gK~l~-~G~Pi~av~~~~--------~i~~~~~~~~~~~T~~gnpl~~a  326 (443)
T PRK06058        285 -TTAKGIA-GGLPLSAVTGRA--------EIMDAPHPGGLGGTYGGNPVACA  326 (443)
T ss_pred             -EEccccc-CCCccEEEEEcH--------HHHhhccCCCCCCCCCCCHHHHH
Confidence             4589977 799999999843        46555543321 12234555443

>PRK02769 histidine decarboxylase; Provisional

Probab=99.49  E-value=6.4e-12  Score=114.02  Aligned_cols=172  Identities=16%  Similarity=0.175  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      .++.+++.+++.+.++  .+++++  ++|+|+||++..++....  .++++|++++-.|.+....++.+|++...++.++
T Consensus        64 ~~~e~~~~~~~a~l~g--~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~  141 (380)
T PRK02769         64 FDFERDVMNFFAELFK--IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP  141 (380)
T ss_pred             HHHHHHHHHHHHHHhC--CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC
Confidence            4555555555554444  344444  889999999877765543  4788999999999999889899999888888754


Q ss_pred             CCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CeEEEccCCcccccCCC-CCCCc
Q 022213          163 ERNWEVDLDAVEALADKN---TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR---VMVVADEVYGHLTFGSI-PYTPM  235 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~---~~ii~D~~y~~~~~~~~-~~~~~  235 (301)
                        +..+|+++|++.++++   +.+|+++.++|+||.+.+   +++|+++|+++|   +++++|.+++.+...-. ...++
T Consensus       142 --~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~  216 (380)
T PRK02769        142 --NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF  216 (380)
T ss_pred             --CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence              4469999999998765   788889999999999999   888888999998   69999999997543210 11112


Q ss_pred             cccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          236 GLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       236 ~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      . +.. .--.+..|.+|.+++| ..+|.++..+
T Consensus       217 d-~~~-~vDsis~s~HK~~~~P-~g~G~l~~r~  246 (380)
T PRK02769        217 S-FAD-GIDSIAISGHKFIGSP-MPCGIVLAKK  246 (380)
T ss_pred             C-ccC-CCCEEEECCcccCCCC-CCcEEEEEeh
Confidence            1 111 1125667999985533 4588888754

>PLN03032 serine decarboxylase; Provisional

Probab=99.49  E-value=1.9e-12  Score=116.84  Aligned_cols=171  Identities=19%  Similarity=0.115  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      .++.+.+.+++.+.++  .+++++  ++|+|+|+++..++.+..+  ++..|+++.-.|.+....++.+|.++..++++.
T Consensus        65 ~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~  142 (374)
T PLN03032         65 RQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTLP  142 (374)
T ss_pred             HHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCC
Confidence            4555555555555444  456676  9999999999988876642  456899999999999999999999988888754


Q ss_pred             CCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-----CeEEEccCCcccccC--CCCC
Q 022213          163 ERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR-----VMVVADEVYGHLTFG--SIPY  232 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~-----~~ii~D~~y~~~~~~--~~~~  232 (301)
                        +..+|+++|++.+.+   ++.+++++..+|+||.+-+   +++|+++|+++|     +++.+|.+|+.....  .. .
T Consensus       143 --~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-~  216 (374)
T PLN03032        143 --SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-A  216 (374)
T ss_pred             --CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC-C
Confidence              346999999999876   4567777889999999999   888888888986     589999999874321  11 0


Q ss_pred             CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +.+ .+....+ -+..|.+|.+++ -..+|.++..+
T Consensus       217 ~~~-~~~~~vD-Sis~s~HK~~g~-P~g~G~ll~r~  249 (374)
T PLN03032        217 PEV-TFRKPIG-SVSVSGHKFLGC-PMPCGVALTRK  249 (374)
T ss_pred             ccc-CCCcCCc-EEEECcccccCC-CcCeEEEEEEc
Confidence            111 1111112 455699998543 35588888754

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.49  E-value=2.8e-12  Score=106.70  Aligned_cols=205  Identities=16%  Similarity=0.157  Sum_probs=151.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--------NSGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      ..+.||++-=+-   . -..+++.++++.+--+.-....|..        ..-+..+.+.+++|+        ..|.+-+
T Consensus        14 ~r~~iNv~PiQr---G-GiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl--------g~D~~R~   81 (382)
T COG1103          14 TRGFINVNPIQR---G-GILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL--------GMDEVRV   81 (382)
T ss_pred             hcCccccChhhc---c-CcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh--------CCceeee
Confidence            356677643221   1 2345667777665433211222221        113567888899998        5678899


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-------CccEEE
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-------NTAAMV  185 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~  185 (301)
                      |+|+.++-+.++++++++||.|++....|......+++.|+++..+|......+.++++...+.+.+       .+.+.+
T Consensus        82 t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lal  161 (382)
T COG1103          82 TAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALAL  161 (382)
T ss_pred             cccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEE
Confidence            9999999999999999999999999999988788889999999999976666778888887776642       245667


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +++|...-|...+   .++++++|+++++.++...+|..    +.-+.+......+   ++++|-+|++ ++.-.+|.+.
T Consensus       162 lTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl~  230 (382)
T COG1103         162 LTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKEIGAD---FIVGSGHKSM-AASAPIGVLA  230 (382)
T ss_pred             EeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----ccccccccccCCC---EEEecCccch-hccCCeeEEe
Confidence            8888777777766   89999999999999999999987    3333444444444   8999999995 5566799988


Q ss_pred             eeC
Q 022213          266 TND  268 (301)
Q Consensus       266 ~~~  268 (301)
                      .+.
T Consensus       231 ~~e  233 (382)
T COG1103         231 MSE  233 (382)
T ss_pred             ehh
Confidence            754

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.49  E-value=3.1e-12  Score=117.98  Aligned_cols=244  Identities=15%  Similarity=0.083  Sum_probs=144.1

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|--... --..++.+.+++++++.....  +.......+.+..+++.+.+..+ .-..+.++++++
T Consensus        34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~S  109 (425)
T PRK07495         34 IWDKEGRRYIDFAAGIAVVN-TGHRHPRVIAAVKAQLDRFTH--TCHQVVPYENYVRLAERLNALVP-GDFAKKTIFVTT  109 (425)
T ss_pred             EEeCCCCEEEEccccHHhhc-cCCCCHHHHHHHHHHHhhccC--cccCccCCHHHHHHHHHHHHhCC-CCCCCEEEECCc
Confidence            34556889999987732111 123456788999998874221  11111223445556666655322 101258999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCCC----HHHHHh
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEVD----LDAVEA  175 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~~----~~~l~~  175 (301)
                      +++|.+.+++....  ...+|+...-+|++........ +.             .+..++..... .+.+    ++.+++
T Consensus       110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~  188 (425)
T PRK07495        110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDK  188 (425)
T ss_pred             hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHH
Confidence            99999999986642  3467888888888764322211 10             12233322111 1122    344566


Q ss_pred             hcc----cCccEEEEcCC--CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEe
Q 022213          176 LAD----KNTAAMVIINP--GNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLG  248 (301)
Q Consensus       176 ~~~----~~~~~v~l~~p--~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~  248 (301)
                      .+.    ....+.++..|  +| +| ..++.+.+++|.++|++||+++|+||+|..+...+. ......++   .+.-+.
T Consensus       189 ~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~g---v~pDi~  263 (425)
T PRK07495        189 LFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHE---VAADLT  263 (425)
T ss_pred             HHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccC---CCCCEE
Confidence            543    12234445555  44 77 457999999999999999999999999998765553 22222222   223456


Q ss_pred             cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      ++||.++ +|+++|+++++.        ++++.+..... ...+.+++++.
T Consensus       264 tlsK~l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~pl~~a  305 (425)
T PRK07495        264 TMAKGLA-GGFPLAAVTGRA--------EIMDAPGPGGLGGTYGGNPLGIA  305 (425)
T ss_pred             eehhhhc-CCccceEEEEcH--------HHHhccCCCCcCCCCCCCHHHHH
Confidence            8999975 899999999853        35555543221 22244555544

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.46  E-value=9.6e-12  Score=113.82  Aligned_cols=216  Identities=12%  Similarity=0.079  Sum_probs=140.6

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+++|..|.-..+-... .+.+.+++.+++..-.   +.......++...+++++.+.    ...+.++++++++
T Consensus        32 d~dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~---~~~~~~~~~~~~~la~~l~~~----~~~~~v~f~~SGs  103 (395)
T PRK03715         32 DHNGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLI---NPSPAFYNEPMAKLAGLLTQH----SCFDKVFFANSGA  103 (395)
T ss_pred             ECCCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhcc---cccccccCHHHHHHHHHHhhc----cCCCEEEEeCCcH
Confidence            3468899999876322111222 5788899988886422   111223467888899998652    1246899999999


Q ss_pred             HHHHHHHHHhcC------CC-CEEEEcCCCCcchHHHH-HhcCceEE---EeecCCCCCC----CCCHHHHHhhcccCcc
Q 022213          118 QAVEVILSVLAR------PG-ANVLLPRPGWPYYEGIA-QRKQVEVR---HFDLLPERNW----EVDLDAVEALADKNTA  182 (301)
Q Consensus       118 ~al~~~~~~l~~------~g-d~Vl~~~p~~~~~~~~~-~~~g~~~~---~~~~~~~~~~----~~~~~~l~~~~~~~~~  182 (301)
                      +|.+.+++....      +| .+|+..+.+|++..... ...+....   +.+..  .++    ..|++.+++.+.+++.
T Consensus       104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~a  181 (395)
T PRK03715        104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKTV  181 (395)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCce
Confidence            999999998852      23 67888888888753322 22222111   11111  111    1478889988876666


Q ss_pred             EEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          183 AMVIINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       183 ~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      ++++...++..|... +.+.+++|.++|++||+++|+||++..+...+..+ ....++-..++   .+++|.++ .|+.+
T Consensus       182 avi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~-a~~~~gv~PDi---~t~gK~lg-~G~p~  256 (395)
T PRK03715        182 AVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF-AYELSGIEPDI---MTLGKGIG-GGVPL  256 (395)
T ss_pred             EEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchh-hHhhcCCCCce---eeehhhhh-CCcce
Confidence            666655566667664 68999999999999999999999999864444322 11222222333   37799976 47889


Q ss_pred             EEEEeeC
Q 022213          262 GWLVTND  268 (301)
Q Consensus       262 G~~~~~~  268 (301)
                      |.++++.
T Consensus       257 ~av~~~~  263 (395)
T PRK03715        257 AALLAKA  263 (395)
T ss_pred             EEEEEcc
Confidence            9998754

>PRK15029 arginine decarboxylase; Provisional

Probab=99.45  E-value=3.5e-12  Score=123.29  Aligned_cols=169  Identities=12%  Similarity=0.078  Sum_probs=126.7

Q ss_pred             CCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           83 NSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        83 ~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      +.| +.+..+..|+.+.       .....++++|+|.++.+++.+++++||+|+++..+|-+....+...|+.++++...
T Consensus       203 p~G~I~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~  275 (755)
T PRK15029        203 HTGAFGESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPS  275 (755)
T ss_pred             CCcHHHHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence            344 4567777777762       23578899999999999999999999999999999999999999999999999643


Q ss_pred             CCCCC----CCC-----HHHHHhhcccC----------ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213          162 PERNW----EVD-----LDAVEALADKN----------TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY  222 (301)
Q Consensus       162 ~~~~~----~~~-----~~~l~~~~~~~----------~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y  222 (301)
                      . +.+    .++     ++.+++.+.+.          ++++++++|+. .|++.+   +++|+++|+++++.+++||+|
T Consensus       276 ~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAh  350 (755)
T PRK15029        276 R-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAW  350 (755)
T ss_pred             c-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECcc
Confidence            2 222    233     78888877432          23788888875 799999   899999999999999999999


Q ss_pred             cccc-cCCCCCCCcccc-----C-CCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          223 GHLT-FGSIPYTPMGLF-----G-SIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       223 ~~~~-~~~~~~~~~~~~-----~-~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      +... |.+ .++....+     . ....++++.|++|.  +|++.-|.++-
T Consensus       351 Gah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt--L~alTQaS~LH  398 (755)
T PRK15029        351 YGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL--LNALSQASYIH  398 (755)
T ss_pred             ccccccCc-cccccccccccccccCCCceEEEEchhhc--ccchhhhhhhe
Confidence            8643 432 23221222     1 22346999999998  56666666543

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.44  E-value=1.2e-11  Score=114.83  Aligned_cols=220  Identities=15%  Similarity=0.072  Sum_probs=131.5

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|--... --..++.+.+++.++++........  ....+....+++.+.+..+  -..+.++++++++
T Consensus        39 d~dG~~ylD~~~g~~~~~-lGh~~p~v~~a~~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~~--~~~~~v~f~~SGs  113 (433)
T PRK08117         39 GVDGKEYLDFTSGIAVAN-VGHRHPKVVQAIKEQADKLMHGPSG--VIYYESILKLAEELAEITP--GGLDCFFFSNSGA  113 (433)
T ss_pred             eCCCCEEEECCcchhhcc-CCCCCHHHHHHHHHHHHhccCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHH
Confidence            446888999988732111 1134578889999988742211111  1123445555555554321  1235899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCC--CCC--------CCHH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPER--NWE--------VDLD  171 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~--~~~--------~~~~  171 (301)
                      +|.+.+++....  ...+|+...-+|++........ +.             .+..+|.....  .+.        .+++
T Consensus       114 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (433)
T PRK08117        114 EAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLR  193 (433)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHH
Confidence            999999986432  2367888888888753322111 10             01222221100  000        1445


Q ss_pred             HHHhhccc----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          172 AVEALADK----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       172 ~l~~~~~~----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      .+++.++.    ...+.++.-| ....|.+ .+.+.+++|.++|++||+++|+||+|..+...+..+. ...++-..+  
T Consensus       194 ~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~-~~~~gv~pD--  270 (433)
T PRK08117        194 DLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA-AQTFGVVPD--  270 (433)
T ss_pred             HHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh-HhhcCCCCC--
Confidence            56665431    2334455555 5555665 5788999999999999999999999998766554221 122222222  


Q ss_pred             EEecCcccCCCCcceeEEEEee
Q 022213          246 TLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                       +.++||.++ +|+++|+++++
T Consensus       271 -i~t~sK~lg-~G~pigav~~~  290 (433)
T PRK08117        271 -IMTIAKGIA-SGLPLSAVVAS  290 (433)
T ss_pred             -Eeehhhhcc-CCCcceeEEEc
Confidence             359999987 89999999874

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.43  E-value=8.9e-12  Score=115.24  Aligned_cols=231  Identities=19%  Similarity=0.150  Sum_probs=140.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...++..++||..|.-... --..++.+.++++++++......+.  ....+.+..+++.+.+..+  ...+.++++++
T Consensus        36 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~~la~~l~~~~p--~~~~~v~f~~s  110 (423)
T PRK05964         36 LYLADGRELIDAISSWWVAT-HGHNHPYIDQAIREQLDRLDHVIFA--GFTHEPAERLAQRLVALTP--GGLDHVFFSDS  110 (423)
T ss_pred             EEeCCCCEEEEcchhHHhcc-CCCCCHHHHHHHHHHHhhCCCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            33456889999987732211 1224578889999988743211110  1123555667777755332  12368999999


Q ss_pred             HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCCCCCCHHHHH
Q 022213          116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +++|++.+++....       +| .+|+...-+|++.........-             ....++....+....+++.++
T Consensus       111 GseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~  190 (423)
T PRK05964        111 GSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALE  190 (423)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHH
Confidence            99999999987632       23 5799888889875433322111             112222211110011267777


Q ss_pred             hhccc--CccEEEEcCC--CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          175 ALADK--NTAAMVIINP--GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       175 ~~~~~--~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      +.+++  +..+.++..|  +...|... +.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++   +
T Consensus       191 ~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v~pDi~---~  266 (423)
T PRK05964        191 ALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVSPDIM---C  266 (423)
T ss_pred             HHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCCCCCee---e
Confidence            77743  2233444555  56677765 88999999999999999999999998775544221 222222223333   7


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ++|.++.+++++|+++++.        ++.+.+.
T Consensus       267 ~~K~l~gG~~p~~av~~~~--------~i~~~~~  292 (423)
T PRK05964        267 LSKGLTGGYLPLAATLCTA--------EIFEAFY  292 (423)
T ss_pred             eehhhhcCcccceEEEEcH--------HHHHhhh
Confidence            7999876668999988732        4666664

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.42  E-value=2e-11  Score=112.81  Aligned_cols=225  Identities=15%  Similarity=0.115  Sum_probs=133.8

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEE-cC
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYV-TL  114 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~-t~  114 (301)
                      ...+++.+||+..|--... --..++.+.+++++++...... .. .....+.+..+++.+.+........+ .+++ ++
T Consensus        34 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~~-~~-~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~  110 (425)
T PRK09264         34 YDEDGKEYIDFFAGAGALN-YGHNNPVLKQALIDYLQRDGIT-HG-LDMHTTAKREFLETFEETILKPRGLDYKVQFTGP  110 (425)
T ss_pred             EeCCCCEeeecccchhhcc-CCCCCHHHHHHHHHHHHhcccc-cc-cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence            3456888999988732211 1234578889999988742110 11 11123455556666544211111122 5656 58


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCCC-CCCHHHHHhhcc
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERNW-EVDLDAVEALAD  178 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~-~~~~~~l~~~~~  178 (301)
                      ++++|++.+++....  ...+|+...-+|++........ +.            .+..+|....... .-|++.+++.+.
T Consensus       111 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~  190 (425)
T PRK09264        111 TGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLE  190 (425)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHH
Confidence            999999999987753  2367888888888764322221 10            1233332110000 025677777774


Q ss_pred             c-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          179 K-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       179 ~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      +     ...+.++.-| ....|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++   ++|
T Consensus       191 ~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~~v~PDi~---t~~  266 (425)
T PRK09264        191 DSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERAGITPDIV---TLS  266 (425)
T ss_pred             hccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhcCCCCCEE---Eec
Confidence            2     1234445555 455665 5688999999999999999999999998765444221 222222233444   679


Q ss_pred             ccCCCCcceeEEEEeeC
Q 022213          252 KRWLVPGWRFGWLVTND  268 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~  268 (301)
                      |.++..|+++|++++++
T Consensus       267 K~l~~~G~pigav~~~~  283 (425)
T PRK09264        267 KSISGYGLPMALVLIKP  283 (425)
T ss_pred             cccCCCccceEEEEEch
Confidence            99876699999999864

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.42  E-value=4.2e-11  Score=110.70  Aligned_cols=201  Identities=17%  Similarity=0.136  Sum_probs=148.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC--------C
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP--------G  131 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~--------g  131 (301)
                      +++...+.+...+..+-. ......+..++.+.+.+++.+-++.. ..-.=.+|+|+|+++..++.+..+.        +
T Consensus        74 ~~~~a~~~~~~~~~~nl~-d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~  151 (460)
T COG0076          74 VPPVAAELLVSALNKNLG-DPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAES  151 (460)
T ss_pred             CHHHHHHHHHHHHhhcCC-CcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence            345666777666654321 11222256889999999998876644 3335689999999999888776421        1


Q ss_pred             C------EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE--EEEcCCCCCcccCCCHHHHH
Q 022213          132 A------NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA--MVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       132 d------~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--v~l~~p~nptG~~~~~~~l~  203 (301)
                      .      +|+++.-.|.++...+...|++...+++.+. ...+|++++++.+++.+..  |+.+.++.+||.+=+   ++
T Consensus       152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~  227 (460)
T COG0076         152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IE  227 (460)
T ss_pred             cccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HH
Confidence            1      6999999999999999999999999998775 6779999999999887665  777888999999877   99


Q ss_pred             HHHHHHHhCCCeEEEccCCccccc--CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          204 EIAEMARKLRVMVVADEVYGHLTF--GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~~--~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +|.++|+++++++.+|.+|+.+..  ..+...-...+ +....| ..+++|. +..=..+||++..++
T Consensus       228 ~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l-~~vdSI-t~d~HK~-g~aP~~~G~il~rd~  292 (460)
T COG0076         228 ELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGL-EGVDSI-TVDGHKY-GLAPIGCGVVLFRDE  292 (460)
T ss_pred             HHHHHHHHcCCcEEEEccccceeecccCccchhhcCC-CCceEE-EECcccc-cCCCCCceEEEEECH
Confidence            999999999999999999998764  22111100111 111224 3499998 777788999999775

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.42  E-value=2.4e-11  Score=113.23  Aligned_cols=216  Identities=10%  Similarity=0.030  Sum_probs=135.2

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---CCC---CHH----HHH
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---NSG---IPP----ARR   91 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~----lr~   91 (301)
                      ...+.+++..... .    ....|+|-..+.      .+++.+++++...+.+.-...|+.   ..|   ...    .|+
T Consensus        19 d~~~~~~~~~~~~-~----~~~~l~l~~sen------~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~   87 (452)
T PTZ00094         19 DPELYELIEKEKE-R----QIEGLELIASEN------FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQK   87 (452)
T ss_pred             CHHHHHHHHHHHH-H----HHcCeeEecccc------cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHH
Confidence            3455555543222 1    367799977763      345678888877765311001111   112   122    344


Q ss_pred             HHHHHHhhhCCCCCCCCCEEEc---CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh--------cC--ceEEEe
Q 022213           92 AIADYLSRDLPYKLSADDVYVT---LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR--------KQ--VEVRHF  158 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~~t---~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~--------~g--~~~~~~  158 (301)
                      .+++++      +.+++++.++   +|++++...++.+++++||+|++....|.+.......        .+  .++..+
T Consensus        88 ~~a~lf------~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~  161 (452)
T PTZ00094         88 RALEAF------GLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPY  161 (452)
T ss_pred             HHHHHh------CCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeec
Confidence            566666      3466677666   7899999999999999999999987777654322211        11  223334


Q ss_pred             ecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC-CCCcc
Q 022213          159 DLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-YTPMG  236 (301)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~-~~~~~  236 (301)
                      +++.  +..+|++++++.+++ +++.+++.  ++.+|...+   +++|.++|+++|+++++|++++.-...... ..++.
T Consensus       162 ~~~~--~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~  234 (452)
T PTZ00094        162 QVNE--KGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP  234 (452)
T ss_pred             ccCC--CCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC
Confidence            4433  356999999999854 56665543  345999999   778888899999999999999875443211 11211


Q ss_pred             ccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                           .--+++.|++|+++.|.  .|+++++.
T Consensus       235 -----~~D~l~~S~hK~l~GP~--Gg~l~~~~  259 (452)
T PTZ00094        235 -----YADVVTTTTHKSLRGPR--SGLIFYRK  259 (452)
T ss_pred             -----CCcEEEcCCccCCCCCC--ceEEEEec
Confidence                 11288999999865444  48877743

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.41  E-value=2.9e-12  Score=115.80  Aligned_cols=184  Identities=13%  Similarity=0.029  Sum_probs=122.0

Q ss_pred             CCChHHHHHHHHHHHhcC-C--CCCCCCC-------CCCHHHHHHHHHHHhhhCCCCC-CCCCEEEcCC-HHHHHHHHHH
Q 022213           58 FRTAVEAEDAIVDAVRSG-K--FNCYATN-------SGIPPARRAIADYLSRDLPYKL-SADDVYVTLG-CKQAVEVILS  125 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~--~~~Y~~~-------~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~g-~~~al~~~~~  125 (301)
                      -..|+.|.+++.+.+... .  ...|...       +-+.+.|+.+++++      +. ++++|++|+| +|++++.++.
T Consensus         8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~------~~~~~~~vvf~~gs~T~a~~~~~~   81 (355)
T cd00611           8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELL------NIPDNYKVLFLQGGATGQFAAVPL   81 (355)
T ss_pred             CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh------CCCCCceEEEEcCCchHHHHHHHH
Confidence            456789999998887421 0  1112221       11456778888887      33 4568999988 9999999999


Q ss_pred             HhcC---CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCC-HHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          126 VLAR---PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVD-LDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       126 ~l~~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      ++..   +||.|++ .+....+...++..|+++..++.+...++ .+ .+..+..++++++.|.+++..|.||..++   
T Consensus        82 ~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~---  156 (355)
T cd00611          82 NLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD---  156 (355)
T ss_pred             hcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc---
Confidence            9987   4555544 22222334467888999998887432222 13 23333445668899999999999999843   


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                           ++++.||+++++|.+.+.    +..+..+..++     +.+.|..|.+|-+|  +|.++++.
T Consensus       157 -----~i~~~~g~~~~VDa~qs~----g~~~idv~~~~-----~~~ss~~K~lGP~G--~g~l~~~~  207 (355)
T cd00611         157 -----EVPDTGGVPLVADMSSNI----LSRPIDVSKFG-----VIYAGAQKNLGPAG--VTVVIVRK  207 (355)
T ss_pred             -----eecccCCCeEEEEccccc----cCCCCCHHHhC-----EEEeecccccCCCc--eEEEEECH
Confidence                 334469999999999987    33334444332     46677899987666  77777754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK06541 hypothetical protein; Provisional

Probab=99.41  E-value=3e-11  Score=112.53  Aligned_cols=223  Identities=18%  Similarity=0.165  Sum_probs=135.8

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-.. +--..++.+.+++.++++....  +.......+.+..+|+.+.+..+  ...+.++++++
T Consensus        46 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~s  120 (460)
T PRK06541         46 IWDDRGKRYLDGLAGLFVV-QVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERLAALAP--GDLNRVFFTTG  120 (460)
T ss_pred             EEeCCCCEEEECCccHHhc-cCCCCCHHHHHHHHHHHhhCcC--ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEcCC
Confidence            3345688999998872111 1123457888999999874321  11111223455556666654222  12368999999


Q ss_pred             HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC---CCCCC--
Q 022213          116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER---NWEVD--  169 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~---~~~~~--  169 (301)
                      +++|.+.+++....       + ..+|+...-+|++........ +.            .+..++.....   .+..+  
T Consensus       121 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  200 (460)
T PRK06541        121 GSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPE  200 (460)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHH
Confidence            99999999986542       1 367888888888764332221 11            11222211100   01112  


Q ss_pred             ------HHHHHhhcc---cCccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          170 ------LDAVEALAD---KNTAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       170 ------~~~l~~~~~---~~~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                            ++.+++.+.   .+..+.++..| +++.|.+.+ .+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus       201 ~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~  279 (460)
T PRK06541        201 AFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERF  279 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhc
Confidence                  256666664   23456666777 888898765 8899999999999999999999997764333222 12223


Q ss_pred             CCCCCEEEEecCcccCCCCcc-eeEEEEeeC
Q 022213          239 GSIVPVITLGSISKRWLVPGW-RFGWLVTND  268 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~  268 (301)
                      +-..+++   ++||.++ .|+ ++|++++++
T Consensus       280 gv~PDiv---t~gK~l~-~G~~pigav~~~~  306 (460)
T PRK06541        280 GYVPDII---TCAKGIT-SGYSPLGAMIASD  306 (460)
T ss_pred             CCCCCEE---Eeccccc-CCccceeEEEEcH
Confidence            3233444   5899976 676 999999854

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.41  E-value=8.2e-12  Score=110.69  Aligned_cols=220  Identities=16%  Similarity=0.130  Sum_probs=146.3

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ++..+++.+|||..|--.. .--..+|.+.++++++.+.-..  -+. ....+.+.++++.|.+..+   ..+.|+++|+
T Consensus        36 v~D~~G~~YlDf~~Giav~-~lGH~hP~iv~al~~Q~~kl~h--~sn-~~~~~~~~~la~~L~~~s~---~~d~vff~NS  108 (404)
T COG4992          36 VWDQQGREYLDFAAGIAVN-NLGHCHPALVEALKEQAEKLWH--VSN-LFYNEPQAELAEKLVELSP---FADRVFFCNS  108 (404)
T ss_pred             EECCCCCEeeeeccceeee-ccCCCCHHHHHHHHHHHHHhhh--ccc-ccCChHHHHHHHHHHhhCc---cccEEEEcCC
Confidence            4455689999998883321 1234678899999988764211  111 1234566667777655211   3789999999


Q ss_pred             HHHHHHHHHHHhcCCC-----CEEEEcCCCCcchHHHHHhcCceEE----EeecCCCCCC--CCCHHHHHhhcccCccEE
Q 022213          116 CKQAVEVILSVLARPG-----ANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLPERNW--EVDLDAVEALADKNTAAM  184 (301)
Q Consensus       116 ~~~al~~~~~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~~~--~~~~~~l~~~~~~~~~~v  184 (301)
                      ++||++.++....+-+     -+|+...-+|++-.......+-+..    +-|+.+.-.+  --|++.++.++++++.+|
T Consensus       109 GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAv  188 (404)
T COG4992         109 GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAV  188 (404)
T ss_pred             cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEE
Confidence            9999999998875422     3788777777753222222221111    1122111000  148899999999988888


Q ss_pred             EEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          185 VIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       185 ~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      ++.-.+--.|+... .+.++++-++|++||+++|.||++..+..+++- .....++-.++++   ++.|.+| .|+.+|.
T Consensus       189 ivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~-fA~e~~gV~PDI~---tlaK~Lg-GG~PigA  263 (404)
T COG4992         189 IVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL-FAYEHYGVEPDIL---TLAKALG-GGFPIGA  263 (404)
T ss_pred             EEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchH-HHHHHhCCCCCEE---Eeecccc-CCcccee
Confidence            87766777887654 468899999999999999999999998777642 2333344444566   7799954 6799999


Q ss_pred             EEee
Q 022213          264 LVTN  267 (301)
Q Consensus       264 ~~~~  267 (301)
                      +++.
T Consensus       264 ~la~  267 (404)
T COG4992         264 MLAT  267 (404)
T ss_pred             eEEc
Confidence            9984

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.40  E-value=3.7e-11  Score=110.61  Aligned_cols=226  Identities=12%  Similarity=0.059  Sum_probs=134.5

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCC-CCCCEEE-c
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKL-SADDVYV-T  113 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~-t  113 (301)
                      +...+++.+||+..|.-... --..++.+.+++++++.....  ........+.+..+++.+.+...... ..+.+++ +
T Consensus        29 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~~--~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~  105 (412)
T TIGR02407        29 LWDEDGKEYIDFFAGAGALN-YGHNNPKLKQALIDYLADDGI--IHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPG  105 (412)
T ss_pred             EEeCCCCEEEEcccchhhcc-CCCCCHHHHHHHHHHHhhccc--eeccccCcHHHHHHHHHHHHhccCccCCCceEEEeC
Confidence            33456889999987732211 123457888999998863211  11111224555666666654211010 1125655 5


Q ss_pred             CCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC-CCCCHHHHHhhc
Q 022213          114 LGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN-WEVDLDAVEALA  177 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~-~~~~~~~l~~~~  177 (301)
                      +++++|.+.+++....  ...+|+...-+|++........ +.            .+..+|...... ..-+++.+++.+
T Consensus       106 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~  185 (412)
T TIGR02407       106 PTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLL  185 (412)
T ss_pred             CCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHH
Confidence            8999999999987753  3367998888998764333221 11            112222210000 002356677766


Q ss_pred             cc------CccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          178 DK------NTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       178 ~~------~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      .+      +..++++.-..++.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++   ++
T Consensus       186 ~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~~~~~v~PDi~---~~  261 (412)
T TIGR02407       186 EDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFF-SFEPAGIEPDIV---CL  261 (412)
T ss_pred             HhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhH-HhcccCCCCCEE---Ee
Confidence            42      2344554444778888 6789999999999999999999999998764443221 111222223334   67


Q ss_pred             cccCCCCcceeEEEEeeC
Q 022213          251 SKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~  268 (301)
                      ||.++..|+++|++++++
T Consensus       262 ~K~lg~~G~pigav~~~~  279 (412)
T TIGR02407       262 SKSISGYGLPLALTLIKP  279 (412)
T ss_pred             chhccCCccceeEEEEch
Confidence            899654399999999854

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.39  E-value=5.9e-11  Score=110.23  Aligned_cols=225  Identities=17%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCC-EEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~  114 (301)
                      +...+++.+||+..|.-... --..++.+.+++.+++........  .....+.+.++|+.+....+....... +++++
T Consensus        33 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~ai~~q~~~~~~~~~--~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~  109 (442)
T TIGR00709        33 VTDVEGKEYLDFLAGAGTLA-LGHNHPNMKQKILDYLQSGLPLHT--LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGP  109 (442)
T ss_pred             EEeCCCCEEEEccccHhhhc-CCCCCHHHHHHHHHHHHhccCccc--cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCC
Confidence            33456888999987732211 123457888999998874321111  011235666677777653321111134 45578


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC----CCH---
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE----VDL---  170 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----~~~---  170 (301)
                      ++++|.+.+++....  ...+|+...-+|++........ +.            .+..++......  +.    .+.   
T Consensus       110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (442)
T TIGR00709       110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNAS  189 (442)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence            999999999987653  2367888888998765443322 10            122222211000  00    011   


Q ss_pred             -HHHHhhcc------cCccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          171 -DAVEALAD------KNTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       171 -~~l~~~~~------~~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                       +.+++.+.      .+..++++... +|+.....+.+.+++|.++|++||+++|.||++..+.+.+. +.....++-..
T Consensus       190 ~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~P  268 (442)
T TIGR00709       190 IEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEP  268 (442)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCC
Confidence             12333332      23444555433 44444568999999999999999999999999999876653 33333344334


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeC
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++++   +||.++. |+++|+++++.
T Consensus       269 Div~---~gK~l~~-G~Pigav~~~~  290 (442)
T TIGR00709       269 DFVV---MSKAVGG-GLPLAVLLIAP  290 (442)
T ss_pred             cEEE---EcccccC-CcccEEEEEch
Confidence            4553   7999876 89999999843

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.39  E-value=3.8e-11  Score=119.03  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=134.5

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhc---CCCCCCCC----CCCCHHHHHHHHHHHhhhCCCCCCCC--CEEEc
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS---GKFNCYAT----NSGIPPARRAIADYLSRDLPYKLSAD--DVYVT  113 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t  113 (301)
                      .++.|+.+.-.    +..+..+.+++...+..   +....|..    ..-+.+.|+.+++|+      +++++  .|++|
T Consensus        34 ~~iYLD~Aatt----~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~l------ga~~~~~~VvFt  103 (805)
T PLN02724         34 GVVYLDHAGAT----LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF------NAPPSDYACVFT  103 (805)
T ss_pred             CCEeEeCCCCC----CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHh------CCCccceEEEEe
Confidence            36888887532    23345566655554432   11111211    112567888888888      44444  58999


Q ss_pred             CCHHHHHHHHHHHh-cCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCC------CCCCCH--HHHHhhc----
Q 022213          114 LGCKQAVEVILSVL-ARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPER------NWEVDL--DAVEALA----  177 (301)
Q Consensus       114 ~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~------~~~~~~--~~l~~~~----  177 (301)
                      +|+|+++++++.++ .++||+|++..-.|.+..   ..++..|+++..++++...      ...++.  +.+++.+    
T Consensus       104 snaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l  183 (805)
T PLN02724        104 SGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKL  183 (805)
T ss_pred             CChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhh
Confidence            99999999999998 578999999877777543   3345568999988875211      111222  5566543    


Q ss_pred             ------ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-----CCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213          178 ------DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL-----RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT  246 (301)
Q Consensus       178 ------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-----~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~  246 (301)
                            ..+++++.+++.+|-||.+++.+.++++.+.++++     ++++++|.+++.    +..+..+..++.+   ++
T Consensus       184 ~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~~~D---fl  256 (805)
T PLN02724        184 QKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRYPAD---FV  256 (805)
T ss_pred             ccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhcCCC---EE
Confidence                  13457899999999999999966544444433222     368999999876    3344455555444   88


Q ss_pred             EecCcccCCCCcceeEEEEeeC
Q 022213          247 LGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +.|+.|.+|.| ..+|.+++..
T Consensus       257 ~~S~HK~~GgP-~G~G~L~vr~  277 (805)
T PLN02724        257 VVSFYKIFGYP-TGLGALLVRR  277 (805)
T ss_pred             EEecceeccCC-CCceEEEEeh
Confidence            99999998744 2378887754

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.39  E-value=3e-12  Score=107.63  Aligned_cols=206  Identities=16%  Similarity=0.161  Sum_probs=143.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-----------CCCCHHHHHHHHHHHhhhCCCCCCCCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-----------NSGIPPARRAIADYLSRDLPYKLSADD  109 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~g~~~lr~~ia~~l~~~~~~~~~~~~  109 (301)
                      .+++++|..++.   -.+...|++.++-++++..     |+.           ..-+..|...||+|.        ..|+
T Consensus        66 ~k~ilnFcaNnY---LGLsshPeii~a~~~alee-----yGaGlssvrfIcGtq~iHk~LE~kiAqfh--------~rED  129 (417)
T KOG1359|consen   66 DKKILNFCANNY---LGLSSHPEIINAGQKALEE-----YGAGLSSVRFICGTQDIHKLLESKIAQFH--------GRED  129 (417)
T ss_pred             ccceeeeccccc---ccccCChHHHHHHHHHHHH-----hCCCccceeEEecchHHHHHHHHHHHHHh--------CCCc
Confidence            567899988874   3566778888888888873     322           112456677777776        4578


Q ss_pred             EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh----hcccCccEEE
Q 022213          110 VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA----LADKNTAAMV  185 (301)
Q Consensus       110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~v~  185 (301)
                      .++.+++..|...++.++..|.|-|+..+..+.+....++... +.          ..+|.-.++.    +.+.+-++|+
T Consensus       130 ~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLck-ry----------~h~dv~~l~~~l~~a~k~r~klv~  198 (417)
T KOG1359|consen  130 TILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK-RY----------RHVDVFDLEHCLISACKMRLKLVV  198 (417)
T ss_pred             eEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHh-hh----------ccchhHHHHHHHHHhhhheEEEEE
Confidence            8899999999999999999999999988888876654444332 11          1134444443    3333455555


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCC-CCcceeEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWL-VPGWRFGW  263 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~-~~G~rvG~  263 (301)
                      ....-...|.+.+   +++|.+++++||+++++||+++...++...--.-..+.-.++ .|..++++|.+| +.|   ||
T Consensus       199 TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gy  272 (417)
T KOG1359|consen  199 TDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GY  272 (417)
T ss_pred             ecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CC
Confidence            5566788999999   888889999999999999999988876432222222221222 378889999976 455   99


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhc
Q 022213          264 LVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      ..+|.+        +++.+++...
T Consensus       273 ttgp~~--------li~llrqr~R  288 (417)
T KOG1359|consen  273 TTGPKP--------LISLLRQRSR  288 (417)
T ss_pred             ccCChh--------HHHHHHhcCC
Confidence            998764        8888877654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.38  E-value=2.5e-11  Score=109.60  Aligned_cols=215  Identities=14%  Similarity=0.090  Sum_probs=136.3

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|--... .-..++.+.+++.+++++..  .+.+ ....+.+.++++.+.+..    ..+.++++++++
T Consensus        20 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~ql~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~SGs   91 (364)
T PRK04013         20 DSQGRRYLDLIAGIGVNV-LGHNHPEWVEEMSEQLEKLV--VAGP-MFEHEEKEEMLEELSKWV----NYEYVYMGNSGT   91 (364)
T ss_pred             ECCCCEEEEcccChhhcc-CCCCCHHHHHHHHHHHHhcC--CccC-CcCCHHHHHHHHHHHhhc----CCCEEEEeCchH
Confidence            456889999977732111 11244678899999887532  1111 112344444555554321    246899999999


Q ss_pred             HHHHHHHHHhcC-CC-CEEEEcCCCCcchHHHHHhc--------CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213          118 QAVEVILSVLAR-PG-ANVLLPRPGWPYYEGIAQRK--------QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII  187 (301)
Q Consensus       118 ~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  187 (301)
                      +|++.+++.... +| ++|+...-+|++........        +..+...++.. -.+ .|.+.+++.+++++.++++.
T Consensus        92 eA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~-~~~-~d~~~l~~~i~~~~aAvivE  169 (364)
T PRK04013         92 EAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKH-IPF-NDVEAAKEAITKETAAVIFE  169 (364)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEE-ecC-CCHHHHHHHhcCCcEEEEEc
Confidence            999999997753 45 89999999998764333221        11110000000 001 36788888887777777666


Q ss_pred             CCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          188 NPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       188 ~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ......|. ..+.+.++++.++|++||+++|+||++..+ ..+. ......++-..+++   +++|.++. |+.+|.++.
T Consensus       170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~gv~PDiv---~~gK~lgg-G~P~~a~~~  243 (364)
T PRK04013        170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPDIV---TMGKGIGN-GVPVSLTLT  243 (364)
T ss_pred             CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcCCCCCEE---EecccccC-CceeEEEEe
Confidence            55554555 456788999999999999999999999987 4443 22333344344555   56999764 799999987


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      +.
T Consensus       244 ~~  245 (364)
T PRK04013        244 NF  245 (364)
T ss_pred             cc
Confidence            43

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.37  E-value=3.9e-12  Score=107.18  Aligned_cols=202  Identities=17%  Similarity=0.234  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCC
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRP  139 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p  139 (301)
                      ..+++++|.++..+..  -|+.......|.+.+|+.+        ..|--++.+++|.+..++++.-| ++|..|++-+-
T Consensus        35 TdeMr~am~eA~vgDd--VyGeD~tt~rLE~~vA~l~--------GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~  104 (384)
T KOG1368|consen   35 TDEMRRAMAEASVGDD--VYGEDPTTNRLEQRVAELF--------GKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDR  104 (384)
T ss_pred             hHHHHHHHhhcccCcc--cccCCccHHHHHHHHHHHh--------CccceeeecccccccHHHHHHHhcCCCceEEeccc
Confidence            4678888888776555  4665556789999999998        34555666666777778888777 49999999988


Q ss_pred             CCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--------CccEEEEcCCCCCcc-cCCCHHHHHHHHH
Q 022213          140 GWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--------NTAAMVIINPGNPCG-NVFTYHHLQEIAE  207 (301)
Q Consensus       140 ~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~v~l~~p~nptG-~~~~~~~l~~i~~  207 (301)
                      +|...+   .+....|+.+..+.  ++++..+++++++.++..        .++++++.|-+|-+| .++|.+++.++.+
T Consensus       105 ~HI~~~E~gg~s~l~gv~~~tv~--~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~  182 (384)
T KOG1368|consen  105 AHIHRYEQGGISQLAGVHVRTVK--NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA  182 (384)
T ss_pred             hheeehhccChhhhccceeEeee--eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence            876322   23445566666654  445556999999998862        368899988876665 9999999999999


Q ss_pred             HHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       208 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +|++||+.+..|.+-.+..-- ..-.++..+....+.+.+ ++||.+|+|   ||.+++.+.       +++.+.+.++
T Consensus       183 lak~~glkLH~DGARi~NAav-asgV~vk~i~~~fDSVsi-CLSKglgAP---VGSViVG~k-------~FI~kA~~~R  249 (384)
T KOG1368|consen  183 LAKRHGLKLHMDGARIFNAAV-ASGVPVKKICSAFDSVSI-CLSKGLGAP---VGSVIVGSK-------DFIDKARHFR  249 (384)
T ss_pred             HHhccCCeeecchhhhhhHHH-HcCCCHHHHHHhhhhhhh-hhhccCCCC---cccEEEccH-------HHHHHHHHHH
Confidence            999999999999987653211 111233333222222322 899998877   899988664       3777666553

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.37  E-value=9e-12  Score=113.54  Aligned_cols=187  Identities=13%  Similarity=0.071  Sum_probs=122.6

Q ss_pred             eeeccCCCCCCCCCCCChHH-HHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCC-CCCCEEEcC-CHHH
Q 022213           44 VVPLGYGDPTAFPCFRTAVE-AEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKL-SADDVYVTL-GCKQ  118 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~-~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~-g~~~  118 (301)
                      .+.|+.|-      -.+++. +.+++.+.+-...  ...+  ..-+.+.|+.+++++      +. ++++|++++ ++|+
T Consensus        13 ~~~f~~Gp------~~~~~~~v~~a~~~~~~~~~--hr~~~f~~~~~~~r~~l~~l~------~~~~~~~v~~~~gs~T~   78 (378)
T PRK03080         13 DPRFSSGP------CKKRPGWQLEALADALLGRS--HRQKPVKALLKRVIEGTRELL------SLPEGYEVGIVPGSDTG   78 (378)
T ss_pred             CCCcCCCC------cCCChHHHHHHHHhhhcccC--cCCHHHHHHHHHHHHHHHHHh------CCCCCceEEEECCchHH
Confidence            45676662      233445 8888875543211  1111  112456667777776      33 345788775 8999


Q ss_pred             HHHHHHHHhcCC-CCEEEEcCCCCcc-hHH-HHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcc
Q 022213          119 AVEVILSVLARP-GANVLLPRPGWPY-YEG-IAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG  194 (301)
Q Consensus       119 al~~~~~~l~~~-gd~Vl~~~p~~~~-~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  194 (301)
                      +++.++.+++++ ++.|+. .-.|.. +.. ..+..|. ++..++..  .+..+|+++++    . ++.|.+++..|.||
T Consensus        79 ~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~----~-~~~V~~~h~~t~tG  150 (378)
T PRK03080         79 AWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVD----F-DRDVVFTWNGTTTG  150 (378)
T ss_pred             HHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcC----C-CCCEEEEecCCccc
Confidence            999999999874 445554 334443 333 2356788 88887753  33456766643    2 56688999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC-CcceeEEEEeeC
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTND  268 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~  268 (301)
                      ..++   +++|++  +++|+++++|.+.+...    .+..+..+  +   +++.|..|+++. +|  +|+++++.
T Consensus       151 ~~~p---i~~I~~--~~~g~~~vVDa~qs~G~----~pidv~~i--D---~~~~s~~K~l~~P~G--~g~l~v~~  209 (378)
T PRK03080        151 VRVP---VARWIG--ADREGLTICDATSAAFA----LPLDWSKL--D---VYTFSWQKVLGGEGG--HGMAILSP  209 (378)
T ss_pred             eecc---chhhcc--ccCCCeEEEeccccccc----CCCCHHHC--c---EEEEehhhhCCCCCc--eEEEEECH
Confidence            9999   777777  78899999999998733    33344432  1   889999999765 56  77777753

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.34  E-value=1.9e-10  Score=100.20  Aligned_cols=179  Identities=18%  Similarity=0.281  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCEEE-EcCCCCcchHHHH----------HhcCc
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGANVL-LPRPGWPYYEGIA----------QRKQV  153 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~~~----------~~~g~  153 (301)
                      .=|+.+-+.+.+.++    .|.-++   ..++|+||..++.++++|||+++ +.-.-|.....++          +..|+
T Consensus        54 ~GRd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi  129 (403)
T PF06838_consen   54 IGRDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI  129 (403)
T ss_dssp             HHHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-
T ss_pred             ccHHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc
Confidence            345555555555443    444444   45689999999999999999988 4555566554444          56788


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC-CCCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSI  230 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-p~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~  230 (301)
                      ....+++.++.  .+|++.+++.+++++|.+++.- ....+=..++.++++++++++++.  ++++++|+||++|+-..+
T Consensus       130 ~Y~~v~L~~dg--~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E  207 (403)
T PF06838_consen  130 KYREVPLTEDG--TIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE  207 (403)
T ss_dssp             EEEE--B-TTS--SB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-
T ss_pred             eeEEEeecCCC--CcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC
Confidence            89999986644  4999999999998899988863 344445568889999999998754  789999999999875432


Q ss_pred             CCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          231 PYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       +..+   +.+   ++.+|+-|+-|.. -.--||+++.        ++++++......
T Consensus       208 -P~~v---GAD---l~aGSLIKNpGGgiAptGGYIaGr--------~~lVe~~a~RLT  250 (403)
T PF06838_consen  208 -PTEV---GAD---LMAGSLIKNPGGGIAPTGGYIAGR--------KDLVERAAYRLT  250 (403)
T ss_dssp             -GGGG---T-S---EEEEETTSGGGTTT-SS-EEEEES--------HHHHHHHHHHHS
T ss_pred             -cccc---chh---heeccceeCCCCCccCcCCEEech--------HHHHHHHHhhhc
Confidence             2222   222   9999999996542 1123899983        468888876543

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.33  E-value=1.2e-10  Score=107.30  Aligned_cols=217  Identities=13%  Similarity=0.048  Sum_probs=136.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNC-YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ....|+|-..+.      .+++.+.+++...+.+.-     ..+ |+..+.+.++.....+..++-++  .+.-+|-.-+
T Consensus        48 q~~~l~LiasEN------~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~S  119 (493)
T PRK13580         48 QRSSLKLIASEN------YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHS  119 (493)
T ss_pred             HhcCceEecccc------cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCC
Confidence            366788866653      234677777776654311     112 33333455566555555555454  2333444444


Q ss_pred             CHHHHHHHHHHHhcCC-------------------------------CCEEEEcCCCCcchH-----HHHHhcCceEEEe
Q 022213          115 GCKQAVEVILSVLARP-------------------------------GANVLLPRPGWPYYE-----GIAQRKQVEVRHF  158 (301)
Q Consensus       115 g~~~al~~~~~~l~~~-------------------------------gd~Vl~~~p~~~~~~-----~~~~~~g~~~~~~  158 (301)
                       ++.|...++.++++|                               ||+|+-.++...++.     .-+.....+...+
T Consensus       120 -g~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y  198 (493)
T PRK13580        120 -GADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSY  198 (493)
T ss_pred             -cHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEec
Confidence             468888899999876                               899997766664331     1111112445555


Q ss_pred             ecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccc
Q 022213          159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGL  237 (301)
Q Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~  237 (301)
                      +++.+ ...+|.+++++.++++++.+++++.+|- |...+   +++|.++|+++|+++++|+++..-.+++..... ...
T Consensus       199 ~vd~~-~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~  273 (493)
T PRK13580        199 GVDPD-TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDP  273 (493)
T ss_pred             ccCcc-cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCC
Confidence            65533 3469999999999988888889988877 44777   888888899999999999999986664322110 000


Q ss_pred             cCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ..  .--|+++|++|++.  |-+.|+++++.        ++++.+.
T Consensus       274 ~~--~~D~vtgT~hKaL~--GP~GG~I~~~~--------~l~~~L~  307 (493)
T PRK13580        274 VP--HADIVTTTTHKTLR--GPRGGLVLAKK--------EYADAVD  307 (493)
T ss_pred             CC--CCcEEEeCChhhcc--CCCeEEEEecH--------HHHHHHh
Confidence            11  11288999999963  33458888743        3666664

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.32  E-value=2.2e-10  Score=106.45  Aligned_cols=229  Identities=13%  Similarity=0.086  Sum_probs=134.3

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|.-... --..++.+.+++.++++....  +.......+...++++.+.+..+ ....+.|+++++++
T Consensus        38 D~dG~~ylD~~~g~~~~~-lGH~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lae~L~~~~p-~~~~~~v~f~~SGs  113 (445)
T PRK08593         38 DVDGKTYIDLLASASSQN-VGHAPPRVVEAIKAQADKFIH--YTPAYMYHEPLVRLAKKLCELAP-GDFEKRVTFGLSGS  113 (445)
T ss_pred             eCCCCEEEECCccHHhhc-CCCCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHhCC-CCCCCEEEECCchH
Confidence            456888999977622111 112457888999998874321  21111223455556666655322 11125899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hcCc-------------eEEEeecCCCCC--CC-CC-------HH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RKQV-------------EVRHFDLLPERN--WE-VD-------LD  171 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~g~-------------~~~~~~~~~~~~--~~-~~-------~~  171 (301)
                      +|.+.+++....  ...+|+...-+|++...... ..+.             .+..++......  +. .+       ++
T Consensus       114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  193 (445)
T PRK08593        114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLA  193 (445)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHH
Confidence            999999986532  23578888888887543222 1110             122233211000  00 11       13


Q ss_pred             HHHhhcc-----cCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          172 AVEALAD-----KNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       172 ~l~~~~~-----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      .+++.+.     ++..++++.-.....|.+ .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+++
T Consensus       194 ~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a~~~~gv~pDi~  272 (445)
T PRK08593        194 PLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-SISHFNITPDLM  272 (445)
T ss_pred             HHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-HHHhcCCCCCEe
Confidence            3443332     233444444446666776 788999999999999999999999998765444321 112222223334


Q ss_pred             EEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          246 TLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                         +++|.++ .|+++|+++++.        ++++.+.
T Consensus       273 ---t~gK~l~-~G~p~gav~~~~--------~i~~~~~  298 (445)
T PRK08593        273 ---SFGKSLA-GGMPMSAIVGRK--------EIMESLE  298 (445)
T ss_pred             ---eeccccc-CCcccEEEEEcH--------HHHhhhc
Confidence               7899975 679999999843        4666654

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.31  E-value=5.8e-11  Score=103.82  Aligned_cols=213  Identities=19%  Similarity=0.220  Sum_probs=147.7

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCC-CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCY-ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +++--...+|.   -.+.-.+.+.+++.+.++...     ..+. +.....-.|.+++|++.+        .+..++.++
T Consensus       171 k~VtVWCSNDY---Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~aALlFsS  239 (570)
T KOG1360|consen  171 KKVTVWCSNDY---LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KEAALLFSS  239 (570)
T ss_pred             CceEEEecCcc---ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------Ccceeeeee
Confidence            45555555553   345667889999999987421     1111 122335689999999983        355666666


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCC
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINP  189 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p  189 (301)
                      +.-|.+..+..|.+  ||=.|...+-.+.+....++..+++-..+..       .|++.|++.+..    -+|+|.+.+.
T Consensus       240 CfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~svPKivAFEtV  312 (570)
T KOG1360|consen  240 CFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKSVPKIVAFETV  312 (570)
T ss_pred             eeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCCCCceEEEeee
Confidence            77777777777754  7766666666666666666666655433332       478888887743    4678888999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCE-EEEecCcccCCCCcceeEEEEee
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPV-ITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~v-i~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +..+|.+-+   +++|++++++||.+-.+||+++.-.|+.. -..+..-+. ..++ |+-+++.|+||+-|   ||+++.
T Consensus       313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~r-GaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat  385 (570)
T KOG1360|consen  313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPR-GAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAAT  385 (570)
T ss_pred             eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCC-CCCccccCCcchhhhhcccchhhhccccc---ceehhh
Confidence            999999999   99999999999999999999998777532 222222211 1122 88999999999998   999875


Q ss_pred             CCCCcccchhHHHHHHhhhc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~  287 (301)
                      .        .+++.+|.+..
T Consensus       386 ~--------~LvDmiRSyAa  397 (570)
T KOG1360|consen  386 R--------KLVDMIRSYAA  397 (570)
T ss_pred             h--------hHHHHHHHhcC
Confidence            4        48888888754

>PLN02880 tyrosine decarboxylase

Probab=99.30  E-value=3e-10  Score=106.47  Aligned_cols=198  Identities=11%  Similarity=0.047  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC-----C---
Q 022213           64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR-----P---  130 (301)
Q Consensus        64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~-----~---  130 (301)
                      +.+.+...+.. ....|....+..++++.+.+|+.+-+|.+-.     ...-++|+|+|++...++.+..+     .   
T Consensus        99 lad~l~~~~n~-~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~  177 (490)
T PLN02880         99 LGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKN  177 (490)
T ss_pred             HHHHHHHhhcc-CCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhccc
Confidence            34444444432 2334555556789999999999887764321     12467899999998777765532     1   


Q ss_pred             --CC-EEEEcCCCCcchHHHHHhcCce---EEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCC
Q 022213          131 --GA-NVLLPRPGWPYYEGIAQRKQVE---VRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       131 --gd-~Vl~~~p~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~  198 (301)
                        .. .|++.+-+|.+....+..+|+.   ++.++.+...++.+|++.|++.+.+      .+.+|+.+-.+..||.+-+
T Consensus       178 ~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp  257 (490)
T PLN02880        178 ALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP  257 (490)
T ss_pred             ccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc
Confidence              12 4556778899999999999985   6778876555678999999998853      1344555666889999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         +++|+++|++||+|+.+|.+|+.+...-+.. ..+..+.. . --+..+++|. +.....+|.+++.+
T Consensus       258 ---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~-a-DSit~d~HKw-l~~P~~~g~llvr~  322 (490)
T PLN02880        258 ---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEE-A-DSFNMNAHKW-FLTNFDCSLLWVKD  322 (490)
T ss_pred             ---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchh-c-CEEEECchhh-cCCCccEEEEEEeC
Confidence               8999999999999999999999865321111 01111111 1 1556699999 46667899998865

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.30  E-value=1.3e-10  Score=104.57  Aligned_cols=186  Identities=13%  Similarity=0.019  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHHHHhc---CCCCCCCCCCCCH---HHHHHHHHHHhhhCCCCCCCCCEEEcCC-HHHHHHHHHHHhcCCCC
Q 022213           60 TAVEAEDAIVDAVRS---GKFNCYATNSGIP---PARRAIADYLSRDLPYKLSADDVYVTLG-CKQAVEVILSVLARPGA  132 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~i~~t~g-~~~al~~~~~~l~~~gd  132 (301)
                      .|..+.+++.+.+..   .....|......+   ++.+.+.+.+++.++. -+..+|++++| +|.++++++.+++.+||
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~-~~~~~v~~~~gsgT~a~ea~~~nl~~~~~   81 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNI-PDNYEVLFLQGGATGQFAAVPLNLLAEGK   81 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCC-CCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence            467888888888763   1122333222223   3333333444333342 12346877766 99999999999999999


Q ss_pred             EEEEcCCCCcc--hHHHHHhcCceEEEeecCCC--CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHH
Q 022213          133 NVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPE--RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM  208 (301)
Q Consensus       133 ~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~  208 (301)
                      ++++..-+..+  +...++..|+ +..+.....  .+..+++++++  ++++++.|++++..+.||+..+        ++
T Consensus        82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l  150 (349)
T TIGR01364        82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL  150 (349)
T ss_pred             eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence            99877766654  4677788888 666665322  22245666555  3457889999999999999875        55


Q ss_pred             HHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       209 ~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++.+++++++|.+.+.    +..+..+..++     +++.|..|.+|.||  +|.++++.
T Consensus       151 ~~~~~~l~iVDavss~----g~~~id~~~~d-----~~~~ssqK~lgP~G--lg~l~~s~  199 (349)
T TIGR01364       151 PDVKNAPLVADMSSNI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTVVIVRK  199 (349)
T ss_pred             cccCCCeEEEEccccc----cCccCCHHHcc-----EEEEecccccCCCc--eEEEEECH
Confidence            6678999999999986    33344444432     88999999998676  78887754

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.30  E-value=3.6e-10  Score=102.97  Aligned_cols=222  Identities=14%  Similarity=0.083  Sum_probs=140.9

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+++.+|||..|..... --..+|.+.+++++++..-....+...  ..+...++|+.|...... ...+.+++++++
T Consensus        51 ~DvdG~~ylDf~sgi~v~~-~GH~hP~Vv~Av~~q~~~~~h~~~~~~--~~e~~v~~ae~L~~~~p~-~~~~~~~f~~sG  126 (447)
T COG0160          51 YDVDGNEYLDFLSGIAVLN-LGHNHPRVVEAVKRQLAKLNHTHTRDL--YYEPYVELAEKLTALAPG-SGLKKVFFGNSG  126 (447)
T ss_pred             EeCCCCEEEEcccCcchhc-cCCCCHHHHHHHHHHHHHhhcccCCcc--cchhHHHHHHHHHHhCCc-ccCCeEEecCCc
Confidence            3456889999999633221 124568899999998875331122221  124555555555442221 145679999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHH-HhcC-------------ceEEEeecCCC--CCCC--------CCH
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIA-QRKQ-------------VEVRHFDLLPE--RNWE--------VDL  170 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~-~~~g-------------~~~~~~~~~~~--~~~~--------~~~  170 (301)
                      ++|.+.+++....  ....|+...-+|++..... ...+             -.+..+|....  ..+.        ...
T Consensus       127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~  206 (447)
T COG0160         127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL  206 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence            9999999987752  3467888888887532222 1111             11344443221  1111        123


Q ss_pred             HHHHhhccc-----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          171 DAVEALADK-----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       171 ~~l~~~~~~-----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +.++..+..     ...+.++.-| +...|.. .+.+.++++.++|++||+++|+||++..+..++ ....+..++-..+
T Consensus       207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PD  285 (447)
T COG0160         207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPD  285 (447)
T ss_pred             HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-cchhhhhcCCCCC
Confidence            334443321     2234444445 6667764 455788999999999999999999999998887 6667776665566


Q ss_pred             EEEEecCcccCCCCcceeEEEEee
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +|   ++||.++. |+.+|.++..
T Consensus       286 iv---t~aK~ig~-G~Pl~avv~r  305 (447)
T COG0160         286 IV---TLAKSLGG-GLPLSAVVGR  305 (447)
T ss_pred             EE---EecccccC-CCceeEEecc
Confidence            77   78999776 9999999974

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.30  E-value=3.8e-10  Score=104.69  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=131.8

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-... --...+.+.+++.++++....  +.......+....+|+.+.+..+. -..+.++++++++
T Consensus        50 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p~-~~~~~v~f~~SGs  125 (441)
T PRK05769         50 DVDGNVYLDFNAGIAVTN-VGHAHPKVVKAVKEQAEKFLH--YSLTDFYYEPAVELAERLVEIAPG-GFEKKVFFTNSGT  125 (441)
T ss_pred             eCCCCEEEECCCchhhcc-cCCCCHHHHHHHHHHHHhccC--ccCcccCCHHHHHHHHHHHHhCCC-CCCCEEEECCchH
Confidence            446788899987732211 122456788999998874321  111111235566677777553221 1136899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCC--CC-C--------CH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERN--WE-V--------DL  170 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~-~--------~~  170 (301)
                      +|.+.+++....  ...+|+...-+|++........ +.             .+..++......  +. -        ..
T Consensus       126 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (441)
T PRK05769        126 ESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVL  205 (441)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHH
Confidence            999999986642  3467888888888764333221 11             112222210000  00 0        12


Q ss_pred             HHHHh-hcc----cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          171 DAVEA-LAD----KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       171 ~~l~~-~~~----~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +.+++ .++    ....+.++.-| ....|.. .+.+.+++|.++|++||+++|.||++..+...+..+ ....++-..+
T Consensus       206 ~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pD  284 (441)
T PRK05769        206 DFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPD  284 (441)
T ss_pred             HHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCC
Confidence            33554 222    22334455555 4455664 457889999999999999999999999865544322 2223332334


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++   ++||.++ .|+++|+++++.
T Consensus       285 iv---t~~K~l~-~G~p~gav~~~~  305 (441)
T PRK05769        285 II---TLAKAIA-GGLPLGAVIGRA  305 (441)
T ss_pred             EE---EEccccc-CCcccEEEEEeh
Confidence            44   5799977 689999998854

>PLN02590 probable tyrosine decarboxylase

Probab=99.28  E-value=8.9e-10  Score=103.68  Aligned_cols=199  Identities=12%  Similarity=0.048  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC---------
Q 022213           64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR---------  129 (301)
Q Consensus        64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~---------  129 (301)
                      +-+.+...+.. ....|....+..++++.+.+|+.+.++.+-.     ...=++++|+|++...++.+..+         
T Consensus       147 lgd~l~sa~n~-~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~  225 (539)
T PLN02590        147 LGEMLNAGLSV-VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT  225 (539)
T ss_pred             HHHHHHHhccc-ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhccc
Confidence            34444444432 2335666667889999999999987764421     12357789999998777665432         


Q ss_pred             --CCCEEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCC
Q 022213          130 --PGANVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       130 --~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~  198 (301)
                        +.-.|++.+.+|.+....+..+|+   .++.++++..+++.+|++.|++.+.+      .+..|+.+-.+..||.+=+
T Consensus       226 ~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp  305 (539)
T PLN02590        226 LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP  305 (539)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence              111455677789999899999998   47778876555678999999998854      2344555666788999877


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                         +++|+++|++||+|+.+|.+|+.+..--+... .+..+ +..+-| ..+++|. +....-+|.+++.++
T Consensus       306 ---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gi-e~ADSi-t~D~HK~-l~~p~~cg~llvr~~  371 (539)
T PLN02590        306 ---LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGI-ENADSF-NMNAHKW-LFANQTCSPLWVKDR  371 (539)
T ss_pred             ---HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCC-ccCCEE-EECchhh-cCcCcCEEEEEecCH
Confidence               89999999999999999999998663211111 11111 111223 4489999 556677898888664

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.28  E-value=7e-11  Score=113.38  Aligned_cols=173  Identities=13%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-HHhcCceEE
Q 022213           79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI-AQRKQVEVR  156 (301)
Q Consensus        79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~  156 (301)
                      +.-.+.| +.+..+..|+.++       .....++++|+|.++.+++++++.+||+|+++..+|-+.... +...|+.++
T Consensus       168 dL~~~eG~i~eAq~~AA~~fg-------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PV  240 (720)
T PRK13578        168 DLLIHEGAAKDAQKHAAKVFN-------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV  240 (720)
T ss_pred             CCCCCChHHHHHHHHHHHHhC-------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEE
Confidence            3333344 4567777777762       235688999999999999999999999999999999988774 888999999


Q ss_pred             EeecCCCCCCC----CCH-----HHHHhhcccC----------ccEEEEcCCCCCcccCCCHHHHHHHHHH-HHhCCCeE
Q 022213          157 HFDLLPERNWE----VDL-----DAVEALADKN----------TAAMVIINPGNPCGNVFTYHHLQEIAEM-ARKLRVMV  216 (301)
Q Consensus       157 ~~~~~~~~~~~----~~~-----~~l~~~~~~~----------~~~v~l~~p~nptG~~~~~~~l~~i~~~-~~~~~~~i  216 (301)
                      ++.... +.++    ++.     +.+++.+.+.          .+++++++|+. .|++++   +++|+++ ++.++ .|
T Consensus       241 Yl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~l  314 (720)
T PRK13578        241 YLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YI  314 (720)
T ss_pred             Eeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cE
Confidence            987543 2232    344     4477766543          37788888874 799999   7888887 57777 99


Q ss_pred             EEccCCcccc-cCCC--CCCCc-cccCCC-CCEEEEecCcccCCCCcceeEEEEe
Q 022213          217 VADEVYGHLT-FGSI--PYTPM-GLFGSI-VPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       217 i~D~~y~~~~-~~~~--~~~~~-~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||+|..+. |.+.  .++++ ...+.+ .-++++.|.+|.  ++++--+.++-
T Consensus       315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt--L~alTQaS~LH  367 (720)
T PRK13578        315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ--QAGFSQTSQIH  367 (720)
T ss_pred             EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc--chhhhhHhhhh
Confidence            9999998653 3321  12212 122222 347999999998  56666666553

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.27  E-value=2.4e-10  Score=97.06  Aligned_cols=150  Identities=19%  Similarity=0.195  Sum_probs=112.0

Q ss_pred             CCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCc--chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-Ccc
Q 022213          106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP--YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTA  182 (301)
Q Consensus       106 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  182 (301)
                      ++...++..+++.+++.++..+++|||+|++..-+-.  .+....+++|+++..++.+  .+....++++.+.+++ +++
T Consensus        67 n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~  144 (385)
T KOG2862|consen   67 NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPK  144 (385)
T ss_pred             CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCc
Confidence            3446777788899999999999999999997655443  3467788999999998664  3556899999998876 678


Q ss_pred             EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-ccee
Q 022213          183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRF  261 (301)
Q Consensus       183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rv  261 (301)
                      ++++++-...||+..+.  +..+.++|++|+.++++|.+-+-    +...-.++.+.-+   +...+.-|++++| |+-+
T Consensus       145 ~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaSl----ggt~F~mDewgVD---vaytgSQKaL~aP~GLsi  215 (385)
T KOG2862|consen  145 AVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVASL----GGTEFEMDEWGVD---VAYTGSQKALGAPAGLSI  215 (385)
T ss_pred             eEEEEecCccccccchH--HHHHHHHhhcCCeEEEEechhhc----CCccceehhhccc---EEEecchhhcCCCCCcce
Confidence            99999999999999882  34445678899999999999874    2222234444333   7777889998885 6433


Q ss_pred             EEEEeeC
Q 022213          262 GWLVTND  268 (301)
Q Consensus       262 G~~~~~~  268 (301)
                        +..++
T Consensus       216 --isfS~  220 (385)
T KOG2862|consen  216 --ISFSD  220 (385)
T ss_pred             --eecCH
Confidence              55443

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.23  E-value=1.6e-09  Score=101.14  Aligned_cols=221  Identities=12%  Similarity=0.050  Sum_probs=126.3

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCC-CCCCCCHHHHHHHHH
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCY-ATNSGIPPARRAIAD   95 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y-~~~~g~~~lr~~ia~   95 (301)
                      ...|.++++.....     ....|+|-..+.      .+.+.+.+++...+.+.-     ..+| +-...+.++.+...+
T Consensus        19 d~~~~~~i~~e~~~-----q~~~l~liasen------~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~   87 (475)
T PLN03226         19 DPEIADIIEKEKRR-----QWKGLELIASEN------FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQK   87 (475)
T ss_pred             CHHHHHHHHHHHHH-----HHcCeeEecCCc------cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHH
Confidence            45566665533321     356788866653      345678888888773211     1122 111223333331112


Q ss_pred             HHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCEEEEcCC---CCcchHHHHH-----hcCceEE--EeecCC
Q 022213           96 YLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGANVLLPRP---GWPYYEGIAQ-----RKQVEVR--HFDLLP  162 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~Vl~~~p---~~~~~~~~~~-----~~g~~~~--~~~~~~  162 (301)
                      ...+.++  ...+.+.+   .++++.|...++.++++|||+|+..+.   +|........     ..+....  .+.+++
T Consensus        88 ~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~  165 (475)
T PLN03226         88 RALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE  165 (475)
T ss_pred             HHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC
Confidence            2222222  23334433   477889999999999999999998543   3332221111     1111111  233333


Q ss_pred             CCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCC
Q 022213          163 ERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGS  240 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~  240 (301)
                       ++..+|++++++.+.+ +++.++ +..++ +|...+   +++|.++|+++|+++++|+++..-..... ...++..   
T Consensus       166 -~~g~iD~d~Le~~l~~~~pklIv-~~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~---  236 (475)
T PLN03226        166 -STGLIDYDKLEKKAMLFRPKLII-AGASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEY---  236 (475)
T ss_pred             -CCCCcCHHHHHHHHhhcCCeEEE-EecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCC---
Confidence             3456899999998864 566544 33333 778888   77888889999999999999987554322 1122221   


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                        --++++|++|+++  |-+-|+++++.
T Consensus       237 --~Div~~t~hK~L~--GP~Gg~I~~~~  260 (475)
T PLN03226        237 --CDVVTTTTHKSLR--GPRGGMIFFRK  260 (475)
T ss_pred             --CeEEEecCccccc--CCCceEEEEch
Confidence              1188999999963  33338887743

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.22  E-value=2e-09  Score=101.33  Aligned_cols=184  Identities=19%  Similarity=0.187  Sum_probs=126.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCC-C---------C-CCCCEEEcCCHHHHHHHHHHHhcC-----------------
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPY-K---------L-SADDVYVTLGCKQAVEVILSVLAR-----------------  129 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~-~---------~-~~~~i~~t~g~~~al~~~~~~l~~-----------------  129 (301)
                      ..|.......++.+.+.+|+.+..+. .         . +...-++|+|+|+|...++.+..+                 
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            35555567789999999999875421 0         1 112357799999998777665422                 


Q ss_pred             ---------CCCEEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEc--CCCC
Q 022213          130 ---------PGANVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVII--NPGN  191 (301)
Q Consensus       130 ---------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~--~p~n  191 (301)
                               ++..|++.+-.|.+....++..|+   +++.++++.  ++.+|++.|++.++    ++++.++++  ..++
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt  276 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT  276 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence                     124688888999999888888888   688888754  45699999999885    344444444  4577


Q ss_pred             CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .||.+-+   +++|+++|+++|+++++|.+|+....-.... ..+..+.. .+ .+..+.+|.++.| ..+|.+++.++
T Consensus       277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~-aD-Sit~d~HK~l~~P-~g~G~llvr~~  349 (522)
T TIGR03799       277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER-AD-SVTIDAHKQLYVP-MGAGMVLFKDP  349 (522)
T ss_pred             CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchh-CC-EEEEChhhcCCcC-cccEEEEEeCH
Confidence            9999999   8999999999999999999998643211100 00111111 11 5667999985544 56898888653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.21  E-value=9.3e-10  Score=99.55  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=122.1

Q ss_pred             CCChHHHHHHHHHHHhcC---CCCCCCCCCC-------CHHHHHHHHHHHhhhCCCCCCCCCE-EEcCCHHHHHHHHHHH
Q 022213           58 FRTAVEAEDAIVDAVRSG---KFNCYATNSG-------IPPARRAIADYLSRDLPYKLSADDV-YVTLGCKQAVEVILSV  126 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g-------~~~lr~~ia~~l~~~~~~~~~~~~i-~~t~g~~~al~~~~~~  126 (301)
                      -..|+.+++++.+.+.+.   ....+.....       +.+.++.+++++    +.. +..+| +++++++.+++.++..
T Consensus        12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~----~~~-~~~~v~~~~gsgt~~~Ea~~~n   86 (360)
T PRK05355         12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELL----NIP-DNYKVLFLQGGASLQFAMVPMN   86 (360)
T ss_pred             CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEEcCCchHHHHHHHHh
Confidence            356789999998876421   1111211111       234444445544    321 22345 5557788999999999


Q ss_pred             hcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHh-hcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213          127 LARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA-LADKNTAAMVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       127 l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~~~~l~  203 (301)
                      ++.+||++++..-+..+  +...++..|.. ..+...+..+. .+..++++ .++++++.|.+++..+.||+..+  .+.
T Consensus        87 l~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~  162 (360)
T PRK05355         87 LLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELP  162 (360)
T ss_pred             cCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--ccc
Confidence            99999999877666654  45677788865 55554332333 33334444 67778899999999999999984  255


Q ss_pred             HHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       204 ~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|      +|+++|+|.+.+.    +..+..+..++     +++.|..|.+|-||  +|.++++.
T Consensus       163 ~i------~g~l~vVDavss~----g~~~idv~~~d-----~~~~ssqK~lgP~G--lg~l~~s~  210 (360)
T PRK05355        163 DT------GDVPLVADMSSDI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTIVIVRE  210 (360)
T ss_pred             cc------CCCcEEEEcCccc----cCccCCHHHcc-----EEEEeccccccCCc--eEEEEECH
Confidence            55      7999999999987    33444454442     88999999988565  78887755

>PLN02271 serine hydroxymethyltransferase

Probab=99.21  E-value=2.8e-09  Score=99.09  Aligned_cols=206  Identities=13%  Similarity=0.071  Sum_probs=130.3

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC-----C-CCCCCCCHHHHHHHHHHHhhhCCCCCC-C-CCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN-----C-YATNSGIPPARRAIADYLSRDLPYKLS-A-DDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~-----~-Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-~~i~~t  113 (301)
                      ..-|+|=..+.      .+.+.+.+++...+.+.-..     + |+-.+.+.++.....+...+.++.+.. . -||-.-
T Consensus       148 ~~~l~LIASEN------~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~  221 (586)
T PLN02271        148 FKGIELIASEN------FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY  221 (586)
T ss_pred             hcCeeeccccc------cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec
Confidence            56677755542      24467777776665432111     1 222223345544444444443442211 1 344444


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH---------HHhcCceEEEee--cCCCCCCCCCHHHHHh-hcccCc
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---------AQRKQVEVRHFD--LLPERNWEVDLDAVEA-LADKNT  181 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~---------~~~~g~~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~  181 (301)
                       +++.|...++.++++|||+|+..+..+.++...         +...|..+..++  +++ ....+|.+++++ +...++
T Consensus       222 -SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~rP  299 (586)
T PLN02271        222 -SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEKALDFRP  299 (586)
T ss_pred             -cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHHhhhcCC
Confidence             678999999999999999999988777754321         234565555554  433 344699999998 556689


Q ss_pred             cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      ++|++..-.+|  ..++   ++++.++|+++|+++++|.++..-.... ..+.++..  -   -++.+|++|++  .|-|
T Consensus       300 KLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~--a---Dvvt~TTHKtL--rGPr  367 (586)
T PLN02271        300 KILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY--C---DIVTSTTHKSL--RGPR  367 (586)
T ss_pred             eEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcC--C---cEEEeCCcccC--CCCC
Confidence            98888777777  5677   7777888889999999999998644432 22222221  1   18899999995  5556


Q ss_pred             eEEEEee
Q 022213          261 FGWLVTN  267 (301)
Q Consensus       261 vG~~~~~  267 (301)
                      -|.++..
T Consensus       368 GG~I~~r  374 (586)
T PLN02271        368 GGIIFYR  374 (586)
T ss_pred             ceEEEec
Confidence            6888764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.20  E-value=2.1e-09  Score=100.22  Aligned_cols=223  Identities=15%  Similarity=0.122  Sum_probs=137.8

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|--... .-..++.+.+++.++++...  .|..   ..+.+..+|+.+.+..+   ..+.+.++++++
T Consensus        95 D~dG~~yiD~~~g~g~~~-lGh~~p~v~~av~~ql~~~~--~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGs  165 (474)
T PLN02482         95 DVDGNEYIDYVGSWGPAI-IGHADDEVLAALAETMKKGT--SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGT  165 (474)
T ss_pred             ECCCCEEEEecccccccc-cCCCCHHHHHHHHHHHhhCC--CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChH
Confidence            446888899877632111 12345788999999987543  2322   23566677777766432   247999999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hc--CceEE------EeecCC-CCC---CCCCHHHHHhhccc--C
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RK--QVEVR------HFDLLP-ERN---WEVDLDAVEALADK--N  180 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~--g~~~~------~~~~~~-~~~---~~~~~~~l~~~~~~--~  180 (301)
                      ||.+.+++....  ..++|+...-+|+++...+. ..  +....      .++... .+.   .-.|++.+++.+..  .
T Consensus       166 EA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~  245 (474)
T PLN02482        166 EACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKG  245 (474)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCC
Confidence            999999987753  23688888888988642211 10  00000      000000 000   00267888887753  2


Q ss_pred             ccEEEEcCC-CCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..+.++..| ....|.+.+ .+.+++|.++|++||+++|+||+...+ ..+.. .....++-..+++   +++|.++ .|
T Consensus       246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~-ga~~~~gv~PDi~---t~gK~lg-gG  319 (474)
T PLN02482        246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG-GAQEYFGITPDLT---TLGKVIG-GG  319 (474)
T ss_pred             ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc-hHhHHhCCCCCEE---Eecchhh-CC
Confidence            334455555 455676554 688999999999999999999999876 33321 1122233233443   7899965 68


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHH
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +.+|.++++.        ++++.+.
T Consensus       320 ~Pigav~g~~--------ei~~~~~  336 (474)
T PLN02482        320 LPVGAYGGRR--------EIMEMVA  336 (474)
T ss_pred             CceEEEEEcH--------HHHHhhc
Confidence            9999997632        4666664

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.19  E-value=1.6e-09  Score=100.24  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=131.5

Q ss_pred             cccCCCCCeeeccCC--CCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           36 VNKNDPRPVVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g--~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      ++..+++.++|+..|  ...   --..++.+.+++.+++..... ..|    ...+.+..+|+.+.+..+  ...+.+++
T Consensus        69 l~D~dG~~ylD~~~g~~~~~---lGh~hp~v~~Av~~ql~~l~~~~~~----~~~~~~~~lAe~L~~~~p--~~~~~v~f  139 (442)
T TIGR03372        69 LIDTQGNEFIDCLGGFGIFN---VGHRNPNVIAAVENQLAKQPLHSQE----LLDPLRALLAKTLAALTP--GKLKYSFF  139 (442)
T ss_pred             EEECCCCEEEECCccHHhhh---cCCCCHHHHHHHHHHHHhCCCcccc----cCCHHHHHHHHHHHHhCC--CCcCEEEE
Confidence            334568889999777  321   123457888999998874321 112    224455566666654322  12257999


Q ss_pred             cCCHHHHHHHHHHHhcC----CC-CEEEEcCCCCcchHHHHHhcCceEE----EeecCCCCC--CCCCHHHHHhhccc--
Q 022213          113 TLGCKQAVEVILSVLAR----PG-ANVLLPRPGWPYYEGIAQRKQVEVR----HFDLLPERN--WEVDLDAVEALADK--  179 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~----~g-d~Vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~~--~~~~~~~l~~~~~~--  179 (301)
                      +++++||.+.+++....    .| .+|+...-+|++.............    +.++.+.-.  --.|.+.+++.++.  
T Consensus       140 ~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~  219 (442)
T TIGR03372       140 CNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECK  219 (442)
T ss_pred             eCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHh
Confidence            99999999999986642    23 6789889889876433332211100    111111000  01356666665531  


Q ss_pred             ---CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC
Q 022213          180 ---NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       180 ---~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  254 (301)
                         ...+.++.-| ....|... +.+.++++.++|++||+++|.||++..+...+. ......++-..+++   +++|.+
T Consensus       220 ~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDiv---t~gK~l  295 (442)
T TIGR03372       220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGVQPDIL---CLAKAL  295 (442)
T ss_pred             cCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCCCCCee---eehhhh
Confidence               2234445555 44556655 678899999999999999999999987644443 22333333333444   589996


Q ss_pred             CCCc-ceeEEEEee
Q 022213          255 LVPG-WRFGWLVTN  267 (301)
Q Consensus       255 ~~~G-~rvG~~~~~  267 (301)
                      + .| +.+|.++++
T Consensus       296 g-~G~~Pigavv~~  308 (442)
T TIGR03372       296 G-GGVMPIGATIAT  308 (442)
T ss_pred             c-CCcccceEEEec
Confidence            5 56 689998874

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PLN02263 serine decarboxylase

Probab=99.19  E-value=4.5e-09  Score=96.75  Aligned_cols=176  Identities=15%  Similarity=0.002  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      +..++++.+-+|+.+-++.+-+.-.=++|+|+|+++..++.+..+  +...|++++-+|.+....++.+|++++.+|.+ 
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d-  208 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL-  208 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-
Confidence            457888899999888766432111348899999999988887764  33478889999999999999999999999875 


Q ss_pred             CCCCCCCHHHHHhhcccC---ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-----eEEEccCCcccccCC-CCCC
Q 022213          163 ERNWEVDLDAVEALADKN---TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV-----MVVADEVYGHLTFGS-IPYT  233 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~ii~D~~y~~~~~~~-~~~~  233 (301)
                       .++.+|++.|++.+.++   +.+|+.+..+.++|.+=+   +++|+++|+++|+     |+.+|.+|+.+...- ...+
T Consensus       209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~  284 (470)
T PLN02263        209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP  284 (470)
T ss_pred             -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence             35679999999988653   344556677889999988   8888888889986     999999998865411 0111


Q ss_pred             CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .+. +....+-|. .+.+|. +..-..+|.++..+
T Consensus       285 ~~d-f~~~vDSIs-vD~HK~-l~~P~~cgvll~R~  316 (470)
T PLN02263        285 KVT-FKKPIGSVS-VSGHKF-VGCPMPCGVQITRM  316 (470)
T ss_pred             ccC-CCcCccEEE-ECCccc-cCCCcCEEEEEEeh
Confidence            111 111122343 389998 55667789888864

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.17  E-value=4.1e-09  Score=94.68  Aligned_cols=222  Identities=14%  Similarity=0.135  Sum_probs=146.1

Q ss_pred             cCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .-++..+|++..+.- ..+  -..++.+.+++++++.++.  .|+.+   .++.-.+|+++.+..+   ..|.|-+++++
T Consensus        49 DvDGn~YIDy~~~~Gp~il--GH~~p~V~~Av~~~l~~G~--~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSG  118 (432)
T COG0001          49 DVDGNEYIDYVLGWGPLIL--GHAHPAVVEAVQEQLERGL--SFGAP---TELEVELAELLIERVP---SIEKVRFVNSG  118 (432)
T ss_pred             eCCCCEeeehhccCccccc--CCCCHHHHHHHHHHHHhcC--CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecch
Confidence            446888999988843 222  2355679999999998654  57765   4677778888876433   34899999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHH-HhcCceEEEe--ecCC---C---CC----CCCCHHHHHhhcccC-
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIA-QRKQVEVRHF--DLLP---E---RN----WEVDLDAVEALADKN-  180 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~--~~~~---~---~~----~~~~~~~l~~~~~~~-  180 (301)
                      |||...+++....  ..|+|+..+-+|++....+ ...|-.....  |-.+   .   +.    -=.|++.+++++.+. 
T Consensus       119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g  198 (432)
T COG0001         119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG  198 (432)
T ss_pred             hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence            9999999987742  4589999999998764333 3333111111  0000   0   00    014789999888764 


Q ss_pred             -ccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          181 -TAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       181 -~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                       -.+.+|.-|  .| .|. ...++.++.|-++|+++|.++|.||+--.|...-........+.+  ++   .++.|. ..
T Consensus       199 ~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~P--Dl---ttlGKi-IG  271 (432)
T COG0001         199 DDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEP--DL---TTLGKI-IG  271 (432)
T ss_pred             CcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCc--ch---hhhhhh-hc
Confidence             345556666  55 455 455678999999999999999999999887654212222222222  22   378999 56


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      .|+.+|.+.++        .++++.+..
T Consensus       272 GGlP~ga~gGr--------~eiM~~~~p  291 (432)
T COG0001         272 GGLPIGAFGGR--------AEIMEQLAP  291 (432)
T ss_pred             CCcceeeeccH--------HHHHhhhCC
Confidence            89999999873        346665543

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.17  E-value=1.3e-09  Score=104.62  Aligned_cols=171  Identities=16%  Similarity=0.103  Sum_probs=120.0

Q ss_pred             CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEE
Q 022213           79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH  157 (301)
Q Consensus        79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~  157 (301)
                      +.-.+.| +.+..+..|+.+.       .....++++|+|.++.+++++++.+||+|+++..+|-+....+...|+.+++
T Consensus       189 dLl~~~G~i~eAe~~aA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVY  261 (713)
T PRK15399        189 SLLDHTGPHLEAEEYIARTFG-------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIW  261 (713)
T ss_pred             CCCCCChHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEE
Confidence            3333344 4567777777762       2346789999999999999999999999999999999988899999999999


Q ss_pred             eecCCCCCC----CCCH-----HHHHhhccc-----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeE-EEccCC
Q 022213          158 FDLLPERNW----EVDL-----DAVEALADK-----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMV-VADEVY  222 (301)
Q Consensus       158 ~~~~~~~~~----~~~~-----~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~i-i~D~~y  222 (301)
                      +.... +.+    .++.     +.+++.+.+     +++++++++|+ -.|.+++   +++|++.|   |+.+ ++||+|
T Consensus       262 l~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd---~~~I~~~~---g~~~ilvDEAh  333 (713)
T PRK15399        262 LKPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYN---TDWIKQTL---DVPSIHFDSAW  333 (713)
T ss_pred             ecccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeC---HHHHHHHh---CCCEEEEeccc
Confidence            87532 222    2344     788887754     23578888884 5899999   66677766   5555 699999


Q ss_pred             cccc-cCCC--CCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          223 GHLT-FGSI--PYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       223 ~~~~-~~~~--~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ..+. |.+.  ...++... ..+.-++++.|.+|.  ++++.-+.++-
T Consensus       334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKt--L~alTQaS~iH  379 (713)
T PRK15399        334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKM--LAAFSQASLIH  379 (713)
T ss_pred             hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcc--ccccchheeee
Confidence            9653 3321  11222211 123335789999998  56666666543

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.16  E-value=5.5e-10  Score=107.21  Aligned_cols=171  Identities=16%  Similarity=0.116  Sum_probs=122.4

Q ss_pred             CCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEE
Q 022213           79 CYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH  157 (301)
Q Consensus        79 ~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~  157 (301)
                      +.-.+.| +.+..+..|+.++       .....++++|+|.++.+++.+++.+||+|+++..+|-+....+...|+.+++
T Consensus       189 dLl~~~G~i~eAe~~AA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVY  261 (714)
T PRK15400        189 SLLDHSGPHKEAEEYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIY  261 (714)
T ss_pred             CCCCCChHHHHHHHHHHHHhC-------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            3333344 4567777777762       2346789999999999999999999999999999999988899999999999


Q ss_pred             eecCCCCCC----CCC-----HHHHHhhcccC-----ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213          158 FDLLPERNW----EVD-----LDAVEALADKN-----TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG  223 (301)
Q Consensus       158 ~~~~~~~~~----~~~-----~~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~  223 (301)
                      +.... +.+    .++     .+.+++.+.+.     ++.+++++|+ -.|.+++   +++|++.|+.++  |++||+|.
T Consensus       262 l~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd---~~~I~~~~~~~~--ilvDEAwg  334 (714)
T PRK15400        262 FRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYN---TDFIKKTLDVKS--IHFDSAWV  334 (714)
T ss_pred             ecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecC---HHHHHHHhCCCC--EEEEccch
Confidence            87543 222    234     78888877542     2368888884 5899999   777888887777  68999998


Q ss_pred             ccc-cCCCC--CCCccccC-CCCCEEEEecCcccCCCCcceeEEEE
Q 022213          224 HLT-FGSIP--YTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       224 ~~~-~~~~~--~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      .+. |.+.-  ..++.... .++-++++.|.+|.  ++++.-+.++
T Consensus       335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alTQaS~L  378 (714)
T PRK15400        335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFSQASMI  378 (714)
T ss_pred             hhhccCcccCCcChhhcCCCCCCceEEEEchhhc--ccchhHHhHH
Confidence            753 33211  12222111 12347999999998  5666666543

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.14  E-value=8.2e-09  Score=93.66  Aligned_cols=198  Identities=20%  Similarity=0.185  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-----CCCEEEcCCHHHHHHHHHHHhcC--------C
Q 022213           64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-----ADDVYVTLGCKQAVEVILSVLAR--------P  130 (301)
Q Consensus        64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~t~g~~~al~~~~~~l~~--------~  130 (301)
                      +.+.+...++. ....|.......++++.+.+|+.+.+|.+..     ...=++|+|+|+++..++.+..+        .
T Consensus        56 ~~~~l~~~~n~-n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~  134 (373)
T PF00282_consen   56 LADLLASALNQ-NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK  134 (373)
T ss_dssp             HHHHHHHHHT--BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcc-cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc
Confidence            44555555543 3334554445788999999999987775511     23468999999999888765532        1


Q ss_pred             C-----C-EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---C--cc-EEEEcCCCCCcccCCC
Q 022213          131 G-----A-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---N--TA-AMVIINPGNPCGNVFT  198 (301)
Q Consensus       131 g-----d-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~-~v~l~~p~nptG~~~~  198 (301)
                      |     . .|++.+-+|.+....+..+|+.++.|+++.  ++.+|.++|++.+.+   +  +. .|+.+..+..||.+=+
T Consensus       135 ~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~  212 (373)
T PF00282_consen  135 GVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP  212 (373)
T ss_dssp             TTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S
T ss_pred             ccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC
Confidence            2     2 466677789999999999999999998865  456999999988753   2  22 4555667888999866


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                         +++|+++|+++++|+.+|.+|+...+--+.......--+..+-|.+ +++|.++ .-..+|+++..+.
T Consensus       213 ---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~-d~HK~l~-~P~~~~~~l~r~~  278 (373)
T PF00282_consen  213 ---LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITI-DPHKWLG-VPYGCGVLLVRDK  278 (373)
T ss_dssp             ---HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEE-ETTTTTS--SSS-EEEEESSG
T ss_pred             ---HHHHhhhccccceeeeeccccccccccccccccccccccccccccc-chhhhhc-CCccceeEEeecc
Confidence               8899999999999999999999843311111111111111122433 8999955 5568999988664

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.13  E-value=5.7e-09  Score=104.26  Aligned_cols=203  Identities=20%  Similarity=0.187  Sum_probs=130.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC---C---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA---T---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~---~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ...+|.|+. ..     .+.++.+...+   +..+....|.   |   .+|..++..++.+++.+-.|    .+++.+..
T Consensus       498 ~~~~i~lGs-ct-----~~~~p~~~~~~---~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG----~d~~sl~~  564 (954)
T PRK05367        498 DRSMIPLGS-CT-----MKLNAAAEMIP---ITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITG----YDAVSLQP  564 (954)
T ss_pred             ccceeeCCc-CC-----CcCCHHHHHHH---HhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHC----CCCEEECc
Confidence            345777777 32     23334443332   2223333344   3   23556666777777766544    33666655


Q ss_pred             -CHHHHHHHHHHHhc----CCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---Ccc
Q 022213          115 -GCKQAVEVILSVLA----RPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTA  182 (301)
Q Consensus       115 -g~~~al~~~~~~l~----~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~  182 (301)
                       |++++....+.++.    ++||    +|++++..|......+...|++++.++.+..  ..+|+++|++.+++   ++.
T Consensus       565 ~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~--G~iD~~~L~~~i~~~~~~la  642 (954)
T PRK05367        565 NAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN--GNIDLDDLRAKAEEHADNLA  642 (954)
T ss_pred             cHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC--CCcCHHHHHHHHhccCCCeE
Confidence             44454434333332    4565    6999999998777788899999999988643  45999999998865   356


Q ss_pred             EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----c
Q 022213          183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----G  258 (301)
Q Consensus       183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G  258 (301)
                      ++++++|++-.+...+   +++|+++|+++|+++++|.++......-.   ....++-+   ++..|++|+|+.|    |
T Consensus       643 ~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~l~---~pg~~GAD---i~~~s~HK~f~~P~G~GG  713 (954)
T PRK05367        643 AIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVGLA---RPGDIGAD---VSHLNLHKTFCIPHGGGG  713 (954)
T ss_pred             EEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccCCC---ChhhcCCC---EEEecCcccCCCCcCCCC
Confidence            6778888876444466   89999999999999999999964322211   11223322   7888999997643    4


Q ss_pred             ceeEEEEee
Q 022213          259 WRFGWLVTN  267 (301)
Q Consensus       259 ~rvG~~~~~  267 (301)
                      -.+|.+.+.
T Consensus       714 Pg~G~l~vr  722 (954)
T PRK05367        714 PGVGPIGVK  722 (954)
T ss_pred             CceEEEeec
Confidence            558888774

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.13  E-value=4.4e-09  Score=98.92  Aligned_cols=230  Identities=15%  Similarity=0.106  Sum_probs=134.9

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+|||..|.-...- -..++.+.+++.++++....  +... .+..+....+++.+.+... ..+.+.+++++++
T Consensus        85 D~dG~~ylD~~sg~~~~~l-Gh~hp~v~~Av~~ql~~~~~--~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SG  160 (504)
T PLN02760         85 DINGKKYLDALAGLWCTAL-GGSEPRLVAAATEQLNKLPF--YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSG  160 (504)
T ss_pred             ECCCCEEEEcCcCHHhccc-CCCCHHHHHHHHHHHhhccc--eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCCh
Confidence            4468899999887311111 13457889999999874321  1111 2334566667777654321 1223579999999


Q ss_pred             HHHHHHHHHHhc-------CCC-CEEEEcCCCCcchHHHHHh-cCce------------EEEeecCCCCCC---C-----
Q 022213          117 KQAVEVILSVLA-------RPG-ANVLLPRPGWPYYEGIAQR-KQVE------------VRHFDLLPERNW---E-----  167 (301)
Q Consensus       117 ~~al~~~~~~l~-------~~g-d~Vl~~~p~~~~~~~~~~~-~g~~------------~~~~~~~~~~~~---~-----  167 (301)
                      ++|.+.+++...       .++ .+|+..+-+|++....... .|..            +..++......+   .     
T Consensus       161 sEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  240 (504)
T PLN02760        161 SEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEE  240 (504)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHH
Confidence            999999999773       123 5788888888875332221 2211            111111100000   0     


Q ss_pred             ---CCHHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          168 ---VDLDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       168 ---~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                         ...+.+++.+.   .+..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||++..+...+..+ ....++
T Consensus       241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~-a~e~~g  319 (504)
T PLN02760        241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYN  319 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhh-HHHhcC
Confidence               01234665553   12334455555 4445654 567899999999999999999999998764444322 223333


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      -..+++   +++|.++...+.+|.++++.        ++++.+.
T Consensus       320 v~PDiv---tlgK~lggG~~PigAv~~~~--------~i~d~~~  352 (504)
T PLN02760        320 IKPDLV---SLAKALSSAYMPIGAVLVSP--------EISDVIH  352 (504)
T ss_pred             CCCcEE---EecccccCCccccceEeecH--------HHHhhhh
Confidence            333444   78999654335889988743        4666664

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.13  E-value=8.4e-09  Score=101.76  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=120.8

Q ss_pred             CCCCCCC---CCCHHHHHHHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCCcch
Q 022213           77 FNCYATN---SGIPPARRAIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLAR--------PGANVLLPRPGWPYY  144 (301)
Q Consensus        77 ~~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~--------~gd~Vl~~~p~~~~~  144 (301)
                      ++-|.|.   +|..++..++.+|+.+-.|.+    ++- ..+++.++-...+.++..        ..++|+++...|...
T Consensus       516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn  591 (939)
T TIGR00461       516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD----AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN  591 (939)
T ss_pred             cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC----CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence            4455543   456666666666666644433    333 344445444433433321        236799999999776


Q ss_pred             HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213          145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV  221 (301)
Q Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~  221 (301)
                      ...++..|++++.++.+.  +..+|+++|++.+++   ++++|++++|+| +|.+.+  .+++|+++|+++|.++++|.+
T Consensus       592 Pasa~~~G~~Vv~V~~d~--~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgA  666 (939)
T TIGR00461       592 PASAAMAGMQVVPVNCDQ--DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGA  666 (939)
T ss_pred             HHHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEec
Confidence            777888999999998753  445999999999974   788899999999 777754  388999999999999999999


Q ss_pred             CcccccCCCCCCCccccCCCCCEEEEecCcccCCC----CcceeEEEEeeC
Q 022213          222 YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV----PGWRFGWLVTND  268 (301)
Q Consensus       222 y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~----~G~rvG~~~~~~  268 (301)
                      +..-...   ......++-+   ++.+|.+|+|+.    .|-.+|.+.+..
T Consensus       667 q~~al~~---l~~Pg~~GaD---i~~~s~HKtf~~P~G~GGPg~G~i~vr~  711 (939)
T TIGR00461       667 NMNAQVG---LTSPGDLGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKS  711 (939)
T ss_pred             ChhhCCC---CCCccccCCC---EEEecCCccCCCCCCCCCCCeEEEEEhh
Confidence            9652211   1111233333   888899997663    466789998853

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.11  E-value=2.7e-09  Score=99.32  Aligned_cols=221  Identities=13%  Similarity=0.080  Sum_probs=132.6

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|--.. .--..++.+.+++.+++.....  +.. ....+.+..+++.+.+..+  -..+.++++++
T Consensus        76 l~D~dG~~ylD~~~g~~~~-~lGH~~p~v~~Ai~~ql~~l~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S  149 (459)
T PRK11522         76 LVDTQGQEFIDCLGGFGIF-NVGHRNPVVVSAVQNQLAKQPL--HSQ-ELLDPLRAMLAKTLAALTP--GKLKYSFFCNS  149 (459)
T ss_pred             EEECCCCEEEECCcCHHhh-hcCCCCHHHHHHHHHHHhhCcc--ccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            4445688899987772111 1123457888999998874321  111 1224556666666655322  12368999999


Q ss_pred             HHHHHHHHHHHhcC----CC-CEEEEcCCCCcchHHHHHhc-CceEE---EeecCCCCC--CCCCHHHHHhhccc-----
Q 022213          116 CKQAVEVILSVLAR----PG-ANVLLPRPGWPYYEGIAQRK-QVEVR---HFDLLPERN--WEVDLDAVEALADK-----  179 (301)
Q Consensus       116 ~~~al~~~~~~l~~----~g-d~Vl~~~p~~~~~~~~~~~~-g~~~~---~~~~~~~~~--~~~~~~~l~~~~~~-----  179 (301)
                      +++|.+.+++....    +| .+|+...-+|++........ +....   +.+..+.-.  --.|.+.+++.++.     
T Consensus       150 GsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  229 (459)
T PRK11522        150 GTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTG  229 (459)
T ss_pred             chHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccC
Confidence            99999999986642    23 46888888898764333322 21100   111111000  01266777776642     


Q ss_pred             CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC
Q 022213          180 NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP  257 (301)
Q Consensus       180 ~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~  257 (301)
                      ...+.++.-| ..-.|.. .+.+.++++.++|++||+++|+||++..+...+. ......++-..+++   +++|.++ .
T Consensus       230 ~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDiv---t~gK~lg-g  304 (459)
T PRK11522        230 DDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDIL---CLAKALG-G  304 (459)
T ss_pred             CcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccCCCCCEE---Eechhhh-C
Confidence            2234445555 5555664 4677899999999999999999999987644443 22222333333444   7899965 4


Q ss_pred             c-ceeEEEEee
Q 022213          258 G-WRFGWLVTN  267 (301)
Q Consensus       258 G-~rvG~~~~~  267 (301)
                      | +.+|.+++.
T Consensus       305 G~~Pigav~~~  315 (459)
T PRK11522        305 GVMPIGATIAT  315 (459)
T ss_pred             CCccceeEEEc
Confidence            5 689999884

>PRK07482 hypothetical protein; Provisional

Probab=99.11  E-value=7.6e-09  Score=96.56  Aligned_cols=221  Identities=16%  Similarity=0.122  Sum_probs=134.6

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ...+++.+||+..|.-...- -..++.+.++++++++...+  +... ....+.+..+|+.+.+..+  .+.+.++++++
T Consensus        45 ~D~dG~~ylD~~sg~~~~~l-Gh~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~s  119 (461)
T PRK07482         45 TDAQGRRYIDAFAGLYCVNV-GYGRTEVAEAIAEQAKELAY--YHTYVGHGTEASITLSKRIIDRAP--AGMSKVYYGLS  119 (461)
T ss_pred             EECCCCEEEEcccchhhhcC-CCCCHHHHHHHHHHHHhcCc--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCc
Confidence            34568899999888332211 13457889999999875321  1111 1224566667777765322  13468999999


Q ss_pred             HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCC---CC----
Q 022213          116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERN---WE----  167 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~---~~----  167 (301)
                      +++|++.+++....       + ..+|+...-+|++..........             .+..++......   +.    
T Consensus       120 GSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  199 (461)
T PRK07482        120 GSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEE  199 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHH
Confidence            99999999997741       2 35788888889875332221110             111121111000   00    


Q ss_pred             ----CCHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          168 ----VDLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       168 ----~~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                          .+++.+++.+..   +..+.++.-| ....|.. .+.+.+++|.++|++||+++|.||++..+...+.-+ ....+
T Consensus       200 ~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~~~~  278 (461)
T PRK07482        200 QFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHY  278 (461)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchh-hHHhc
Confidence                134666766631   2334455555 4444665 577899999999999999999999999875544322 23334


Q ss_pred             CCCCCEEEEecCcccCCCCcc-eeEEEEee
Q 022213          239 GSIVPVITLGSISKRWLVPGW-RFGWLVTN  267 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~  267 (301)
                      +-..+++   +++|.++ .|+ .+|.+++.
T Consensus       279 gv~PDiv---~~gKgl~-gG~~Pi~av~~~  304 (461)
T PRK07482        279 GIEPDLI---TVAKGLT-SAYAPLSGSIVG  304 (461)
T ss_pred             CCCCCEE---EEccccc-cCccccceeeec
Confidence            4445566   5699954 464 88888874

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.11  E-value=5.5e-09  Score=96.77  Aligned_cols=223  Identities=16%  Similarity=0.120  Sum_probs=135.3

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|--... .-...+.+.+++.+++.......+     ..+.+.++++.+.+..+   ..+.++++++++
T Consensus        49 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~~~~-----~~~~~~~la~~l~~~~p---~~~~v~f~~sGs  119 (428)
T PRK12389         49 DVDGNKYIDYLAAYGPII-TGHAHPHITKAITEAAENGVLYGT-----PTELEIEFAKMLKEAIP---SLEKVRFVNSGT  119 (428)
T ss_pred             eCCCCEEEEccccccccc-cCCCCHHHHHHHHHHHHhCCccCC-----CCHHHHHHHHHHHHhCC---CCcEEEEeCCHH
Confidence            446888999977732111 123457788999999875432122     12445566666654322   246899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-CceEEEe------ecC---CCCC---CCCCHHHHHhhccc--C
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVEVRHF------DLL---PERN---WEVDLDAVEALADK--N  180 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~------~~~---~~~~---~~~~~~~l~~~~~~--~  180 (301)
                      +|.+.+++....  ...+|+...-+|++........ +......      ...   ..+.   --.|++.+++.+..  .
T Consensus       120 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  199 (428)
T PRK12389        120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD  199 (428)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCC
Confidence            999999987653  2367888888888764333222 2111000      000   0000   01267888877743  2


Q ss_pred             ccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..+.++.-| ..-.|.+. +.+.+++|.++|++||+++|.||++..+ ..+.. .....++-..+++   +++|.++ .|
T Consensus       200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~-~a~~~~gv~PDiv---t~gK~lg-gG  273 (428)
T PRK12389        200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYG-GAQDLLGVEPDLT---ALGKIIG-GG  273 (428)
T ss_pred             cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcc-hhhHHhCCCCCee---eechhhc-CC
Confidence            234444444 55567654 6789999999999999999999999987 32211 0111122233444   7899964 67


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHH
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +.+|.++++.        ++++.+.
T Consensus       274 ~Pi~av~~~~--------~i~~~~~  290 (428)
T PRK12389        274 LPIGAYGGRK--------DIMEQVA  290 (428)
T ss_pred             CceeEEeEHH--------HHHhhhc
Confidence            9999997732        4666654

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.09  E-value=1.1e-08  Score=95.36  Aligned_cols=218  Identities=12%  Similarity=0.026  Sum_probs=129.6

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.+||+..+...   .+. ..+.+.+++.++++...   +.......+.+.++++.+.+..+  ...+.++++++++
T Consensus        69 ~dG~~ylD~~g~~~~---~lGh~~p~v~~Ai~~ql~~~~---~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGs  140 (459)
T PRK06082         69 VDGKKYMDFHGNNVH---QLGYGHPHVIEKVKEQMAKLP---FSPRRFTNETAIECAEKLTEIAG--GELNRVLFAPGGT  140 (459)
T ss_pred             CCCCEEEEcccHhhc---ccCCCCHHHHHHHHHHHHhCC---CccCccCCHHHHHHHHHHHHhCC--CCCCEEEECCCcH
Confidence            457788898633221   122 56788999999987422   22112234566667776655332  1236899999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-hcCce------------EEEeecCCCC--CCC-C------CHHHH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-RKQVE------------VRHFDLLPER--NWE-V------DLDAV  173 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~~g~~------------~~~~~~~~~~--~~~-~------~~~~l  173 (301)
                      +|++.+++....  ...+|+...-+|++...... ..+..            +..++.....  .+. .      +++.+
T Consensus       141 eAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  220 (459)
T PRK06082        141 SAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL  220 (459)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence            999999987642  23688888888887532222 11211            1112211000  010 0      12446


Q ss_pred             Hhhccc-CccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          174 EALADK-NTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       174 ~~~~~~-~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      ++.++. ...+.++.-| .+..+...+.+.+++|.++|++||+++|.||+...+...+.- .....++-..+++   +++
T Consensus       221 ~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~-fa~e~~gv~PDiv---~~g  296 (459)
T PRK06082        221 EYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEW-FTHQAYGIEPDIL---CIG  296 (459)
T ss_pred             HHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchh-hHhHhhCCCCCEE---Eec
Confidence            666642 2234445555 444455678889999999999999999999999986444432 1222333334445   489


Q ss_pred             ccCCCCcceeEEEEeeC
Q 022213          252 KRWLVPGWRFGWLVTND  268 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~  268 (301)
                      |.++...+.+|.+++++
T Consensus       297 Kgl~gG~~P~~av~~~~  313 (459)
T PRK06082        297 KGLGGGLVPIAAMITKD  313 (459)
T ss_pred             ccccCCCCcceEEEEcH
Confidence            99764335899998743

>PRK07678 aminotransferase; Validated

Probab=99.09  E-value=8.3e-09  Score=96.10  Aligned_cols=229  Identities=13%  Similarity=0.066  Sum_probs=134.4

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|--... --..++.+.+++.++++....  +.. ....+....+++.+.+..+   ..+.++++++
T Consensus        41 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~-~~~~~~~~~lae~l~~~~~---~~~~v~f~~s  113 (451)
T PRK07678         41 VTDIQGNRYLDGMSGLWCVN-VGYGRKELAEAAYEQLKTLSY--FPL-TQSHEPAIKLAEKLNEWLG---GEYVIFFSNS  113 (451)
T ss_pred             EEeCCCCEEEEccccHHhhc-CCCCCHHHHHHHHHHHHhcCc--ccc-ccCCHHHHHHHHHHHHhCC---CCCEEEEeCC
Confidence            33456889999987722111 123457888999988874321  111 1123344556666654322   1358999999


Q ss_pred             HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213          116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE-----  167 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~-----  167 (301)
                      +++|.+.+++....       +| .+|+...-+|++....+... +.            .+..++......  +.     
T Consensus       114 GseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (451)
T PRK07678        114 GSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDI  193 (451)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHH
Confidence            99999999987642       23 57888888898764333221 11            112222110000  00     


Q ss_pred             CC---HHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          168 VD---LDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       168 ~~---~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .+   ++.+++.+.   ....+.++.-| ..-.|.+ .+.+.++++.++|++||+++|.||++..|...+. ......++
T Consensus       194 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g  272 (451)
T PRK07678        194 YDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG  272 (451)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC
Confidence            01   123455453   12344455555 3335555 5678999999999999999999999988755443 22223344


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      -..+++   +++|.++..++.+|.+++++        ++.+.+.
T Consensus       273 v~PDiv---t~gK~lggG~~Pi~av~~~~--------~i~~~~~  305 (451)
T PRK07678        273 VKPDII---TMAKGITSAYLPLSATAVKK--------EIYEAFK  305 (451)
T ss_pred             CCCCEE---EeecccccCCcceeEEEEcH--------HHHHHHh
Confidence            344555   67999665447899998843        4666554

>PRK07046 aminotransferase; Validated

Probab=99.08  E-value=1.7e-08  Score=93.88  Aligned_cols=219  Identities=16%  Similarity=0.109  Sum_probs=134.3

Q ss_pred             cCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..++..+|||..|. +...  -..++.+.+++.++++......+     ..+...++|+.+.+..    ..+.+.+++++
T Consensus        71 D~DG~~yiD~~~g~g~~~l--Gh~~p~i~~Av~~q~~~~~~~~~-----~~~~~~~lAe~l~~~~----~~~~v~F~nSG  139 (453)
T PRK07046         71 DVDGHRYDDFCLGDTGAMF--GHSPAPVARALAEQARRGLTTML-----PSEDAAWVGEELARRF----GLPYWQVATTA  139 (453)
T ss_pred             eCCCCEEEEeccccccccc--CCCCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHh----CCCEEEEECCH
Confidence            44678899987663 2211  23457889999999875432222     2355566666665532    35789999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH-h-cCceE----EE--ee--cCC---CCCCCCCHHHHHhhcccCc
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ-R-KQVEV----RH--FD--LLP---ERNWEVDLDAVEALADKNT  181 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~-~-~g~~~----~~--~~--~~~---~~~~~~~~~~l~~~~~~~~  181 (301)
                      +||.+.+++....  ..++|+...-+|+++..... . .+...    ..  ++  ...   .-.| .|++.+++.+....
T Consensus       140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~  218 (453)
T PRK07046        140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGD  218 (453)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCC
Confidence            9999999987752  34789988888988632211 1 00000    00  00  000   0001 37888988885444


Q ss_pred             cEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          182 AAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       182 ~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      .+.++.-| ....|. ..+.+.++++.++|++||+++|.||+.. +..+-....  ..++-..+++   +++|.++ .|+
T Consensus       219 vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~--~~~gv~PDi~---t~gK~lg-gG~  291 (453)
T PRK07046        219 VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYT--RAHGLEPDFL---VVGKPIA-GGV  291 (453)
T ss_pred             eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchh--HHhCCCccce---eehhhhc-CCC
Confidence            45556666 333344 4556799999999999999999999986 322111111  1222233444   6899965 589


Q ss_pred             eeEEEEeeCCCCcccchhHHHHHH
Q 022213          260 RFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       260 rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      .+|.++++.        ++++.+.
T Consensus       292 Pi~av~g~~--------~i~~~~~  307 (453)
T PRK07046        292 PCAVYGFSA--------ELAERAQ  307 (453)
T ss_pred             cceeeeehH--------HHHHHHh
Confidence            999988743        4666664

>PRK06105 aminotransferase; Provisional

Probab=99.08  E-value=1.6e-08  Score=94.40  Aligned_cols=232  Identities=16%  Similarity=0.114  Sum_probs=136.6

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-... .-..++.+.+++.+++++.... ........+.+.++++.+.+..+  .+-++++++++
T Consensus        42 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S  117 (460)
T PRK06105         42 VYDDAGKRYIEGMAGLWSVA-LGFSEQRLVEAAARQMKKLPFY-HTFSHKSHGPVIDLAEKLVAMAP--VPMSKVFFTNS  117 (460)
T ss_pred             EEECCCCEEEEcchhHHhcc-CCCCCHHHHHHHHHHHHhCCCe-ecccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            33456889999988732111 1234578889999998743210 01111234555566666655332  12368999999


Q ss_pred             HHHHHHHHHHHhc------C-C-CCEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCCCCCC-------
Q 022213          116 CKQAVEVILSVLA------R-P-GANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPERNWE-------  167 (301)
Q Consensus       116 ~~~al~~~~~~l~------~-~-gd~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~-------  167 (301)
                      +++|.+.+++...      . + ..+|+...-+|++........ +..            +..++......+.       
T Consensus       118 GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  197 (460)
T PRK06105        118 GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEE  197 (460)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChH
Confidence            9999999999753      1 2 357888888888754322111 111            1111111000000       


Q ss_pred             ----CCHHHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          168 ----VDLDAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       168 ----~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                          ...+++++.+.   .+..+.++.-| ..-.|.. .+.+.++++.++|++||+++|.||++..+...+.-+ ....+
T Consensus       198 ~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f-~~~~~  276 (460)
T PRK06105        198 AFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMF-GCETF  276 (460)
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhh-hHHhc
Confidence                01345666553   12334455555 5455665 578899999999999999999999998765444322 23333


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +-..+++   +++|.++...+.+|.+++++        ++.+.+.
T Consensus       277 ~v~PDi~---~~gK~lggG~~P~~av~~~~--------~i~~~~~  310 (460)
T PRK06105        277 GIKPDIL---VMSKQLSSSYQPLSAVLMNE--------KVYDPIA  310 (460)
T ss_pred             CCCCCee---eeecccccCcccceEEEEcH--------HHHHHHh
Confidence            3334445   78999764336899998843        4666554

>PRK05965 hypothetical protein; Provisional

Probab=99.08  E-value=7.6e-09  Score=96.49  Aligned_cols=223  Identities=17%  Similarity=0.144  Sum_probs=133.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +...+++.+||+..|.-... --...+.+.+++.++++....  .... ....+.+..+|+.+.+..+  -+.+.+++++
T Consensus        40 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~  114 (459)
T PRK05965         40 LTDASGHQLLDAFAGLWCVN-VGYGQESIVEAAAEQMRELPY--ATGYFHFGSEPAIRLAAKLAERAP--GSLNHVYFTL  114 (459)
T ss_pred             EEECCCCEEEECcccHHhcc-CCCCCHHHHHHHHHHHHhcCC--cccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeC
Confidence            34456889999987732111 112357888999999874321  1110 1123445556666655322  1346899999


Q ss_pred             CHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC--CCCCCC--
Q 022213          115 GCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE--RNWEVD--  169 (301)
Q Consensus       115 g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~~~--  169 (301)
                      ++++|++.+++....       + ..+|+...-+|++........ +.            ....++....  ..+..+  
T Consensus       115 sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (459)
T PRK05965        115 GGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQ  194 (459)
T ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChH
Confidence            999999999987542       2 357998888998764322111 11            0112221110  001112  


Q ss_pred             ------HHHHHhhccc---CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          170 ------LDAVEALADK---NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       170 ------~~~l~~~~~~---~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                            ++.+++.+..   +..+.++.-| +...|. ..+.+.++++.++|++||+++|.||+...+...+. ......+
T Consensus       195 ~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~  273 (459)
T PRK05965        195 AIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEAE  273 (459)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhhc
Confidence                  2456666642   2334445555 445566 46778999999999999999999999998765543 2233334


Q ss_pred             CCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          239 GSIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      +-..+++   +++|.++ .| +.+|.+++++
T Consensus       274 gv~PDiv---~~gKgl~-gG~~Pi~av~~~~  300 (459)
T PRK05965        274 GVVPDLM---TVAKGLT-SGYVPMGAVLMSD  300 (459)
T ss_pred             CCCCCeE---Eechhhc-cCCcceeEEEEcH
Confidence            4445566   6699964 57 5999999843

>PRK12403 putative aminotransferase; Provisional

Probab=99.07  E-value=2.6e-08  Score=92.95  Aligned_cols=222  Identities=19%  Similarity=0.137  Sum_probs=125.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +...+++.+||+..|--...-.. ..+.+.+++.++++.-..  +... .+..+....+++.+.+..+  ...+.+++++
T Consensus        48 l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~  122 (460)
T PRK12403         48 LWDNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPY--YNMFFHTTHPAVIELSELLFSLLP--GHYSHAIYTN  122 (460)
T ss_pred             EEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCC--eecccccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence            33456888999877621111112 457889999999874221  1111 1234555556666654322  1236899999


Q ss_pred             CHHHHHHHHHHHhc-------CCCC-EEEEcCCCCcchHHHH-HhcCce-----------EEEeecCCC--CCCCC----
Q 022213          115 GCKQAVEVILSVLA-------RPGA-NVLLPRPGWPYYEGIA-QRKQVE-----------VRHFDLLPE--RNWEV----  168 (301)
Q Consensus       115 g~~~al~~~~~~l~-------~~gd-~Vl~~~p~~~~~~~~~-~~~g~~-----------~~~~~~~~~--~~~~~----  168 (301)
                      ++++|++.+++...       ++++ .|+...-+|++..... ...+.+           +..++....  ..+..    
T Consensus       123 SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (460)
T PRK12403        123 SGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAE  202 (460)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHH
Confidence            99999999999874       2333 3555566777653222 211211           122221100  00011    


Q ss_pred             ----CHHHHHhhcc-c--CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          169 ----DLDAVEALAD-K--NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       169 ----~~~~l~~~~~-~--~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                          +.+.+++.+. .  ...+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||++..+...+.-+ ....++
T Consensus       203 ~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~e~~g  281 (460)
T PRK12403        203 FGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF-AHEHFG  281 (460)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-hhhhcC
Confidence                1244544442 1  2334445555 4445664 567899999999999999999999998765444322 222333


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEee
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTN  267 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~  267 (301)
                      -..+++   +++|.++ .| +.+|.++++
T Consensus       282 v~PDiv---~~gK~lg-gG~~Piga~v~~  306 (460)
T PRK12403        282 FEPDTL---SIAKGLT-SGYVPMGGLVLS  306 (460)
T ss_pred             CCCCeE---EEccccc-ccccceEEEEEC
Confidence            333445   4899965 46 488988874

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.07  E-value=3.1e-09  Score=98.42  Aligned_cols=168  Identities=17%  Similarity=0.107  Sum_probs=124.5

Q ss_pred             CCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           83 NSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        83 ~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      +.| +.+..+..|+.+.       .....++++|+|.++..++++++.+||.|+++..+|-+....+...|+.++++...
T Consensus        68 p~G~i~eAqe~aA~~fg-------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~  140 (557)
T COG1982          68 PEGPIKEAQELAARVFG-------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPS  140 (557)
T ss_pred             CCccHHHHHHHHHHHhC-------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCC
Confidence            344 4567777777762       23478999999999999999999999999999999999888889999999988754


Q ss_pred             CCCC----CCCCHHHHHhhcccC--c-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213          162 PERN----WEVDLDAVEALADKN--T-AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP  234 (301)
Q Consensus       162 ~~~~----~~~~~~~l~~~~~~~--~-~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~  234 (301)
                      ....    .+++.+.+++.+.++  . +.+++++|+. .|++++   +++|++.+++.++++.+|+++....-... ..+
T Consensus       141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~-~l~  215 (557)
T COG1982         141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSP-MLP  215 (557)
T ss_pred             CCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccccccc-cCc
Confidence            3332    357899998876543  3 5677777764 799999   88888888899999999999986432211 111


Q ss_pred             ccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          235 MGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       235 ~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      . .-...+.+++..|.+|.  ++++.-+.++
T Consensus       216 ~-~~~~~~~~~~tqS~HK~--l~alSQaS~i  243 (557)
T COG1982         216 E-SALNGGADFVTQSTHKL--LAALSQASMI  243 (557)
T ss_pred             c-hhhhcCceEEEechhhh--hhhhhhhHHH
Confidence            1 11123457999999998  4555555543

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.06  E-value=2.2e-08  Score=92.92  Aligned_cols=222  Identities=17%  Similarity=0.140  Sum_probs=129.4

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+++.++|+..|.-.. .--..++.+.+++++++++-..  ........+.+..+++.+.+..+  -..+.+++++++
T Consensus        41 ~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sG  115 (442)
T PRK13360         41 TTHDGRRVLDGTAGLWCV-NAGHGRPEIVEAVRAQAGELDY--APAFQMGHPKAFELANRIAEIAP--GGLNHVFFTNSG  115 (442)
T ss_pred             EeCCCCEEEECchhHHHh-ccCCCCHHHHHHHHHHHHhCCC--cccCCcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCc
Confidence            344688899997772111 1123457888999998874211  11111123445566666654322  123589999999


Q ss_pred             HHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHH-hcC------------ceEEEeecCC--C-CCCCC----
Q 022213          117 KQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQ-RKQ------------VEVRHFDLLP--E-RNWEV----  168 (301)
Q Consensus       117 ~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~-~~g------------~~~~~~~~~~--~-~~~~~----  168 (301)
                      ++|++.+++....       + ..+|+...-+|++...... ..|            ..+..+|...  . ..+..    
T Consensus       116 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  195 (442)
T PRK13360        116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE  195 (442)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHH
Confidence            9999999886542       2 2579988888987532211 111            1122222211  0 00111    


Q ss_pred             ----CHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          169 ----DLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       169 ----~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                          ..+.+++.+..   ...+.++.-| ....|.. .+.+.+++|.++|++||+++|+||++..+...+..+ ....++
T Consensus       196 ~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~g  274 (442)
T PRK13360        196 HGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFG  274 (442)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcC
Confidence                13466666642   2334455555 4455665 567889999999999999999999997764433322 122233


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      -..+++   +++|.++...+.+|.++++
T Consensus       275 v~PDiv---t~gK~l~gG~~P~gav~~~  299 (442)
T PRK13360        275 VTPDLL---TCAKGLTNGAIPMGAVFVS  299 (442)
T ss_pred             CCCcee---eeeeccccCccceEEEEEc
Confidence            233344   7899975433788998874

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.05  E-value=2.4e-08  Score=93.04  Aligned_cols=223  Identities=14%  Similarity=0.062  Sum_probs=133.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|--.. .--..++.+.+++.++++....  ........+.+..+++.+.+..+  ..-+.++++++
T Consensus        48 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~s  122 (453)
T PRK06943         48 LYDRDGRRYLDAISSWWVN-LFGHANPRINAALKDQLDTLEH--AMLAGCTHEPAIELAERLAALTG--GTLGHAFFASD  122 (453)
T ss_pred             EEeCCCCEEEEcchHHHHh-cCCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            3345688899997772111 0122457888999998874321  11111123455567776655322  12258999999


Q ss_pred             HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213          116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE-----  167 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~-----  167 (301)
                      +++|.+.+++...+       + ..+|+...-+|++........ +.            .+..++.....+  +.     
T Consensus       123 GseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  202 (453)
T PRK06943        123 GASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAAD  202 (453)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHH
Confidence            99999999997631       2 367998888898754222211 10            112222211000  00     


Q ss_pred             ---CCHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          168 ---VDLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       168 ---~~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                         -+++.+++.++.  ...+.++.-|  +...|. ..+.+.++++.++|++||+++|.||++..+...+. ......++
T Consensus       203 ~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~~~g  281 (453)
T PRK06943        203 VAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACEQAG  281 (453)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHHhCC
Confidence               124566666642  2334445555  455666 46788999999999999999999999998755443 22233344


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      -..+++   +++|.++ .| +.+|.+++++
T Consensus       282 v~PDiv---t~gKgl~-gG~~Pi~av~~~~  307 (453)
T PRK06943        282 VWPDFL---CLSKGIS-GGYLPLSLVLSRD  307 (453)
T ss_pred             CCCCeE---eeehhhc-cCcccceEEEEcH
Confidence            445566   5599965 57 5899998843

>PRK06062 hypothetical protein; Provisional

Probab=99.05  E-value=2e-08  Score=93.56  Aligned_cols=229  Identities=17%  Similarity=0.131  Sum_probs=136.5

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-.. .--...+.+.+++.+++.....  +.. ....+.+..+++.+.+..+  -..+.++++++
T Consensus        47 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~q~~~~~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S  120 (451)
T PRK06062         47 VWDYEGRRYLDFSSQLVNT-NIGHQHPKVVAAIQEQAARLCT--VAP-AHANDARSEAARLIAERAP--GDLSKVFFTNG  120 (451)
T ss_pred             EEECCCCEEEEcccCHHhh-cCCCCCHHHHHHHHHHHHhcCC--cCC-ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCC
Confidence            3345688999998773211 1122456788999988874321  122 2234556666776655322  12468999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cce-----------EEEeecCCCC--CCC--CC-------H
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QVE-----------VRHFDLLPER--NWE--VD-------L  170 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~~-----------~~~~~~~~~~--~~~--~~-------~  170 (301)
                      +++|.+.+++....  ...+|+...-+|++........ +..           +..++.....  .|.  .+       +
T Consensus       121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK06062        121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL  200 (451)
T ss_pred             hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence            99999999987642  2367888888888764333221 110           1111111000  010  12       4


Q ss_pred             HHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          171 DAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +.+++.++.   +..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|+||++..+...+.- .....++-..+++
T Consensus       201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~-~a~~~~gv~PDi~  279 (451)
T PRK06062        201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKW-FAIEHFGVVPDLI  279 (451)
T ss_pred             HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHH-HHHHhcCCCCCee
Confidence            566766642   2234445555 4445665 46789999999999999999999999986443321 1122233333444


Q ss_pred             EEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHH
Q 022213          246 TLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       246 ~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                         +++|.++ .| +.+|.+++++        ++++.+.
T Consensus       280 ---t~gK~lg-gG~~Pigav~~~~--------~i~~~~~  306 (451)
T PRK06062        280 ---TFAKGVN-SGYVPLGGVAISE--------AIAATFA  306 (451)
T ss_pred             ---eechhhh-cCCcCcEEEEEcH--------HHHHHhc
Confidence               7899965 46 4899988743        3666554

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.05  E-value=1.5e-08  Score=94.35  Aligned_cols=223  Identities=14%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-.. ..-..++.+.+++.++++.....  .......+.+.++++.+.+..+  ...+.++++++
T Consensus        47 l~D~dG~~ylD~~~g~~~~-~lGh~~p~i~~Ai~~ql~~~~~~--~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~S  121 (457)
T PRK05639         47 IEDVDGNVFIDFLAGAAAA-STGYSHPKLVKAVQEQVALIQHS--MIGYTHSERAIRVAEKLAEISP--IENPKVLFGLS  121 (457)
T ss_pred             EEeCCCCEEEECCcCHHhh-ccCCCCHHHHHHHHHHHHhcccc--ccCccCCHHHHHHHHHHHhhCC--CCcCEEEEeCc
Confidence            3345688899998773211 11234568889999988742211  1111112444456666654222  22368999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCC--CC----CCH---
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERN--WE----VDL---  170 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~----~~~---  170 (301)
                      +++|.+.+++....  ...+|+...-+|++........ +.             .+..+|......  +.    .+.   
T Consensus       122 GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  201 (457)
T PRK05639        122 GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL  201 (457)
T ss_pred             hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence            99999999987752  3467888888888754322211 10             122333221100  00    022   


Q ss_pred             -----HHHHhhc-----ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          171 -----DAVEALA-----DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       171 -----~~l~~~~-----~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                           +.+++.+     ..+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus       202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~  280 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWF  280 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHH-HHHhc
Confidence                 2344433     122344455555 444566 4568899999999999999999999998764444321 12223


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +-..+++.   ++|.++ .|+.+|.++++.
T Consensus       281 gv~PDiv~---~gK~l~-gG~pi~av~~~~  306 (457)
T PRK05639        281 EVKPDLII---FGKGVA-SGMGLSGVIGRK  306 (457)
T ss_pred             CCCCCEEE---echhhc-CCCcceeEEehH
Confidence            33334553   799965 578899998743

>PRK06149 hypothetical protein; Provisional

Probab=99.04  E-value=1.2e-08  Score=103.36  Aligned_cols=224  Identities=15%  Similarity=0.088  Sum_probs=131.9

Q ss_pred             cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.++++..|..    .++ ..+.+.+++.+++.....   .. ....+...++++.+.+...  -..+.+++++++
T Consensus       581 D~dG~~ylD~~~~~~----~lGh~hp~v~~Ai~~q~~~l~~---~~-~~~~~~~~elae~L~~~~p--~~~~~v~f~~SG  650 (972)
T PRK06149        581 DMAGRSYLDMVNNVT----VLGHGHPRLAAAAARQWSLLNT---NS-RFHYAAVAEFSERLAALAP--DGLDTVFLVNSG  650 (972)
T ss_pred             eCCCCEEEECCCCcc----ccCCCCHHHHHHHHHHHHhccc---cc-cccCHHHHHHHHHHHHhCC--CCcCEEEEeCCc
Confidence            345788999987642    233 567889999988874321   11 1122344555555544221  123689999999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc-C-----c--------eEEEeecCCC--CCCC-CC-----HHH
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK-Q-----V--------EVRHFDLLPE--RNWE-VD-----LDA  172 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-g-----~--------~~~~~~~~~~--~~~~-~~-----~~~  172 (301)
                      ++|.+.+++...  ....+|+...-+|++........ +     .        .+..++....  ..|. .+     .+.
T Consensus       651 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~  730 (972)
T PRK06149        651 SEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRD  730 (972)
T ss_pred             hHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHH
Confidence            999999998443  12357888888888643222111 0     0        0112221110  0111 11     133


Q ss_pred             HHhhcc-----cCccEEEEcCC--CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          173 VEALAD-----KNTAAMVIINP--GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       173 l~~~~~-----~~~~~v~l~~p--~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      ++..++     .+..+.++.-|  .+-.....+.+.++++.++|++||+++|.||++..+...+..+..+..++-..+++
T Consensus       731 ~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv  810 (972)
T PRK06149        731 VVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII  810 (972)
T ss_pred             HHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE
Confidence            333221     12344455555  33334567788999999999999999999999977655554333333343334555


Q ss_pred             EEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          246 TLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                         +++|.++ .|+.+|.++++.        ++++.+.
T Consensus       811 ---t~gK~lg-~G~Pl~av~~~~--------~i~~~~~  836 (972)
T PRK06149        811 ---TMAKGMG-NGHPLGAVITRR--------EIAEALE  836 (972)
T ss_pred             ---Eeccccc-CCeeeEEEEEcH--------HHHhhhc
Confidence               7899965 679999999843        4666654

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.04  E-value=1.2e-08  Score=94.42  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=133.8

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-.. ..-...+.+.+++.+++....  .+..   ..+.+.++++.+.+..+  ...+.++++++
T Consensus        47 l~D~dG~~yiD~~~g~~~~-~lGh~~p~v~~ai~~q~~~~~--~~~~---~~~~~~~la~~L~~~~~--~~~~~v~f~~S  118 (433)
T PRK00615         47 FIDSLGKTFIDFCGSWGSL-IHGHSHPKICDAIQQGAERGT--SYGL---TSEQEILFAEELFSYLG--LEDHKIRFVSS  118 (433)
T ss_pred             EEECCCCEEEEcccchhcc-ccCCCCHHHHHHHHHHHHhCC--CCCC---CCHHHHHHHHHHHHhCC--CCcCEEEEeCc
Confidence            3445688999997773221 112345788899999887533  2221   12344556666554322  12368999999


Q ss_pred             HHHHHHHHHHHhcC-CC-CEEEEcCCCCcchHHH---H-HhcCce---E-EEeecCC--CCC---CCCCHHHHHhhccc-
Q 022213          116 CKQAVEVILSVLAR-PG-ANVLLPRPGWPYYEGI---A-QRKQVE---V-RHFDLLP--ERN---WEVDLDAVEALADK-  179 (301)
Q Consensus       116 ~~~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~---~-~~~g~~---~-~~~~~~~--~~~---~~~~~~~l~~~~~~-  179 (301)
                      ++||.+.+++.... .| .+|+...-+|+++...   . ...+..   . ......+  ...   --.|.+.+++.+.. 
T Consensus       119 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  198 (433)
T PRK00615        119 GTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL  198 (433)
T ss_pred             hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc
Confidence            99999999987753 23 6788888888885411   1 111100   0 0000000  000   01267888877743 


Q ss_pred             -CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          180 -NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       180 -~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                       ...+.++..| ....|... +.+.+++|.++|++||+++|+||++..+ ..+... ....++-..+++   +++|.++ 
T Consensus       199 ~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g-a~~~~gv~PDi~---~~gK~lg-  272 (433)
T PRK00615        199 GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG-AAAIYHVKPDIT---VYGKILG-  272 (433)
T ss_pred             CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH-HHHhcCCCCCeE---EEccccc-
Confidence             2234455555 44456655 5678999999999999999999999776 333211 112222223344   5899965 


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      .|+.+|+++++.        ++++.+.
T Consensus       273 gG~p~~av~~~~--------~i~~~~~  291 (433)
T PRK00615        273 GGLPAAAVVAHK--------SIMDHLA  291 (433)
T ss_pred             CCcceeeeeecH--------HHHhhhc
Confidence            567889998743        4666664

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.03  E-value=3.1e-08  Score=92.09  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=128.2

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-.. .--..++.+.++++++++.-.  .+.......+....+++.+.+..+  ...+.++++++
T Consensus        43 l~D~dG~~ylD~~~g~~~~-~lGh~~p~v~~ai~~ql~~l~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~s  117 (445)
T PRK09221         43 YTDADGRKILDGTAGLWCC-NAGHGRPEIVEAVARQAATLD--YAPAFQMGHPLAFELAERLAELAP--GGLDHVFFTNS  117 (445)
T ss_pred             EEeCCCCEEEEccccHhhc-cCCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            3345688999998772211 112245778889998887421  111111123444556666654322  12368999999


Q ss_pred             HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-C------------ceEEEeecCC---CCCCCC---
Q 022213          116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-Q------------VEVRHFDLLP---ERNWEV---  168 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g------------~~~~~~~~~~---~~~~~~---  168 (301)
                      +++|.+.+++....       + ..+|+...-+|++........ +            ..+..++...   ...+..   
T Consensus       118 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (445)
T PRK09221        118 GSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQP  197 (445)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChH
Confidence            99999999986542       1 257888888888753222111 1            0112222210   000110   


Q ss_pred             -----CHHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          169 -----DLDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       169 -----~~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                           ..+.+++.++.   +..+.++.-| ....|.. .+.+.+++|.++|++||+++|+||++..+...+..+ ....+
T Consensus       198 ~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~  276 (445)
T PRK09221        198 EHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF-AAERF  276 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh-HHHhc
Confidence                 13456665542   2334444444 5556774 466789999999999999999999998764433321 12223


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +-..+++   +++|.++...+.+|.++++
T Consensus       277 gv~PDi~---~~gK~l~gG~~Pi~av~~~  302 (445)
T PRK09221        277 GVTPDII---TFAKGLTNGAIPMGAVIAS  302 (445)
T ss_pred             CCCCCEE---EeccccccCcccceeeEEc
Confidence            3223444   7899965433678998874

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.02  E-value=4.6e-09  Score=94.94  Aligned_cols=178  Identities=13%  Similarity=0.040  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCc
Q 022213           64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWP  142 (301)
Q Consensus        64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~  142 (301)
                      ..+++.+.+-.  ..++.+  -..++.+.+.+.+++.++.+.+.+-++++.|+|.++++++..++ ++||+|++.. .|.
T Consensus        19 ~~~~~~~~~~~--~~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG   93 (374)
T TIGR01365        19 SIEELKNAPLG--RSHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFG   93 (374)
T ss_pred             hHHHHhhhhcc--cCcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHH
Confidence            55666544321  112332  23455555555555555532222236779999999999999999 5899999865 444


Q ss_pred             c-hH-HHHHhcCc-eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213          143 Y-YE-GIAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD  219 (301)
Q Consensus       143 ~-~~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D  219 (301)
                      . +. .+++.+|+ ++..+...  .+..+++++++.  +   +.+++++....||+..+   +++++..+  ++.++|+|
T Consensus        94 ~r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v~~vhnETSTGv~np---v~~i~~~~--~~~lliVD  161 (374)
T TIGR01365        94 KGWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVP---NGDFIPAD--REGLTICD  161 (374)
T ss_pred             HHHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCEEEecCCCchheecc---cccccccc--CCCcEEEE
Confidence            2 34 77888999 47777643  344588888873  1   23678888889999999   45554322  48999999


Q ss_pred             cCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          220 EVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       220 ~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .+.+...    .+..+..++     +++.|..|++++|+ .+|+++++.
T Consensus       162 avSs~g~----~~l~~d~iD-----v~~tgsQK~L~~pp-Gls~v~vs~  200 (374)
T TIGR01365       162 ATSAAFA----QDLDYHKLD-----VVTFSWQKVLGGEG-AHGMLILSP  200 (374)
T ss_pred             ccchhcC----CCCChhHCc-----EEEEechhccCCCC-ceEEEEECH
Confidence            9988632    233333222     88899999998854 266777654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.01  E-value=2.4e-09  Score=96.93  Aligned_cols=180  Identities=12%  Similarity=0.051  Sum_probs=111.7

Q ss_pred             CChHHHHHHHHHHHhcCC-CCCCCC--CCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEc-CCHHHHHHHHHHHhcCCCCE
Q 022213           59 RTAVEAEDAIVDAVRSGK-FNCYAT--NSGIPPARRAIADYLSRDLPYKLS-ADDVYVT-LGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t-~g~~~al~~~~~~l~~~gd~  133 (301)
                      ..++.+.+++.+....-- ...+.+  ..-+.+.|+.+++++      ++. ..+|+++ +|+|.+++.++.+++.+ +.
T Consensus        13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~------~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~   85 (361)
T TIGR01366        13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELF------SLPDGYEVILGNGGATAFWDAATFGLIEK-KS   85 (361)
T ss_pred             CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHh------CCCCCceEEEECCchhHHHHHHHHhcccc-cc
Confidence            456778888764321000 112222  112456778888887      333 3478875 66999999999999743 33


Q ss_pred             EEEcCCCCc-chHHHHHhc--CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          134 VLLPRPGWP-YYEGIAQRK--QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       134 Vl~~~p~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      .++..-.|. .+...++..  +.++..++...  +..++     ..+.++++.|++++..|.||+..+   +++|   ++
T Consensus        86 l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~  152 (361)
T TIGR01366        86 LHLSFGEFSSKFAKAVKLAPWLGEPIIVTADP--GSAPE-----PQADPGVDVIAWAHNETSTGVAVP---VRRP---EG  152 (361)
T ss_pred             cEEecCHHHHHHHHHHHhhhccCCceEEecCC--CCCCC-----CccCCCCCEEEEcccCCccceecc---cccc---cc
Confidence            334343443 233344431  22556665432  22222     234567899999999999999999   5555   47


Q ss_pred             hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++|+++|+|.+.+.    +..+..+...+     ++++|..|.++.+|- ++.++++.
T Consensus       153 ~~g~~~iVDavqs~----g~~~idv~~~D-----~~~~s~~K~lg~~~G-l~~~~~s~  200 (361)
T TIGR01366       153 SDDALVVIDATSGA----GGLPVDIAETD-----VYYFAPQKNFASDGG-LWLAIMSP  200 (361)
T ss_pred             cCCCeEEEEcCccc----cCCCCCHHHCC-----EEEEEchhhcCCCCc-eEEEEECH
Confidence            89999999999987    33444444321     788999999998752 55555543

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.00  E-value=1.6e-08  Score=93.36  Aligned_cols=231  Identities=16%  Similarity=0.166  Sum_probs=134.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|.-.. +.-..++.+.+++.++++........  ....+.+..+++.+.+..+  ...+.++++++
T Consensus        37 l~D~dG~~ylD~~~g~~~~-~lGh~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p--~~~~~v~f~~S  111 (428)
T PRK07986         37 LILADGRRLVDGMSSWWAA-IHGYNHPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTP--QPLECVFLADS  111 (428)
T ss_pred             EEeCCCCEEEEcchhHHhh-cCCCCCHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence            3445688999998773111 11123478889999888743211111  1123555666776655322  12368999999


Q ss_pred             HHHHHHHHHHHhcC-------CCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCC---CC-CCCH
Q 022213          116 CKQAVEVILSVLAR-------PGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPER---NW-EVDL  170 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~---~~-~~~~  170 (301)
                      +++|.+.+++....       ...+|+...-+|++........ +.             ....++.....   .+ ..|+
T Consensus       112 GsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~  191 (428)
T PRK07986        112 GSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDI  191 (428)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHH
Confidence            99999999986642       2367998888898753222221 11             01122211000   00 1245


Q ss_pred             HHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          171 DAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +.+++.++.  ...+.++.-|  +.-.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++
T Consensus       192 ~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~f-a~~~~gv~PDi~  270 (428)
T PRK07986        192 APFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-ACEHAGIAPDIL  270 (428)
T ss_pred             HHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCee-eecccCCCCCEE
Confidence            667776642  2334445555  444455 4466899999999999999999999997764333322 222233233444


Q ss_pred             EEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          246 TLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       246 ~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                         +++|.++ .| +.+|.++++.        ++++.++.
T Consensus       271 ---t~gK~l~-gG~~p~~av~~~~--------~i~~~~~~  298 (428)
T PRK07986        271 ---CLGKALT-GGTMTLSATLTTR--------EVAETISN  298 (428)
T ss_pred             ---Eechhhh-CCcccCcchhchH--------HHHHHhhc
Confidence               5899974 55 4777777633        46666654

>PRK07481 hypothetical protein; Provisional

Probab=98.99  E-value=6.1e-08  Score=90.26  Aligned_cols=224  Identities=15%  Similarity=0.110  Sum_probs=129.9

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+++.+||+..|.-... --...+.+.+++.+++......... .....+.+..+++.+.+..+. -..+.+++++++
T Consensus        37 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sG  113 (449)
T PRK07481         37 YDIDGKKLLDGVGGLWNVN-VGHNREEVKEAIVRQLDELEYYSTF-DGTTHPRAIELSYELIDMFAP-EGMRRVFFSSGG  113 (449)
T ss_pred             EeCCCCEEEECchhHHhhc-CCCCCHHHHHHHHHHHHhccceecc-cccCCHHHHHHHHHHHHhcCC-CCCCEEEEcCch
Confidence            3446888999977621111 1124567889999988743211100 011235556677766553321 123589999999


Q ss_pred             HHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCC--CCC-CCHHH
Q 022213          117 KQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPER--NWE-VDLDA  172 (301)
Q Consensus       117 ~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~-~~~~~  172 (301)
                      ++|++.+++....       +| .+|+...-+|++........+.             .+..++.....  .+. .|.+.
T Consensus       114 sEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  193 (449)
T PRK07481        114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEE  193 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHH
Confidence            9999999987642       23 5788888889875432222111             11122111000  011 13333


Q ss_pred             H--------Hhhcc---cCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          173 V--------EALAD---KNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       173 l--------~~~~~---~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      +        ++.+.   .+..+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||+...+...+.-+ ....++
T Consensus       194 ~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~g  272 (449)
T PRK07481        194 LARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF-GSRGWG  272 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh-HhhhcC
Confidence            3        33332   12334455555 444566 4577889999999999999999999999875444322 122333


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      -..+++   +++|.++ .| +.+|.+++++
T Consensus       273 v~PDiv---~~gKgl~-gG~~Pi~av~~~~  298 (449)
T PRK07481        273 VKPDIM---CLAKGIT-SGYVPLGATMVNA  298 (449)
T ss_pred             CCCCEE---EEeeccc-CCCcCceEEEEcH
Confidence            344555   5699954 46 5899998843

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.99  E-value=1.8e-08  Score=92.96  Aligned_cols=220  Identities=17%  Similarity=0.124  Sum_probs=129.0

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|.-... --...+.+.+++.++++......+..  ...+....+++.+.+..+  ...+.++++++
T Consensus        34 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~ai~~q~~~~~~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~S  108 (422)
T PRK05630         34 LTLEDGSTVIDAMSSWWSAA-HGHGHPRLKAAAHKQIDTMSHVMFGG--LTHEPAIKLTRKLLNLTD--NGLDHVFYSDS  108 (422)
T ss_pred             EEECCCCEEEEcchhHHHhc-CCCCCHHHHHHHHHHHHhCCCcccCC--cCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence            33556889999987732211 12245788899999987432211111  123445556666654322  12368999999


Q ss_pred             HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCCCC----
Q 022213          116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWEVD----  169 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~~----  169 (301)
                      +++|++.+++....       ++ .+|+...-+|++....+... +.             ....+|.....  ..+    
T Consensus       109 GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~  186 (422)
T PRK05630        109 GSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVR--GSSPQEI  186 (422)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCccc--CCChHHH
Confidence            99999999986542       23 57898888898753322221 10             11222221111  111    


Q ss_pred             ---HHHHHhhcccCccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          170 ---LDAVEALADKNTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       170 ---~~~l~~~~~~~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                         .+.+++.+.++..++ +.-|  ..-.|.. .+.+.++++.++|++||+++|.||++..+...+. ......++-..+
T Consensus       187 ~~~~~~~~~~~~~~iAAv-i~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~gv~PD  264 (422)
T PRK05630        187 SEYLRSLELLIDETVAAI-IIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAAGVTPD  264 (422)
T ss_pred             HHHHHHHHHHHhhceEEE-EEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhcCCCCC
Confidence               233444444334444 4555  5556764 5678999999999999999999999977644332 212222333334


Q ss_pred             EEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      ++   +++|.++ .| ..+|.++++.
T Consensus       265 i~---t~gK~l~-gG~~p~~av~~~~  286 (422)
T PRK05630        265 IM---CVGKALT-GGFMSFAATLCTD  286 (422)
T ss_pred             ee---eeechhh-cCccccceeeccH
Confidence            44   7899853 45 4789988743

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.99  E-value=7.6e-09  Score=92.90  Aligned_cols=214  Identities=18%  Similarity=0.173  Sum_probs=132.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|.-... .-..++.+.+++++++.....  ........+.+.++++.+.+..+  -..++++++++++
T Consensus        12 d~dG~~~lD~~~~~~~~~-lGh~~p~i~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGs   86 (339)
T PF00202_consen   12 DVDGREYLDFMSGYGSVN-LGHNHPEIAEAIAEQANKLNY--VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGS   86 (339)
T ss_dssp             ETTSEEEEESSHHHHTTT-T-BT-HHHHHHHHHHHHHCSS--CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHH
T ss_pred             ECCCCEEEECCCCcccee-cCCCccccchhHHHHhhhccc--ccccceeccchhhhhhhhhhccc--cccceeeeccCch
Confidence            345788999976621111 112346888899988875432  12123345667777777776542  1456899999999


Q ss_pred             HHHHHHHHHhc------C--CCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCCCCCCCCHHH----
Q 022213          118 QAVEVILSVLA------R--PGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPERNWEVDLDA----  172 (301)
Q Consensus       118 ~al~~~~~~l~------~--~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~----  172 (301)
                      +|++.+++...      .  ...+|+...-+|++........+             .....+|.       .+...    
T Consensus        87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~  159 (339)
T PF00202_consen   87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPF-------PDPAADEEE  159 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEET-------TCHHHHHHH
T ss_pred             HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccC-------CccchhhhH
Confidence            99999999876      2  34789999989986432222111             12344443       22222    


Q ss_pred             ------HHhhc---ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          173 ------VEALA---DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       173 ------l~~~~---~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            +++.+   ..+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...++ ......++-.
T Consensus       160 ~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~gv~  238 (339)
T PF00202_consen  160 QACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYGVD  238 (339)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHTSS
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceeccccc
Confidence                  22222   223334555555 333454 45677899999999999999999999999866664 3334445555


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++++   +++|.++ .|+.+|.++++.
T Consensus       239 PDiv---~~gK~l~-gG~p~sav~~~~  261 (339)
T PF00202_consen  239 PDIV---TFGKGLG-GGLPISAVLGSE  261 (339)
T ss_dssp             SSEE---EEEGGGG-TTSSEEEEEEEH
T ss_pred             Cccc---ccccchh-hhhhcccccccc
Confidence            5666   4579965 569999999854

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.98  E-value=1.1e-08  Score=92.68  Aligned_cols=207  Identities=17%  Similarity=0.164  Sum_probs=131.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..-+|||-.-.-.    -.+.+.++++|..    ++ ..|+.+.....|.+.+++++        ..+.++.|..++.+-
T Consensus        40 ~dV~IDLrSDTgT----~apS~~m~aAM~~----GD-D~Y~gdpSv~~Lee~vael~--------G~E~alpthqGRgaE  102 (467)
T TIGR02617        40 EDVFIDLLTDSGT----GAVTQSMQAAMMR----GD-EAYSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAE  102 (467)
T ss_pred             CCeEEECccCCCC----CCCCHHHHHHHHc----CC-cccccCchHHHHHHHHHHHh--------CCceEEECCCCchHH
Confidence            3446777554321    1134566666653    22 25887778899999999998        345688898889999


Q ss_pred             HHHHHHhcC-CCCEEEEcCC-------C-CcchHHHHHhcCceEEEeecC--------CCCCCCCCHHHHHhhccc----
Q 022213          121 EVILSVLAR-PGANVLLPRP-------G-WPYYEGIAQRKQVEVRHFDLL--------PERNWEVDLDAVEALADK----  179 (301)
Q Consensus       121 ~~~~~~l~~-~gd~Vl~~~p-------~-~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----  179 (301)
                      .+++..+++ +||.+++..+       . |......+...|..+..++..        ......+|++++++++++    
T Consensus       103 ~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~  182 (467)
T TIGR02617       103 QIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN  182 (467)
T ss_pred             HHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence            999999998 7887775443       2 222345567778777665321        122346899999999874    


Q ss_pred             CccEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc-c---------cCCCCCCCcc-ccCCCCCEEEE
Q 022213          180 NTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL-T---------FGSIPYTPMG-LFGSIVPVITL  247 (301)
Q Consensus       180 ~~~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~-~---------~~~~~~~~~~-~~~~~~~vi~~  247 (301)
                      +...+...--+| --|..+|.+.++++.++|++||+.++.|.+-..- .         +.+.....+. .+-...+ .+.
T Consensus       183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD-svt  261 (467)
T TIGR02617       183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD-MLA  261 (467)
T ss_pred             CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC-EEE
Confidence            222222221223 4588999999999999999999999999865431 1         2222211111 0011122 455


Q ss_pred             ecCcccCCCC-cceeEEEEeeC
Q 022213          248 GSISKRWLVP-GWRFGWLVTND  268 (301)
Q Consensus       248 ~s~SK~~~~~-G~rvG~~~~~~  268 (301)
                      .|+||.+++| |   |++++++
T Consensus       262 ~slsKglgApvG---g~Lag~d  280 (467)
T TIGR02617       262 MSAKKDAMVPMG---GLLCFKD  280 (467)
T ss_pred             EEcCCCCCCccc---ceEEecc
Confidence            6999998877 4   5566544

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK06917 hypothetical protein; Provisional

Probab=98.97  E-value=1.2e-07  Score=88.18  Aligned_cols=230  Identities=16%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.+||+..|.-... --...+.+.+++.++++.... .+.. ....+.+.++++.+.+..+  ...+.++++++
T Consensus        25 l~D~dG~~ylD~~~g~~~~~-lGh~hp~v~~Ai~~ql~~~~~-~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s   99 (447)
T PRK06917         25 LYDQNGNKYFDGSSGAVTAG-IGHGVKEIADAIKEQAEEVSF-VYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNS   99 (447)
T ss_pred             EEeCCCCEEEECchhHHhcc-CCCCCHHHHHHHHHHHhhCcC-cccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCC
Confidence            33456889999987732111 122457888999999875321 1111 1123556667777755322  12357999999


Q ss_pred             HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--CC-----
Q 022213          116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--WE-----  167 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~-----  167 (301)
                      +++|.+.+++....       +| .+|+...-+|++........ +.            .+..++......  +.     
T Consensus       100 GsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  179 (447)
T PRK06917        100 GSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPT  179 (447)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHH
Confidence            99999999997731       23 67998888998764333221 11            011111110000  00     


Q ss_pred             ---CCHHHHHhhccc---CccEEEEcCC-C-CCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          168 ---VDLDAVEALADK---NTAAMVIINP-G-NPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       168 ---~~~~~l~~~~~~---~~~~v~l~~p-~-nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                         .+++.+++.++.   +..+.++.-| . +--|. ..+.+.+++|.++|++||+++|.||++..+...+..+ ....+
T Consensus       180 ~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~-a~~~~  258 (447)
T PRK06917        180 CQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHW  258 (447)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchh-hHHhc
Confidence               023455666642   2344555556 3 23344 5678899999999999999999999998764444322 12223


Q ss_pred             CCCCCEEEEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHH
Q 022213          239 GSIVPVITLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      +-..+++   +++|.++ .|+ .+|.+++..        ++++.+.
T Consensus       259 gv~PDi~---~~gK~l~-~G~~Pi~a~~~~~--------~i~~~~~  292 (447)
T PRK06917        259 GVEPDIM---TLGKGLG-AGYTPIAATVVSD--------RVMEPIL  292 (447)
T ss_pred             CCCCCEE---Eeeehhc-cCCcceEEEEEcH--------HHHHHHh
Confidence            3334454   6799964 564 899998743        4666554

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.97  E-value=6.3e-08  Score=90.49  Aligned_cols=225  Identities=14%  Similarity=0.059  Sum_probs=134.3

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCC---CCCCCEEE
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYK---LSADDVYV  112 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~---~~~~~i~~  112 (301)
                      +...+++.+||+..|.-... --...+.+.+++.++++.-.  ......-..+.+..+++.+.+..+..   -+.+.+++
T Consensus        58 l~D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~l~--~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f  134 (472)
T PRK08742         58 LVGHDGRRYLDAVSSWWTNL-FGHAEPRIGAAIAAQAGELE--QVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFY  134 (472)
T ss_pred             EEeCCCCEEEEcCccHHhcc-CCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence            44556888999987721110 11245678899988876321  11111112345566777665532210   12358999


Q ss_pred             cCCHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhcC-c------------eEEEeecCCCC--CCCC-
Q 022213          113 TLGCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRKQ-V------------EVRHFDLLPER--NWEV-  168 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~g-~------------~~~~~~~~~~~--~~~~-  168 (301)
                      ++++++|.+.+++....       + ..+|+...-+|++........+ .            .+..++.....  .++. 
T Consensus       135 ~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~  214 (472)
T PRK08742        135 ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQS  214 (472)
T ss_pred             eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCC
Confidence            99999999999987642       2 2679988888987643332221 1            11222221100  0011 


Q ss_pred             -------CHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213          169 -------DLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       169 -------~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                             +++.+++.+..  ...+.++.-|  ..-.|. ..+.+.++++.++|++||+++|.||+...+...+. .....
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e  293 (472)
T PRK08742        215 AEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACE  293 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHH
Confidence                   24556666532  2344455556  455566 56788999999999999999999999998765553 22233


Q ss_pred             ccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          237 LFGSIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      .++-..+++   +++|.++ .| +.+|.+++++
T Consensus       294 ~~gv~PDiv---~~gKgl~-gG~~Plaav~~~~  322 (472)
T PRK08742        294 QAGVMPDLL---CLSKGLT-GGFLPLSAVLATQ  322 (472)
T ss_pred             hcCCCCCEE---EEccccc-CCCCCcceeeccH
Confidence            344445566   5599954 56 4889988743

>PRK07036 hypothetical protein; Provisional

Probab=98.96  E-value=8.8e-08  Score=89.56  Aligned_cols=230  Identities=19%  Similarity=0.183  Sum_probs=133.8

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +...+++.+||+..|.-... --..++.+.+++.+++..... ..+.  ....+.+..+|+.+....+  ...+.+++++
T Consensus        45 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~  119 (466)
T PRK07036         45 VTDADGRRYLDGIGGMWCVN-VGYGREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELAP--GDLNHVFLTT  119 (466)
T ss_pred             EEECCCCEEEECcccHHhhc-CCCCCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence            33456889999987732111 112457888999988874211 1111  0123556667777655322  1235899999


Q ss_pred             CHHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC--CCCCCC--
Q 022213          115 GCKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE--RNWEVD--  169 (301)
Q Consensus       115 g~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~~~--  169 (301)
                      ++++|++.+++....       + ..+|+...-+|++....+... +.            .+..++....  ..++..  
T Consensus       120 sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  199 (466)
T PRK07036        120 GGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEA  199 (466)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChH
Confidence            999999999986531       2 267888888888754332221 11            1222221110  001111  


Q ss_pred             ------HHHHHhhcc---cCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc-c
Q 022213          170 ------LDAVEALAD---KNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-L  237 (301)
Q Consensus       170 ------~~~l~~~~~---~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~-~  237 (301)
                            .+.+++.+.   .+..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||+...+...+.-+ ... .
T Consensus       200 ~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~  278 (466)
T PRK07036        200 AFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF-ASEAV  278 (466)
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhh-hhhhh
Confidence                  233444442   12334455555 444566 4567899999999999999999999998774443211 222 2


Q ss_pred             cCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHH
Q 022213          238 FGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      ++-..+++   +++|.++ .| +.+|.++++.        ++.+.+.
T Consensus       279 ~gv~PDiv---t~gK~l~-gG~~Pi~av~~~~--------~i~~~~~  313 (466)
T PRK07036        279 FGIQPDII---TFAKGLT-SGYQPLGAVIISE--------RLLDVIS  313 (466)
T ss_pred             cCCCCCEE---EEccccc-cCccccEEEEEcH--------HHHHHHh
Confidence            33334455   6799964 56 4899998743        4666554

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.96  E-value=6.3e-08  Score=82.21  Aligned_cols=167  Identities=18%  Similarity=0.250  Sum_probs=110.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE-EcCCCCcchHH----------HHHhcCc
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL-LPRPGWPYYEG----------IAQRKQV  153 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~----------~~~~~g~  153 (301)
                      |-..|.+..|+-+    +....--+.-+.+ +|+||.+++..+++|||+.+ +.-.-|.....          .++..|+
T Consensus        66 GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi  140 (416)
T COG4100          66 GRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI  140 (416)
T ss_pred             chhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence            4455555555554    3222222334444 48999999999999999987 34444544333          3466788


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCC
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSI  230 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~  230 (301)
                      +...+++..+.  .+|.+.++..+++++|.+.+.-. ....--.++.+++++++++.++-  |+++.+|+||++|+-..+
T Consensus       141 ~Y~~v~Lt~~g--kiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~E  218 (416)
T COG4100         141 KYKAVPLTADG--KIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKE  218 (416)
T ss_pred             ceeecccccCC--cccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccC
Confidence            88888886543  49999999999999998877532 22222247778999999998764  689999999999885432


Q ss_pred             CCCCccccCCCCCEEEEecCcccCCCCcc--eeEEEEe
Q 022213          231 PYTPMGLFGSIVPVITLGSISKRWLVPGW--RFGWLVT  266 (301)
Q Consensus       231 ~~~~~~~~~~~~~vi~~~s~SK~~~~~G~--rvG~~~~  266 (301)
                       +..+.   .+   +.-+|+-|+-|. |+  --||+++
T Consensus       219 -Pt~vG---aD---liAGSLIKNpGG-giaktGGYiaG  248 (416)
T COG4100         219 -PTHVG---AD---LIAGSLIKNPGG-GIAKTGGYIAG  248 (416)
T ss_pred             -ccccc---hh---hhccceeeCCCC-ceeeccceeec
Confidence             22221   12   778899998332 21  1277776

>PRK07480 putative aminotransferase; Validated

Probab=98.95  E-value=8.4e-08  Score=89.43  Aligned_cols=222  Identities=18%  Similarity=0.153  Sum_probs=128.7

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +...+++.+||+..|.-... .-...+.+.++++++++....  +.. .....+.+..+|+.+.+..+  ...+++++++
T Consensus        44 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~  118 (456)
T PRK07480         44 LWDSEGNKILDGMAGLWCVN-VGYGRKELADAAARQMRELPY--YNTFFKTTHPPAIELAAKLAEVAP--PGFNHVFFTN  118 (456)
T ss_pred             EEeCCCCEEEEccchHHHhc-CCCCCHHHHHHHHHHHHhcCC--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence            33456889999987721111 112457888999998874321  111 11234556666766655332  1246899999


Q ss_pred             CHHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cce------------EEEeecCCC--CCCCCC--
Q 022213          115 GCKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QVE------------VRHFDLLPE--RNWEVD--  169 (301)
Q Consensus       115 g~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~~------------~~~~~~~~~--~~~~~~--  169 (301)
                      ++++|.+.+++....       +| .+|+...-+|++........ +..            +..++....  ..+..+  
T Consensus       119 SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  198 (456)
T PRK07480        119 SGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPE  198 (456)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChH
Confidence            999999999986632       23 46888888888753222111 110            111111000  000011  


Q ss_pred             ------HHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          170 ------LDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       170 ------~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                            .+.+++.+.+   +..+.++.-| ..-.|.. .+.+.+++|.++|++||+++|.||++..+...+.. .....+
T Consensus       199 ~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~-~a~~~~  277 (456)
T PRK07480        199 EFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW-FGSQHF  277 (456)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch-hhhhhc
Confidence                  2455543321   2333444445 4445664 56778999999999999999999999887544432 222333


Q ss_pred             CCCCCEEEEecCcccCCCCc-ceeEEEEee
Q 022213          239 GSIVPVITLGSISKRWLVPG-WRFGWLVTN  267 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~  267 (301)
                      +-..+++   +++|.++ .| +.+|.++++
T Consensus       278 gv~PDiv---~~gK~l~-gG~~Pi~av~~~  303 (456)
T PRK07480        278 GIKPDLM---TIAKGLT-SGYIPMGAVGVG  303 (456)
T ss_pred             CCCCCee---eeehhhc-cCCccceEEEEc
Confidence            3334455   6799965 46 488999884

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.95  E-value=5e-08  Score=91.08  Aligned_cols=221  Identities=14%  Similarity=0.093  Sum_probs=130.8

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-.. .--..++.+.+++.++++.-..  ........+.+.++++.+.+..+  ...+.++++++++
T Consensus        52 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGs  126 (460)
T PRK06916         52 DVNGNEYYDGVSSIWLN-VHGHQVPELDEAIREQLNKIAH--STLLGLANVPSILLAEKLIEVVP--EGLKKVFYSDSGA  126 (460)
T ss_pred             eCCCCEEEEcchhHHHh-hcCCCCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcH
Confidence            44688889987662110 0123457788999998874211  11101123445556666654322  1235899999999


Q ss_pred             HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC--CCC-------
Q 022213          118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER--NWE-------  167 (301)
Q Consensus       118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~--~~~-------  167 (301)
                      +|.+.+++....       +| .+|+...-+|++....+... +.            ....+|.....  .+.       
T Consensus       127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~  206 (460)
T PRK06916        127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV  206 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence            999999987642       33 67898888898754332222 11            11222211000  001       


Q ss_pred             -CCHHHHHhhccc--CccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          168 -VDLDAVEALADK--NTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       168 -~~~~~l~~~~~~--~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                       .+++.+++.++.  ...+.++.-|  ..-.|.. .+.+.++++.++|++||+++|.||++..+...+..+ ....++-.
T Consensus       207 ~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~-a~~~~gv~  285 (460)
T PRK06916        207 KKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVT  285 (460)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh-HHHhcCCC
Confidence             124556666642  2334455555  4555665 588999999999999999999999998764444321 22233333


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      .+++   +++|.++ .| +.+|.+++++
T Consensus       286 PDiv---~~gK~l~-gG~~Pi~av~~~~  309 (460)
T PRK06916        286 PDIM---TAGKGLT-GGYLPIAITVTTD  309 (460)
T ss_pred             CCee---eeehhhh-cCccccceeeecH
Confidence            4455   6799965 56 5899998843

>PRK07483 hypothetical protein; Provisional

Probab=98.94  E-value=8.1e-08  Score=89.26  Aligned_cols=221  Identities=18%  Similarity=0.148  Sum_probs=129.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-.. .--..++.+.++++++++.....  .......+....+++.+....+  -..+.++++++++
T Consensus        26 D~dG~~ylD~~~g~~~~-~lGh~~p~v~~av~~ql~~~~~~--~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGs  100 (443)
T PRK07483         26 DATGKRYLDASGGAAVS-CLGHSHPRVIAAIHAQIDRLAYA--HTSFFTTEPAEALADRLVAAAP--AGLEHVYFVSGGS  100 (443)
T ss_pred             eCCCCEEEEcCccHhhh-ccCCCCHHHHHHHHHHHHhccCc--cccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcH
Confidence            44688999998772211 11234577889999998743211  1111123455667776655322  1236899999999


Q ss_pred             HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCC-CCC--CC-----
Q 022213          118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPE-RNW--EV-----  168 (301)
Q Consensus       118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~-~~~--~~-----  168 (301)
                      +|.+.+++....       +| .+|+...-+|++........ +.            .+..++.... ...  ..     
T Consensus       101 EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (443)
T PRK07483        101 EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAY  180 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHH
Confidence            999999986642       23 56888888888763222221 11            1111221100 000  00     


Q ss_pred             ---CHHHHHhhccc---CccEEEEcCCCC--Cccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          169 ---DLDAVEALADK---NTAAMVIINPGN--PCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       169 ---~~~~l~~~~~~---~~~~v~l~~p~n--ptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                         .++.+++.+..   +..+.++.-|-.  -.|. ..+.+.++++.++|++||+++|.||+...+...+. ......++
T Consensus       181 ~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g  259 (443)
T PRK07483        181 GQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEEDG  259 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhcC
Confidence               02455654431   233445555632  2354 56788999999999999999999999998754442 22222333


Q ss_pred             CCCCEEEEecCcccCCCCcc-eeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPGW-RFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~-rvG~~~~~~  268 (301)
                      -..+++   +++|.+ ..|+ .+|.+++++
T Consensus       260 v~PDiv---~~gK~l-~gG~~Pi~av~~~~  285 (443)
T PRK07483        260 VAPDLV---TIAKGL-GAGYQPIGAVLASD  285 (443)
T ss_pred             CCCCee---eehhhh-ccCccccEEEEEcH
Confidence            344556   669995 4575 899998843

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.93  E-value=6.3e-08  Score=90.45  Aligned_cols=223  Identities=13%  Similarity=0.049  Sum_probs=133.3

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|.-... .-..++.+.+++.++++....  ........+.+..+++.+.+..+  ...+.++++++
T Consensus        41 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s  115 (466)
T PRK07030         41 LEDFEGKRYLDAVSSWWVNV-FGHANPRINQRIKDQVDQLEH--VILAGFSHEPVIELSERLVKITP--PGLSRCFYADN  115 (466)
T ss_pred             EEECCCCEEEEcchhHHhhc-CCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCC
Confidence            44556889999977732111 112456788999998874321  11111223555666666654221  12358999999


Q ss_pred             HHHHHHHHHHHhcC-------C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCC--CCC-----
Q 022213          116 CKQAVEVILSVLAR-------P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPER--NWE-----  167 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~--~~~-----  167 (301)
                      +++|.+.+++....       + ..+|+...-+|++........ +.            .+..+|.....  .++     
T Consensus       116 GsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~  195 (466)
T PRK07030        116 GSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEE  195 (466)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHH
Confidence            99999999987632       2 357888888898764333222 11            11122211100  001     


Q ss_pred             ---CCHHHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          168 ---VDLDAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       168 ---~~~~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                         -+++.+++.++.  ...+.++.-|  ..-.|. ..+.+.++++.++|++||+++|.||++..+...+. ......++
T Consensus       196 ~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~g  274 (466)
T PRK07030        196 HSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACEQAG  274 (466)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHHhcC
Confidence               124556666642  2334455555  444466 55678999999999999999999999988755443 22223334


Q ss_pred             CCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      -..+++   +++|.++ .| +.+|.++++.
T Consensus       275 v~PDiv---~~gKgl~-gG~~Pi~av~~~~  300 (466)
T PRK07030        275 IRPDFL---CLSKALT-GGYLPLAAVLTTD  300 (466)
T ss_pred             CCCCEE---eeehhcc-CCcccceEEEecH
Confidence            444566   5599965 57 4899998743

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.93  E-value=8.1e-08  Score=84.67  Aligned_cols=229  Identities=15%  Similarity=0.152  Sum_probs=142.1

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-----CCCC-CCCCCCCHHHHHHHHH
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-----KFNC-YATNSGIPPARRAIAD   95 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-----~~~~-Y~~~~g~~~lr~~ia~   95 (301)
                      ...|+++++.....     .+..|+|=.-+.      -..+.+.+++...+.+.     ...+ |+--+...++.+...+
T Consensus        11 d~~i~~~i~~e~~r-----q~~~ieLIASEN------~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laie   79 (413)
T COG0112          11 DPEIFEAIQQELER-----QREHIELIASEN------FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIE   79 (413)
T ss_pred             CHHHHHHHHHHHHH-----Hhhceeeeeccc------cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHH
Confidence            34566666544332     346788854442      24567888887776531     1112 3333334555555555


Q ss_pred             HHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH---HHHhcC--ceEEEeecCCCCCCCCCH
Q 022213           96 YLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQ--VEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g--~~~~~~~~~~~~~~~~~~  170 (301)
                      ..++-++  .+--||-..+| ++|...++.+|++|||+|+-.+-.+.++..   -+...|  .+.+.++++++ +..+|.
T Consensus        80 rak~LFg--a~~anVQPhSG-s~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDy  155 (413)
T COG0112          80 RAKKLFG--AEYANVQPHSG-SQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDY  155 (413)
T ss_pred             HHHHHhC--CCccccCCCCc-hHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCH
Confidence            5555444  33445555555 688889999999999999977766665422   122223  35555666544 456999


Q ss_pred             HHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEe
Q 022213          171 DAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLG  248 (301)
Q Consensus       171 ~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~  248 (301)
                      |++++.+.+ ++|.++.-.-..|  ..++   ++++.++|.+-|.++++|-++.. ++-++..+.|+..-+     |+.+
T Consensus       156 D~~~k~a~e~kPK~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~Ad-----vVTt  225 (413)
T COG0112         156 DEVEKLAKEVKPKLIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHAD-----VVTT  225 (413)
T ss_pred             HHHHHHHHHhCCCEEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccc-----eEeC
Confidence            999997765 6776654332222  3455   66666667788999999999874 344454444544311     8899


Q ss_pred             cCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          249 SISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       249 s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |++|+  ++|-|-|.+...+       +++.+++..
T Consensus       226 TTHKT--lrGPrGG~Il~~~-------eel~kkin~  252 (413)
T COG0112         226 TTHKT--LRGPRGGIILTND-------EELAKKINS  252 (413)
T ss_pred             CcccC--CCCCCceEEEecc-------HHHHHHhhh
Confidence            99999  5777888887643       357777765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.93  E-value=3e-08  Score=91.72  Aligned_cols=228  Identities=15%  Similarity=0.168  Sum_probs=129.6

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++|+..|.-...- -..++.+.+++.+++++.........  ..+....+++.+.+..+  ..-+.++++++++
T Consensus        41 d~dG~~ylD~~~g~~~~~l-Gh~~p~v~~ai~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~~~v~f~~sGs  115 (427)
T TIGR00508        41 LDDGRRLIDGMSSWWAAIH-GYNHPRLNAAAQKQIDKMSHVMFGGF--THKPAIELCQKLVKMTP--NALDCVFLADSGS  115 (427)
T ss_pred             eCCCCEEEEccchHHHhcC-CCCCHHHHHHHHHHHHhcCCcccccc--CCHHHHHHHHHHHhhCC--CCCCEEEEeCCcH
Confidence            4468899999877321111 13456888899888874321111000  11233445555544222  1236899999999


Q ss_pred             HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cce-------------EEEeecCCCCCCC-----CCH
Q 022213          118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QVE-------------VRHFDLLPERNWE-----VDL  170 (301)
Q Consensus       118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~~-------------~~~~~~~~~~~~~-----~~~  170 (301)
                      +|++.+++....       +| .+|+...-+|++....+... +..             ...++. +...+.     .++
T Consensus       116 eA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~  194 (427)
T TIGR00508       116 VAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPA-PQNRFDEEWNEEAI  194 (427)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCC-CCccccchhHHHHH
Confidence            999999886542       23 67998888888753322221 211             011111 001110     135


Q ss_pred             HHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          171 DAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +++++.+..  ...+.++.-|  +.-.|. ..+.+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++
T Consensus       195 ~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~-~~~~~~v~pDi~  273 (427)
T TIGR00508       195 TPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF-ACEHAGVVPDIL  273 (427)
T ss_pred             HHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc-hhhhcCCCCCEE
Confidence            566666542  2344555555  444455 4578999999999999999999999997764444322 222232233344


Q ss_pred             EEecCcccCCCCcc-eeEEEEeeCCCCcccchhHHHHHHh
Q 022213          246 TLGSISKRWLVPGW-RFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       246 ~~~s~SK~~~~~G~-rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                         +++|.+ ..|+ -++.++++        +++++.++.
T Consensus       274 ---~~gK~l-~gG~~p~~a~~~~--------~~~~~~~~~  301 (427)
T TIGR00508       274 ---CVGKAL-TGGYMTLSATVTT--------DKVAQTISS  301 (427)
T ss_pred             ---Eechhh-hcCcccceEEEEc--------HHHHHHHhc
Confidence               379997 4564 56666653        246666653

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.92  E-value=1.3e-07  Score=88.29  Aligned_cols=223  Identities=16%  Similarity=0.121  Sum_probs=131.4

Q ss_pred             ccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEc-C
Q 022213           37 NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVT-L  114 (301)
Q Consensus        37 ~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t-~  114 (301)
                      ...+++.+||+..|.-... .-..++.+.+++++++....  .+.......+.+.++++.+....+.... .+.++++ +
T Consensus        58 ~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~  134 (464)
T PRK06938         58 EDVEGRQFIDCLAGAGTLA-LGHNHPVVIEAIQQVLADEL--PLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGP  134 (464)
T ss_pred             EeCCCCEEEEccCCccccc-cCCCCHHHHHHHHHHHHhhh--cccccccCCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence            3446888999977732211 12345788899999886322  1111111234555566665442221111 1356564 7


Q ss_pred             CHHHHHHHHHHHhcC-C-CCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCCCCC--C--------CCC
Q 022213          115 GCKQAVEVILSVLAR-P-GANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLPERN--W--------EVD  169 (301)
Q Consensus       115 g~~~al~~~~~~l~~-~-gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~--------~~~  169 (301)
                      ++++|.+.+++.... . ..+|+...-+|++........ +.            .+..++......  +        ..+
T Consensus       135 SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  214 (464)
T PRK06938        135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN  214 (464)
T ss_pred             CcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHH
Confidence            999999999987642 2 367888888888764332221 10            122232211100  0        012


Q ss_pred             HHHHHhhccc-----CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          170 LDAVEALADK-----NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       170 ~~~l~~~~~~-----~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                      .+.+++.+.+     ...+.++.-| ..-.|.+ .+.+.++++.++|++||+++|.||+...+...+. ......++-..
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~gv~P  293 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAGIIP  293 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhcCCCC
Confidence            5667776653     1234555566 3334654 5689999999999999999999999998755443 22223344445


Q ss_pred             CEEEEecCcccCCCCcceeEEEEee
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +++   +++|.++ .|+.+|.+++.
T Consensus       294 Div---~~gKglg-gG~PlsAv~~~  314 (464)
T PRK06938        294 DVV---VLSKAIG-GSLPLAVVVYR  314 (464)
T ss_pred             CEE---Eeecccc-CCCceEEEeeh
Confidence            566   5699965 68999999874

>PRK06148 hypothetical protein; Provisional

Probab=98.92  E-value=7.4e-08  Score=97.81  Aligned_cols=217  Identities=15%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.++++..|...   --...+.+.+++.+++......   . ....+.+..+|+.+....+  -..+.++++++++
T Consensus       620 D~dG~~ylD~~~g~~~---lGH~hp~v~~Ai~~q~~~l~~~---~-~~~~~~~~~lAe~L~~~~p--~~~~~v~f~nSGs  690 (1013)
T PRK06148        620 DNRGRAYLDCFNNVCH---VGHAHPRVVAAAARQAARLNTN---T-RYLHDAIVAYAERLTATLP--DGLTVAFFVNSGS  690 (1013)
T ss_pred             ECCCCEEEEcccChhh---cCCCCHHHHHHHHHHHhhcCCc---C-CcCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcH
Confidence            3457888998777421   1235678899999988743111   1 1223455566666655322  1236799999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhc-Cc------------eEEEeecCC--CCCCCC-C-------HHH
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRK-QV------------EVRHFDLLP--ERNWEV-D-------LDA  172 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-g~------------~~~~~~~~~--~~~~~~-~-------~~~  172 (301)
                      ||.+.+++....  ...+|+...-+|++........ +.            .+..++...  ...+.. +       .+.
T Consensus       691 EA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  770 (1013)
T PRK06148        691 EANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAES  770 (1013)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHH
Confidence            999999987753  3467888888888753222111 10            011111100  001111 1       123


Q ss_pred             HHhhcc---c--CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          173 VEALAD---K--NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       173 l~~~~~---~--~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +++.++   .  +..+.++.-| ..-.|. ..+.+.++++.++|++||+++|.||++..+...+........++-..+++
T Consensus       771 l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDiv  850 (1013)
T PRK06148        771 VAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIV  850 (1013)
T ss_pred             HHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCccee
Confidence            444432   1  2334455555 333344 66788999999999999999999999988755443333333344344555


Q ss_pred             EEecCcccCCCCcceeEEEEee
Q 022213          246 TLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                         +++|.++ .|+.+|.+++.
T Consensus       851 ---t~gK~lg-gG~Plgav~~~  868 (1013)
T PRK06148        851 ---TMGKPIG-NGHPMGAVVTT  868 (1013)
T ss_pred             ---eeccccc-CCcceEEEEEc
Confidence               6799965 68999999984

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.91  E-value=1.8e-07  Score=83.34  Aligned_cols=201  Identities=19%  Similarity=0.158  Sum_probs=138.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHH-HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE---
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPAR-RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL---  135 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr-~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl---  135 (301)
                      ..+++.+++..+++......|.-..|...-| ..+++.+.   + -...+.++++++.+.|+..++.++.+++..|+   
T Consensus        39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~---~-~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g  114 (395)
T COG1921          39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLC---G-LTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRG  114 (395)
T ss_pred             CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHh---c-ccchhheeeECCcHHHHHHHHhhhccCCeEEEEcc
Confidence            3467888888888765422554433432222 24455542   2 23567899999999999999999987554444   


Q ss_pred             --EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCC-CcccCCCHHHHHHHHHHHHhC
Q 022213          136 --LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGN-PCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 --~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~  212 (301)
                        ++ ++.+.....++..|.+++++....    ..+..+++.++.+++..++-.+-+| +.-..++   .++++++|+++
T Consensus       115 ~lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~  186 (395)
T COG1921         115 ELVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLS---EEELVEIAHEK  186 (395)
T ss_pred             cccc-CCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeecccccccccc---HHHHHHHHHHc
Confidence              33 577788999999999999886532    2678899999999998876655544 3333455   67788889999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      |+++|+|.+..............-..+.+   ++++|--|.++  |-+-|.+++.        .+++.++++.
T Consensus       187 ~lpvivD~aSg~~v~~e~~l~~~la~GaD---LV~~SgdKllg--GPqaGii~Gk--------KelI~~lq~~  246 (395)
T COG1921         187 GLPVIVDLASGALVDKEPDLREALALGAD---LVSFSGDKLLG--GPQAGIIVGK--------KELIEKLQSH  246 (395)
T ss_pred             CCCEEEecCCccccccccchhHHHhcCCC---EEEEecchhcC--CCccceEech--------HHHHHHHHhh
Confidence            99999999998765422222222222222   88889999854  6668888873        3688888765

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.90  E-value=1.3e-07  Score=87.51  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=127.4

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...+++.++|+..|.-... .-...+.+.+++++++++...  +.......+.+..+++.+....+  ...+.++++++
T Consensus        38 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~s  112 (429)
T PRK06173         38 ITLKDGRRLIDGMSSWWAAL-HGYNHPRLNAAATNQLAKMSH--IMFGGFTHEPAVELAQKLLEILP--PSLNKIFFADS  112 (429)
T ss_pred             EEcCCCCEEEEccchHHhcc-CCCCCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCC
Confidence            33456889999977621110 112347888899988874321  11111123444556666654222  13468999999


Q ss_pred             HHHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCCCCCCC-----C
Q 022213          116 CKQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLPERNWE-----V  168 (301)
Q Consensus       116 ~~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~-----~  168 (301)
                      +++|++.+++....       +| .+|+...-+|++........ +.             ....++... ..+.     .
T Consensus       113 GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~  191 (429)
T PRK06173        113 GSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-IKFGEEWNDE  191 (429)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-cccchhHHHH
Confidence            99999999887642       23 57888888888742111111 10             011222110 0000     1


Q ss_pred             CHHHHHhhccc--CccEEEEcCC--CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          169 DLDAVEALADK--NTAAMVIINP--GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       169 ~~~~l~~~~~~--~~~~v~l~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      +++.+++.+..  ...+.++.-|  +.-.|.. .+.+.++++.++|++||+++|+||++..+...+..+ ....++-..+
T Consensus       192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PD  270 (429)
T PRK06173        192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF-ALEHAGVVPD  270 (429)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcch-HHHhcCCCCC
Confidence            35556666642  2344455555  5555665 688999999999999999999999997754333321 1222332333


Q ss_pred             EEEEecCcccCCCCc-ceeEEEEee
Q 022213          244 VITLGSISKRWLVPG-WRFGWLVTN  267 (301)
Q Consensus       244 vi~~~s~SK~~~~~G-~rvG~~~~~  267 (301)
                      ++   +++|.++ .| +-+|-++++
T Consensus       271 iv---~~gK~l~-gG~~p~~a~~~~  291 (429)
T PRK06173        271 IM---CIGKALT-GGYLTLSATITT  291 (429)
T ss_pred             EE---Eeehhhh-CCccccceEEec
Confidence            44   3899974 55 356777653

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.89  E-value=3.2e-08  Score=89.45  Aligned_cols=223  Identities=17%  Similarity=0.160  Sum_probs=120.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC------CCCCCHHHHHHHHHHHhhhCCCCCCCCCEE---E
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA------TNSGIPPARRAIADYLSRDLPYKLSADDVY---V  112 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~---~  112 (301)
                      ..-|+|-..+.      .+.+.+.+++...+.+.-...|+      -...+.++.+...+...+-++  +++++-.   =
T Consensus        20 ~~~l~LiaSEN------~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~--~~~~~w~anvq   91 (399)
T PF00464_consen   20 RSTLNLIASEN------YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG--AEPKEWYANVQ   91 (399)
T ss_dssp             HHSEE-CTT-----------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE--
T ss_pred             hcCccccCccc------ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC--CCcccceEEee
Confidence            56688866653      23456767666555432111121      111233444333344433343  3433322   2


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH---HHH-------HhcCceEEEeecCCCCCCCCCHHHHHhhccc-Cc
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYE---GIA-------QRKQVEVRHFDLLPERNWEVDLDAVEALADK-NT  181 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~---~~~-------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  181 (301)
                      ..+++.|...++.+|++|||+|+..++...++.   ...       .....+.+.++++++ ...+|.+++++.+++ ++
T Consensus        92 p~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kP  170 (399)
T PF00464_consen   92 PHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKP  170 (399)
T ss_dssp             -SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--
T ss_pred             cCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCC
Confidence            567789999999999999999998877665432   111       123346777777654 467999999998865 77


Q ss_pred             cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      ++|++..-..|-  .++   ++++.++|.+.|.+++.|-++.. ++-++..+.|+.. . +   |+.+|++|+  ++|-|
T Consensus       171 klIi~G~S~y~~--~~d---~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-A-D---vvt~sThKt--l~GPr  238 (399)
T PF00464_consen  171 KLIICGASSYPR--PID---FKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-A-D---VVTGSTHKT--LRGPR  238 (399)
T ss_dssp             SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-S-S---EEEEESSGG--G-SSS
T ss_pred             CEEEECchhccC--ccC---HHHHHHHHHhcCcEEEecccccccceehheecCcccc-c-e---EEEeecccc--ccccC
Confidence            877765444332  234   67777778899999999999873 4445555555543 2 2   889999999  57888


Q ss_pred             eEEEEee------CCCCcccchhHHHHHHhh
Q 022213          261 FGWLVTN------DPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       261 vG~~~~~------~~~~~~~~~~~~~~~~~~  285 (301)
                      -|.++..      +.....-++++.+++.+.
T Consensus       239 ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a  269 (399)
T PF00464_consen  239 GGIILTNKGSKNVDKKGKEIDEELAEKIDSA  269 (399)
T ss_dssp             -EEEEES-SEEEE-TTS-EEEHHHHHHHHHH
T ss_pred             ceEEEEcCCccccCCcccccHHHHHHHhccc
Confidence            8888875      011110124677777664

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.88  E-value=6.7e-08  Score=95.06  Aligned_cols=174  Identities=17%  Similarity=0.158  Sum_probs=118.3

Q ss_pred             CCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC-CHHHHHHHHHHHhc----C---C-CCEEEEcCCCCcchH
Q 022213           78 NCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL-GCKQAVEVILSVLA----R---P-GANVLLPRPGWPYYE  145 (301)
Q Consensus        78 ~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~-g~~~al~~~~~~l~----~---~-gd~Vl~~~p~~~~~~  145 (301)
                      +-|.|   .+|..++..++.+++.+-.|    .+.+.+-. ++.++-.+.+.++.    .   + .++|+++.-.|....
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp  605 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP  605 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence            46776   77887777777777766433    33344444 44444445555543    1   2 367889988886555


Q ss_pred             HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC
Q 022213          146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY  222 (301)
Q Consensus       146 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y  222 (301)
                      ..+...|++++.++.+.+  ..+|+++|++.++   .++.++.+++|++-.+..   +.+++|+++|+++|+++++|.++
T Consensus       606 asa~~~GieVv~Vp~D~~--G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA~  680 (954)
T PRK12566        606 ASAQMAGMRVVIVECDPD--GNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGAN  680 (954)
T ss_pred             HHHHHCCCEEEEeccCCC--CCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEeeC
Confidence            567788999999998643  3699999999986   456667778888766553   44999999999999999999998


Q ss_pred             cccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEe
Q 022213          223 GHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVT  266 (301)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~  266 (301)
                      ..-..   .......++-+   |+.+++.|+|+.|    |.-+|.+.+
T Consensus       681 ~~a~~---~l~~Pg~~GAD---i~~~s~HKtf~~P~G~GGP~vG~iav  722 (954)
T PRK12566        681 LNAQV---GLARPADIGAD---VSHMNLHKTFCIPHGGGGPGMGPIGV  722 (954)
T ss_pred             hhhcc---CCCChhhcCCC---EEEecCCcccCcCccCCCCccchhhh
Confidence            63222   11212333333   8889999988644    555666554

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.87  E-value=6.8e-08  Score=89.55  Aligned_cols=213  Identities=15%  Similarity=0.120  Sum_probs=120.8

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +...++..+||+..|.-... --...+.+.+++.++++...  .|...   ...+-.+++.+.+..+   ..+.++++++
T Consensus        42 l~D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~~~--~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~s  112 (431)
T PRK06209         42 VWDVDGNEYIEYGMGLRAVG-LGHAYPPVVEAVREALQDGC--NFTRP---SAIELDAAESFLELID---GADMVKFCKN  112 (431)
T ss_pred             EEeCCCCEEEEccccccchh-cCCCCHHHHHHHHHHHHhCc--CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecC
Confidence            33456888999987732111 12245688899999987533  23221   2233344554443221   1368999999


Q ss_pred             HHHHHHHHHHHhcC-CC-CEEEEc-CCCCcchHHHH-----HhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEE
Q 022213          116 CKQAVEVILSVLAR-PG-ANVLLP-RPGWPYYEGIA-----QRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMV  185 (301)
Q Consensus       116 ~~~al~~~~~~l~~-~g-d~Vl~~-~p~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~  185 (301)
                      +++|.+.+++.... .| .+|+.. .-+|.++....     ...+......+. ...-.-.|++.+++.++.  +..+.+
T Consensus       113 GseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~aav  191 (431)
T PRK06209        113 GSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSAL-TVTFRYNDIASLEALFEDHPGRIACV  191 (431)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcc-ccccCCCCHHHHHHHHHhCCCCEEEE
Confidence            99999999986642 23 455544 22332211000     000100000000 000001378888887753  234455


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-cCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-FGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      +.-|-  .|...+.+.+++|.++|++||+++|+||++..+.+..   ..... ++-..++   .+++|.++ .|+.+|.+
T Consensus       192 i~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~gv~PDi---~t~gK~lg-gG~p~~av  262 (431)
T PRK06209        192 ILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLYGIVPDL---SCFGKALG-NGFAVSAL  262 (431)
T ss_pred             EEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHhCCCcce---eeehhhhc-CCcccEEE
Confidence            55553  3447778899999999999999999999987654321   11111 2222233   47899976 46888999


Q ss_pred             Eee
Q 022213          265 VTN  267 (301)
Q Consensus       265 ~~~  267 (301)
                      +++
T Consensus       263 ~~~  265 (431)
T PRK06209        263 AGK  265 (431)
T ss_pred             EEH
Confidence            884

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.83  E-value=6.2e-07  Score=83.72  Aligned_cols=224  Identities=19%  Similarity=0.137  Sum_probs=129.2

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcC
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTL  114 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~  114 (301)
                      +...+++.+||+..|--... --..++.+.+++++++.....  +.......+.+..+|+.+....+..... ..+++++
T Consensus        52 l~D~dG~~ylD~~~g~~~~~-lGH~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~  128 (459)
T PRK06931         52 VTDVEGNQYLDCLAGAGTLA-LGHNHPDVLQSIQDVLTSGLP--LHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGP  128 (459)
T ss_pred             EEeCCCCEEEEcccchhhcc-CCCCCHHHHHHHHHHHhhhcc--ccccccCCHHHHHHHHHHHHhCCCccccceEEEeCC
Confidence            33456889999988732211 123456888999988864221  1111122456666777775532211011 1346668


Q ss_pred             CHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCC--CC----CCHHHH
Q 022213          115 GCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERN--WE----VDLDAV  173 (301)
Q Consensus       115 g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~----~~~~~l  173 (301)
                      ++++|.+.+++....  ..++|+...-+|++..........             .+..++......  +.    -+.+.+
T Consensus       129 SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (459)
T PRK06931        129 SGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKAL  208 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence            999999999987642  346898888899876544432211             122222211000  00    012222


Q ss_pred             ----Hhhccc-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          174 ----EALADK-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       174 ----~~~~~~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                          ++.+..     ...+.++.-| ..-.|. ..+.+.++++-++|++||+++|.||+...+...+. ......++-.+
T Consensus       209 ~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~gv~P  287 (459)
T PRK06931        209 TYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEP  287 (459)
T ss_pred             HHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcCCCC
Confidence                333321     2234455555 333455 45788999999999999999999999998754443 22233344444


Q ss_pred             CEEEEecCcccCCCCcceeEEEEee
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +++   +++|.++ .|+.+|.+++.
T Consensus       288 Div---t~gK~l~-gG~Pi~av~~~  308 (459)
T PRK06931        288 DII---VMSKAVG-GGLPLAVLGIK  308 (459)
T ss_pred             CEE---Eeccccc-CCcceeeeeeH
Confidence            566   5699965 57999987763

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.1e-07  Score=81.67  Aligned_cols=203  Identities=16%  Similarity=0.136  Sum_probs=136.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ++.+++||+..+..   .|...+++.+.+...++.-.      -.=|++-.=+.++.+.||+|+        ..++-++-
T Consensus        92 ~G~~~~N~aS~NfL---~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~--------G~E~aivY  160 (467)
T KOG1358|consen   92 DGKDVLNFASANFL---GLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM--------GTEDAIVY  160 (467)
T ss_pred             cCceeecccchhhh---hhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh--------CCcceeee
Confidence            57889999988853   45666778887777776311      112555444678999999998        33444444


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc------------
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT------------  181 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------  181 (301)
                      +-+..++..++.++++.||.|.+.+-........++...-.+.++..       .|.+.++..+.+++            
T Consensus       161 s~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~  233 (467)
T KOG1358|consen  161 SYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALT  233 (467)
T ss_pred             ccccchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccc
Confidence            45578888999999999999998877766666655655555555543       45666666543211            


Q ss_pred             cE-EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          182 AA-MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       182 ~~-v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      +. +++..---++|.+.+   +.+|+++..||.+.+|.||.|+.-..+.  .........+..+--++++|++-+++..|
T Consensus       234 Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G  310 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG  310 (467)
T ss_pred             eEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC
Confidence            22 334445567999999   8889999999999999999999765542  22222222221111288888888876666


Q ss_pred             ceeEEEEe
Q 022213          259 WRFGWLVT  266 (301)
Q Consensus       259 ~rvG~~~~  266 (301)
                         |+.++
T Consensus       311 ---gFc~G  315 (467)
T KOG1358|consen  311 ---GFCAG  315 (467)
T ss_pred             ---ceeec
Confidence               77766

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.79  E-value=4.3e-07  Score=81.55  Aligned_cols=196  Identities=14%  Similarity=0.066  Sum_probs=120.1

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ..++|+.| |.     ..|+.|.+++++.+-+..        ..++.+  -..++.+.+.+.+++.++++-+.+=+++..
T Consensus         4 ~~~nF~aG-Pa-----~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~G   75 (364)
T PRK12462          4 NQLNFSGG-PG-----ALPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDEYGVVFLQG   75 (364)
T ss_pred             ccceecCC-Cc-----CCCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence            36788888 32     456788888876665321        112221  123444444445554444322222345666


Q ss_pred             CHHHHHHHHHHHhcCCCCEEE-EcCCCCcc--hHHHHHhcCceEEEeecCCCCC--CCCCHHHHHhhcccCccEEEEcCC
Q 022213          115 GCKQAVEVILSVLARPGANVL-LPRPGWPY--YEGIAQRKQVEVRHFDLLPERN--WEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl-~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      |+|.+++++...|+.+||+++ +..-++.+  +...++.+| ++..+......+  ..++++.++  ++++.+.+.+++-
T Consensus        76 ggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~d~~~v~~t~N  152 (364)
T PRK12462         76 GSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDARAPFRHYVSN  152 (364)
T ss_pred             cHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCCCCcEEEEccC
Confidence            799999999999999999765 44444443  345556666 444332211112  234555552  2334677778888


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ...||+..+        ++.+.++.++|+|.+...+.    .+..+..++     +++.|.-|++|-||  ++.+++++
T Consensus       153 ETstGv~~~--------~~~~~~~~llvvD~sS~~~s----~pid~~~~d-----vi~agsQKnlgP~G--ltvvivs~  212 (364)
T PRK12462        153 ETVEGLQFP--------DAAGLPDSPLIADMSSDFMS----RPFDVEAYG-----MVYAHAQKNLGPAG--VTVAIIRR  212 (364)
T ss_pred             CCCceEecC--------cccccCCCeEEEEcCchhhC----CCCChHHcc-----EEEeeccccCCCCc--eEEEEECH
Confidence            889999986        22334689999999988733    444555552     88889999999777  66777654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.7e-08  Score=89.93  Aligned_cols=212  Identities=15%  Similarity=0.139  Sum_probs=133.2

Q ss_pred             CCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      .++.+.+.+++.+.--.  ..-..-+...-+.++.+.+|+|+    |   .++-+++.-| .......+-+++.||--|+
T Consensus       154 g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~----g---~e~a~vF~mG-f~TNs~~~p~l~~~gsLIi  225 (519)
T KOG1357|consen  154 GPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFL----G---VEDAIVFSMG-FATNSMNIPSLLGKGSLII  225 (519)
T ss_pred             CcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhc----C---CcceEEEecc-ccccccCcceeecCCccee
Confidence            35556666666543211  00111111122345666666665    2   2345555544 5556667778889999999


Q ss_pred             EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------------CccE-EEEcCCCCCcccCCCHHHH
Q 022213          136 LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------------NTAA-MVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       136 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~-v~l~~p~nptG~~~~~~~l  202 (301)
                      -.+..|.+...-++..|+.+.....       -|...||+.+++            ..+. +++..-...-|.+..   +
T Consensus       226 SDelNHaSi~~GaRLSgAtiRVfkH-------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---L  295 (519)
T KOG1357|consen  226 SDELNHASLITGARLSGATTRVFRH-------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---L  295 (519)
T ss_pred             eccccchheeccccccCceEEEEec-------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---c
Confidence            9999999888888888888877765       244455554431            1233 333444556777877   8


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc---CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~---~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      .+++.+++++..+++.||+++--..+. .-..+..+   ++.+-.|.+++|+|+|++.|   ||+.+++        +++
T Consensus       296 p~vvalkkkykayl~lDEAHSiGA~g~-tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--------~li  363 (519)
T KOG1357|consen  296 PEVVALKKKYKAYLYLDEAHSIGAMGA-TGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--------ELI  363 (519)
T ss_pred             HHHHHhhccccEEEEeeccccccccCC-CCcceeeccCCCchhheeecceehhhccccc---ceecCcH--------HHH
Confidence            888899999999999999999765532 11122222   22233599999999999998   9998854        488


Q ss_pred             HHHHhhhcc----cCCCccccccc
Q 022213          280 DSIKDCLSI----YSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~----~~~~~~~~q~~  299 (301)
                      +.++.....    .+.++++.|+.
T Consensus       364 d~lrt~s~~~~yat~~sppvaqq~  387 (519)
T KOG1357|consen  364 DYLRTPSPSALYATSLSPPVAQQI  387 (519)
T ss_pred             hhhccCCCceeecccCChHHHHHH
Confidence            888776431    22445555543

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.79  E-value=2.7e-07  Score=92.44  Aligned_cols=161  Identities=18%  Similarity=0.219  Sum_probs=114.4

Q ss_pred             CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CC--CCEEEEcCCCCcch
Q 022213           77 FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RP--GANVLLPRPGWPYY  144 (301)
Q Consensus        77 ~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~--gd~Vl~~~p~~~~~  144 (301)
                      +..|.|-+     |    +.++++.++++.      +++..|+.+..++|.+.+.++.++. .+  +|+|++++..|+..
T Consensus       105 ~t~ytPyQ~EisQG~Leal~~~Qt~la~Lt------G~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~  178 (954)
T PRK05367        105 YTAYTPYQPEISQGRLEALLNFQTMVADLT------GLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQT  178 (954)
T ss_pred             hhccCCCChHHHHHHHHHHHHHHHHHHHHH------CCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHH
Confidence            55676633     3    345666677776      5788899999999999998888873 44  49999999999976


Q ss_pred             HHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          145 EGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       145 ~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      ...    ++..|++++.++...  +  .+        ++++.++++.+| |-+|.+.+   +++|+++|+++|+++++|.
T Consensus       179 ~~v~~t~a~~~G~ev~~~~~~~--d--~~--------~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda  242 (954)
T PRK05367        179 LDVLRTRAEPLGIEVVVGDAAK--A--LD--------HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAA  242 (954)
T ss_pred             HHHHHHHHHhCCCEEEEecCcc--C--CC--------cccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEe
Confidence            544    356799999887632  1  11        223444555555 67999998   9999999999999999987


Q ss_pred             CCcccccCCCCCCCccccCCCCCEEEEecCccc-----CCCCcceeEEEEeeC
Q 022213          221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR-----WLVPGWRFGWLVTND  268 (301)
Q Consensus       221 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~-----~~~~G~rvG~~~~~~  268 (301)
                      ....+...    .+...++-+   |++++..|+     ||.||  .|++.+.+
T Consensus       243 ~~~Al~~l----~~pge~GaD---i~vgs~qkfg~P~g~GGP~--aGflavr~  286 (954)
T PRK05367        243 DLLALTLL----TPPGEMGAD---IAVGSAQRFGVPMGFGGPH--AAYFAVRD  286 (954)
T ss_pred             hhhhccCC----CChhhcCCC---EEEeeCcccCCCCCCCCCC--EEEEEECH
Confidence            55333221    123344433   888899997     66665  89998843

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.74  E-value=4.4e-07  Score=90.76  Aligned_cols=180  Identities=18%  Similarity=0.160  Sum_probs=117.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCC-----CC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATN-----SG----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-  128 (301)
                      ..|..+.+.+.+...  .+..|+|-     +|    +.++++.++++.      +++++++.++.++|.+.+.++.++. 
T Consensus       116 ~~P~~v~~~i~~~~~--~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt------G~~~anaSL~d~aTAaaea~~~a~~~  187 (993)
T PLN02414        116 HVPPVILRNILENPG--WYTQYTPYQAEIAQGRLESLLNYQTMITDLT------GLPMSNASLLDEGTAAAEAMAMCNNI  187 (993)
T ss_pred             cCCHHHHHHHHhChH--HHhhcCCCchHHHHHHHHHHHHHHHHHHHHh------CCChhhEeecCChHHHHHHHHHHHhc
Confidence            456666566554332  23345543     23    456777888887      6789999999999999999988773 


Q ss_pred             CCC--CEEEEcCCCCcchHHHH----HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          129 RPG--ANVLLPRPGWPYYEGIA----QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       129 ~~g--d~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                      ++|  |+|++++..|+.+...+    +..|++++.++....     +      ...+....+++..| |-+|.+.+   +
T Consensus       188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~v~~vlvq~P-~~~G~v~d---v  252 (993)
T PLN02414        188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGDVCGVLVQYP-ATDGEVLD---Y  252 (993)
T ss_pred             ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCceEEEEEecC-CCCeEEcC---H
Confidence            444  88999999999865444    456888888875221     1      11112333333333 45999988   9


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC---CCCcceeEEEEeeC
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW---LVPGWRFGWLVTND  268 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~---~~~G~rvG~~~~~~  268 (301)
                      ++|+++|+++|+++++ .+... ...  ...+...++-+   |++++..|+.   |..|-+.|++++..
T Consensus       253 ~~I~~~ah~~GaL~iV-aad~l-al~--~l~~pge~GAD---i~vgsgqKwg~P~G~GGP~aGflavr~  314 (993)
T PLN02414        253 AEFVKNAHANGVKVVM-ATDLL-ALT--MLKPPGEWGAD---IVVGSAQRFGVPMGYGGPHAAFLATSQ  314 (993)
T ss_pred             HHHHHHHHHcCCEEEE-EECHH-Hhc--CCCCHhhccCc---EEEECCCccccCCCCCCCCeeEEEECH
Confidence            9999999999999999 44332 111  11123344433   8889999984   12355599998854

>PLN02452 phosphoserine transaminase

Probab=98.73  E-value=7.9e-07  Score=80.43  Aligned_cols=196  Identities=12%  Similarity=0.045  Sum_probs=122.9

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ..+++|+-| |     ...|+.|++++.+.+-+..        ..+..+  -..++.+.+.+.+.+-++++-+.+-+++.
T Consensus         6 ~~~~~f~pG-P-----~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~v~~l~   77 (365)
T PLN02452          6 GRVFNFSAG-P-----ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYEVLFLQ   77 (365)
T ss_pred             CceEeeeCC-C-----CCCCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCceEEEEe
Confidence            457888877 3     3567889898887753211        111211  12344444444554444432222335677


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCC--CCCCHHHHHhhcccCccEEEEcCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERN--WEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      .|+|.++++++..++.+||++++...+..+  +...++.+|...+.... +..+  ..+++++++.  +++.+.+.+++-
T Consensus        78 Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~v~~~hn  154 (365)
T PLN02452         78 GGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-KDEKYTKIPSVSEWEL--TPDAKFVHICAN  154 (365)
T ss_pred             CccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCCChHHcCC--CCCCcEEEECCC
Confidence            999999999999999999999988776664  45666777764333321 1121  1356666532  335677888888


Q ss_pred             CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ...||+. .+   +.++.      ++++|+|.+.+...    .+..+..++     +.+.|..|.+|.+|  +|.++++.
T Consensus       155 ETstGv~~~~---~~~i~------~~~lvVDa~Ss~g~----~pidv~~~~-----v~~~saqK~lGP~G--l~~v~vr~  214 (365)
T PLN02452        155 ETIHGVEFKD---YPDVG------NVPLVADMSSNFLS----KPVDVSKYG-----VIYAGAQKNVGPSG--VTIVIIRK  214 (365)
T ss_pred             CCCCcEecCc---ccccC------CCeEEEECCccccC----cccCHHHcC-----EEEEecccccCCCC--eEEEEEcH
Confidence            8899996 44   44442      37999999998733    344444443     34469999998888  77777744

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.73  E-value=4.4e-07  Score=82.63  Aligned_cols=231  Identities=20%  Similarity=0.171  Sum_probs=132.0

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||-..|-=-.. .---.+++.++++++++.-.+....-..+.+  -..+|+.|.+.-+ +-+-++|++++|+|
T Consensus        40 d~~G~r~lDg~sg~W~~~-~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP-~~~l~~vFf~~sGS  115 (449)
T COG0161          40 DIDGRRYLDGMSGLWCVN-HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAP-EGGLDHVFFTDSGS  115 (449)
T ss_pred             eCCCCEEEecccHHHHhh-cCcCCHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCC-CCCccEEEEeCCch
Confidence            345777777665510000 0112367889999988742211111111223  3334444433211 12256899999999


Q ss_pred             HHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcC--------------ceEEEeecCC---C---CCCC--
Q 022213          118 QAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQ--------------VEVRHFDLLP---E---RNWE--  167 (301)
Q Consensus       118 ~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g--------------~~~~~~~~~~---~---~~~~--  167 (301)
                      +|++.+++....       |. .+++.-..+|++-.-.....+              .....++...   .   ..+.  
T Consensus       116 eAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~  195 (449)
T COG0161         116 EAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEE  195 (449)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHH
Confidence            999999987642       33 348888888875311111111              1122222211   0   0111  


Q ss_pred             --CCHHHHHhhccc---CccEEEEcCC--CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          168 --VDLDAVEALADK---NTAAMVIINP--GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       168 --~~~~~l~~~~~~---~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                        -..++|++.+..   .+.+.++.-|  .--.|+.+ ++..++++-++|++||+++|.||+-..|...++-|.. ..++
T Consensus       196 ~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~-e~~g  274 (449)
T COG0161         196 FAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC-EHAG  274 (449)
T ss_pred             HHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh-hhcC
Confidence              224566666644   4566677777  33367754 5568999999999999999999999998877654422 2233


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      -.++++   +++|.+...-+.+|.+++++        ++.+.+..
T Consensus       275 i~PDi~---~~aKGLT~GY~Pl~a~l~~~--------~I~~~~~~  308 (449)
T COG0161         275 IVPDIL---CLAKGLTGGYLPLSAVLTSD--------RIYEAFSD  308 (449)
T ss_pred             CCCCee---eecccccccchhhHhHhhhH--------HHHHHHhc
Confidence            334556   77998766666777666643        35555544

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.70  E-value=7.5e-07  Score=87.87  Aligned_cols=216  Identities=19%  Similarity=0.119  Sum_probs=127.2

Q ss_pred             CeeeccCCCCCCCCCCC--ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFR--TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~--~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .++|+..|.-..  .+.  ..+++.+++++++.+-.  .+.......+....+|+.|.+.-+ .-..++|++++++++|+
T Consensus       366 ~ylD~~sg~w~~--~lG~h~~p~I~~Ai~~Qa~rl~--hv~~~~~~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeAv  440 (817)
T PLN02974        366 QQFDACASWWTQ--GPDPTLQPELARAVAYAAGRYG--HVMFPENVHEPALRAAELLLGGPG-KGWASRVFFSDNGSTAI  440 (817)
T ss_pred             eEEEcchhHHHh--CCCcCCCHHHHHHHHHHHhhCC--ccccCccCCHHHHHHHHHHHhccC-CCCCCEEEECCchHHHH
Confidence            566766651110  122  36789999999887422  222212234566667777755211 00135899999999999


Q ss_pred             HHHHHHhcC-----C----------------CCEEEEcCCCCcchHHHHHhcCc----------e-----EEEeecC---
Q 022213          121 EVILSVLAR-----P----------------GANVLLPRPGWPYYEGIAQRKQV----------E-----VRHFDLL---  161 (301)
Q Consensus       121 ~~~~~~l~~-----~----------------gd~Vl~~~p~~~~~~~~~~~~g~----------~-----~~~~~~~---  161 (301)
                      +.+++...+     .                ..+|+...-+|++....+...+.          .     ..+++..   
T Consensus       441 E~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~  520 (817)
T PLN02974        441 EVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVG  520 (817)
T ss_pred             HHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccc
Confidence            998886521     1                24688888888864322222211          0     0011100   


Q ss_pred             ----------CCC----------CCC-----CC------------HHHHHhhcc-------cCccEEEEcCC--CCCccc
Q 022213          162 ----------PER----------NWE-----VD------------LDAVEALAD-------KNTAAMVIINP--GNPCGN  195 (301)
Q Consensus       162 ----------~~~----------~~~-----~~------------~~~l~~~~~-------~~~~~v~l~~p--~nptG~  195 (301)
                                +..          .|.     ++            .+.+++.+.       .+..+.++.-|  +.-.|+
T Consensus       521 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGm  600 (817)
T PLN02974        521 MRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGM  600 (817)
T ss_pred             cccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCc
Confidence                      000          000     00            134555553       13345566666  455677


Q ss_pred             CC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          196 VF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       196 ~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      .. +.+.++++.++|++||+++|.||++..|...+.-+ ....++-..+++   +++|.++ .| +.+|.++++.
T Consensus       601 i~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~PDIi---~~gKgLt-gG~~Plaa~l~~~  670 (817)
T PLN02974        601 LLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCKPDIA---CYAKLLT-GGLVPLAATLATE  670 (817)
T ss_pred             ccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCCCCEE---eeccccc-CCCCccEEEEEcH
Confidence            64 67899999999999999999999999987665432 233344445566   6799954 56 6999998853

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.69  E-value=8.6e-07  Score=82.26  Aligned_cols=209  Identities=15%  Similarity=0.111  Sum_probs=112.9

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHH--HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAE--DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~--~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +++.+||+..|--... --...+.+.  +++.+++....................+++.+.+..+ .-..+.++++++++
T Consensus        36 dG~~ylD~~~g~~~~~-lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~f~~sGs  113 (431)
T TIGR03251        36 DGRRYLDMFSFFASMA-LGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG-DPALPHLFFIEGGA  113 (431)
T ss_pred             CCCChhhcccChhhcC-CCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC-CCCcCEEEEeCCcH
Confidence            6788888877732211 112345666  7888877643211111111112333334443333111 11336899999999


Q ss_pred             HHHHHHHHHhcC--------C------CCEEEEcCCCCcchHHHHHhc-Cce---EEEeec-------CC-------CCC
Q 022213          118 QAVEVILSVLAR--------P------GANVLLPRPGWPYYEGIAQRK-QVE---VRHFDL-------LP-------ERN  165 (301)
Q Consensus       118 ~al~~~~~~l~~--------~------gd~Vl~~~p~~~~~~~~~~~~-g~~---~~~~~~-------~~-------~~~  165 (301)
                      +|++.+++....        .      +.+|+...-+|++........ +..   -.+.+.       .+       ...
T Consensus       114 EAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  193 (431)
T TIGR03251       114 LAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN  193 (431)
T ss_pred             HHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccc
Confidence            999999987741        1      367998888888764333221 211   000110       00       000


Q ss_pred             CC-------CCHHHHHhhcc---cCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213          166 WE-------VDLDAVEALAD---KNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP  234 (301)
Q Consensus       166 ~~-------~~~~~l~~~~~---~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~  234 (301)
                      ..       .+++.+++.+.   .++.++++.-...-.|.. .+.+.+++|.++|++||+++|+||++..+...+.. ..
T Consensus       194 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~-~a  272 (431)
T TIGR03251       194 LDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTA-WA  272 (431)
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchH-HH
Confidence            00       12334444443   233444444335555654 57789999999999999999999999987554422 12


Q ss_pred             ccccCCCCCEEEEecCcccC
Q 022213          235 MGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       235 ~~~~~~~~~vi~~~s~SK~~  254 (301)
                      ...++-..+++   +++|.+
T Consensus       273 ~~~~gv~PDi~---~~gK~~  289 (431)
T TIGR03251       273 YQQLGVQPDIV---AFGKKT  289 (431)
T ss_pred             HHhcCCCCCEE---EecccC
Confidence            22233233445   468884

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.69  E-value=2.5e-07  Score=81.32  Aligned_cols=230  Identities=17%  Similarity=0.114  Sum_probs=141.9

Q ss_pred             cccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           36 VNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS--GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        36 ~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +...++++++|+..|.-... .-...+++.+++.+++..  .....|..+ -..++-+.+++.+      .-+-+.++++
T Consensus        44 lyDe~G~ryLD~f~Gi~tvs-lGHchP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~------P~~l~~vfF~  115 (442)
T KOG1404|consen   44 LYDEEGRRYLDAFGGIVTVS-LGHCHPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKL------PGDLKVVFFV  115 (442)
T ss_pred             EEcCCCceeehhhCCeEEEE-cCCCChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhC------CCCceEEEEe
Confidence            44556888888888743221 124567888888888753  223456553 3567777777776      2244469999


Q ss_pred             CCHHHHHHHHHHHhcC-CC-CEEEEcCCCCcchHHH-HHhcCceEEEeecCCC-------------CC-CCCC-----H-
Q 022213          114 LGCKQAVEVILSVLAR-PG-ANVLLPRPGWPYYEGI-AQRKQVEVRHFDLLPE-------------RN-WEVD-----L-  170 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~-~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~-------------~~-~~~~-----~-  170 (301)
                      ++++||.+++++.... .| -.|+-..-+|++.... +-.-+......+....             .+ |.-+     - 
T Consensus       116 nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d  195 (442)
T KOG1404|consen  116 NSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASD  195 (442)
T ss_pred             cCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHH
Confidence            9999999999887642 12 2455455566543222 2222322222111100             00 1111     1 


Q ss_pred             ---HHHHhhcc---cCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          171 ---DAVEALAD---KNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       171 ---~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                         +++++.+.   .++.+.++.-+ .---|.+ ++...+++..++|+++|.++|.||+...|...+ .++.+...+-..
T Consensus       196 ~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~P  274 (442)
T KOG1404|consen  196 RYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVP  274 (442)
T ss_pred             HHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc-ccccccccCCCc
Confidence               33343332   24456666655 4444554 455789999999999999999999999988877 677766665444


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +++   +++|.. ..|+.+|.++.+.        ++.+-+.+..
T Consensus       275 DIv---TmAKgi-GnG~Pl~AVvtt~--------EIa~v~~~~~  306 (442)
T KOG1404|consen  275 DIV---TMAKGI-GNGFPLGAVVTTP--------EIADVLNQKS  306 (442)
T ss_pred             cHH---HHHhhc-cCCCcceeeecCH--------HHHHHHHhcc
Confidence            555   899995 4779999999753        5777776654

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.68  E-value=8.5e-07  Score=82.52  Aligned_cols=209  Identities=14%  Similarity=0.135  Sum_probs=117.0

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHH-HhcC--CCCCCCCCCCCHHHHHHHHHHHh----hhCCCCCCCCCE
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDA-VRSG--KFNCYATNSGIPPARRAIADYLS----RDLPYKLSADDV  110 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~-~~~~--~~~~Y~~~~g~~~lr~~ia~~l~----~~~~~~~~~~~i  110 (301)
                      ..+++.+||+..|.-... .-..++.+.+++.++ ....  ....|.     ......+++.+.    ...+  -+.+.+
T Consensus        54 D~dG~~ylD~~sg~~~~~-lGh~~p~i~~Ai~~q~~~~~l~~~~~~~-----~~~~~~la~~l~~~l~~~~p--~~~~~v  125 (464)
T TIGR00699        54 DVDGNRLLDLYSQISSIP-IGYNNPALLKAAQSPEMATTLINRPALG-----NFPSKDWAKILKEGILKVAP--KGQDQV  125 (464)
T ss_pred             eCCCCEEEEccCCHhhhc-CCCCCHHHHHHHHHHHHHHhhcccccCC-----cHHHHHHHHHHHHhHHhhCC--CCcCEE
Confidence            445788999988733211 123457888888874 2211  111121     223344555442    2111  123689


Q ss_pred             EEcCCHHHHHHHHHHHhcC--------------------------CC---CEEEEcCCCCcchHHHHHhc-Cce------
Q 022213          111 YVTLGCKQAVEVILSVLAR--------------------------PG---ANVLLPRPGWPYYEGIAQRK-QVE------  154 (301)
Q Consensus       111 ~~t~g~~~al~~~~~~l~~--------------------------~g---d~Vl~~~p~~~~~~~~~~~~-g~~------  154 (301)
                      ++++++++|++.+++....                          +|   .+|+...-+|++........ +..      
T Consensus       126 ~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~  205 (464)
T TIGR00699       126 WTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLD  205 (464)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccC
Confidence            9999999999999987731                          11   27998888998754332221 111      


Q ss_pred             -----EEEeecCCCC-CC-----------CCCHHHHHhhccc--CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCC
Q 022213          155 -----VRHFDLLPER-NW-----------EVDLDAVEALADK--NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLR  213 (301)
Q Consensus       155 -----~~~~~~~~~~-~~-----------~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~  213 (301)
                           ...+|..... .+           .-+++.+++.+.+  ...+.++.-| ....|.+. +.+.+++|.++|++||
T Consensus       206 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g  285 (464)
T TIGR00699       206 IPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHN  285 (464)
T ss_pred             CCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence                 1111111000 00           0134556666642  2234444555 45557765 6889999999999999


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCC--CCEEEEecCcccCCCCc
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPG  258 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~~G  258 (301)
                      +++|.||+...+...+. ......++-.  .+++   +++|.++..|
T Consensus       286 ~lLI~DEV~tGfGrtG~-~fa~e~~gv~~~PDi~---t~gK~lg~gG  328 (464)
T TIGR00699       286 VAFIVDEVQTGVGATGK-FWAHEHWNLDDPPDMV---TFSKKFQTAG  328 (464)
T ss_pred             CEEEEeeeeeCCCCCcc-hhHHHhcCCCCCCCEE---EehhhhccCC
Confidence            99999999987754442 1122222221  3444   6799965444

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.67  E-value=8.2e-07  Score=82.58  Aligned_cols=209  Identities=15%  Similarity=0.120  Sum_probs=113.6

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHH--HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAED--AIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~--~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +++.+||+..|.-... --...+.+.+  ++++++..-.+..........+....+++.+.+..+ .-..+.++++++++
T Consensus        43 dG~~ylD~~~g~~~~~-lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~~~~v~f~~SGs  120 (443)
T PRK08297         43 TGRRYLDMFTFFASSA-LGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPELPHLFFVDGGA  120 (443)
T ss_pred             CCCEeeecccCHhhhc-CCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCCCCEEEEeCchH
Confidence            6788888877622111 1123456777  888877531110000001112333445554433211 11236899999999


Q ss_pred             HHHHHHHHHhcC--------CC------CEEEEcCCCCcchHHHHHhc-CceEE-----------EeecCCC----CCCC
Q 022213          118 QAVEVILSVLAR--------PG------ANVLLPRPGWPYYEGIAQRK-QVEVR-----------HFDLLPE----RNWE  167 (301)
Q Consensus       118 ~al~~~~~~l~~--------~g------d~Vl~~~p~~~~~~~~~~~~-g~~~~-----------~~~~~~~----~~~~  167 (301)
                      ||++.+++....        .|      .+|+...-+|++....+... +....           .++....    ....
T Consensus       121 EAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (443)
T PRK08297        121 LAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGED  200 (443)
T ss_pred             HHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccc
Confidence            999999997731        12      57998998998764333322 11100           0100000    0000


Q ss_pred             ---------CCHHHHHhhccc--CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC
Q 022213          168 ---------VDLDAVEALADK--NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP  234 (301)
Q Consensus       168 ---------~~~~~l~~~~~~--~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~  234 (301)
                               -+++.+++.+..  +..+.++.-| ....|. ..+.+.+++|.++|++||+++|.||++..+...+.- ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~-~a  279 (443)
T PRK08297        201 LEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTA-WA  279 (443)
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchH-HH
Confidence                     023444555532  2334445555 333454 477899999999999999999999999887544421 12


Q ss_pred             ccccCCCCCEEEEecCcccC
Q 022213          235 MGLFGSIVPVITLGSISKRW  254 (301)
Q Consensus       235 ~~~~~~~~~vi~~~s~SK~~  254 (301)
                      ...++-..+++   +++|.+
T Consensus       280 ~~~~gv~PDiv---~~gK~l  296 (443)
T PRK08297        280 YQQLGVRPDIV---AFGKKT  296 (443)
T ss_pred             HHhcCCCCCEE---Eecccc
Confidence            22233233455   579985

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.66  E-value=1.2e-06  Score=77.47  Aligned_cols=218  Identities=17%  Similarity=0.133  Sum_probs=129.4

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+++.+||+..+.-...+. ...+++.+++.+++..-  ....|..-+ .-++.+.+.+.+.+     -..+.|++++++
T Consensus        53 ~~g~EyiD~~ssw~~~~~G-hanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsG  125 (433)
T KOG1401|consen   53 PDGKEYIDFTSSWAVTILG-HANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSG  125 (433)
T ss_pred             CCcceeeeeccceeccccC-CCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCC
Confidence            4578899998884322222 33578888888887642  122222211 12333333333322     277899999999


Q ss_pred             HHHHHHHHHHhcC------CCC--EEEEcCCCCcch-HHHHHhcCceEEEeecC---CC--CCCCCCHHHHHhhcccCc-
Q 022213          117 KQAVEVILSVLAR------PGA--NVLLPRPGWPYY-EGIAQRKQVEVRHFDLL---PE--RNWEVDLDAVEALADKNT-  181 (301)
Q Consensus       117 ~~al~~~~~~l~~------~gd--~Vl~~~p~~~~~-~~~~~~~g~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~-  181 (301)
                      |+|.+.++..-.+      +-+  +|+...-+|++- ...+...+......+.+   ++  ...--|...+++.+..+. 
T Consensus       126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~  205 (433)
T KOG1401|consen  126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG  205 (433)
T ss_pred             cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence            9999999987643      112  377777777653 23333223222222221   11  011246788888886644 


Q ss_pred             -cEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          182 -AAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       182 -~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                       .+.++.-| +--.|. ..+++.++.|.+.|+++++++|.||+.-.|...+.. .....+.-.++++   ++.|.+ ..|
T Consensus       206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~-~a~e~~~~~PDI~---t~aK~L-~gG  280 (433)
T KOG1401|consen  206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYG-WAQEYFGVTPDIT---TVAKPL-GGG  280 (433)
T ss_pred             ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchH-HHHHHhCcCCcce---eehhhc-cCC
Confidence             33344555 434454 456788999999999999999999999986654321 1111222222334   778984 578


Q ss_pred             ceeEEEEeeC
Q 022213          259 WRFGWLVTND  268 (301)
Q Consensus       259 ~rvG~~~~~~  268 (301)
                      +.+|..++.+
T Consensus       281 lPigA~~v~~  290 (433)
T KOG1401|consen  281 LPIGATGVRD  290 (433)
T ss_pred             ceeEEEeehH
Confidence            9999998844

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.66  E-value=2.6e-06  Score=81.45  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC------------------------
Q 022213           75 GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP------------------------  130 (301)
Q Consensus        75 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~------------------------  130 (301)
                      .....|..+.+...+++++.+++.+-+|.+-  ..=.+|+|+|+|...++....+.                        
T Consensus       110 ~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~  187 (608)
T TIGR03811       110 GNNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELL  187 (608)
T ss_pred             CCCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhc
Confidence            3334565555778999999999988777542  33457889999876655443210                        


Q ss_pred             ----------------------------C------CEEEEcCCCCcchHHHHHhcCce---EEEeecCCCCCCCCCHHHH
Q 022213          131 ----------------------------G------ANVLLPRPGWPYYEGIAQRKQVE---VRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus       131 ----------------------------g------d~Vl~~~p~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l  173 (301)
                                                  |      -+|+++.-.|.++...+..+|+.   ++.+|++  .++.+|++.|
T Consensus       188 n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD--~~~rmd~~~L  265 (608)
T TIGR03811       188 NMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVD--SNYRMDINEL  265 (608)
T ss_pred             ccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecC--CCCcCCHHHH
Confidence                                        0      05788888899999999999984   7788875  3567999999


Q ss_pred             Hhhccc----C-c-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC--eEEEccCCcccc
Q 022213          174 EALADK----N-T-AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV--MVVADEVYGHLT  226 (301)
Q Consensus       174 ~~~~~~----~-~-~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~--~ii~D~~y~~~~  226 (301)
                      ++.+.+    + + -+|+.+..+..+|.+=+.+++.+|++.++++|+  ++.+|.+|+.+.
T Consensus       266 ~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~  326 (608)
T TIGR03811       266 EKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG  326 (608)
T ss_pred             HHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence            987753    2 2 235556668889999885555555555578897  699999999853

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.57  E-value=2.6e-06  Score=76.11  Aligned_cols=174  Identities=21%  Similarity=0.241  Sum_probs=121.5

Q ss_pred             CCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC--CHH---HHHHHHHHHhc-CCC----CEEEEcCCCCcc
Q 022213           77 FNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL--GCK---QAVEVILSVLA-RPG----ANVLLPRPGWPY  143 (301)
Q Consensus        77 ~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~--g~~---~al~~~~~~l~-~~g----d~Vl~~~p~~~~  143 (301)
                      ++-|.|   .+|..++...+.+||.+-    ..-|.|.+.+  |++   .++ ++++..- ..|    +.|++|+..|..
T Consensus        95 iHP~~pe~~vqG~l~li~~Lq~~L~~I----TG~DavsLQP~AGAqGE~aGl-l~Ir~YHe~rG~~~R~~~LIP~SAHGT  169 (496)
T COG1003          95 IHPFQPEEQVQGYLELIYELQEWLKEI----TGMDAVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRNICLIPDSAHGT  169 (496)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHh----cCCceeeccCCCCcchhhHHH-HHHHHHHHHcCCCcCcEEEeeccccCC
Confidence            334554   457888889999999773    2345565533  332   222 2333332 233    689999999998


Q ss_pred             hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc
Q 022213          144 YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG  223 (301)
Q Consensus       144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~  223 (301)
                      ....+...|.+++.|+.+.+..  +|+++|+..+.+++.++.+++||. .|..  .+.+++|+++.+++|..+..|.+..
T Consensus       170 NPASAam~G~~VV~V~~~~~G~--VDlddLk~k~~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANl  244 (496)
T COG1003         170 NPASAAMAGFKVVVVKCDENGN--VDLDDLRAKAEDNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANL  244 (496)
T ss_pred             ChhhHhhcCceEEEEecCCCCC--ccHHHHHHHhccceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcch
Confidence            8888899999999999866544  999999999998899999999874 2333  4679999999999999999999988


Q ss_pred             ccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEe
Q 022213          224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVT  266 (301)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~  266 (301)
                      .-..+-.++-.+..     + |+=-.++|+|..|    |-..|=|.+
T Consensus       245 NA~vG~~rPGd~G~-----D-V~HlNLHKTF~iPHGGGGPG~GPvgV  285 (496)
T COG1003         245 NAIVGLARPGDMGF-----D-VVHLNLHKTFCIPHGGGGPGAGPVGV  285 (496)
T ss_pred             hhhhcccccccccc-----c-eEEeecccccccCCCCCCCCCCceeh
Confidence            76665444433321     1 3333667776554    555666654

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.50  E-value=1.2e-05  Score=69.52  Aligned_cols=155  Identities=19%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcc-----hHHHHHhcCceEEEeecC
Q 022213           89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPY-----YEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~-----~~~~~~~~g~~~~~~~~~  161 (301)
                      +-..+|.++      +..+.+++++.+.+--++.++.+.++  +|++|++++-.-++     ...++..++..   .++ 
T Consensus        81 lgdklApLi------GA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~-  150 (407)
T COG3844          81 LGDKLAPLI------GARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL-  150 (407)
T ss_pred             HHHHhhhhh------cCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc-
Confidence            334455555      45788999999999999988888864  58888877543332     12344444433   111 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                         .....++++++++++.+.++++++.+.-||..++   +.+|-.++++++++++.|-+++.    +.-+..+...+-+
T Consensus       151 ---~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaD  220 (407)
T COG3844         151 ---EGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGAD  220 (407)
T ss_pred             ---eeeeChHHHHHhhccceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhccc----CCcceeecccCCC
Confidence               1225677899999988999999999999999999   88899999999999999999987    3333334333333


Q ss_pred             CCEEEEecCcccCCC-CcceeEEEEe
Q 022213          242 VPVITLGSISKRWLV-PGWRFGWLVT  266 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~-~G~rvG~~~~  266 (301)
                         +-|++..|.+.. ||---|.-+.
T Consensus       221 ---faigcsyKYLNgGPGapa~l~v~  243 (407)
T COG3844         221 ---FAIGCSYKYLNGGPGAPAGLFVA  243 (407)
T ss_pred             ---eeeeeeceeccCCCCCceeEEec
Confidence               889999998766 6655444444

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.49  E-value=1.7e-07  Score=82.83  Aligned_cols=206  Identities=20%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHH-HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPAR-RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR  138 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr-~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~  138 (301)
                      .++.+.+++.+...+-...+|.-..|-..-| ..+.+++..    =...+..+++++...|+.+++.+++ +|.+|++..
T Consensus        18 l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~----ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsR   92 (367)
T PF03841_consen   18 LSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCE----LTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSR   92 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc-ccccccccc
Confidence            4466777776665532222443222222111 222333322    1356788899999999999999887 455666542


Q ss_pred             CCC------cchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc--ccCCCHHHHHHHHHHHH
Q 022213          139 PGW------PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC--GNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       139 p~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G~~~~~~~l~~i~~~~~  210 (301)
                      -.-      +....+.+..|.+++++...+    ...++++++++++++.+++..+++|-.  |..-. -.+++++++++
T Consensus        93 GelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~-~~~~el~~la~  167 (367)
T PF03841_consen   93 GELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE-VSLEELAELAK  167 (367)
T ss_dssp             -------------------------------------------------------------------------HHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccc-ccHHHHHHHHh
Confidence            211      224567778899988887532    256788999999999999889987753  32211 24889999999


Q ss_pred             hCCCeEEEccCCcccc----cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          211 KLRVMVVADEVYGHLT----FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~----~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +|++++|+|-.-+.+.    |+-+..+.+..+-..+--++++|--|.+|.|-  .|.+++.        .++++++++.
T Consensus       168 ~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ--aGiI~Gk--------k~lI~~lk~~  236 (367)
T PF03841_consen  168 EHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ--AGIIVGK--------KELIEKLKKH  236 (367)
T ss_dssp             HHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S---EEEEEE--------HHHHHHHHHH
T ss_pred             hcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC--eEEEEeC--------HHHHHHHhhC
Confidence            9999999999885443    22122333444433333388889999876554  7999984        4699988875

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.19  E-value=1.4e-05  Score=71.95  Aligned_cols=178  Identities=18%  Similarity=0.207  Sum_probs=123.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----CC---CEEEEcCCCCcchHHHHHhcCceEE
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----PG---ANVLLPRPGWPYYEGIAQRKQVEVR  156 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----~g---d~Vl~~~p~~~~~~~~~~~~g~~~~  156 (301)
                      +..++..++-+++.+-++-+ +..-=..|.|+|+++..+-..-..     .|   -.++.+...+..+....+..+++..
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~  195 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELR  195 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEE
Confidence            45677777777776655433 222336788999996555544421     22   3477777777788888888999999


Q ss_pred             EeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEccCCcccccCCCCCCCc
Q 022213          157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK-LRVMVVADEVYGHLTFGSIPYTPM  235 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~  235 (301)
                      .+++++ +.+.+|+.++.+.+++++..++..-|+.|+|..=+   +++|.++..+ +++.+.+|.+-+.|.-. ......
T Consensus       196 ~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgFi~p-~~~~~~  270 (491)
T KOG1383|consen  196 EVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIED---VEKLADLLLEIWDIPIHVDACLGGFINP-AGYLNE  270 (491)
T ss_pred             eeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccchhh---HHHHHHHHHHHhCCceeecccCcccccc-ccccCc
Confidence            999876 67889999999999999999999999999999866   8888888778 99999999999988752 011111


Q ss_pred             cccCCCCC-EEEE-ecCcccCCCCcceeEEEEeeCC
Q 022213          236 GLFGSIVP-VITL-GSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       236 ~~~~~~~~-vi~~-~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ..++-..+ |-.+ .+-+|. |+.--..||++=.+.
T Consensus       271 ~~fdFr~p~V~Sisa~~HKY-Gl~~~G~~~vl~r~k  305 (491)
T KOG1383|consen  271 EEFDFRVPGVTSISADGHKY-GLAPAGSSWVLYRNK  305 (491)
T ss_pred             cccccCCCCceeEeecccee-eeeecCcEEEEEccc
Confidence            12221111 2111 134454 665556888876554

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.16  E-value=0.00015  Score=66.28  Aligned_cols=154  Identities=21%  Similarity=0.353  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcchHHHHH----hcCceEEEee
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFD  159 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~  159 (301)
                      -++...++++.      +++.-|.-+-.|++.+-+.++.+..   +.+++|+++...|+.+..+++    ..|++++.++
T Consensus       113 fe~Qs~i~eLT------GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~  186 (429)
T PF02347_consen  113 FEYQSMICELT------GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP  186 (429)
T ss_dssp             HHHHHHHHHHH------TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred             HHHHHHHHHhh------CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence            34555566665      3455566777788777776666553   334699999999998876544    4688888888


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      ......  .|        ++++.++++.+||. .|.+-+   +++|+++++++|.++++ .+.- +....  ..+-..++
T Consensus       187 ~~~~~~--~d--------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~--l~~Pge~G  248 (429)
T PF02347_consen  187 LDEDGT--TD--------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGG--LKSPGEYG  248 (429)
T ss_dssp             BBTTCS--B---------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCT--C--GGGGT
T ss_pred             ccccCC--cc--------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhC--cCChhhcC
Confidence            754322  23        56788899999985 788877   99999999999998886 3322 22221  11222333


Q ss_pred             CCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVP----GWRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~  268 (301)
                      -+   |++++ +|.||.|    |-..|++.+.+
T Consensus       249 AD---I~vg~-~Q~fg~p~~~GGP~~G~~a~~~  277 (429)
T PF02347_consen  249 AD---IVVGE-HQTFGIPMGFGGPGAGFFAVRE  277 (429)
T ss_dssp             -S---EEEEC-CTTTT---CCC-S--EEEEE-G
T ss_pred             cc---EEeeC-CCCCcccCCCCCCCeeeEEEhh
Confidence            33   55665 8887775    66788988754

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.08  E-value=0.00022  Score=71.15  Aligned_cols=177  Identities=16%  Similarity=0.268  Sum_probs=111.6

Q ss_pred             CChHHHHHHHHHHHhcCC-CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc
Q 022213           59 RTAVEAEDAIVDAVRSGK-FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~  128 (301)
                      ..|+.+.+.+.   .++. +..|.|-+     |    +-++.+.++++.      +++..|.-+..++|.+.++++.+..
T Consensus        77 ~~p~~i~r~v~---~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt------Gm~~aNaSl~d~atA~aEa~~~a~~  147 (939)
T TIGR00461        77 ILPPVIQRNLL---ENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT------GLPVANASLLDEGTAAAEAMALSFN  147 (939)
T ss_pred             cCChHHHHHHH---hCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH------CCChhhhhccchhhHHHHHHHHHHH
Confidence            34555554433   3332 55666633     3    334556666666      4677788899999998887777753


Q ss_pred             ---CCCCEEEEcCCCCcchHHHHH----hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          129 ---RPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       129 ---~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                         +++++|++++-.|+.+..+++    ..|++++.++          .++|+..+  ++.++++.+|+. .|.+.+   
T Consensus       148 ~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~--~~~~v~~q~Pn~-~G~ied---  211 (939)
T TIGR00461       148 VSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV--DVFGCLLQYPAT-DGSILD---  211 (939)
T ss_pred             hhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--CEEEEEEECCCC-CeEEec---
Confidence               234899999999998765554    6788877653          34566554  356677778764 788876   


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTND  268 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~  268 (301)
                      +++|+++++++|.+++++.--..+..    ..+-..++-+   |+++ .+|.||.|    |-..|++.+++
T Consensus       212 ~~~i~~~~h~~gal~~~~ad~~al~l----l~~Pge~GaD---i~vg-~~q~fg~p~g~GGP~aG~~a~~~  274 (939)
T TIGR00461       212 YKQLIDALHSHKSLVSVAADLMALTL----LTPPGHYGAD---IVLG-SSQRFGVPMGYGGPHAAFFAVKD  274 (939)
T ss_pred             HHHHHHHHHHcCCEEEEEechHHhCC----cCCHHHcCCc---EEee-CCCccCCCCCCCCCceeeeeecH
Confidence            89999999999999998544333221    1122233322   5444 34444542    44478887643

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.05  E-value=5.8e-05  Score=65.32  Aligned_cols=211  Identities=14%  Similarity=0.090  Sum_probs=121.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC---CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN---CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ++.+++|-.+--.. .+-.+.+.+.++++++.+.-.+.   -|.+.  ..++.+-+++++        .-+.++-++.+-
T Consensus        58 Gk~ylDflsaysaV-nqGhchpki~~aLqeq~~kLtlssrafYnd~--~~~f~~~vt~lf--------~~~kvlpmnTGa  126 (427)
T KOG1402|consen   58 GKEYLDFLSAYSAV-NQGHCHPKIIKALQEQADKLTLSSRAFYNDV--LGEFAEYVTKLF--------GYDKVLPMNTGA  126 (427)
T ss_pred             ccchhhhhhhhhhc-ccCCCCHHHHHHHHHHHhHhhhhhHHHhhhh--HHHHHHHHHHhc--------Ccceeeecccch
Confidence            45555554442111 13456788889998887632111   12221  234445555544        356778788889


Q ss_pred             HHHHHHHHHhcC--------CCC--EEEEcCCCCcchHHHHHhcCceE----EEeecCCCCC---CCCCHHHHHhhcccC
Q 022213          118 QAVEVILSVLAR--------PGA--NVLLPRPGWPYYEGIAQRKQVEV----RHFDLLPERN---WEVDLDAVEALADKN  180 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd--~Vl~~~p~~~~~~~~~~~~g~~~----~~~~~~~~~~---~~~~~~~l~~~~~~~  180 (301)
                      ||.+.++....+        |.|  +|+...-.|.+-.-.+-.++.+.    .+=|..+...   ---|.+.|+.++++.
T Consensus       127 Ea~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~~  206 (427)
T KOG1402|consen  127 EAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSP  206 (427)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcCC
Confidence            999999877652        323  34444444443111110111110    0000000000   013789999999887


Q ss_pred             ccEEEEcCC-CCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..+.|+.-| +-..|++.+. ..++++.++|.+||+++|.||++..+...++ +.....-.-..+++.   +.|.++..=
T Consensus       207 ~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~env~PDivi---lgKalSGG~  282 (427)
T KOG1402|consen  207 NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYENVRPDIVI---LGKALSGGV  282 (427)
T ss_pred             CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhhcCCCeEE---EeccccCCe
Confidence            777778877 6677876655 6899999999999999999999999887664 222221111233443   468766655


Q ss_pred             ceeEEEEe
Q 022213          259 WRFGWLVT  266 (301)
Q Consensus       259 ~rvG~~~~  266 (301)
                      +.+..+++
T Consensus       283 ~Pvsavl~  290 (427)
T KOG1402|consen  283 YPVSAVLA  290 (427)
T ss_pred             eeeEEEEe
Confidence            66777776

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.69  E-value=0.0015  Score=59.22  Aligned_cols=195  Identities=12%  Similarity=0.124  Sum_probs=115.8

Q ss_pred             ccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHHHHhh
Q 022213           23 VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---KFNCYATNSGIPPARRAIADYLSR   99 (301)
Q Consensus        23 ~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~   99 (301)
                      .+..+++.++.+-+    -+++....+.  .+.-+||....+...+.+.+..+   -........-.++|..-+.+|+.+
T Consensus        51 E~~~~Il~D~ekiI----~PGitHw~hP--~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~k  124 (511)
T KOG0628|consen   51 ESWEDILGDLEKII----MPGITHWQHP--HFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGK  124 (511)
T ss_pred             hhHHHHHHHHHHHc----cCCCcccCCC--ceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHH
Confidence            34444555544332    2444444443  33233555333333344444322   122334445689999999999887


Q ss_pred             hCCC-------CCCCCCEEEcCCHHHHHHHHHHHhc-------CCC-----------CE-EEEcCCCCcchHHHHHhcCc
Q 022213          100 DLPY-------KLSADDVYVTLGCKQAVEVILSVLA-------RPG-----------AN-VLLPRPGWPYYEGIAQRKQV  153 (301)
Q Consensus       100 ~~~~-------~~~~~~i~~t~g~~~al~~~~~~l~-------~~g-----------d~-Vl~~~p~~~~~~~~~~~~g~  153 (301)
                      -.+.       .....-=++-.+++++...++.+-.       +.+           +- +...+-++.+....+...++
T Consensus       125 ml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~V  204 (511)
T KOG0628|consen  125 MLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGV  204 (511)
T ss_pred             HhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcce
Confidence            4432       1112222444455666655554431       112           22 33567788888888888899


Q ss_pred             eEEEeecCCCCCCCCCHHHHHhhcccCc-----cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213          154 EVRHFDLLPERNWEVDLDAVEALADKNT-----AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF  227 (301)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~  227 (301)
                      +...++.+.  ++.+..+.|.+++.+..     ..+++.+.  -|..+-.-+++.+|..+|+++++|+.+|.+|+...+
T Consensus       205 klR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~  279 (511)
T KOG0628|consen  205 KLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAF  279 (511)
T ss_pred             eEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcchhhhcCEEEEeehhhccccc
Confidence            988887654  78899999999986522     22222333  233344557899999999999999999999997655

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00087  Score=58.93  Aligned_cols=136  Identities=19%  Similarity=0.241  Sum_probs=98.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----CCCEEEEcCCCCc-chHHHHHhcC
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----PGANVLLPRPGWP-YYEGIAQRKQ  152 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----~gd~Vl~~~p~~~-~~~~~~~~~g  152 (301)
                      .|.-+.+...|++++.+.+.        -+.++-|.-+..|=+.++..+++     ||.+.++++..|. ......+..|
T Consensus        74 AYagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng  145 (471)
T COG3033          74 AYAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQING  145 (471)
T ss_pred             hhcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcC
Confidence            58888889999999999872        35677788777777777777765     4555556655555 4455556677


Q ss_pred             ceEEEeecCCCC--------CCCCCHHHHHhhccc----CccEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213          153 VEVRHFDLLPER--------NWEVDLDAVEALADK----NTAAMVII-NPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD  219 (301)
Q Consensus       153 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~----~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D  219 (301)
                      ..+.-++.+...        ...+|++.|++.+++    +..-|+++ +.|.-.|...|.+.++++.++|++|++.++.|
T Consensus       146 ~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~D  225 (471)
T COG3033         146 ATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMD  225 (471)
T ss_pred             CccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEee
Confidence            766666543321        134899999999875    33334444 34557789999999999999999999999999


Q ss_pred             cCC
Q 022213          220 EVY  222 (301)
Q Consensus       220 ~~y  222 (301)
                      .+-
T Consensus       226 a~R  228 (471)
T COG3033         226 AAR  228 (471)
T ss_pred             hhh
Confidence            874

>PLN02672 methionine S-methyltransferase

Probab=97.49  E-value=0.0036  Score=63.67  Aligned_cols=215  Identities=11%  Similarity=0.059  Sum_probs=133.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc------CCCCEEEEc
Q 022213           64 AEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA------RPGANVLLP  137 (301)
Q Consensus        64 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~------~~gd~Vl~~  137 (301)
                      ....++..+.+..+.-|.++.|...+|..||.|++..+++.+.+++|++.++-..|++.+++.+.      +.+.+-.++
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (1082)
T PLN02672        406 FLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP  485 (1082)
T ss_pred             HHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC
Confidence            34566777877788889999999999999999999999999999999999999999988887663      333222222


Q ss_pred             CCCCcchHHHHHhcC--------ceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHH
Q 022213          138 RPGWPYYEGIAQRKQ--------VEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEM  208 (301)
Q Consensus       138 ~p~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~  208 (301)
                          ..|...+...|        ..+..+....      ..+.+.+++++ ++++|+.....   +-..+....+.|++.
T Consensus       486 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  552 (1082)
T PLN02672        486 ----KKWLTSLAIENATSDSKSDDVITVIEAPR------QSDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLLNV  552 (1082)
T ss_pred             ----HHHHhHhhhhcccccCccCCeEEEEeCCC------cchHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHHHH
Confidence                12222222222        2233222111      11244455544 55655544333   223444568999999


Q ss_pred             HHhCCCeEEEccCCcccccCCCCCCCcccc----CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLF----GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       209 ~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~----~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      +++.|..++.|..-..-.-..+....+..+    ....+..++.++-|+--.+.+-+.+++.-+       +.+.+.+.+
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  625 (1082)
T PLN02672        553 TAEIGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISEN-------EAVLKALSK  625 (1082)
T ss_pred             HHhhCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCc-------HHHHHHHHH
Confidence            999999999998754321111111111111    111245667789999777999999998533       235666655


Q ss_pred             hhcc-cCCCcccccc
Q 022213          285 CLSI-YSDIPTFIQV  298 (301)
Q Consensus       285 ~~~~-~~~~~~~~q~  298 (301)
                      ...+ .+.++..+|.
T Consensus       626 ~~~~~~~~~~~~~~~  640 (1082)
T PLN02672        626 TGEVLEGRTAIISQF  640 (1082)
T ss_pred             HHHhhccchHHHHHH
Confidence            5442 3445555553

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=97.42  E-value=0.0045  Score=55.68  Aligned_cols=193  Identities=10%  Similarity=0.077  Sum_probs=105.1

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--C-----C-----C
Q 022213           65 EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--P-----G-----A  132 (301)
Q Consensus        65 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~-----g-----d  132 (301)
                      .+.+.+.++- ....|.-.....-..+.+-....+-.|.....|.|+.-.|+...++...-+--+  |     |     +
T Consensus       119 g~wlT~t~Nt-n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~  197 (510)
T KOG0629|consen  119 GEWLTSTANT-NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPP  197 (510)
T ss_pred             HHHHHhccCC-CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCc
Confidence            3444444332 233465444444444444444444455555556666555555555444433211  2     2     3


Q ss_pred             EEE-EcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc-Ccc-EE-EEcCC---CCCcccCCCHHHH
Q 022213          133 NVL-LPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK-NTA-AM-VIINP---GNPCGNVFTYHHL  202 (301)
Q Consensus       133 ~Vl-~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~v-~l~~p---~nptG~~~~~~~l  202 (301)
                      -|+ ..+-+|.+....++.+|+   .++.|+.+.  ...+++++||+.+.+ +.+ .+ ++.+.   +..-|..=+   +
T Consensus       198 lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e--~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L  272 (510)
T KOG0629|consen  198 LILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDE--RGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---L  272 (510)
T ss_pred             EEEEecccchhhHHHHHHHhccCCceeEEecccc--cCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---H
Confidence            455 445677788888888884   455555433  345999999987643 112 11 23333   445566555   9


Q ss_pred             HHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          203 QEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ..|+++|++|++|+.+|.+|+. +-.....-.-+.-... .+ =+-++.+|..| ..+.++..+.
T Consensus       273 ~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Gier-a~-SvtwnpHK~~g-aplqCsa~l~  334 (510)
T KOG0629|consen  273 NGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIER-AN-SVTWNPHKLMG-APLQCSAFLT  334 (510)
T ss_pred             HHHHHHHHhcCEEEEeecccccccccChhhHhhccCccc-cC-ceeecHHHhhc-CcchhhHHHH
Confidence            9999999999999999999987 2222111111111111 11 34457888844 4566666554

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.31  E-value=0.017  Score=52.25  Aligned_cols=168  Identities=22%  Similarity=0.309  Sum_probs=105.6

Q ss_pred             CCCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcc
Q 022213           76 KFNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPY  143 (301)
Q Consensus        76 ~~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~  143 (301)
                      .+..|.|-+     |    +.++..-++++.      +++-.|--+--++|.+-++++.+..   ++.++|+++.-.|+.
T Consensus       103 wyTaYTPYQpEISQGrLqaLfefQtlv~dLT------Gm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpq  176 (450)
T COG0403         103 WYTAYTPYQPEISQGRLEALFEFQTLVADLT------GLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQ  176 (450)
T ss_pred             ccccCCCCchhhhhHHHHHHHHHHHHHHHHh------CCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHH
Confidence            356676633     3    233445555555      4566677777788888777777664   246899999999998


Q ss_pred             hHHHHHh----cCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEc
Q 022213          144 YEGIAQR----KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVAD  219 (301)
Q Consensus       144 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D  219 (301)
                      +..+++-    .|.+++.++.       -|.+.+++..+..+.++++.+|+. .|..  .+++++|.+.+++++.++++=
T Consensus       177 t~~Vl~Tra~~~g~~i~~~~~-------~d~~~l~~~~~~~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~al~~v~  246 (450)
T COG0403         177 TLDVLRTRAEGLGIEIEVVDA-------DDLDDLESADDGDVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAGALVIVA  246 (450)
T ss_pred             HHHHHHhhcccCceEEEEecc-------chhhhhhhccccCeEEEEEecCCC-CCcc--chhHHHHHHHHhhcCCEEEEE
Confidence            8777652    4566665544       267778877223677888888883 5622  235999999999999876642


Q ss_pred             cCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC----cceeEEEEee
Q 022213          220 EVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP----GWRFGWLVTN  267 (301)
Q Consensus       220 ~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~  267 (301)
                      .---.+.    ...+-.+++.+   |++++..-. |.|    |-.+||.++.
T Consensus       247 aDplaL~----LL~pPGe~GAD---IvvG~~Qrf-GvPmgfGGPhag~fA~~  290 (450)
T COG0403         247 ADPLALG----LLKPPGEFGAD---IVVGSAQRF-GVPMGFGGPHAGYFAVK  290 (450)
T ss_pred             echhHhh----ccCCccccCCc---eEEecCccc-CCCcCCCCcceeeeeEh
Confidence            1111111    11222233333   778776664 554    6778888874

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.24  E-value=0.00094  Score=59.91  Aligned_cols=167  Identities=16%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             CCCEEEcCCHHHH-HHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhccc---
Q 022213          107 ADDVYVTLGCKQA-VEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADK---  179 (301)
Q Consensus       107 ~~~i~~t~g~~~a-l~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~---  179 (301)
                      ....++.+-+|.. +.+++.++.  ..++.|+.+.-.+......+..+|++++.++...+ +....|.+.+++.+++   
T Consensus        74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~  153 (389)
T PF05889_consen   74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGA  153 (389)
T ss_dssp             HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCG
T ss_pred             ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCC
Confidence            3457777666554 444555553  35789999888888878888999999999986432 3344577788877754   


Q ss_pred             CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCCc
Q 022213          180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVPG  258 (301)
Q Consensus       180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~G  258 (301)
                      .+..+++++++.-.|...  +++++|+++|++||+..|+..+|+-=..  .--..+..-...+++ +++.|+-|.|..| 
T Consensus       154 ~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~~--~~~~~i~~a~~~GRvda~vqS~dkNF~VP-  228 (389)
T PF05889_consen  154 DNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGVQSS--KCMHLIQQAWRVGRVDAFVQSTDKNFMVP-  228 (389)
T ss_dssp             GGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-H--HHHHHHHHHHHHSTCSEEEEEHHHHHCEE-
T ss_pred             CCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhhhHH--HHHHHHHHHHhcCCcceeeeecCCCEEec-
Confidence            345566666544344433  3699999999999999999999985100  000000000001222 7888999998765 


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ..-+.+++++       +..+..+...
T Consensus       229 vGgai~As~~-------~~~i~~vs~~  248 (389)
T PF05889_consen  229 VGGAIMASFD-------PSGILAVSKE  248 (389)
T ss_dssp             SSHEEEEESS-------HHHHHHHHHT
T ss_pred             CCCcEEEecC-------HHHHHHHHHH
Confidence            2234444433       3466666553

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.16  E-value=0.021  Score=50.57  Aligned_cols=219  Identities=15%  Similarity=0.142  Sum_probs=121.5

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhh
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSR   99 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~   99 (301)
                      ..++.++++..-+.     ...-|.|=..+      -.+...+.+++...+.+.=--.|+-  -.|-.++..++..+..+
T Consensus        25 DPev~~ii~~Ek~R-----Q~~gieLIaSE------NFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~   93 (477)
T KOG2467|consen   25 DPEVHDIIEKEKER-----QKRGIELIASE------NFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQK   93 (477)
T ss_pred             ChHHHHHHHHHHHh-----hhcceeEeecc------cchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHH
Confidence            44566666543221     34456663333      2345778888887776421111221  11224455544444433


Q ss_pred             ----hCCCCCCCC----CEEEcCCHHHHHHHHHHHhcCCCCEEE---EcCCCCcchHHHH--HhcCceEEE-----eecC
Q 022213          100 ----DLPYKLSAD----DVYVTLGCKQAVEVILSVLARPGANVL---LPRPGWPYYEGIA--QRKQVEVRH-----FDLL  161 (301)
Q Consensus       100 ----~~~~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~Vl---~~~p~~~~~~~~~--~~~g~~~~~-----~~~~  161 (301)
                          .++  ++++    ||-. -+++.|.+.+..++++|+|+|.   +|+-+|..+....  +.-...-++     +.++
T Consensus        94 RALeaF~--ldp~kWGVNVQp-~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~  170 (477)
T KOG2467|consen   94 RALEAFG--LDPEKWGVNVQP-YSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD  170 (477)
T ss_pred             HHHHHhC--CCHHHCceeecc-CCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC
Confidence                122  4443    3333 3456888899999999999988   4444554321111  111111222     2233


Q ss_pred             CCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccC
Q 022213          162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFG  239 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~  239 (301)
                      +.. .-+|.|.|++.... ++++++.-...  -...++-.++++|++   +.|.+++.|-++.. ++-.+.-+.|+...+
T Consensus       171 ~~T-G~IDYD~Le~~A~~frPk~iiaG~Sa--Y~R~~DYaR~R~Iad---~~gA~Lm~DMAHISgLVAA~vipsPFey~D  244 (477)
T KOG2467|consen  171 PST-GYIDYDKLEKTATLFRPKLIIAGTSA--YSRLIDYARFRKIAD---KVGAYLMADMAHISGLVAAGVIPSPFEYCD  244 (477)
T ss_pred             CCC-CceehHHHHHHHHhcCCcEEEecccc--chhhccHHHHHHHHH---hcCceeehhhhhHHHHHhcccCCCcccccc
Confidence            433 35899999986544 66765532222  223455455666555   77999999999874 333344444444332


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                           |+..+.+|+  +.|-|-|.+.-.
T Consensus       245 -----iVTTTTHKs--LRGPRg~mIFyR  265 (477)
T KOG2467|consen  245 -----IVTTTTHKS--LRGPRGAMIFYR  265 (477)
T ss_pred             -----eeecccccc--ccCCcceeEEEe
Confidence                 888999998  678888887653

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.12  E-value=0.00064  Score=58.32  Aligned_cols=205  Identities=14%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             CChHHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC---CCCEE
Q 022213           59 RTAVEAEDAIVDAVRSGKF-NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR---PGANV  134 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---~gd~V  134 (301)
                      .+.+++.++..+++.-... .++-    ..+|.+....+. ....   .-+-++++++++||.+++++...+   -.|.|
T Consensus        61 hchp~VV~A~~kQmat~~tN~RFl----hd~lv~cA~~l~-stlP---eLsvc~F~NSGSEANDLALRLAR~ftkhqDvI  132 (452)
T KOG1403|consen   61 HCHPEVVRAGAKQMATISTNNRFL----HDELVQCARTLT-STLP---ELSVCFFVNSGSEANDLALRLARNFTKHQDVI  132 (452)
T ss_pred             cCCHHHHHHHHHHHhHhcccchhh----HHHHHHHHHHHh-hcCC---CceEEEEecCCchhhHHHHHHHHhhcccCceE
Confidence            3567788888877763211 1111    123333222222 1111   234678999999999999987753   34555


Q ss_pred             EEcCCCCcchHHHHHh-------cC---ceEEEeecCCCC-----CCC-----------CCHHHHHhhcc----cC-ccE
Q 022213          135 LLPRPGWPYYEGIAQR-------KQ---VEVRHFDLLPER-----NWE-----------VDLDAVEALAD----KN-TAA  183 (301)
Q Consensus       135 l~~~p~~~~~~~~~~~-------~g---~~~~~~~~~~~~-----~~~-----------~~~~~l~~~~~----~~-~~~  183 (301)
                      .+. ..|++.......       .|   .++.++.+-+-.     .+.           .-.+.+++.+.    +. ..+
T Consensus       133 tld-HAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvA  211 (452)
T KOG1403|consen  133 TLD-HAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVA  211 (452)
T ss_pred             EEe-chhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHH
Confidence            554 455543221110       11   122223221110     000           11233333332    11 222


Q ss_pred             EEEc-CCCCCcccCCCH-HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          184 MVII-NPGNPCGNVFTY-HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       184 v~l~-~p~nptG~~~~~-~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      .++. .-+.-.|.++++ ...+++++..+.+|-+.|.||+.-.|..-+..++.+..++--.+++   ++.|. ...|..+
T Consensus       212 AfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIV---tmgKp-mGNGhPV  287 (452)
T KOG1403|consen  212 AFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIV---TMGKP-MGNGHPV  287 (452)
T ss_pred             HHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchh---eeccc-CCCCCee
Confidence            3333 345566776665 5789999999999999999999999877778888887776444445   66888 5689999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHh
Q 022213          262 GWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       262 G~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      +.++...        ++.+.+..
T Consensus       288 a~Vattk--------eIA~Af~a  302 (452)
T KOG1403|consen  288 AAVATTK--------EIAQAFHA  302 (452)
T ss_pred             eEEeccH--------HHHHHhcc
Confidence            9998733        46666644

>PRK12566 glycine dehydrogenase; Provisional

Probab=96.51  E-value=0.19  Score=50.61  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCCCCCCC-----C----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcch
Q 022213           77 FNCYATNS-----G----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPYY  144 (301)
Q Consensus        77 ~~~Y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~  144 (301)
                      +..|.|-+     |    +-++..-++++.      +++-.|--+-.++|.+-+.++.+..   ++..+|+++.-.|+.+
T Consensus       108 yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt------Gm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~  181 (954)
T PRK12566        108 YTAYTPYQPEIAQGRLEALLNFQQMTIDLT------GLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQT  181 (954)
T ss_pred             hhcCCCCCchhhhHHHHHHHHHHHHHHHHh------CchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence            55676633     3    334455566665      3444465666666665554444442   2357899999999887


Q ss_pred             HHHHH----hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213          145 EGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV  217 (301)
Q Consensus       145 ~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii  217 (301)
                      ..+++    ..|++++.             +++++.+++++.++++.+|+. .|.+-+   +++|++.++++|.++|
T Consensus       182 ~~v~~t~~~~~g~~i~~-------------~~~~~~~~~~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~  241 (954)
T PRK12566        182 LSVLRTRAEGFGFELVV-------------DAVDNLAAHAVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC  241 (954)
T ss_pred             HHHHHHhhhcCCcEEEE-------------cchhhcCCCCEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE
Confidence            76554    34555543             334444545677788888874 788855   8999999999998766

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=95.81  E-value=0.19  Score=48.06  Aligned_cols=140  Identities=16%  Similarity=0.170  Sum_probs=94.4

Q ss_pred             CCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH-----HHHHHHHHHHhc-CCC----CEEEEcCCCCcch
Q 022213           78 NCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC-----KQAVEVILSVLA-RPG----ANVLLPRPGWPYY  144 (301)
Q Consensus        78 ~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~-----~~al~~~~~~l~-~~g----d~Vl~~~p~~~~~  144 (301)
                      +-|.|   .+|+.++-+.+.++|..-    ..-|++.+-+++     ..++ .++++.. ..|    ...++|...|...
T Consensus       569 HPF~P~eQaqGY~~lf~~Le~~Lc~i----TG~D~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGTN  643 (1001)
T KOG2040|consen  569 HPFAPVEQAQGYQQLFTELEKDLCEI----TGFDSFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGTN  643 (1001)
T ss_pred             CCCCchHHHhhHHHHHHHHHHHhhee----ecccceeecCCCCcccchhhH-HHHHHHHHhccCCcceeEEEeecccCCC
Confidence            34544   457777777777777441    234566653322     2333 3344443 344    3577888888877


Q ss_pred             HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213          145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV  221 (301)
Q Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~  221 (301)
                      ...++.+|.+++++..+...+  +|..+|+....+   +-.++.++.|+. .|+.  .+.+++++++.++||--+..|.+
T Consensus       644 PASA~MagmkvvpV~~~~~G~--id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGA  718 (1001)
T KOG2040|consen  644 PASAAMAGMKVVPVGCDANGN--IDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGA  718 (1001)
T ss_pred             hhhHHhcCCEEEEeeccCCCC--ccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCC
Confidence            888899999999998866544  899999887654   334667777753 2332  34699999999999999999998


Q ss_pred             Cccccc
Q 022213          222 YGHLTF  227 (301)
Q Consensus       222 y~~~~~  227 (301)
                      .-.-..
T Consensus       719 NMNAqV  724 (1001)
T KOG2040|consen  719 NMNAQV  724 (1001)
T ss_pred             Ccccee
Confidence            776443

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=95.81  E-value=0.16  Score=45.26  Aligned_cols=208  Identities=12%  Similarity=0.024  Sum_probs=102.9

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-----C-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-----T-NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-----~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +.+.||+.| |.     ..|+.+.+.+++-+.+.....++     . ..-...+.+...+.+.+-++++-+-+=+++-.|
T Consensus         4 ~~~~nFsaG-Pa-----~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGG   77 (365)
T COG1932           4 PRVYNFSAG-PA-----ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGG   77 (365)
T ss_pred             CCCCCCCCC-cc-----cCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCc
Confidence            567899999 32     23456666655555432211111     1 001122223333333333343322223455667


Q ss_pred             HHHHHHHHHHHhcCCCC--EEEEcCCCCcchHHHHHhcCceEEEeecC-CC--CCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          116 CKQAVEVILSVLARPGA--NVLLPRPGWPYYEGIAQRKQVEVRHFDLL-PE--RNWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      +|..+.++...|+..+.  .|..-..+-.++ ..++..+..+...... .+  .+..++++.+.  ++++..-|.+|.=.
T Consensus        78 at~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~-~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~Ne  154 (365)
T COG1932          78 ATGQFAMAPMNLLGKRGTDYVDTGAWSEFAI-KEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNE  154 (365)
T ss_pred             cHHHHHHHHHhhhcccCceeEeeeehhHhHH-HHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCC
Confidence            79999999999985443  244444333343 3334444321111111 11  22234444333  22222114444444


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN  270 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~  270 (301)
                      .-+|+-++  +...+.     .+.+++.|....-+.    ++..+..++     ++..|.-|.+|..|  ++.+++++  
T Consensus       155 Ti~Gv~v~--~~p~~~-----~~~~~v~D~SS~ils----r~iDvsk~d-----viyagaQKnlGpaG--ltvvIvr~--  214 (365)
T COG1932         155 TISGVEVP--ELPDIG-----SDGLLVADASSAILS----RPIDVSKYD-----VIYAGAQKNLGPAG--LTVVIVRP--  214 (365)
T ss_pred             cccceEcc--CCCCCC-----CCceEEEecccHHhc----CCCChhHcc-----eEEEehhhccCccc--eEEEEEcH--
Confidence            45677655  111111     127888898877644    334444443     66779999999888  77777743  


Q ss_pred             CcccchhHHHHHHh
Q 022213          271 GIFQKSGIIDSIKD  284 (301)
Q Consensus       271 ~~~~~~~~~~~~~~  284 (301)
                            ++++++..
T Consensus       215 ------~~l~r~~~  222 (365)
T COG1932         215 ------DLLERAES  222 (365)
T ss_pred             ------HHHhcccc
Confidence                  46666544

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=95.27  E-value=0.061  Score=47.59  Aligned_cols=86  Identities=21%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             CHHHHHhhccc-----CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          169 DLDAVEALADK-----NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       169 ~~~~l~~~~~~-----~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      .++++++.+.+     .+.+.++.-| +...|- -.+++..+++-++++||++.+|+||+.-.-.-++ .++....++..
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw~l~  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhcCCC
Confidence            35566666642     3556677777 444443 5678899999999999999999999997644333 34444444332


Q ss_pred             --CCEEEEecCcccCCCCc
Q 022213          242 --VPVITLGSISKRWLVPG  258 (301)
Q Consensus       242 --~~vi~~~s~SK~~~~~G  258 (301)
                        .+++   +|||-|-..|
T Consensus       333 ~PpD~v---TFSKK~q~gG  348 (484)
T KOG1405|consen  333 SPPDVV---TFSKKFQTGG  348 (484)
T ss_pred             CCccce---ehhhhhhcCc
Confidence              2355   8999976554

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=94.63  E-value=0.81  Score=39.95  Aligned_cols=206  Identities=15%  Similarity=0.103  Sum_probs=125.8

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCC-------CHHHHHHHHHHHhhhCCCCCCCCCEE
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSG-------IPPARRAIADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g-------~~~lr~~ia~~l~~~~~~~~~~~~i~  111 (301)
                      +++++|-|..+.-+     ..|..+...+..-++.+ +...|+...|       ......-++...      +...++|.
T Consensus        64 ~d~~~iYlcGNSLG-----LmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iV------GA~e~Eva  132 (465)
T KOG3846|consen   64 DDKPVIYLCGNSLG-----LMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIV------GAQENEVA  132 (465)
T ss_pred             CCCCeEEEeccccc-----cCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhc------cCCchhhh
Confidence            35566666544322     23445555565555542 1223333223       233444444443      45677999


Q ss_pred             EcCCHHHHHHHHHHHhcCCC---CEEEEcCCCCcc----hHHHHHhcCceEE--EeecCCC-CCCCCCHHHHHhhcccC-
Q 022213          112 VTLGCKQAVEVILSVLARPG---ANVLLPRPGWPY----YEGIAQRKQVEVR--HFDLLPE-RNWEVDLDAVEALADKN-  180 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~~~g---d~Vl~~~p~~~~----~~~~~~~~g~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~-  180 (301)
                      +.++-|--+..++.++.+|-   -+|+++.-.|++    ....++.+|+.+.  ++-+.+. ....+..+++.+.+.++ 
T Consensus       133 vmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkng  212 (465)
T KOG3846|consen  133 VMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNG  212 (465)
T ss_pred             hHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcC
Confidence            99999999999999998864   468888877764    3456677776532  2222232 22345666666666543 


Q ss_pred             --ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 --TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 --~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                        ..+|+++..+.-||..++   +.+|-..-+..|+++=.|-+++.    +.-+.-+..++-+   +.|++.-|......
T Consensus       213 DeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv----gNVpL~LHdWgVD---FACWCSYKYlnaGa  282 (465)
T KOG3846|consen  213 DEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV----GNVPLQLHDWGVD---FACWCSYKYLNAGA  282 (465)
T ss_pred             CeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh----cCCceEEeecCCc---eEEEeeecccccCC
Confidence              345677888999999999   77776544566889888988875    2234444455544   88889889754432


Q ss_pred             ceeEEEEe
Q 022213          259 WRFGWLVT  266 (301)
Q Consensus       259 ~rvG~~~~  266 (301)
                      -.+|-+.+
T Consensus       283 GgIgGlFv  290 (465)
T KOG3846|consen  283 GGIGGLFV  290 (465)
T ss_pred             Cccceeee
Confidence            23444444

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=85.96  E-value=5.2  Score=34.35  Aligned_cols=135  Identities=17%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             HHHHHHHhc--CCCC-EEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHHHHHhhcccC-cc-EEEEcCCCCCc
Q 022213          120 VEVILSVLA--RPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADKN-TA-AMVIINPGNPC  193 (301)
Q Consensus       120 l~~~~~~l~--~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~-~v~l~~p~npt  193 (301)
                      +.+++.++.  +|.. .|+-+.-.-.+.....-.+|.+++.+....+ +...-|++.++..+.+. .. .+++.+ ....
T Consensus        89 lslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~s-ttsc  167 (432)
T KOG3843|consen   89 LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHS-TTSC  167 (432)
T ss_pred             HHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEee-cccc
Confidence            444444553  4543 3443433333444555668888877765333 23345778888777652 33 233322 1111


Q ss_pred             ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE-EEEecCcccCCCC
Q 022213          194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVP  257 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v-i~~~s~SK~~~~~  257 (301)
                      =..-+++.+++|+.+|..|++.-|+.++|+.-.-  +....+..-..-+++ -++.|+-|.|..|
T Consensus       168 fapr~pd~leaiaaica~~diphivnnayglqse--e~i~~iaa~~~~grida~vqsldknf~vp  230 (432)
T KOG3843|consen  168 FAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSE--ECIHKIAAAAECGRIDAFVQSLDKNFMVP  230 (432)
T ss_pred             cCCCCCchHHHHHHHHHccCchhhhccccccchH--HHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence            1223456899999999999999999999985211  111111111111222 5667899998877

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=84.86  E-value=26  Score=30.61  Aligned_cols=194  Identities=13%  Similarity=0.039  Sum_probs=97.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-----CC--CCCCCC---CHHHHHHHHHHHhhhCCCCCCCCCE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-----NC--YATNSG---IPPARRAIADYLSRDLPYKLSADDV  110 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-----~~--Y~~~~g---~~~lr~~ia~~l~~~~~~~~~~~~i  110 (301)
                      +..++||+.| |.     .+|..|...+++-+-+-..     .+  ..+..+   +.+....+.+++    +++-.-+-+
T Consensus         5 ~~~vvnFaaG-PA-----klp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLl----niPdn~~vl   74 (370)
T KOG2790|consen    5 PERVVNFAAG-PA-----KLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELL----NIPDNYKVL   74 (370)
T ss_pred             ccceeecCCC-cc-----cCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHH----cCCCceeEE
Confidence            5789999998 32     3456666666654432110     00  111111   223333444444    322222234


Q ss_pred             EEcCCHHHHHHHHHHHhc--CCC---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCC-CCCCCHHHHHhhcccCccEE
Q 022213          111 YVTLGCKQAVEVILSVLA--RPG---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       111 ~~t~g~~~al~~~~~~l~--~~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v  184 (301)
                      ++-.|+|.-+.++...|+  +-|   |.|+.-+++--.+...-+......+..+.-... +-.+|.+.++..  .+.+-+
T Consensus        75 f~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~--~da~yv  152 (370)
T KOG2790|consen   75 FLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELN--PDASYV  152 (370)
T ss_pred             EEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccC--CCccEE
Confidence            566777777777777776  334   667766655545444333333333333332211 123455555432  223345


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      ++|.-...-|+-++     .+- +-.-++.+++.|-+.-.+.    ++..+..++     +++.+.-|..|.+|+-+
T Consensus       153 yyCaNETVHGVEf~-----~~P-~~~~~~~vlVaDmSSnflS----rpvDvsk~g-----vi~aGAQKN~G~aG~Tv  214 (370)
T KOG2790|consen  153 YYCANETVHGVEFD-----FIP-VNDPKGAVLVADMSSNFLS----RPVDVSKFG-----VIFAGAQKNVGPAGVTV  214 (370)
T ss_pred             EEecCceeeceecC-----CCC-CCCCCCceEEEecccchhc----CCccchhcc-----eEEeccccccCccccEE
Confidence            55543333355433     111 1124577888887766543    333344333     88899999999888544

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=81.95  E-value=14  Score=30.75  Aligned_cols=91  Identities=18%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCCCEEE-EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcc
Q 022213          116 CKQAVEVILSVLARPGANVL-LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG  194 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd~Vl-~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  194 (301)
                      +..+- .++++|.+.+-.|. +..+.-......++..|.+++..++       -|.+.|.++++ ....++++.+.+.  
T Consensus         8 G~~G~-~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~-------~~~~~l~~al~-g~d~v~~~~~~~~--   76 (233)
T PF05368_consen    8 GNQGR-SVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADY-------DDPESLVAALK-GVDAVFSVTPPSH--   76 (233)
T ss_dssp             SHHHH-HHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-T-------T-HHHHHHHHT-TCSEEEEESSCSC--
T ss_pred             cHHHH-HHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeeccc-------CCHHHHHHHHc-CCceEEeecCcch--
Confidence            44443 45555555664443 4444422234455678888876554       37888988887 4666666665432  


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEE
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVA  218 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~  218 (301)
                       ....+.-..+++.|++.|+-.++
T Consensus        77 -~~~~~~~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   77 -PSELEQQKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             -CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred             -hhhhhhhhhHHHhhhccccceEE
Confidence             23345678899999998875443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=80.87  E-value=15  Score=29.16  Aligned_cols=90  Identities=23%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213          110 VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      |+++.++...=..+++.|.+.|-+|....-.-.....   ..++++...++       .|.+.+.++++ +..+++.+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~-------~d~~~~~~al~-~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDL-------FDPDSVKAALK-GADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCT-------TCHHHHHHHHT-TSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeee-------hhhhhhhhhhh-hcchhhhhhh
Confidence            3444443333445666666666666654433332222   45666655443       57788888887 5666666654


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRV  214 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~  214 (301)
                      .++.    +....+.+++.|++.++
T Consensus        70 ~~~~----~~~~~~~~~~a~~~~~~   90 (183)
T PF13460_consen   70 PPPK----DVDAAKNIIEAAKKAGV   90 (183)
T ss_dssp             STTT----HHHHHHHHHHHHHHTTS
T ss_pred             hhcc----ccccccccccccccccc
Confidence            4333    26778899999998886

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		4e-54
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		3e-53
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		3e-35
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		3e-27
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		4e-18
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		1e-17
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		1e-17
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		4e-17
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		2e-16
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		2e-16
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		2e-16
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		2e-16
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		2e-16
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		9e-15
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		2e-14
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		6e-14
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		8e-14
2gb3_A	409	Crystal Structure Of Aspartate Aminotransferase (Tm		2e-13
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		3e-13
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		4e-13
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		5e-13
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		2e-12
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		2e-12
1x0m_A	403	A Human Kynurenine Aminotransferase Ii Homologue Fr		5e-12
3aov_A	448	Crystal Structure Of Pyrococcus Horikoshii Kynureni		5e-12
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		7e-12
3ihj_A	498	Human Alanine Aminotransferase 2 In Complex With Pl		8e-12
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		2e-11
2x5d_A	412	Crystal Structure Of A Probable Aminotransferase Fr		6e-11
3op7_A	375	Crystal Structure Of A Plp-Dependent Aminotransfera		7e-11
1wst_A	417	Crystal Structure Of Multiple Substrate Aminotransf		1e-10
3f6t_A	533	Crystal Structure Of Aspartate Aminotransferase (E.		2e-10
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		2e-10
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		3e-10
3tcm_A	500	Crystal Structure Of Alanine Aminotransferase From		3e-10
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		1e-09
3piu_A	410	High-Resolution Structure Of Native Malus Domestica		2e-09
1b8g_A	429	1-aminocyclopropane-1-carboxylate Synthase Length =		2e-09
1m7y_A	435	Crystal Structure Of Apple Acc Synthase In Complex		2e-09
1ynu_A	473	Crystal Structure Of Apple Acc Synthase In Complex		2e-09
3jtx_A	396	Crystal Structure Of Aminotransferase (np_283882.1)		1e-08
3b1c_A	392	Crystal Structure Of Betac-S Lyase From Streptococc		2e-08
2zc0_A	407	Crystal Structure Of An Archaeal Alanine:glyoxylate		3e-08
1iax_A	428	Crystal Structure Of Acc Synthase Complexed With Pl		3e-08
3l8a_A	421	Crystal Structure Of Metc From Streptococcus Mutans		6e-08
2dou_A	376	Probable N-Succinyldiaminopimelate Aminotransferase		8e-08
1c7n_A	399	Crystal Structure Of Cystalysin From Treponema Dent		1e-07
3dzz_A	391	Crystal Structure Of A Putative Plp-Dependent Amino		2e-07
2egy_A	397	Crystal Structure Of Lysn, Alpha-Aminoadipate Amino		2e-07
3ffh_A	363	The Crystal Structure Of Histidinol-phosphate Amino		3e-07
1gew_A	356	Crystal Structure Of Histidinol-Phosphate Aminotran		4e-07
1fg3_A	356	Crystal Structure Of L-Histidinol Phosphate Aminotr		4e-07
3ftb_A	361	The Crystal Structure Of The Histidinol-Phosphate A		4e-07
1vp4_A	425	Crystal Structure Of A Putative Aminotransferase (T		5e-07
2z1z_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		5e-07
4dgt_A	391	Crystal Structure Of Plp-Bound Putative Aminotransf		6e-07
3asa_A	400	Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr		8e-07
3nra_A	407	Crystal Structure Of An Aspartate Aminotransferase		1e-06
3eia_A	432	Crystal Structure Of K270q Variant Of Ll-Diaminopim		1e-06
3ei8_A	432	Crystal Structure Of K270n Variant Of Ll-Diaminopim		2e-06
2o1b_A	404	Structure Of Aminotransferase From Staphylococcus A		2e-06
2z20_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		2e-06
4ge7_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		3e-06
3h14_A	391	Crystal Structure Of A Putative Aminotransferase Fr		3e-06
3fdb_A	377	Crystal Structure Of A Putative Plp-Dependent Beta-		3e-06
4gdy_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		5e-06
3cq5_A	369	Histidinol-Phosphate Aminotransferase From Coryneba		1e-05
3cq4_A	376	Histidinol-Phosphate Aminotransferase From Coryneba		1e-05
3g7q_A	417	Crystal Structure Of Valine-Pyruvate Aminotransfera		2e-05
1d2f_A	390	X-Ray Structure Of Maly From Escherichia Coli: A Py		2e-05
2r2n_A	425	The Crystal Structure Of Human Kynurenine Aminotran		2e-05
2xh1_A	425	Crystal Structure Of Human Kat Ii-Inhibitor Complex		2e-05
3if2_A	444	Crystal Structure Of Putative Amino-Acid Aminotrans		2e-05
3ue8_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		2e-05
2vgz_A	427	Crystal Structure Of Human Kynurenine Aminotransfer		2e-05
3ezs_A	376	Crystal Structure Of Aminotransferase Aspb (Np_2074		2e-05
2qlr_A	425	Crystal Structure Of Human Kynurenine Aminotransfer		2e-05
3euc_A	367	Crystal Structure Of Histidinol-Phosphate Aminotran		3e-05
1lkc_A	364	Crystal Structure Of L-Threonine-O-3-Phosphate Deca		3e-05
3t32_B	383	Crystal Structure Of A Putative C-S Lyase From Baci		4e-05
3cq6_A	369	Histidinol-Phosphate Aminotransferase From Coryneba		5e-05
4fl0_A	456	Crystal Structure Of Ald1 From Arabidopsis Thaliana		1e-04
2x5f_A	430	Crystal Structure Of The Methicillin-Resistant Stap		1e-04
3qgu_A	449	L,L-Diaminopimelate Aminotransferase From Chalmydom		1e-04

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/248 (41%), Positives = 152/248 (61%), Gaps = 5/248 (2%)
Query: 29  LASIIDS--VNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGI 86
           + +I+D+  V  N  + V+ L  GDPT F    T             SGK+N YA + G 
Sbjct: 16  IRAIVDNMKVKPNPNKTVISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGY 75
Query: 87  PPARRAIADYL-SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
             +R  +A Y    + P  L A DV +T GC QA+E+ L+VLA PG N+L+PRPG+  Y 
Sbjct: 76  LSSREEVASYYHCPEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYR 133
Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
            +A+   +EV+ ++LLPE++WE+DL  +E+L D+ TA +V+ NP NPCG+VF+  HLQ+I
Sbjct: 134 TLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKI 193
Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
             +A +  V ++ADE+YG + F    Y PM    + VP+++ G ++ RWLVPGWR GW++
Sbjct: 194 LAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAXRWLVPGWRLGWIL 253
Query: 266 TNDPNGIF 273
            +D   IF
Sbjct: 254 IHDRRDIF 261

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 153/248 (61%), Gaps = 5/248 (2%)
Query: 29  LASIIDS--VNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGI 86
           + +I+D+  V  N  + ++ L  GDPT F    T             SGK+N YA + G 
Sbjct: 39  IRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGF 98
Query: 87  PPARRAIADYL-SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
             +R  IA Y    + P  L A DV +T GC QA+++ L+VLA PG N+L+PRPG+  Y+
Sbjct: 99  LSSREEIASYYHCPEAP--LEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYK 156
Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
            +A+   +EV+ ++LLPE++WE+DL  +E L D+ TA +++ NP NPCG+VF+  HLQ+I
Sbjct: 157 TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKI 216
Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
             +A +  V ++ADE+YG + F    Y P+    + VP+++ G ++KRWLVPGWR GW++
Sbjct: 217 LAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWIL 276
Query: 266 TNDPNGIF 273
            +D   IF
Sbjct: 277 IHDRRDIF 284

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 10/241 (4%)
Query: 41  PRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRD 100
           P+P++ L  GDPT      T             S + N Y    G P AR A+A +    
Sbjct: 32  PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNS 91
Query: 101 LPYK------LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE 154
             +K      +  D+V +  G    + + ++ +   G   L+P+PG+P+YE + +   + 
Sbjct: 92  FVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIG 151
Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +  ++  PE +WE DLD +  L D  T  +++ NP NPCG+ F+  H+++I  +A +LR+
Sbjct: 152 MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL 211
Query: 215 MVVADEVYGHLTF-GSIP---YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN 270
            + +DE+Y  + F G  P   +T +  F + VP + LG  +   +VPGWR GWL+  DP+
Sbjct: 212 PLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAXNLVVPGWRLGWLLYVDPH 271
Query: 271 G 271
           G
Sbjct: 272 G 272

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 3/227 (1%)
Query: 44  VVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           V+ L  GDP  F  F+             + G  N Y  + G+P  R+AI +   R    
Sbjct: 40  VIRLNIGDPVKFD-FQPPEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGV 97
Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
            ++ DDV VT    +A+++I   L  PG  +L+P P +P Y G+ +    +   +  + E
Sbjct: 98  DITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEE 157
Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
            +W+ D+D +       T A+ +INP NP G ++    L+EI  +A +  + V++DE+Y 
Sbjct: 158 EDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYD 217
Query: 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN 270
            +T+     +P G     VPVI +  +SK +   GWR G++   DP 
Sbjct: 218 LMTYEGEHISP-GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPE 263

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 21/198 (10%)
Query: 75  GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV 134
           G+ + YA  +G+P  R A+A+       + +  + V VT G  +A+ V+L  L  PG  V
Sbjct: 52  GRQDQYAPPAGLPALREALAE------EFAVEPESVVVTSGATEALYVLLQSLVGPGDEV 105
Query: 135 LLPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192
           ++  P +  Y  +      +  +   DL PE  + +DL A+E      T A+++  P NP
Sbjct: 106 VVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKALTPRTRALLLNTPMNP 164
Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP-----YTPMGLFGSIVPVITL 247
            G VF    L+ IA +AR   + +++DEVY  L +G  P     + P   F       T+
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTF-------TV 217
Query: 248 GSISKRWLVPGWRFGWLV 265
           GS  KR    G+R GW+V
Sbjct: 218 GSAGKRLEATGYRVGWIV 235

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 42  RPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           + V+ LG G+P     F T              G    Y  N G+   R AIA+ L +  
Sbjct: 25  KDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQ- 78
Query: 102 PYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQVEV 155
              + AD   ++ V LG  QA  + LS   + G  VL+P P +  Y     +A  K VEV
Sbjct: 79  -NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEV 137
Query: 156 RHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM 215
             ++   E  + +++D ++      T A++I +P NP G V T   L+EIA+   +  ++
Sbjct: 138 PTYE---EDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLI 194
Query: 216 VVADEVYGHLTFGSI-PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264
           V++DEVY H  +     Y+   L G     IT+   SK + + GWR G++
Sbjct: 195 VISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFV 244

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 42  RPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           + V+ LG G+P     F T              G    Y  N G+   R AIA+ L +  
Sbjct: 26  KDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQ- 79
Query: 102 PYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQVEV 155
              + AD   ++ V LG  QA  + LS   + G  VL+P P +  Y     +A  K VEV
Sbjct: 80  -NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEV 138
Query: 156 RHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM 215
             ++   E  + +++D ++      T A++I +P NP G V T   L+EIA+   +  ++
Sbjct: 139 PTYE---EDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLI 195
Query: 216 VVADEVYGHLTFGSI-PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264
           V++DEVY H  +     Y+   L G     IT+   SK + + GWR G++
Sbjct: 196 VISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFV 245

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G KQA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +K + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G  QA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +K + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G  QA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +K + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G  QA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +K + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G  QA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +K + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           YA  +GIP  R A+A+   R+    ++ ++  VT+G KQA+  +   +  PG  V++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y  + +     V   + LPE  +  D + V       T A+V+ +P NP G V+  
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVP 257
             L+ +A +A +    +V+DE+Y HL +    ++P    G + P   +T+   +  + + 
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAXAFAMT 239
Query: 258 GWRFGW 263
           GWR G+
Sbjct: 240 GWRIGY 245

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 85/189 (44%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y    GI   R  IA  +       +S D V VT G KQA+      L  PG  V++  P
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            W  Y          V   +    +N++  L+ VE L    T A++I +P NP G V+  
Sbjct: 134 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
             L+ +  +A+K    +++DEVY  L +     + + +      ++ +   SK   + GW
Sbjct: 194 EFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 253
Query: 260 RFGWLVTND 268
           R G+L++++
Sbjct: 254 RVGYLISSE 262

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 10/251 (3%)
Query: 19  AAPAVTVKTSLASIIDS---VNKNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSG 75
           AA   +V  S+  IID+     K +   V     G+P     F T              G
Sbjct: 4   AARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQG 59
Query: 76  KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL 135
           K   Y   +G P  R AIA  L RD      AD++ VT G KQ++  ++  +  PG  V+
Sbjct: 60  KTR-YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVI 118
Query: 136 LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN 195
           +P P W  Y  + +  +          E  ++V  + +       T  +V   P NP G 
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGM 178
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKR 253
           V+T   ++ IA++A +  + V++DE+Y  + +    +  +G     +    +     +K 
Sbjct: 179 VYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKT 238
Query: 254 WLVPGWRFGWL 264
           + + GWR G+L
Sbjct: 239 YAMTGWRVGFL 249

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Query: 78  NCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARPGANVLL 136
           N Y    G P   +A++   S+ +   ++   +V VT+G  +A+   +      G  V++
Sbjct: 71  NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVII 130
Query: 137 PRPGWPYYEGIAQRKQVEVRHFDLLPER--------NWEVDLDAVEALADKNTAAMVIIN 188
             P +  YE + +      R   L P +        +W +D + +EAL ++ T  ++I  
Sbjct: 131 IEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINT 190
Query: 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM-GLFGSIVPVITL 247
           P NP G V     L+ +A + +K  V+ V+DEVY H+ F    +  +  L G     IT+
Sbjct: 191 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI 250
Query: 248 GSISKRWLVPGWRFGW 263
           GS  K + + GW+ GW
Sbjct: 251 GSAGKTFSLTGWKIGW 266

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWE 167
           +V VT+G  +A+   +  L  PG+ VLL  P +  Y  +            L+P+ R + 
Sbjct: 88  EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFA 147
Query: 168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227
           +D DA+       T A++I +P NP G V +   L  IAE+A    ++V+ DEVY HL F
Sbjct: 148 LDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVF 207
Query: 228 GSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGW 263
               + P+  F G     IT+ S +  +   GW+ GW
Sbjct: 208 DHARHLPLAGFDGMAERTITISSAAXMFNCTGWKIGW 244

>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y+ ++GI   R A A Y  R     +  ++V VT G  +A+    +V+A PG  +L+  P
Sbjct: 75  YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            +  Y   A+   V++       E  + +  + +E+  ++ T  +V+ NP NP G V+  
Sbjct: 135 FYANYNAFAKIAGVKLIPVTRRXEEGFAIPQN-LESFINERTKGIVLSNPCNPTGVVYGK 193
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-----PVITLGSISKRW 254
              + + E+A +  + ++ DEVY  + F        G F S +      V+ + S+S ++
Sbjct: 194 DEXRYLVEIAERHGLFLIVDEVYSEIVF-------RGEFASALSIESDKVVVIDSVSXKF 246
Query: 255 LVPGWRFGWLVTNDPNGI 272
              G R G L+T +   I
Sbjct: 247 SACGARVGCLITRNEELI 264

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%)
Query: 78  NCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARPGANVLL 136
           N Y    G P   +A++   S+ +   ++   +V VT+G  +A+   +      G  V++
Sbjct: 71  NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVII 130
Query: 137 PRPGWPYYEGIAQRKQVEVRHFDLLPER--------NWEVDLDAVEALADKNTAAMVIIN 188
             P +  YE + +      R   L P +        +W +D + +EAL ++ T  ++I  
Sbjct: 131 IEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINT 190
Query: 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM-GLFGSIVPVITL 247
           P NP G V     L+ +A + +K  V+ V+DEVY H+ F    +  +  L G     IT+
Sbjct: 191 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI 250
Query: 248 GSISKRWLVPGWRFGW 263
           GS    + + GW+ GW
Sbjct: 251 GSAGXTFSLTGWKIGW 266

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 78  NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137
           N Y+   G P    ++    S     +L A++V VT G  + +   L  L   G  V++ 
Sbjct: 89  NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVF 148
Query: 138 RPGWPYYEGIAQRKQVEVRHFDLLP-----ERN-----WEVDLDAVEALADKNTAAMVII 187
            P +  Y    +    +V +  + P     +RN     W +D +  E      T A++I 
Sbjct: 149 EPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIIN 208
Query: 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL 247
            P NP G VFT   L  +  +  K  V++++DEVY HL F    +T +      +  +TL
Sbjct: 209 TPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTL 267
Query: 248 --GSISKRWLVPGWRFGWLVT 266
             GS    +   GWR GW+++
Sbjct: 268 TVGSAGXSFAATGWRIGWVLS 288

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 74  SGKF--NCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARP 130
           SG F  N Y    G PP  + +A +    L  ++    +V VT+G   A+      L   
Sbjct: 55  SGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDE 114
Query: 131 GANVLLPRPGWPYYEGIAQR----------KQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           G  V++  P +  YE +             K   +++ +L    NW++D   +       
Sbjct: 115 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174
Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY--------GHLTFGSIPY 232
           T A+V+  P NP G VF+   L+ +A + ++  V+ + DEVY         H++  S+P 
Sbjct: 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLP- 233
Query: 233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
                 G     +T+GS  K +   GW+ GW++  D
Sbjct: 234 ------GMWERTLTIGSAGKTFSATGWKVGWVLGPD 263

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 74  SGKF--NCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARP 130
           SG F  N Y    G PP  + +A +    L  ++    +V VT+G   A+      L   
Sbjct: 55  SGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDE 114
Query: 131 GANVLLPRPGWPYYEGIAQR----------KQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           G  V++  P +  YE +             K   +++ +L    NW++D   +       
Sbjct: 115 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174
Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY--------GHLTFGSIPY 232
           T A+V+  P NP G VF+   L+ +A + ++  V+ + DEVY         H++  S+P 
Sbjct: 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLP- 233
Query: 233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
                 G     +T+GS    +   GW+ GW++  D
Sbjct: 234 ------GMWERTLTIGSAGXTFSATGWKVGWVLGPD 263

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 74  SGKF--NCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARP 130
           SG F  N Y    G PP  + +A +    L  ++    +V VT+G   A+      L   
Sbjct: 55  SGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDE 114
Query: 131 GANVLLPRPGWPYYEGIAQR----------KQVEVRHFDLLPERNWEVDLDAVEALADKN 180
           G  V++  P +  YE +             K   +++ +L    NW++D   +       
Sbjct: 115 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174
Query: 181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY--------GHLTFGSIPY 232
           T A+V+  P NP G VF+   L+ +A + ++  V+ + DEVY         H++  S+P 
Sbjct: 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLP- 233
Query: 233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
                 G     +T+GS    +   GW+ GW++  D
Sbjct: 234 ------GMWERTLTIGSAGXTFSATGWKVGWVLGPD 263

>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPR 138
           Y T  G  P R  +  +L +   Y +S D D+ +T G +QA+++I  V   PG  V++  
Sbjct: 69  YGTTKGFTPLRETLMKWLGKR--YGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 126
Query: 139 P-------GWPYYEGIAQRKQV----EVRHFDLLPERNWEVDLDAVEALADKNTAAMVII 187
           P        + +YE   Q  Q+    E    ++L E+     L  +++   K      + 
Sbjct: 127 PTYLAALQAFNFYE--PQYIQIPLDDEGMKVEILEEK-----LKELKSQGKKVKVVYTVP 179
Query: 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL 247
              NP G        + + E+A +   +VV D+ YG L +   P   +    +   VI L
Sbjct: 180 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYL 239
Query: 248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD-CLSIYSDI 292
           G+ SK  L PG+R GW+V  DP GI +K  I     D C +++  +
Sbjct: 240 GTFSK-ILAPGFRIGWMV-GDP-GIIRKMEIAKQSTDLCTNVFGQV 282

>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPR 138
           Y T  G  P R  +  +L +   Y +S D D+ +T G +QA+++I  V   PG  V++  
Sbjct: 114 YGTTKGFTPLRETLMKWLGKR--YGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 171
Query: 139 P-------GWPYYEGIAQRKQV----EVRHFDLLPERNWEVDLDAVEALADKNTAAMVII 187
           P        + +YE   Q  Q+    E    ++L E+     L  +++   K      + 
Sbjct: 172 PTYLAALQAFNFYE--PQYIQIPLDDEGMKVEILEEK-----LKELKSQGKKVKVVYTVP 224
Query: 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL 247
              NP G        + + E+A +   +VV D+ YG L +   P   +    +   VI L
Sbjct: 225 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYL 284
Query: 248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD-CLSIYSDI 292
           G+ SK  L PG+R GW+V  DP GI +K  I     D C +++  +
Sbjct: 285 GTFSK-ILAPGFRIGWMV-GDP-GIIRKMEIAKQSTDLCTNVFGQV 327

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 17/231 (7%)
Query: 38  KNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYL 97
           +++ + V+ L  G+P     F T            + GK + Y  + GI   R  I++  
Sbjct: 25  ESEGKKVIHLEIGEPD----FNTPKPIVDEGIKSLKEGKTH-YTDSRGILELREKISELY 79
Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
                  +  D++ +T G    +   LS +   G  VL+  P +P Y+   +    +   
Sbjct: 80  KDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVF 139
Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
            D   E          EAL+DK T A++I +P NP G V      +EI E A +    ++
Sbjct: 140 CDFTVE-------SLEEALSDK-TKAIIINSPSNPLGEVID----REIYEFAYENIPYII 187
Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
           +DE+Y  L +    Y+ +    ++   I +   S  + + GWR G++++ND
Sbjct: 188 SDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSXLYAMTGWRIGYVISND 238

>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 80  YATNSGIPPARRAIADYLSR-DLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN----V 134
           Y+ + G+   R  +A Y++R D       D++Y+T G    +  IL +L   G      V
Sbjct: 125 YSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGV 184
Query: 135 LLPRPGWPYYEG-IAQRKQVEVRHFDLLPERNWEVDLD----AVEALADK-NTAAMVIIN 188
           ++P P +P Y   I++   ++V ++ L  E  W ++++    AV+   D  +   + IIN
Sbjct: 185 MIPIPQYPLYSAVISELDAIQVNYY-LDEENCWALNVNELRRAVQEAKDHCDPKVLCIIN 243
Query: 189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG---------HLTFGSIPYTPMGLFG 239
           PGNP G V +   ++++   A + ++ ++ADEVY            +F  + Y     + 
Sbjct: 244 PGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYS 303
Query: 240 SIVPVITLGSISKRWLVP-GWRFGWL 264
           S V + +  S SK ++   G+R G++
Sbjct: 304 SNVELASFHSTSKGYMGECGYRGGYM 329

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 78  NCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLL 136
           N YA  +G+   R AIA    R   Y+  AD D+ VT G  +A+   ++ L R G  V+ 
Sbjct: 61  NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVIC 120
Query: 137 PRPGWPYYE-------GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP 189
             P +  Y        GI +R  ++  HF         VD     AL  + T  +++  P
Sbjct: 121 FDPSYDSYAPAIALSGGIVKRMALQPPHF--------RVDWQEFAALLSERTRLVILNTP 172
Query: 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLG 248
            NP   V+       + +      + V++DEVY H+ F    +  +     +    + + 
Sbjct: 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVS 232
Query: 249 SISKRWLVPGWRFGWLVTNDP 269
           S  K + + GW+ G+ V   P
Sbjct: 233 SFGKTYHMTGWKVGYCVAPAP 253

>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 6/194 (3%)
Query: 78  NCYATNSGIPPARRAIADYLSRDLPYKLSAD---DVYVTLGCKQAVEVILSVLARPGANV 134
           + Y+T+ GIP  RRAI+ +  RD  Y +  D   +  VT+G K+ +  ++      G  +
Sbjct: 69  HGYSTSRGIPRLRRAISHWY-RDR-YDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTI 126
Query: 135 LLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194
           L+P P +P +   A     +VR   L+P  ++  +L+     +      M++  P NP  
Sbjct: 127 LVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTA 186
Query: 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKR 253
                   + +  +A++  VMVV D  Y  + + G    + M + G+    +   ++SK 
Sbjct: 187 QCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS 246
Query: 254 WLVPGWRFGWLVTN 267
           + + GWR G++V N
Sbjct: 247 YNMAGWRIGFMVGN 260

>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y    G P  +++++   +   P     + +  T G   A  ++L  L  PG +V+   P
Sbjct: 59  YGWIEGSPAFKKSVSQLYTGVKP-----EQILQTNGATGANLLVLYSLIEPGDHVISLYP 113
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            +     I +    EV  + +  E  W  DL+ +  L    T  + I N  NP G V   
Sbjct: 114 TYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKXICINNANNPTGAVXDR 173
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV----ITLGSISKRWL 255
            +L+E+ E+A ++   +++DEVY   +   +P        SI+ V    I + S+S  + 
Sbjct: 174 TYLEELVEIASEVGAYILSDEVYRSFSELDVP--------SIIEVYDKGIAVNSLSXTYS 225
Query: 256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKD----CLSIYSDI 292
           +PG R GW+  N      Q + I+   +D    C  ++ D+
Sbjct: 226 LPGIRIGWVAAN-----HQVTDILRDYRDYTXICAGVFDDL 261

>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 10/216 (4%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y T  G  P R A+A ++ +     +S  ++    G +QA+++I  V   PG  +++  P
Sbjct: 79  YGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 138
Query: 140 GWPYYEGIAQRKQVEVRHFDL-LPERNWEVDLDAVEALADKNTAAMVII-----NPGNPC 193
              Y   I   K  +     + L ++   VDL   +    +     V I        NP 
Sbjct: 139 T--YLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA 196
Query: 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR 253
           G   +    +++ E+A +   ++V D  Y  L +   P  P+  F     VI LG+ SK 
Sbjct: 197 GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK- 255
Query: 254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIY 289
            L PG+R GW+  + P+ I +      SI  C + +
Sbjct: 256 ILAPGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTF 290

>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 93  IADYLSRDLPYK----LSADDVYVTLGCKQAVEVILSVLA-----RPGANVLLPRPGWPY 143
           I +Y  ++L YK        D++ T G   A+      LA     + G  + +  P +  
Sbjct: 146 IINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTP 205
Query: 144 YEGIAQRKQVEVRHFDL--LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201
           Y  I + K  E+   DL    + +WE++ + +E L D +  A++++NP NP    F  + 
Sbjct: 206 YLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNA 265
Query: 202 LQEIAEMARKL-RVMVVADEVYGHL--TFGSIPYTPMGLFGSIVPVIT--LGSISKRWLV 256
           L  I +   K  ++ +++DEVYG     F SI         S+VP  T  + S S  +  
Sbjct: 266 LNAIKQAVEKNPKLXIISDEVYGAFVPNFKSIY--------SVVPYNTXLVYSYSXLFGC 317
Query: 257 PGWRFGWLVTNDPN 270
            GWR G +  N+ N
Sbjct: 318 TGWRLGVIALNEKN 331

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 22/215 (10%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP-R 138
           Y +  G    R AIA++L+       +AD++Y T G   ++ +    L     +  +   
Sbjct: 72  YTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYDEFITIA 131
Query: 139 PGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN 195
           P +P Y+     A  + VEV         ++++D DA+E   + +T  ++I +P NP G 
Sbjct: 132 PYFPEYKVFVNAAGARLVEVP----ADTEHFQIDFDALEERINAHTRGVIINSPNNPSGT 187
Query: 196 VFTYHHLQEIAEMARKLR------VMVVADEVYGHLTFGSI--PYTPMGLFGSIVPVITL 247
           V++   +++++++  K        + ++ADE Y  + +  I  P+       ++V     
Sbjct: 188 VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCY--- 244
Query: 248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI 282
            S SK   +PG R G+++   P+ ++ K+ +  ++
Sbjct: 245 -SYSKSLSLPGERIGYVLV--PDEVYDKAELYAAV 276

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 13/201 (6%)
Query: 77  FNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARPGANVL 135
            N Y    G P   +A++    +    ++   +++ V +G   ++   +  L  PG  V+
Sbjct: 54  MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVI 113
Query: 136 LPRPGWPYYEGIAQRKQVEVRHFDLLPER----------NWEVDLDAVEALADKNTAAMV 185
           +  P +  YE +  R    V  F  L  +          +W  D   +E+     T A++
Sbjct: 114 IMVPFYDCYEPMV-RMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAII 172
Query: 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-LFGSIVPV 244
           +  P NP G V+T   LQ IA++  K   + ++DEVY  L +    +  +  L G     
Sbjct: 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERT 232
Query: 245 ITLGSISKRWLVPGWRFGWLV 265
           IT+GS  K + V GW+ GW +
Sbjct: 233 ITIGSAGKTFSVTGWKLGWSI 253

>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-VLLPR 138
           Y+ + GI   R AIA  ++    +  +ADD+++T G    V +++ +L R   + +L+P 
Sbjct: 130 YSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPI 189
Query: 139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL-DAVEALADK-----NTAAMVIINPGNP 192
           P +P Y          +  + L     W ++  D  + L D      N  A+V+INPGNP
Sbjct: 190 PQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249
Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
            G V    +  +I +  +   ++++ADEVY
Sbjct: 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVY 279

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 13/201 (6%)
Query: 77  FNCYATNSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARPGANVL 135
            N Y    G P   +A++    +    ++   +++ V +G   ++   +  L  PG  V+
Sbjct: 54  MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVI 113
Query: 136 LPRPGWPYYEGIAQRKQVEVRHFDLLPER----------NWEVDLDAVEALADKNTAAMV 185
           +  P +  YE +  R    V  F  L  +          +W  D   +E+     T A++
Sbjct: 114 IMVPFYDCYEPMV-RMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAII 172
Query: 186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-LFGSIVPV 244
           +  P NP G V+T   LQ IA++  K   + ++DEVY  L +    +  +  L G     
Sbjct: 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERT 232
Query: 245 ITLGSISKRWLVPGWRFGWLV 265
           IT+GS    + V GW+ GW +
Sbjct: 233 ITIGSAGXTFSVTGWKLGWSI 253

>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 85  GIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+P  ++A+ D+++     K++ D   + +T G   A E  +  LA PG  VL+P P +P
Sbjct: 85  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 144
Query: 143 YYE-GIAQRKQVEVRHFDLLPERNWEVDLDAVEAL---ADKNT---AAMVIINPGNPCGN 195
            ++  +  R  VE+          +++   A+E     A+K       +++ NP NP G 
Sbjct: 145 GFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT 204
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI---------- 245
             T + L  +        + +++DE+Y    F S        F S++ V+          
Sbjct: 205 TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS------FISVMEVLKDRNCDENSE 258
Query: 246 ------TLGSISKRWLVPGWRFGWLVTND 268
                  + S+SK   +PG+R G + +ND
Sbjct: 259 VWQRVHVVYSLSKDLGLPGFRVGAIYSND 287

>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 85  GIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+P  ++A+ D+++     K++ D   + +T G   A E  +  LA PG  VL+P P +P
Sbjct: 87  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 146
Query: 143 YYE-GIAQRKQVEVRHFDLLPERNWEVDLDAVEAL---ADKNT---AAMVIINPGNPCGN 195
            ++  +  R  VE+          +++   A+E     A+K       +++ NP NP G 
Sbjct: 147 GFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT 206
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI---------- 245
             T + L  +        + +++DE+Y    F S        F S++ V+          
Sbjct: 207 TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS------FISVMEVLKDRNCDENSE 260
Query: 246 ------TLGSISKRWLVPGWRFGWLVTND 268
                  + S+SK   +PG+R G + +ND
Sbjct: 261 VWQRVHVVYSLSKDLGLPGFRVGAIYSND 289

>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 85  GIPPARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+P  ++A+ D+++     K++ D   + +T G   A E  +  LA PG  VL+P P +P
Sbjct: 87  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 146
Query: 143 YYE-GIAQRKQVEVRHFDLLPERNWEVDLDAVEAL---ADKNT---AAMVIINPGNPCGN 195
            ++  +  R  VE+          +++   A+E     A+K       +++ NP NP G 
Sbjct: 147 GFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT 206
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI---------- 245
             T + L  +        + +++DE+Y    F S        F S++ V+          
Sbjct: 207 TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS------FISVMEVLKDRNCDENSE 260
Query: 246 ------TLGSISKRWLVPGWRFGWLVTND 268
                  + S+SK   +PG+R G + +ND
Sbjct: 261 VWQRVHVVYSLSKDLGLPGFRVGAIYSND 289

>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 80  YATNSGIPPARRAIADYLSRDLP-YKLSAD-DVYVTLGCKQAVEVILSVLARPGAN---- 133
           Y   +G+P  R+A A++L R      + AD ++   LG ++A+   +  +  P ++    
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 134 -VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP 192
            ++ P P +  YEG       E+ HF   P  ++  D  ++     K T  + + +P NP
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEI-HFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNP 180
Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-------LFGSIVPVI 245
            G+V      +E+ ++  K   ++ +DE Y  + F      P+G       L  S   ++
Sbjct: 181 SGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDG--NKPLGCLQAAAQLGRSRQKLL 238
Query: 246 TLGSISKRWLVPGWRFGWLVTN 267
              S+S R  VPG R G++  +
Sbjct: 239 XFTSLSXRSNVPGLRSGFVAGD 260

>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 96/211 (45%), Gaps = 20/211 (9%)
Query: 91  RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---I 147
           +A+ D+   +  Y    +D+    G   A+ + +    + G  VL+  P +P +     +
Sbjct: 73  QAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRL 132
Query: 148 AQRKQVEVRHFDLLPERN--WEVDLDAVEA-LADKNTAAMVIINPGNPCGNVFTYHHLQE 204
             RK V     + L E N  +++D + +E  + + +    ++ NP NP G V+    L++
Sbjct: 133 NNRKLVS----NSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQ 188
Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGW 259
           I  + +K  V++V+DE++  LT     +     F ++ P      + L S +K + + G 
Sbjct: 189 IGHLCQKHHVILVSDEIHQDLTLFGHEHVS---FNTVSPDFKDFALVLSSATKTFNIAGT 245
Query: 260 RFGWLVTNDPN--GIFQKSGIIDSIKDCLSI 288
           +  + +  +P     F+   ++++  +  S+
Sbjct: 246 KNSYAIIENPTLCAQFKHQQLVNNHHEVSSL 276

>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 79  CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR 138
            Y   +GIP  R  +A +L +    ++S +++ +T+G   A++++  VL  PG  V+   
Sbjct: 70  MYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITEN 129
Query: 139 PGW-----PYYEGIAQRKQVEVRH----FDLLPERNWEVDLDAVEALADKNTAAMVIINP 189
           P +      + +  A+ + V V +     DLL E+  E     ++A   K      I   
Sbjct: 130 PSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKE-----LKAKGQKVKLIYTIPTG 184
Query: 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS 249
            NP G   +    + + E+A K  ++++ D  Y  + +      P+    +   VI  G+
Sbjct: 185 QNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGT 244
Query: 250 ISKRWLVPGWRFGWLVTN 267
           +SK  L  G+R GW++  
Sbjct: 245 LSK-VLGTGFRIGWIIAE 261

>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 85  GIPPARRAIADYLSRDLPYKLSADDVYVTL--GCKQAVEVILSVLARPGANVLLPRPGWP 142
           G+P  R+AIA ++ +    ++  D   V +  G   A E I+  LA PG   L+P P +P
Sbjct: 84  GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYP 143
Query: 143 YY-EGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADKNTA-----AMVIINPGNPCGN 195
            +   +  R  V++         N+++   AV EA  +   +      +++ NP NP G 
Sbjct: 144 AFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGT 203
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG--------LFGSIVPVITL 247
                 L+ +     +  + +V DE+Y    F +  +  +          + +   V  +
Sbjct: 204 TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263
Query: 248 GSISKRWLVPGWRFG 262
            S+SK   +PG+R G
Sbjct: 264 YSLSKDMGLPGFRVG 278

>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 4/190 (2%)
Query: 75  GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV 134
           G+ + +  N       +A+ D+  ++  Y +  +D+    G   A+ + L   +  G  V
Sbjct: 87  GREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAV 146
Query: 135 LLPRP-GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA-LADKNTAAMVIINPGNP 192
           L+  P  +P+   I       V +   +    +E+D + +E  + D N    ++ +P NP
Sbjct: 147 LINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP 206
Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVP-VITLGSI 250
            G V+    L +IAE+ +K  V++V+DE++  L  FG+  ++   L  S     I L S 
Sbjct: 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSA 266
Query: 251 SKRWLVPGWR 260
           +K + + G +
Sbjct: 267 TKTFNIAGTK 276

>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWE 167
           +    +G ++ +  +L  L  P   +LLP   +P Y G A  +   +R F L+P R +  
Sbjct: 89  EALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAA--RVASLRTF-LIPLREDGL 145
Query: 168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF 227
            DL AV     +    +++  P NP G V  + + +E   +ARK  + ++ D  Y    +
Sbjct: 146 ADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVY 205
Query: 228 GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP--NGIFQKSGIID 280
                +P+ L G+   V+ L S+SK + + G+R G+ + ++     + +  G+ID
Sbjct: 206 EGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVID 260

>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP-GWPYYEGIA 148
           ++ +  ++     + +  D +  T G   AV   +    +PG  V++  P  +P++  I 
Sbjct: 72  KKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK 131
Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAE 207
            +++  +    L  +  + +D   +E L+ DKN  A++  +P NP G V+    LQ+I +
Sbjct: 132 NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKD 191
Query: 208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-----VPVITLGSISKRWLVPGWRFG 262
           +  K  +M+ +DE++  L      +T   +F SI        IT  + SK + + G    
Sbjct: 192 IVLKSDLMLWSDEIHFDLIMPGYEHT---VFQSIDEQLADKTITFTAPSKTFNIAGMGMS 248
Query: 263 WLVTNDPN 270
            ++  +P+
Sbjct: 249 NIIIKNPD 256

>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 91  RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR 150
           +A+AD+   +   +   D      G   A+   +     PG  +L+  P +  +  + + 
Sbjct: 69  KAVADWEEIEHRARPKEDWCVFASGVVPAISAXVRQFTSPGDQILVQEPVYNXFYSVIEG 128
Query: 151 KQVEVRHFDLLPER-----NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
               V   DL+ E      NW    D  E LA  +    V  NP NP G  ++   ++ I
Sbjct: 129 NGRRVISSDLIYENSKYSVNW---ADLEEKLATPSVRXXVFCNPHNPIGYAWSEEEVKRI 185
Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV 256
           AE+  K +V++++DE++G L               I P  T+   +K W+V
Sbjct: 186 AELCAKHQVLLISDEIHGDLVLTD---------EDITPAFTVDWDAKNWVV 227

>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y+   G  P R  +A+++       +  ++V +T G +QA++++  V    G+ VLL  P
Sbjct: 70  YSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG--NPCGNVF 197
               Y G  Q  +++   F  +P      DLDA+E +  +     + + P   NP G + 
Sbjct: 124 S---YMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLT 180
Query: 198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IP-YTPMGLFGSIVPVITLGSISKRW 254
                + + +M  +  ++VV D+ Y  L FG   +P    +        VI LGS SK  
Sbjct: 181 PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSK-V 239
Query: 255 LVPGWRFGWLVTN 267
           L PG R  + V +
Sbjct: 240 LSPGLRVAFAVAH 252

>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R+ +AD+      Y+L  +++  T G  + +E++  VL     N +   P +  Y   A 
Sbjct: 73  RKEVADF------YQLEEEELIFTAGVDELIELLTRVLLDTTTNTVXATPTFVQYRQNAL 126
Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
            +  EVR   LL  ++ E DL+      D+ T  + I NP NP GN   Y  L +I    
Sbjct: 127 IEGAEVREIPLL--QDGEHDLEGXLNAIDEKTTIVWICNPNNPTGN---YIELADIQAFL 181
Query: 210 RKL--RVMVVADEVY 222
            ++   V+VV DE Y
Sbjct: 182 DRVPSDVLVVLDEAY 196

>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 108 DDVYVTLGCKQAVEVILSVLARPGAN-VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW 166
           + V V+ G  + +E+++     PG + +L   P +  Y   A+   VE R    L   NW
Sbjct: 76  EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLD--NW 133
Query: 167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226
           ++DL  +    D     + + +P NP G +      + + E+ R  + +VVADE Y    
Sbjct: 134 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KAIVVADEAY---- 187
Query: 227 FGSIPYTPM----GLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
              I + P     G       +  L ++SK + + G R G+ + N+
Sbjct: 188 ---IEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE 230

>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 108 DDVYVTLGCKQAVEVILSVLARPGAN-VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW 166
           + V V+ G  + +E+++     PG + +L   P +  Y   A+   VE R    L   NW
Sbjct: 76  EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGXYSVSAETIGVECRTVPTLD--NW 133
Query: 167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT 226
           ++DL  +    D     + + +P NP G +      + + E+ R  + +VVADE Y    
Sbjct: 134 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KAIVVADEAY---- 187
Query: 227 FGSIPYTPM----GLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
              I + P     G       +  L ++SK + + G R G+ + N+
Sbjct: 188 ---IEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE 230

>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 97  LSRDLPYKLSADDVYVTLG--CKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE 154
           L++ +   L   D+ + LG    + +E+ +S+  +    +L+  P +  YE  A++  V 
Sbjct: 66  LNKSIENYLKLKDIGIVLGNGASEIIELSISLFEK----ILIIVPSYAEYEINAKKHGVS 121
Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           V  F  L E N  +D + + +  D +  +++I NP NP G +        + ++A + + 
Sbjct: 122 VV-FSYLDE-NMCIDYEDIISKID-DVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKK 178
Query: 215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
            ++ DE +   T G    + +G   +   +  + +++K + +PG RFG+ +TN+ 
Sbjct: 179 TIIIDEAFIEFT-GDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNK 232

>pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYK-LSADDVYVTLGCKQAVEVILSVLARPGANVLLPR 138
           Y+T  G P  ++ I   L R      L  D++  T+G +QA+++I  +     +  +L  
Sbjct: 81  YSTTEGDPVLKQQILKLLERXYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 140
Query: 139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE---ALADKNTAA------MVIINP 189
           P    Y G     +  + +F ++P  +   DL+ +E   +  DKN          V+ N 
Sbjct: 141 PA---YLGAINAFRQYLANFVVVPLEDDGXDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 197
Query: 190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS 249
            NP G   +    + + E+A K  + +V D+ YG L +      P+   G    V+ L +
Sbjct: 198 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257
Query: 250 ISKRWLVPGWRFG 262
            SK  L PG R G
Sbjct: 258 FSK-VLAPGLRIG 269

>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 84/235 (35%), Gaps = 22/235 (9%)
Query: 44  VVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLP 102
           V+ LG GD T   P   T              G ++ Y    G  P R AIA      L 
Sbjct: 58  VISLGIGDTTEPIPEVITSAMAKKAHELSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGL- 115
Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVE---- 154
             +  DDV+V+ G K  +   L V+      + +  P +P Y      + Q  Q      
Sbjct: 116 -GIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 173
Query: 155 ----VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
               + +    PE  +  DL  V       T  +   +P NP G   T   L ++ E A+
Sbjct: 174 KYGNIEYMRCTPENGFFPDLSTV-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAK 228
Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           K   ++V D  Y        P +   + G+    +   S SK     G R GW V
Sbjct: 229 KNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTV 283

>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 91  RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR 150
            +I ++L R   +K+ ++ +  + G   A+ ++++ L +    +++  P +  +  + + 
Sbjct: 74  ESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKN 133
Query: 151 KQVE--VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
              E  +     L   N+ +D + +E    K+    ++ NP NP G V+T   L+++ ++
Sbjct: 134 NNRELIISPLQKLENGNYIMDYEDIENKI-KDVKLFILCNPHNPVGRVWTKDELKKLGDI 192
Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMG 236
             K  V +++DE++  +      + PM 
Sbjct: 193 CLKHNVKIISDEIHSDIILKKHKHIPMA 220

>pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y  + G+P  R+ +++   R     + A +++++ G K  +  +LS    P   V +  P
Sbjct: 71  YGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLLSFFG-PNQTVAIQDP 126
Query: 140 GWPYYEGIAQRKQV-EVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198
            +P Y  IA+     E+     L E  +  +        D +   + + +P NP G V  
Sbjct: 127 SYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE-----DTHIDILCLCSPNNPTGTVLN 181
Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWL 255
              L+ I   A +  ++++ D  Y   TF S P  P  +F    +    I + S SK   
Sbjct: 182 KDQLRAIVHYAIEHEILILFDAAYS--TFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239
Query: 256 VPGWRFGWLV 265
             G R GW V
Sbjct: 240 FAGIRLGWTV 249

>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP----- 162
           D + +T G + A+ + ++     G  V + +P +      A RK VE    + +P     
Sbjct: 103 DGLIITPGTQGALFLAVAATVARGDKVAIVQPDY-----FANRKLVEFFEGEXVPVQLDY 157
Query: 163 ----ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
               E    +DL  +E          +  NP NP G V++   + +IA +A +    V+A
Sbjct: 158 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217
Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFG 262
           D++Y  L +    YT +    ++    V+T+   S    + G+R G
Sbjct: 218 DQLYSRLRYAGASYTHLRAEAAVDAENVVTIXGPSXTESLSGYRLG 263

>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 84/235 (35%), Gaps = 22/235 (9%)
Query: 44  VVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLP 102
           V+ LG GD T   P   T              G ++ Y    G  P R AIA      L 
Sbjct: 58  VISLGIGDTTEPIPEVITSAMAKKAHELSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGL- 115
Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVE---- 154
             +  DDV+V+ G K  +   L V+      + +  P +P Y      + Q  Q      
Sbjct: 116 -GIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 173
Query: 155 ----VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
               + +    PE  +  DL  V       T  +   +P NP G   T   L ++ E A+
Sbjct: 174 KYGNIEYMRCTPENGFFPDLSTV-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAK 228
Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           K   ++V D  Y        P +   + G+    +   S S+     G R GW V
Sbjct: 229 KNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSQYAGFTGVRLGWTV 283

>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 83/235 (35%), Gaps = 22/235 (9%)
Query: 44  VVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLP 102
           V+ LG GD T   P   T              G ++ Y    G  P R AIA      L 
Sbjct: 58  VISLGIGDTTEPIPEVITSAMAKKAHELSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGL- 115
Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVE---- 154
             +  DDV+V+ G K  +   L V+      + +  P +P Y      + Q  Q      
Sbjct: 116 -GIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 173
Query: 155 ----VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
               + +    PE  +  DL  V       T  +   +P NP G   T   L ++ E A+
Sbjct: 174 KYGNIEYMRCTPENGFFPDLSTV-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAK 228
Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           K   ++V D  Y        P +   + G+    +   S S      G R GW V
Sbjct: 229 KNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTV 283

>pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 8/192 (4%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPR 138
           Y    G    ++AI D+  R     L  +D V +  G K  +  + + +  PG  VLLP 
Sbjct: 81  YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD 140
Query: 139 PGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN 195
           PG+  Y     +A  K V +     L   ++  D   V++     T  + +  P NP G+
Sbjct: 141 PGYTDYLAGVLLADGKPVPLN----LEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGS 196
Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL 255
             T     E     +     +V D  YG   F +   + +         I + S+SK + 
Sbjct: 197 TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYN 256
Query: 256 VPGWRFGWLVTN 267
             G+R G+ V N
Sbjct: 257 XSGFRVGFAVGN 268

>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 85/235 (36%), Gaps = 22/235 (9%)
Query: 44  VVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADYLSRDLP 102
           V+ LG GD T   P   T              G ++ Y    G  P R AIA      L 
Sbjct: 58  VISLGIGDTTEPIPEVITSAXAKKAHELSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGL- 115
Query: 103 YKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY------EGIAQRKQVEVR 156
             +  DDV+V+ G K  +   L V       + +  P +P Y       G   +   +V+
Sbjct: 116 -GIGDDDVFVSDGAKCDISR-LQVXFGSNVTIAVQDPSYPAYVDSSVIXGQTGQFNTDVQ 173
Query: 157 HFDLL------PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
            +  +      PE  +  DL  V       T  +   +P NP G   T   L ++ E A+
Sbjct: 174 KYGNIEYXRCTPENGFFPDLSTV-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAK 228
Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           K   ++V D  Y        P +   + G+        S SK     G R GW V
Sbjct: 229 KNGSIIVYDSAYAXYXSDDNPRSIFEIPGAEEVAXETASFSKYAGFTGVRLGWTV 283

>pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLXKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTF--GSIP-YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F  G +P +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNSGRVPTFLSMDVDGRVIRADSFSKI----ISSGLRIGFLTGPKP 279

>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 8/187 (4%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y    G+P  R+ IA          L    V +T G      +  + L   G  V +  P
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWE-VDLDAVEALADKNTAAMVIINPGNPCGNVFT 198
           G+P Y  I +   +        PE   + V  D     A  + A + + +P NP G    
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPAD----FAGLDLAGLXVASPANPTGTXLD 179
Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258
           +     + E A+      ++DE+Y  + + +   T + L         + S SK +   G
Sbjct: 180 HAAXGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE---CYVINSFSKYFSXTG 236
Query: 259 WRFGWLV 265
           WR GW V
Sbjct: 237 WRVGWXV 243

>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 5/198 (2%)
Query: 91  RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR 150
           +A A++ +    Y+   + ++      + + + +       + V++P P +P +  +   
Sbjct: 65  QATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSA 124
Query: 151 KQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR 210
            Q E     +  +    ++L  VE        ++++ NP NP G VF    L E+ ++A 
Sbjct: 125 TQRE----GIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGXVFAPEWLNELCDLAH 180
Query: 211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-ITLGSISKRWLVPGWRFGWLVTNDP 269
           +    V+ DE++  L F        G+  +   V IT+ + S  W + G +   ++ ++P
Sbjct: 181 RYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSXAWNIAGLKCAQIIFSNP 240
Query: 270 NGIFQKSGIIDSIKDCLS 287
           +       +   IKD  S
Sbjct: 241 SDAEHWQQLSPVIKDGAS 258

>pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTF--GSIP-YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F  G +P +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNSGRVPTFLSMDVDGRVIRADSFSKI----ISSGLRIGFLTGPKP 279

>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R  +A Y+++     ++ D+++   G  + ++ +L     PG   L  +P +  +  +A+
Sbjct: 75  RDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK 134
Query: 150 RKQVEVRHFDLLPERNWEVDLD-AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
               E     +    ++ +D+D A+E +  K    + +  P NP G+V +   ++ I  +
Sbjct: 135 GTHTEF--IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINV 192
Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
           A  +   V+ DE Y    F   P     L      ++   ++SK +   G R G+ V N
Sbjct: 193 APGI---VIVDEAYAE--FSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246

>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R  +A Y+++     ++ D+++   G  + ++ +L     PG   L  +P +  +  +A+
Sbjct: 72  RDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK 131
Query: 150 RKQVEVRHFDLLPERNWEVDLD-AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
               E     +    ++ +D+D A+E +  K    + +  P NP G+V +   ++ I  +
Sbjct: 132 GTHTEF--IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINV 189
Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
           A  +   V+ DE Y    F   P     L      ++   ++SK +   G R G+ V N
Sbjct: 190 APGI---VIVDEAYAE--FSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 243

>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-----VLLP-RPGWPYY--EGIAQRKQ 152
           L + +   ++ +T G + A   + ++ A   A+     VL P  P +  Y   G+     
Sbjct: 92  LGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151
Query: 153 VEVR-HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211
           V  R + +LLPE  ++  +D       + T  + +  P NP GNV T   L ++  +A +
Sbjct: 152 VSARPNIELLPEGQFKYHVDFEHLHIGEETGXICVSRPTNPTGNVITDEELXKLDRLANQ 211
Query: 212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVT 266
             + +V D  YG      +P+ P  +F    P     +I   S+SK  L PG R G ++ 
Sbjct: 212 HNIPLVIDNAYG------VPF-PGIIFSEARPLWNPNIILCXSLSKLGL-PGSRCGIIIA 263
Query: 267 NDP--NGIFQKSGII 279
           ND     I   +GII
Sbjct: 264 NDKTITAIANXNGII 278

>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 92  AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK 151
           AIA + S      + +  V         V  ++   +  G  V++  P +  +    +  
Sbjct: 72  AIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN 131
Query: 152 QVEVRHFDLLPERN-WEVDLDAVEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
           Q  V    L  + + W  D+  +EA LA      M++ +P NP G V+T   L+ +A++ 
Sbjct: 132 QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLC 191
Query: 210 RKLRVMVVADEVYGHLTFGSIPYTP 234
            +  V V++DE++  + +G  P+ P
Sbjct: 192 ERHGVRVISDEIHMDMVWGEQPHIP 216

>pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTFGSI---PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F       +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRIGFLTGPKP 279

>pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTFGSI---PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F       +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRIGFLTGPKP 279

>pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50 A Resolution Length = 444

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 116/292 (39%), Gaps = 49/292 (16%)
Query: 18  KAAPAVTVKTSLASIIDSVN---KNDPRPVVPLGYGDPTAFPCFRTXXXXXXXXXXXXR- 73
           K     T  T ++ + D +    K+D +PV  LG G+P                      
Sbjct: 6   KFGQKFTQPTGISQLXDDLGDALKSD-QPVNXLGGGNPAKIDAVNELFLETYKALGNDND 64
Query: 74  SGKFNCYA----TNSGIPPARRAIAD----YLSRDLPYKLSADDVYVTLGCKQAVEVILS 125
           +GK N  A     N   P    A  D    + +R   + L+++++ +T G + A   + +
Sbjct: 65  TGKANSSAIISXANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFN 124
Query: 126 VLARPGAN--------------VLLPRPGWPYYEGIAQRKQVEVRHFD-LLPERN----- 165
           +      N              +LLP    P Y G +    VE +HF  +LP  +     
Sbjct: 125 LFGGAFVNEHSQDKESKSVDKSILLPLT--PEYIGYSDV-HVEGQHFAAVLPHIDEVTHD 181
Query: 166 -------WEVDLDAVE---ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM 215
                  + VD +A+E   AL +    A+    P NP GNV T      +AE+A++  + 
Sbjct: 182 GEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEXAHLAEIAKRYDIP 241
Query: 216 VVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
           ++ D  YG   F +I Y+   L      ++   S+SK  L PG R G +V +
Sbjct: 242 LIIDNAYG-XPFPNIIYSDAHLNWDNNTILCF-SLSKIGL-PGXRTGIIVAD 290

>pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTFGSI---PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F       +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRIGFLTGPKP 279

>pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 112 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 168
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 169 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 227
Query: 215 MVVADEVYGHLTFGSI---PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F       +  M + G ++   +   I    +  G R G+L    P
Sbjct: 228 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSXI----ISSGLRIGFLTGPKP 281

>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 77  FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN--V 134
            N Y  ++     R A   +  R    +L  +++  TLG ++ +    S +     N  +
Sbjct: 52  LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTI 111
Query: 135 LLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPC 193
             P P +  YEG A+  + +     L  E ++   L+  E         +VI+N P NP 
Sbjct: 112 AYPNPFYQIYEGAAKFIKAKSLLXPLTKENDFTPSLNEKEL----QEVDLVILNSPNNPT 167
Query: 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM---GLFG--SIVPVITLG 248
           G   +   L    ++A K   +++ DE Y  +   + P + +    L G  +   V+ + 
Sbjct: 168 GRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACXLAGNEAFKNVLVIH 227
Query: 249 SISKRWLVPGWRFGWLV 265
           S+SKR   PG R G++ 
Sbjct: 228 SLSKRSSAPGLRSGFIA 244

>pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQ--------VEVRHFDL 160
           D+ VT G +Q +  +  ++  PG NVLL  P    Y G  Q           V      +
Sbjct: 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPA---YSGTLQSLHPLGCNIINVASDESGI 166
Query: 161 LPER------NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           +P+        W+ + DA     +       + N  NP GN  T    +EI E+ARK   
Sbjct: 167 VPDSLRDILSRWKPE-DAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225
Query: 215 MVVADEVYGHLTFGSI---PYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +++ D+ Y  L F       +  M + G ++   +   I    +  G R G+L    P
Sbjct: 226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSXI----ISSGLRIGFLTGPKP 279

>pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 109 DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWE 167
           +V +  G  + +  +    ARPGA V  P PG+  Y   AQ   +E   F  +P R ++ 
Sbjct: 87  EVLLGNGSDEIISXLALAAARPGAKVXAPVPGFVXYAXSAQFAGLE---FVGVPLRADFT 143
Query: 168 VDLDA-VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGH 224
           +D  A + A A+   A + +  P NP GN+F     + I   A+    R +VV DE Y  
Sbjct: 144 LDRGAXLAAXAEHQPAIVYLAYPNNPTGNLFDAADXEAIVRAAQGSVCRSLVVVDEAYQP 203
Query: 225 LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274
               S   + +  FG++   +   ++SK  L  G R G+ V  DP  + Q
Sbjct: 204 FAQESW-XSRLTDFGNL---LVXRTVSKLGLA-GIRLGY-VAGDPQWLEQ 247

>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198
           PG+  Y     +   E+R + L     W++    +EAL   +   + +  P NP G +  
Sbjct: 106 PGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-PDLDCLFLCTPNNPTGLLPE 164
Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258
              LQ IA+  + L + ++ DE +         + P         +  L S++K + +PG
Sbjct: 165 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA--LKDNPHIWVLRSLTKFYAIPG 222
Query: 259 WRFGWLVTND 268
            R G+LV +D
Sbjct: 223 LRLGYLVNSD 232

>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R  +A Y+++     ++ D+++   G  + ++ +L     PG   L  +P +  +  +A+
Sbjct: 75  RDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK 134
Query: 150 RKQVEVRHFDLLPERNWEVDLD-AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
               E     +    ++ +D+D A+E +  K    + +  P NP G+V +   ++ I  +
Sbjct: 135 GTHTEF--IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINV 192
Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
           A  +   V+ DE Y    F   P     L      ++   ++S  +   G R G+ V N
Sbjct: 193 APGI---VIVDEAYAE--FSPSPSATTLLEKYPTKLVVSRTMSXAFDFAGGRLGYFVAN 246

>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 22/249 (8%)
Query: 33  IDSVNKNDPRPVVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARR 91
           ++ + K+    ++ LG GD T   P   T              G +  Y    G    R+
Sbjct: 61  LEHIEKHPNVQLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEG-YRGYGLEQGNKTLRK 119
Query: 92  AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----I 147
           AIA+   RDL  K  +++V+V+ G +  +   L +L      + +  P +P Y      I
Sbjct: 120 AIAETFYRDLHVK--SNEVFVSDGAQSDISR-LQLLLGSNVTIAVQDPTFPAYIDSSVII 176
Query: 148 AQ--------RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
            Q        +K   V +    P  ++  DL    A+  + T  +   +P NP G V + 
Sbjct: 177 GQTGHFHEKTKKYQNVVYMPCGPNNSFFPDL----AMTPR-TDVIFFCSPNNPTGYVASR 231
Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
             L ++ + A+    +++ D  Y        P +   + G+    I + S SK     G 
Sbjct: 232 KQLHQLVDFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVAIEVSSFSKFAGFTGV 291
Query: 260 RFGWLVTND 268
           R GW +  D
Sbjct: 292 RLGWSIIPD 300

>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant Staphylococcus Aureus Sar2028, An Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate Dependent Aminotransferase Length = 430

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 21/204 (10%)
Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDV---YVTLGCKQAVEVILSVLARPGANVLL 136
           YA   GI   R      + RD P +LS D++    VT      + ++  +       +LL
Sbjct: 84  YAPPQGIEELRDLWQQKMLRDNP-ELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILL 142
Query: 137 PRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALA--DKNTAAMVIINPGNPC 193
           P   W  Y+ +   R    ++ + +  +         VEAL   +K+   M++  P NP 
Sbjct: 143 PEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPT 202
Query: 194 GNVFTYHHLQEIAEMARKL-----RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV---- 244
           G   T+  +  I E  + L     +V+ V D+ Y  L +  + YT   LF ++  +    
Sbjct: 203 GYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV-YT-QSLFTALTNLHSNA 260
Query: 245 ---ITLGSISKRWLVPGWRFGWLV 265
              I L   +K +   G+R G++ 
Sbjct: 261 ILPIRLDGATKEFFAWGFRVGFMT 284

>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 23/241 (9%)
Query: 38  KNDPRPVVPLGYGDPTA-FPCFRTXXXXXXXXXXXXRSGKFNCYATNSGIPPARRAIADY 96
           KN    ++ LG GD T   P +              R G ++ Y    G    R A+A  
Sbjct: 65  KNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREG-YSGYGAEQGQGALREAVAST 123
Query: 97  LSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEV 155
                    +AD+++++ G K  +  I  +  ++P   V +  P +P Y   +    +  
Sbjct: 124 FYGHA--GRAADEIFISDGSKCDIARIQMMFGSKP--TVAVQDPSYPVYVDTSVMMGMTG 179
Query: 156 RH----FDLL------PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
            H    FD +      P+ ++  DL        K T  +   +P NP G   T   L E+
Sbjct: 180 DHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTEL 234
Query: 206 AEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL 264
              ARK   ++V D  Y  +++    P T   + G+    I   S SK     G R GW 
Sbjct: 235 VNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWT 294
Query: 265 V 265
           V
Sbjct: 295 V 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	1e-114
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	1e-106
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	5e-48
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	2e-45
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	7e-45
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	2e-42
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	4e-42
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	5e-41
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	1e-40
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	3e-40
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	4e-40
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	5e-40
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	4e-39
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	6e-39
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	4e-37
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	4e-37
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	5e-37
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	8e-37
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	1e-36
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	1e-36
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	2e-36
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	1e-35
3ele_A	398	Amino transferase; RER070207001803, structural gen	9e-35
3nra_A	407	Aspartate aminotransferase; structural genomics, j	2e-34
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	4e-34
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	6e-34
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	3e-33
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	4e-33
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	4e-33
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	7e-33
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	2e-32
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	3e-32
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	5e-31
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	1e-30
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	1e-29
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	7e-29
1vp4_A	425	Aminotransferase, putative; structural genomics, j	2e-27
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	2e-27
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	6e-27
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	9e-27
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	9e-27
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	1e-26
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	2e-25
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	1e-23
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	8e-21
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	2e-20
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	3e-20
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	3e-20
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	4e-20
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	7e-20
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	8e-20
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	1e-19
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	2e-19
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	2e-19
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	3e-19
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	3e-19
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	4e-19
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	5e-19
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	4e-16
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	1e-15
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	4e-15
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	4e-15
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	9e-15
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	2e-13
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	9e-13
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	9e-11
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	1e-10
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	2e-09
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	9e-06
3rq1_A	418	Aminotransferase class I and II; structural genomi	2e-05
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	5e-05
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	6e-05
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	3e-04
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	4e-04

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  336 bits (864), Expect = e-114
 Identities = 104/260 (40%), Positives = 156/260 (60%), Gaps = 2/260 (0%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
            N  + ++ L  GDPT F    T  E   A+ DA+ SGK+N YA + G   +R  IA Y 
Sbjct: 50  PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYY 109

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
                  L A DV +T GC QA+++ L+VLA PG N+L+PRPG+  Y+ +A+   +EV+ 
Sbjct: 110 HCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKL 168

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           ++LLPE++WE+DL  +E L D+ TA +++ NP NPCG+VF+  HLQ+I  +A +  V ++
Sbjct: 169 YNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPIL 228

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277
           ADE+YG + F    Y P+    + VP+++ G ++KRWLVPGWR GW++ +D   IF    
Sbjct: 229 ADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE- 287

Query: 278 IIDSIKDCLSIYSDIPTFIQ 297
           I D +           T +Q
Sbjct: 288 IRDGLVKLSQRILGPCTIVQ 307

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  315 bits (809), Expect = e-106
 Identities = 77/270 (28%), Positives = 137/270 (50%), Gaps = 12/270 (4%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
              P+P++ L  GDPT      T+      + +A+ S + N Y    G P AR A+A + 
Sbjct: 29  SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWW 88

Query: 98  SR------DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK 151
                   +L   +  D+V +  G    + + ++ +   G   L+P+PG+P+YE + +  
Sbjct: 89  RNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY 148

Query: 152 QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211
            + +  ++  PE +WE DLD +  L D  T  +++ NP NPCG+ F+  H+++I  +A +
Sbjct: 149 GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEE 208

Query: 212 LRVMVVADEVYGHLTFG----SIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
           LR+ + +DE+Y  + F     +  +T +  F + VP + LG  +K  +VPGWR GWL+  
Sbjct: 209 LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYV 268

Query: 268 DPNGIFQKSGIIDSIKDCLSIYSDIPTFIQ 297
           DP+G       ++ +K    +     T +Q
Sbjct: 269 DPHGNGPS--FLEGLKRVGMLVCGPCTVVQ 296

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  164 bits (417), Expect = 5e-48
 Identities = 72/260 (27%), Positives = 123/260 (47%), Gaps = 5/260 (1%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           +     V+ L  GDP  F  F+     ++A   A++ G  N Y  + G+P  R+AI +  
Sbjct: 34  EKKGIKVIRLNIGDPVKFD-FQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVERE 91

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            R     ++ DDV VT    +A+++I   L  PG  +L+P P +P Y G+ +    +   
Sbjct: 92  KRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVE 151

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           +  + E +W+ D+D +       T A+ +INP NP G ++    L+EI  +A +  + V+
Sbjct: 152 YRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVI 211

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277
           +DE+Y  +T+    +   G     VPVI +  +SK +   GWR G++   DP        
Sbjct: 212 SDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLS--E 268

Query: 278 IIDSIKDCLSIYSDIPTFIQ 297
           + ++I     I     T  Q
Sbjct: 269 VREAIDRLARIRLCPNTPAQ 288

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  156 bits (397), Expect = 2e-45
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 15/226 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
           +  L   +      F  +    +     ++  K N Y    G P  +++++   +     
Sbjct: 29  ISSLTLEEL-----FALSGTNPEDFYKKLQGTKLN-YGWIEGSPAFKKSVSQLYTG---- 78

Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
            +  + +  T G   A  ++L  L  PG +V+   P +     I +    EV  + +  E
Sbjct: 79  -VKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
             W  DL+ +  L    T  + I N  NP G V    +L+E+ E+A ++   +++DEVY 
Sbjct: 138 NGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYR 197

Query: 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
             +   +P     ++      I + S+SK + +PG R GW+  N  
Sbjct: 198 SFSELDVPSII-EVYDK---GIAVNSLSKTYSLPGIRIGWVAANHQ 239

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score =  156 bits (397), Expect = 7e-45
 Identities = 50/239 (20%), Positives = 82/239 (34%), Gaps = 16/239 (6%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
                +  G P   P  +  +E E   +  +R G  + Y    G+P  ++  + +    +
Sbjct: 44  TKFCRMEMGVPG-LPAPQIGIETE---IQKLREGVASIYPNLDGLPELKQEASRFAKLFV 99

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLAR----PGANVLLPRPGWPYYEGIAQRKQVEVRH 157
              + A     T+G  Q   V   V  R         L   PG+   +   +    +   
Sbjct: 100 NIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFES 159

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           FDL   R  ++       L      +++  NP NP     T   L+ I E+A K  V+V+
Sbjct: 160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVI 219

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVP-------VITLGSISKRWLVPGWRFGWLVTNDP 269
            D  Y  + F    Y+  G               I   S SK +   G R G L+ +  
Sbjct: 220 EDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGK 277

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score =  149 bits (378), Expect = 2e-42
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 11/224 (4%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           R ++ +  G P           A +A+  ++ +     Y    G+P  R+ IA       
Sbjct: 31  RRIIHMEVGQPG----TGAPRGAVEALAKSLETDALG-YTVALGLPALRQRIARLYGEWY 85

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL 161
              L    V +T G      +  + L   G  V +  PG+P Y  I +   +        
Sbjct: 86  GVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTA 145

Query: 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221
           PE   +         A  + A +++ +P NP G +  +  +  + E A+      ++DE+
Sbjct: 146 PENRLQPV---PADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEI 202

Query: 222 YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           Y  + + +   T + L         + S SK + + GWR GW+V
Sbjct: 203 YHGIEYEAKAVTALELTDE---CYVINSFSKYFSMTGWRVGWMV 243

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score =  149 bits (379), Expect = 4e-42
 Identities = 64/257 (24%), Positives = 100/257 (38%), Gaps = 23/257 (8%)

Query: 24  TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN 83
           ++    A+   + +KN  R ++ LG G    F  +     A      A+     N Y+  
Sbjct: 39  SLTNEAAAKAANNSKNQGRELINLGQG----FFSYSPPQFAIKEAQKALDIPMVNQYSPT 94

Query: 84  SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY 143
            G P    ++    S     +L A++V VT G  + +   L  L   G  V++  P +  
Sbjct: 95  RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQ 154

Query: 144 YEGIAQR---KQVEVR-------HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC 193
           Y    +    K V V                 W +D +  E      T A++I  P NP 
Sbjct: 155 YIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPI 214

Query: 194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLG 248
           G VFT   L  +  +  K  V++++DEVY HL F         L     P      +T+G
Sbjct: 215 GKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLS----PEIGQLTLTVG 270

Query: 249 SISKRWLVPGWRFGWLV 265
           S  K +   GWR GW++
Sbjct: 271 SAGKSFAATGWRIGWVL 287

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  147 bits (373), Expect = 5e-41
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 22/265 (8%)

Query: 51  DPTAFPCFRT-AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD 109
                  F   ++     I+  +       Y+ + GI   R AIA  ++    +  +ADD
Sbjct: 100 REEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADD 159

Query: 110 VYVTLGCKQAVEVILSVLAR-PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV 168
           +++T G    V +++ +L R     +L+P P +P Y          +  + L     W +
Sbjct: 160 IFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGL 219

Query: 169 DLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
           +   V+   +       N  A+V+INPGNP G V    +  +I +  +   ++++ADEVY
Sbjct: 220 ETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVY 279

Query: 223 GHLTFG------SIP--YTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTNDPNGIF 273
               +       S       +G     +P+++  S+SK +    G R G+          
Sbjct: 280 QENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGF---- 335

Query: 274 QKSGIIDSIKDCLSIYSDIPTFIQV 298
             + + + I    S+        Q+
Sbjct: 336 -SAPVREQIYKIASVNLCSNITGQI 359

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  146 bits (370), Expect = 1e-40
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 22/252 (8%)

Query: 56  PCFRT-AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLS-RDLPYKLSADDVYVT 113
           P F   A +    I+ A        Y+ + G+   R  +A Y++ RD       D++Y+T
Sbjct: 100 PSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLT 159

Query: 114 LGCKQAVEVILSVLARPG----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVD 169
            G    +  IL +L   G      V++P P +P Y  +         ++ L  E  W ++
Sbjct: 160 TGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALN 219

Query: 170 LDAVEALADKNTA-----AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH 224
           ++ +     +         + IINPGNP G V +   ++++   A + ++ ++ADEVY  
Sbjct: 220 VNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQD 279

Query: 225 LTFG---------SIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWL-VTNDPNGIF 273
             +           + Y     + S V + +  S SK ++   G+R G++ V N    I 
Sbjct: 280 NVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIK 339

Query: 274 QKSGIIDSIKDC 285
            +   + S++ C
Sbjct: 340 GQLVKLLSVRLC 351

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score =  143 bits (362), Expect = 3e-40
 Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           ++LA    ++N         L  G    FP F      ++ +   V  G  N YA  +G+
Sbjct: 24  SALAQQHQAIN---------LSQG----FPDFDGPRYLQERLAHHVAQG-ANQYAPMTGV 69

Query: 87  PPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
              R AIA    R   Y+  AD D+ VT G  +A+   ++ L R G  V+   P +  Y 
Sbjct: 70  QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYA 129

Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
                    V+   L P  ++ VD     AL  + T  +++  P NP   V+       +
Sbjct: 130 PAIALSGGIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAAL 188

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWR 260
            +      + V++DEVY H+ F    +  +       P      + + S  K + + GW+
Sbjct: 189 WQAIAGHEIFVISDEVYEHINFSQQGHASVLAH----PQLRERAVAVSSFGKTYHMTGWK 244

Query: 261 FGWLV 265
            G+ V
Sbjct: 245 VGYCV 249

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score =  143 bits (363), Expect = 4e-40
 Identities = 74/246 (30%), Positives = 108/246 (43%), Gaps = 25/246 (10%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           ++LA+ I +VN         LG G    FP      +   A  DA+  G  N Y    G 
Sbjct: 19  SALATRIGAVN---------LGQG----FPDEDGPPKMLQAAQDAIAGG-VNQYPPGPGS 64

Query: 87  PPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
            P RRAIA    R        + +V VT+G  +A+   +  L  PG+ VLL  P +  Y 
Sbjct: 65  APLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYS 124

Query: 146 GIAQRKQVEVRHFDLLPE-RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE 204
            +            L+P+ R + +D DA+       T A++I +P NP G V +   L  
Sbjct: 125 PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAA 184

Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGW 259
           IAE+A    ++V+ DEVY HL F    + P+  F           IT+ S +K +   GW
Sbjct: 185 IAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF----DGMAERTITISSAAKMFNCTGW 240

Query: 260 RFGWLV 265
           + GW  
Sbjct: 241 KIGWAC 246

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score =  143 bits (363), Expect = 5e-40
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 15/251 (5%)

Query: 31  SIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87
            +++ +N     P  + LG G                 D +     +     Y    G  
Sbjct: 19  RLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKT 78

Query: 88  PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN---VLLPRPGWPYY 144
               A+A  L   L + +   ++ +T G + A   + ++ A   A+     +  P  P Y
Sbjct: 79  ALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEY 138

Query: 145 EGIAQRKQVEVR------HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT 198
            G A     +        + +LLPE  ++  +D       + T  + +  P NP GNV T
Sbjct: 139 IGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVIT 198

Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258
              L ++  +A +  + +V D  YG    G I ++      +   +I   S+SK   +PG
Sbjct: 199 DEELMKLDRLANQHNIPLVIDNAYGVPFPG-IIFSEARPLWN-PNIILCMSLSK-LGLPG 255

Query: 259 WRFGWLVTNDP 269
            R G ++ ND 
Sbjct: 256 SRCGIIIANDK 266

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score =  140 bits (356), Expect = 4e-39
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           K     +  L  G P      +T     + I +     +   Y+ ++GI   R A A Y 
Sbjct: 39  KKRGVRIHHLNIGQPD----LKTPEVFFERIYENKP--EVVYYSHSAGIWELREAFASYY 92

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            R     +  ++V VT G  +A+    +V+A PG  +L+  P +  Y   A+   V++  
Sbjct: 93  KRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIP 152

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
                E  + +    +E+  ++ T  +V+ NP NP G V+    ++ + E+A +  + ++
Sbjct: 153 VTRRMEEGFAIP-QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLI 211

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGWLVT 266
            DEVY  + F     + +    SI    V+ + S+SK++   G R G L+T
Sbjct: 212 VDEVYSEIVFRGEFASAL----SIESDKVVVIDSVSKKFSACGARVGCLIT 258

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score =  139 bits (353), Expect = 6e-39
 Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 28/242 (11%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           + LA  + +VN         LG G    FP         +A+  A+     + YA  +G+
Sbjct: 19  SGLAQRLGAVN---------LGQG----FPSNPPPPFLLEAVRRALGRQ--DQYAPPAGL 63

Query: 87  PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG 146
           P  R A+A+  + +       + V VT G  +A+ V+L  L  PG  V++  P +  Y  
Sbjct: 64  PALREALAEEFAVE------PESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP 117

Query: 147 IAQRKQVEVRHFDL-LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
            A     + R   L L    + +DL A+E      T A+++  P NP G VF    L+ I
Sbjct: 118 DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAI 177

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGW 263
           A +AR   + +++DEVY  L +G  P           P    T+GS  KR    G+R GW
Sbjct: 178 ARLARAHDLFLISDEVYDELYYGERPRRLR----EFAPERTFTVGSAGKRLEATGYRVGW 233

Query: 264 LV 265
           +V
Sbjct: 234 IV 235

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score =  135 bits (343), Expect = 4e-37
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 44  VVPLGYGDPTA---FPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLS 98
           V+ +G  +                + +I             +    G+P  R+AIA ++ 
Sbjct: 38  VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFME 97

Query: 99  R--DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEGIAQRKQVEV 155
           +      +   + V +  G   A E I+  LA PG   L+P P +P +   +  R  V++
Sbjct: 98  KTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQL 157

Query: 156 RHFDLLPERNWEVDLDAVEA------LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
                    N+++   AV+        ++     +++ NP NP G       L+ +    
Sbjct: 158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFT 217

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----------VITLGSISKRWLVPG 258
            +  + +V DE+Y    F +  +        I+            V  + S+SK   +PG
Sbjct: 218 NQHNIHLVCDEIYAATVFDTPQFVS---IAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274

Query: 259 WRFGWLVTNDPN 270
           +R G + + + +
Sbjct: 275 FRVGIIYSFNDD 286

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  135 bits (343), Expect = 4e-37
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 31/260 (11%)

Query: 39  NDPRPVVPLGYGDPTA---FPCFRTAVEAEDAIVDAVRSGKFN---CYATNSGIPPARRA 92
           ++   ++ +G  +            A   E A         F     +    G+P  ++A
Sbjct: 35  HNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKA 94

Query: 93  IADYLS--RDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEGIAQ 149
           + D+++  R        + + +T G   A E  +  LA PG  VL+P P +P +   +  
Sbjct: 95  MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEA------LADKNTAAMVIINPGNPCGNVFTYHHLQ 203
           R  VE+          +++   A+E         +     +++ NP NP G   T + L 
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214

Query: 204 EIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-------------VITLGSI 250
            +        + +++DE+Y    F S  +  +     ++              V  + S+
Sbjct: 215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISV---MEVLKDRNCDENSEVWQRVHVVYSL 271

Query: 251 SKRWLVPGWRFGWLVTNDPN 270
           SK   +PG+R G + +ND  
Sbjct: 272 SKDLGLPGFRVGAIYSNDDM 291

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  135 bits (342), Expect = 5e-37
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 31/254 (12%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNS 84
             LA+    +N         LG G    FP +     A +A+  A  S     N Y    
Sbjct: 31  IQLAAQYKPLN---------LGQG----FPDYHAPKYALNALAAAANSPDPLANQYTRGF 77

Query: 85  GIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY 143
           G P   +A++   S+ +   ++   +V VT+G  +A+   +      G  V++  P +  
Sbjct: 78  GHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDC 137

Query: 144 YEGIAQRKQVEVRHFDLLPER--------NWEVDLDAVEALADKNTAAMVIINPGNPCGN 195
           YE + +      R   L P +        +W +D + +EAL ++ T  ++I  P NP G 
Sbjct: 138 YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197

Query: 196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM----GLFGSIVPVITLGSIS 251
           V     L+ +A + +K  V+ V+DEVY H+ F    +  +    G++      IT+GS  
Sbjct: 198 VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER---TITIGSAG 254

Query: 252 KRWLVPGWRFGWLV 265
           K + + GW+ GW  
Sbjct: 255 KTFSLTGWKIGWAY 268

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score =  134 bits (340), Expect = 8e-37
 Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 30/253 (11%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           T LA+    VN         LG G    FP        ++ +  A      N Y    G 
Sbjct: 17  TKLAADPSVVN---------LGQG----FPDISPPSYVKEELSKAAFIDNMNQYTRGFGH 63

Query: 87  PPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
           P   +A++    +    ++  + ++ V +G   ++   +  L  PG  V++  P +  YE
Sbjct: 64  PALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYE 123

Query: 146 GIAQRKQVEVRHFDLLPER---------NWEVDLDAVEALADKNTAAMVIINPGNPCGNV 196
            + +          L  +          +W  D   +E+     T A+++  P NP G V
Sbjct: 124 PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKV 183

Query: 197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM----GLFGSIVPVITLGSISK 252
           +T   LQ IA++  K   + ++DEVY  L +    +  +    G++      IT+GS  K
Sbjct: 184 YTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWER---TITIGSAGK 240

Query: 253 RWLVPGWRFGWLV 265
            + V GW+ GW +
Sbjct: 241 TFSVTGWKLGWSI 253

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score =  134 bits (340), Expect = 1e-36
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 31/268 (11%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
             ++ L  G+P       T     + +    +    + Y+T+ GIP  RRAI+ +     
Sbjct: 37  EDIIDLSMGNPD----GPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDR- 91

Query: 102 PYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHF 158
            Y +  D   +  VT+G K+ +  ++      G  +L+P P +P +   A     +VR  
Sbjct: 92  -YDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSV 150

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
            L+P  ++  +L+     +      M++  P NP          + +  +A++  VMVV 
Sbjct: 151 PLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210

Query: 219 DEVYGHLTFGSIPYTPMGLFGSI--VP-----VITLGSISKRWLVPGWRFGWLVTNDPNG 271
           D  Y  + +    +       SI  VP      +   ++SK + + GWR G++V N    
Sbjct: 211 DLAYADIVYDG--WKAP----SIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN---- 260

Query: 272 IFQKSGIIDSIKDCLS-IYSDIPTFIQV 298
                 ++ ++    S       T +QV
Sbjct: 261 ----PELVSALARIKSYHDYGTFTPLQV 284

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  134 bits (339), Expect = 1e-36
 Identities = 64/255 (25%), Positives = 102/255 (40%), Gaps = 32/255 (12%)

Query: 27  TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSG 85
             LAS  D VN         LG G    FP F     A +A   AV      N Y    G
Sbjct: 22  VKLASEHDVVN---------LGQG----FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFG 68

Query: 86  IPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY 144
            PP  + +A +    L  ++    +V VT+G   A+      L   G  V++  P +  Y
Sbjct: 69  YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCY 128

Query: 145 EGIAQRKQVEVRHFDLLP----------ERNWEVDLDAVEALADKNTAAMVIINPGNPCG 194
           E +            L P            NW++D   +       T A+V+  P NP G
Sbjct: 129 EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLG 188

Query: 195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM----GLFGSIVPVITLGSI 250
            VF+   L+ +A + ++  V+ + DEVY  + +    +  +    G++      +T+GS 
Sbjct: 189 KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWER---TLTIGSA 245

Query: 251 SKRWLVPGWRFGWLV 265
            K +   GW+ GW++
Sbjct: 246 GKTFSATGWKVGWVL 260

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score =  133 bits (336), Expect = 2e-36
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 23/235 (9%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           +++ + V+ L  G+P     F T     D  + +++ G    Y  + GI   R  I++  
Sbjct: 25  ESEGKKVIHLEIGEPD----FNTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELY 79

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVE 154
                  +  D++ +T G    +   LS +   G  VL+  P +P Y+        K V 
Sbjct: 80  KDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVF 139

Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
                       +  ++++E      T A++I +P NP G V      +EI E A +   
Sbjct: 140 C-----------DFTVESLEEALSDKTKAIIINSPSNPLGEVID----REIYEFAYENIP 184

Query: 215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
            +++DE+Y  L +    Y+ +    ++   I +   SK + + GWR G++++ND 
Sbjct: 185 YIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDE 239

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score =  130 bits (330), Expect = 1e-35
 Identities = 49/261 (18%), Positives = 96/261 (36%), Gaps = 20/261 (7%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
             ++ L  G                A+ +A+       Y   S   P     A +     
Sbjct: 25  VGLIDLSIGSTD----LPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGR- 79

Query: 102 PYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHF 158
            Y +  D   +    +G ++ +  +L  L  P   +LLP   +P Y G A+   +     
Sbjct: 80  -YGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLI 138

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
            L  +     DL AV     +    +++  P NP G V  + + +E   +ARK  + ++ 
Sbjct: 139 PLRED--GLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIH 196

Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI 278
           D  Y    +     +P+ L G+   V+ L S+SK + + G+R G+ + ++          
Sbjct: 197 DNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEE--------A 248

Query: 279 IDSIKDCLS-IYSDIPTFIQV 298
           +  ++     I  +    +  
Sbjct: 249 LARLERVKGVIDFNQYAGVLR 269

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score =  128 bits (325), Expect = 9e-35
 Identities = 54/274 (19%), Positives = 116/274 (42%), Gaps = 37/274 (13%)

Query: 44  VVPLGYGDPTAFP---CFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
           V     G+P+  P           ++ + D       + Y +  G    R AIA++L+  
Sbjct: 37  VYDFSIGNPS-IPAPQIVNDT--IKELVTDYDSVA-LHGYTSAQGDVETRAAIAEFLNNT 92

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-VLLPRPGWPYYEGI---AQRKQVEVR 156
                +AD++Y+T+G   ++ +    L     +  +   P +P Y+     A  + VEV 
Sbjct: 93  HGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVP 152

Query: 157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK----- 211
                   ++++D DA+E   + +T  ++I +P NP G V++   +++++++  K     
Sbjct: 153 ----ADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEI 208

Query: 212 -LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLV 265
              + ++ADE Y  + +        G+    V       +   S SK   +PG R G+++
Sbjct: 209 GRPIFIIADEPYREIVYD-------GIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVL 261

Query: 266 TNDPNGIFQKSGIIDSIKDCLSIYSDI--PTFIQ 297
              P+ ++ K+ +  ++         +  P+  Q
Sbjct: 262 V--PDEVYDKAELYAAVCGAGRALGYVCAPSLFQ 293

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score =  128 bits (323), Expect = 2e-34
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 18/233 (7%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD--L 101
            V   +GD        T    +         G    Y    G    R  +A  L+     
Sbjct: 41  PVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGG-VQAYTEYRGDLGIRDLLAPRLAAFTGA 97

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVR-H 157
           P   + D + +T G + A+ + ++     G  V + +P +     +    + + V V+  
Sbjct: 98  PVD-ARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLD 156

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           +    E    +DL  +E          +  NP NP G V++   + +IA +A +    V+
Sbjct: 157 YVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 216

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLV 265
           AD++Y  L +    YT      +        V+T+   SK   + G+R G   
Sbjct: 217 ADQLYSRLRYAGASYTH---LRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 266

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score =  128 bits (323), Expect = 4e-34
 Identities = 57/262 (21%), Positives = 97/262 (37%), Gaps = 39/262 (14%)

Query: 44  VVPLGYGDPTAFPCFRTAV-EAEDAIVDAVRSGKFNC--------YATNSGIPPARRAIA 94
           V  LG G+P           E   A+ +   +GK N         Y+   G      A+ 
Sbjct: 34  VNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALV 93

Query: 95  DYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN---------------VLLPRP 139
            + +R   + L+++++ +T G + A   + ++      N               +L   P
Sbjct: 94  GFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTP 153

Query: 140 GWPYYEGIAQRKQ---------VEVRHFDLLPERNWEVDLDAVEALA---DKNTAAMVII 187
            +  Y  +    Q          EV H        + VD +A+E L    +    A+   
Sbjct: 154 EYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCS 213

Query: 188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL 247
            P NP GNV T   +  +AE+A++  + ++ D  YG      I Y+   L       I  
Sbjct: 214 RPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPN-IIYSDAHLNWD-NNTILC 271

Query: 248 GSISKRWLVPGWRFGWLVTNDP 269
            S+SK   +PG R G +V +  
Sbjct: 272 FSLSK-IGLPGMRTGIIVADAK 292

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score =  126 bits (320), Expect = 6e-34
 Identities = 55/273 (20%), Positives = 102/273 (37%), Gaps = 19/273 (6%)

Query: 30  ASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA 89
              +    ++ P P++ +  G P       T     D    A+   +   Y    G    
Sbjct: 35  GKTMGRKIEHGPLPLINMAVGIPD----GPTPQGIIDHFQKALTIPENQKYGAFHGKEAF 90

Query: 90  RRAIADYLSRDLPYKLSAD---DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG 146
           ++AI D+  R   Y ++ D   +V +  G K  +  + + +  PG  VLLP PG+  Y  
Sbjct: 91  KQAIVDFYQRQ--YNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA 148

Query: 147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIA 206
                  +    +L P  ++  D   V++     T  + +  P NP G+  T     E  
Sbjct: 149 GVLLADGKPVPLNLEPP-HYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAI 207

Query: 207 EMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT 266
              +     +V D  YG   F +   + +         I + S+SK + + G+R G+ V 
Sbjct: 208 AKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267

Query: 267 NDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV 298
           N          +I ++K   +   + +   +Q 
Sbjct: 268 NKD--------MIQALKKYQTHTNAGMFGALQD 292

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score =  124 bits (314), Expect = 3e-33
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
             +V L  G+P     F T    ++A   A+  G    YA  +GIP  R A+A+   R+ 
Sbjct: 31  VDLVALTAGEPD----FDTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRREN 85

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHF 158
              ++ ++  VT+G  QA+  +   +  PG  V++  P W  Y  +   A    VEV   
Sbjct: 86  GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEV--- 142

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
           + LPE  +  D + V       T A+V+ +P NP G V+    L+ +A +A +    +V+
Sbjct: 143 ETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202

Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGWLV 265
           DE+Y HL +    ++P    G + P   +T+   +K + + GWR G+  
Sbjct: 203 DEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score =  124 bits (313), Expect = 4e-33
 Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 19/232 (8%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
             V     G+P     F T     +A   A+  G    Y   +G P  R AIA  L RD 
Sbjct: 30  IDVCSFSAGEPD----FNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDN 84

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHF 158
                AD++ VT G KQ++  ++  +  PG  V++P P W  Y  +   A+   V +   
Sbjct: 85  GLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVIL--- 141

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
               E  ++V  + +       T  +V   P NP G V+T   ++ IA++A +  + V++
Sbjct: 142 PTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLS 201

Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLV 265
           DE+Y  + +    +  +   G+  P      +     +K + + GWR G+L 
Sbjct: 202 DEIYEKILYDDAQHLSI---GAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score =  124 bits (313), Expect = 4e-33
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD--L 101
           V+ LG G+P     F T    ++   +A+  G    Y  N G+   R AIA+ L +   +
Sbjct: 28  VISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGI 82

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVEVRHF 158
                  ++ V LG  QA  + LS   + G  VL+P P +  Y      A  K VEV   
Sbjct: 83  EAD-PKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEV--- 138

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
               E  + +++D ++      T A++I +P NP G V T   L+EIA+   +  ++V++
Sbjct: 139 PTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198

Query: 219 DEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWL 264
           DEVY H  +    +  +     +    IT+   SK + + GWR G++
Sbjct: 199 DEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFV 245

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score =  123 bits (311), Expect = 7e-33
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 18/235 (7%)

Query: 41  PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
            +  + LG G+P     F T    +DA+ +       N Y  ++     R A   +  R 
Sbjct: 22  KKRGLDLGIGEPQ----FETPKFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKRR 75

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHF 158
              +L  +++  TLG ++ +    S +        +  P P +  YEG A+  + +    
Sbjct: 76  FKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLM 135

Query: 159 DLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
            L  E ++   L+      +     +VI+N P NP G   +   L    ++A K   +++
Sbjct: 136 PLTKENDFTPSLNE----KELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILI 191

Query: 218 ADEVYGHLTFGSIPY-----TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
            DE Y  +   + P        +    +   V+ + S+SKR   PG R G++  +
Sbjct: 192 NDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD 246

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score =  122 bits (309), Expect = 2e-32
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 11/235 (4%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
                 V+ L  G+P     F T     +  V  ++ G    Y    GI   R  IA  +
Sbjct: 37  IKKGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRI 91

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI---AQRKQVE 154
                  +S D V VT G KQA+      L  PG  V++  P W  Y      A      
Sbjct: 92  GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNV 151

Query: 155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
           V   +    +N++  L+ VE L    T A++I +P NP G V+    L+ +  +A+K   
Sbjct: 152 V---ETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF 208

Query: 215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
            +++DEVY  L +     + + +      ++ +   SK   + GWR G+L++++ 
Sbjct: 209 YIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK 263

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score =  124 bits (312), Expect = 3e-32
 Identities = 43/248 (17%), Positives = 79/248 (31%), Gaps = 41/248 (16%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA-DYLSRD-- 100
            +               A    + +   +       Y     +      I   Y+ R+  
Sbjct: 106 SLSYVRDQLG----LDPAAFLHEMVDGILGCN----YPVPPRMLNISEKIVRQYIIREMG 157

Query: 101 LPYKLS-ADDVYVTLGCKQAVEVILSVLAR-----PGANVLLPRPGW-PYYEGI----AQ 149
                S + +++   G   A+  I   L        G  V +  P + PY E        
Sbjct: 158 ADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYA 217

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
            ++V +      P  NW+     ++ L D        +NP NP         L+ +  + 
Sbjct: 218 LEEVAIN---ADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIV 274

Query: 210 RKLR--VMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-----ITLGSISKRWLVPGWRFG 262
            + R  +M++ D+VYG              F S+  +     + + S SK +   GWR G
Sbjct: 275 AEHRPDLMILTDDVYGTFADD---------FQSLFAICPENTLLVYSFSKYFGATGWRLG 325

Query: 263 WLVTNDPN 270
            +  +  N
Sbjct: 326 VVAAHQQN 333

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score =  120 bits (303), Expect = 5e-31
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 36/245 (14%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
            V   + +              + +  AV +     Y            I +Y  ++L Y
Sbjct: 105 AVNYCHTELG----LNRDKVVAEWVNGAVANN----YPVPDRCLVNTEKIINYFLQELSY 156

Query: 104 K----LSADDVYVTLGCKQAVEVILSVLAR-----PGANVLLPRPGWPYYEGI---AQRK 151
           K        D++ T G   A+      LA       G  + +  P +  Y  I      +
Sbjct: 157 KDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYE 216

Query: 152 QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211
            VEV       + +WE++ + +E L D +  A++++NP NP    F  + L  I +   K
Sbjct: 217 LVEV-DLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEK 275

Query: 212 -LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV-----ITLGSISKRWLVPGWRFGWLV 265
             ++M+++DEVYG              F SI  V     + + S SK +   GWR G + 
Sbjct: 276 NPKLMIISDEVYGAFVPN---------FKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIA 326

Query: 266 TNDPN 270
            N+ N
Sbjct: 327 LNEKN 331

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score =  117 bits (296), Expect = 1e-30
 Identities = 53/270 (19%), Positives = 91/270 (33%), Gaps = 32/270 (11%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEA-EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
             V+ L  GD T  P   +  EA   +I           Y  + G+P  R+ +++   R 
Sbjct: 33  HTVINLSIGDTT-QPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRG 91

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWP-YYEGIAQRKQVEVRHFD 159
               + A +++++ G K  +  +LS    P   V +  P +P Y +        E+    
Sbjct: 92  F---VDAKEIFISDGAKVDLFRLLSFFG-PNQTVAIQDPSYPAYLDIARLTGAKEIIALP 147

Query: 160 LLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMARKLRVMVVA 218
            L E  +  +              ++ +  P NP G V     L+ I   A +  ++++ 
Sbjct: 148 CLQENAFFPEFPEDTH------IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILF 201

Query: 219 DEVYGHLTFGSIPYTPMGLFGSI--VP-----VITLGSISKRWLVPGWRFGWLVTNDPNG 271
           D  Y        P  P     SI  +P      I + S SK     G R GW V      
Sbjct: 202 DAAYSTFISD--PSLPK----SIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELT 255

Query: 272 IFQKSGIIDS---IKDCLSIYSDIPTFIQV 298
                 +I          + ++      Q 
Sbjct: 256 YADGHFVIQDWERFLS--TTFNGASIPAQE 283

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score =  115 bits (290), Expect = 1e-29
 Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 20/248 (8%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           AS I  + K   RP ++    G   P  FP    A EA   I+          Y+   G 
Sbjct: 19  ASTIRELLKLTQRPGILSFAGGLPAPELFPKEEAA-EAAARILREKGEVALQ-YSPTEGY 76

Query: 87  PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG 146
            P R  +A+++       +  ++V +T G +QA++++  V    G+ VLL  P +     
Sbjct: 77  APLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ 130

Query: 147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP--GNPCGNVFTYHHLQE 204
             + +           E     DLDA+E +  +     + + P   NP G +      + 
Sbjct: 131 AFRLQGPRFLTVPAGEEG---PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKR 187

Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLVPGWRF 261
           + +M  +  ++VV D+ Y  L FG      +           VI LGS SK  L PG R 
Sbjct: 188 LLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSK-VLSPGLRV 246

Query: 262 GWLVTNDP 269
            + V +  
Sbjct: 247 AFAVAHPE 254

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score =  113 bits (284), Expect = 7e-29
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 19/252 (7%)

Query: 28  SLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87
            L   +  ++  +    VPL  G+P       T     DA+  ++   +   Y   +G+P
Sbjct: 16  RLHEAMQGISAPEGMEAVPLHIGEPK----HPTPKVITDALTASLH--ELEKYPLTAGLP 69

Query: 88  PARRAIADYLSR--DLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-----VLLPRPG 140
             R+A A++L R  D     + +++   LG ++A+   +  +  P ++     ++ P P 
Sbjct: 70  ELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPF 129

Query: 141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200
           +  YEG       E+ HF   P  ++  D  ++     K T  + + +P NP G+V    
Sbjct: 130 YQIYEGATLLGGGEI-HFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLD 188

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTFG-----SIPYTPMGLFGSIVPVITLGSISKRWL 255
             +E+ ++  K   ++ +DE Y  + F              L  S   ++   S+SKR  
Sbjct: 189 GWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSN 248

Query: 256 VPGWRFGWLVTN 267
           VPG R G++  +
Sbjct: 249 VPGLRSGFVAGD 260

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score =  109 bits (275), Expect = 2e-27
 Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 19/253 (7%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           +SII  + K       +  G G  DP  FP  +   E    I++         Y+T  G 
Sbjct: 30  SSIIREILKFAADKDAISFGGGVPDPETFP-RKELAEIAKEIIEKEYHYTLQ-YSTTEGD 87

Query: 87  PPARRAIADYLSRDL-PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
           P  ++ I   L R      L  D++  T+G +QA+++I  +     +  +L  P +    
Sbjct: 88  PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI 147

Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP---------GNPCGNV 196
              ++         L  +    +DL+ +E    +      I             NP G  
Sbjct: 148 NAFRQYLANFVVVPLEDDG---MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT 204

Query: 197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV 256
            +    + + E+A K  + +V D+ YG L +      P+   G    V+ L + SK  L 
Sbjct: 205 TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK-VLA 263

Query: 257 PGWRFGWLVTNDP 269
           PG R G +  +  
Sbjct: 264 PGLRIGMVAGSKE 276

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score =  109 bits (274), Expect = 2e-27
 Identities = 53/248 (21%), Positives = 79/248 (31%), Gaps = 38/248 (15%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEA-EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
             V+ LG GD T  P       A      +      ++ Y    G  P R AIA      
Sbjct: 56  AQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGG 114

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY------------EGIA 148
               +  DDV+V+ G K  +  +  +       + +  P +P Y                
Sbjct: 115 --LGIGDDDVFVSDGAKCDISRLQVMFG-SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD 171

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAE 207
            +K   + +    PE  +  DL  V          ++    P NP G   T   L ++ E
Sbjct: 172 VQKYGNIEYMRCTPENGFFPDLSTVG------RTDIIFFCSPNNPTGAAATREQLTQLVE 225

Query: 208 MARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VP-----VITLGSISKRWLVPGWR 260
            A+K   ++V D  Y        P        SI  +P      +   S S      G R
Sbjct: 226 FAKKNGSIIVYDSAYAMYMSDDNPR-------SIFEIPGAEEVAMETASFSNYAGFTGVR 278

Query: 261 FGWLVTND 268
            GW V   
Sbjct: 279 LGWTVIPK 286

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score =  108 bits (271), Expect = 6e-27
 Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 26/257 (10%)

Query: 30  ASIIDSVNKNDPRP------VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNC-- 79
            S +  V K           ++ L  G  DP   P           I   V   +     
Sbjct: 16  GSALADVMKKASELQKKGVKLISLAAGDPDPELIP-----RAVLGEIAKEVLEKEPKSVM 70

Query: 80  YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRP 139
           Y   +GIP  R  +A +L +    ++S +++ +T+G   A++++  VL  PG  V+   P
Sbjct: 71  YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENP 130

Query: 140 GWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM-------VIINPGNP 192
            +       ++   ++    +  +    + +D +E    +  A          I    NP
Sbjct: 131 SYINTLLAFEQLGAKIEGVPVDNDG---MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNP 187

Query: 193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISK 252
            G   +    + + E+A K  ++++ D  Y  + +      P+    +   VI  G++SK
Sbjct: 188 MGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSK 247

Query: 253 RWLVPGWRFGWLVTNDP 269
             L  G+R GW++    
Sbjct: 248 V-LGTGFRIGWIIAEGE 263

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score =  107 bits (270), Expect = 9e-27
 Identities = 51/245 (20%), Positives = 82/245 (33%), Gaps = 35/245 (14%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEA-EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRD 100
             ++ LG GD T  P  +   +A   A         ++ Y    G    R A+A      
Sbjct: 69  AKIISLGIGDTT-EPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGH 127

Query: 101 LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRK------ 151
                +AD+++++ G K  +  I  +       V +  P +P Y     +          
Sbjct: 128 --AGRAADEIFISDGSKCDIARIQMMFG-SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT 184

Query: 152 -QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN-PGNPCGNVFTYHHLQEIAEMA 209
               + +    P+ ++  DL   +         ++    P NP G   T   L E+   A
Sbjct: 185 GFDGIEYMVCNPDNHFFPDLSKAK------RTDIIFFCSPNNPTGAAATRAQLTELVNFA 238

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VP-----VITLGSISKRWLVPGWRFG 262
           RK   ++V D  Y        P  P     +I  +P      I   S SK     G R G
Sbjct: 239 RKNGSILVYDAAYALYISN--PDCPK----TIYEIPGADEVAIETCSFSKYAGFTGVRLG 292

Query: 263 WLVTN 267
           W V  
Sbjct: 293 WTVVP 297

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score =  107 bits (269), Expect = 9e-27
 Identities = 34/241 (14%), Positives = 69/241 (28%), Gaps = 39/241 (16%)

Query: 41  PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI----PPARRAIADY 96
                 +  GD      +    +   A++  V       Y  N           + I + 
Sbjct: 55  QGCSADVASGDGLFLEEYWKQHKEASAVL--VSPWHRMSYFFNPVSNFISFELEKTIKEL 112

Query: 97  LSRDLPYKLSADDVYVTLGCKQAVEVILSVLA--------RPGANVLLPRPGWPYYEGIA 148
                        +   +G  Q +  ++  L+         P + V+   P +P +    
Sbjct: 113 HEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT 172

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +        +       W  +      +++      ++ +P NP G +        + + 
Sbjct: 173 K--------YFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL-----RHAVIKG 219

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
            +      + D VY    +  I Y            I L ++SK     G RFGW +  D
Sbjct: 220 CK-----SIYDMVYYWPHYTPIKYKAD-------EDILLFTMSKFTGHSGSRFGWALIKD 267

Query: 269 P 269
            
Sbjct: 268 E 268

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score =  107 bits (270), Expect = 1e-26
 Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 17/250 (6%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           AS +  + K      ++ L  G  +P  FP      +    I++         Y T  G 
Sbjct: 63  ASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIR-DILVEIMEKYADKALQ-YGTTKGF 120

Query: 87  PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG 146
            P R  +  +L +        +D+ +T G +QA+++I  V   PG  V++  P +     
Sbjct: 121 TPLRETLMKWLGKRYG-ISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ 179

Query: 147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA-----MVIINP--GNPCGNVFTY 199
                + +     L  E    + ++ +E    +  +      +V   P   NP G     
Sbjct: 180 AFNFYEPQYIQIPLDDEG---MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNE 236

Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
              + + E+A +   +VV D+ YG L +   P   +    +   VI LG+ SK  L PG+
Sbjct: 237 DRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK-ILAPGF 295

Query: 260 RFGWLVTNDP 269
           R GW+V +  
Sbjct: 296 RIGWMVGDPG 305

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  103 bits (260), Expect = 2e-25
 Identities = 54/279 (19%), Positives = 100/279 (35%), Gaps = 23/279 (8%)

Query: 38  KNDPRP-VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY 96
             + +        G  T     +    + DA+ + +   +   YA   GI   R      
Sbjct: 42  SAEAKSTTYNATIGMAT-NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQK 100

Query: 97  LSRD---LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQ 152
           + RD   L    +     VT      + ++  +       +LLP   W  Y+ +   R  
Sbjct: 101 MLRDNPELSID-NMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNG 159

Query: 153 VEVRHFDLLPERNWEVDLDA-VEALADK-NTAAMVIIN-PGNPCGNVFTYHHLQEIAEMA 209
             ++ + +  +++     D+ VEAL        ++I+N P NP G   T+  +  I E  
Sbjct: 160 ANLQTYPIF-DKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAI 218

Query: 210 RKLR-----VMVVADEVYGHLTFG-----SIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
           + L      V+ V D+ Y  L +      S+      L  + +  I L   +K +   G+
Sbjct: 219 KALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF 278

Query: 260 RFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQ 297
           R G++     +    K  +   +K  + S  S  P   Q
Sbjct: 279 RVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQ 316

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score = 98.5 bits (245), Expect = 1e-23
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 35/239 (14%)

Query: 41  PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-----RRAIAD 95
              VV L +GDPTA+  +   +     +         + ++  + +          AI D
Sbjct: 21  SDFVVNLDHGDPTAYEEYWRKMGDRCTVTIR-GCDLMSYFSDMTNLCWFLEPELEDAIKD 79

Query: 96  YLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA----NVLLPRPGWPYYEGIAQRK 151
                         + V  G  Q  +  +  L+        +V+   P +  Y       
Sbjct: 80  LHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET--- 136

Query: 152 QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK 211
                    +    ++ + DA      K     ++ +P NP G +      + +      
Sbjct: 137 -------TYVRSGMYKWEGDA-WGFDKKGPYIELVTSPNNPDGTI-----RETVVNRPDD 183

Query: 212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTNDP 269
               V+ D  Y    +  I               I L + SK     G R GW +  D 
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRR--------QDHDIMLFTFSKITGHAGSRIGWALVKDK 234

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 90.3 bits (225), Expect = 8e-21
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 22/221 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK 117
           F T      AI DAV+   F  Y  +       +A A++ +    Y+   + ++      
Sbjct: 35  FSTCPAVLQAITDAVQREAFG-YQPDG--SLLSQATAEFYADRYGYQARPEWIFPIPDVV 91

Query: 118 QAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERNWEVDLDAVE 174
           + + + +       + V++P P + P++  +   QR+ + +       +    ++L  VE
Sbjct: 92  RGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFI-------DATGGINLHDVE 144

Query: 175 ALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP 234
                   ++++ NP NP G VF    L E+ ++A +    V+ DE++  L F    +T 
Sbjct: 145 KGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG-QHTV 203

Query: 235 MGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
                 +        IT+ + SK W + G +   ++ ++P+
Sbjct: 204 ---AAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPS 241

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 54/251 (21%), Positives = 86/251 (34%), Gaps = 29/251 (11%)

Query: 44  VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNC---YATNSGIPPARRAIADYLS 98
           ++ L  G  +P  FP     +  E+                Y+ ++GIP     +     
Sbjct: 33  MISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQI 92

Query: 99  R-------DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK 151
           +         P      D+ VT G +Q +  +  ++  PG NVLL  P +          
Sbjct: 93  KLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPL 152

Query: 152 QVEVRHFD-----LLPE------RNWEVDLDAVEALADKNTAAMVIINP--GNPCGNVFT 198
              + +       ++P+        W+           KNT   +   P   NP GN  T
Sbjct: 153 GCNIINVASDESGIVPDSLRDILSRWK---PEDAKNPQKNTPKFLYTVPNGNNPTGNSLT 209

Query: 199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG 258
               +EI E+ARK   +++ D+ Y  L F                VI   S SK  +  G
Sbjct: 210 SERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI-ISSG 268

Query: 259 WRFGWLVTNDP 269
            R G+L    P
Sbjct: 269 LRIGFLTGPKP 279

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 88.7 bits (221), Expect = 3e-20
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA--RRAIADYLSRDLPYKLSADDVYVTLG 115
           F TA    +A+   +  G F  Y   S         AIA + S      + +  V     
Sbjct: 40  FATAPCIIEALNQRLMHGVFG-Y---SRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPS 95

Query: 116 CKQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN-WEVDLD 171
               V  ++   +  G  V++  P +  +Y+ I   QR  + V    L  + + W  D+ 
Sbjct: 96  VIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPV---ALEKQADGWFCDMG 152

Query: 172 AVEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI 230
            +EA LA      M++ +P NP G V+T   L+ +A++  +  V V++DE++  + +G  
Sbjct: 153 KLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ 212

Query: 231 PYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGWLVTNDPN 270
           P+ P   + ++       L S SK + +P     + +  + +
Sbjct: 213 PHIP---WSNVARGDWALLTSGSKSFNIPALTGAYGIIENSS 251

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 88.6 bits (220), Expect = 4e-20
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 22/204 (10%)

Query: 85  GIPPARRAIADYLSRDLPY-------KLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137
           G+P AR   A YL              L    + +T      V             +++ 
Sbjct: 71  GLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVT 130

Query: 138 RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVE-ALADKNTAAMVIINP--GNPCG 194
            PG+  +  + Q    E+   D+  +     D+DAVE       +   ++  P   NP G
Sbjct: 131 VPGYDRHFLLLQTLGFELLTVDMQSDG---PDVDAVERLAGTDPSVKGILFVPTYSNPGG 187

Query: 195 NVFTYHHLQEIAEM-ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-------VIT 246
              +    + +A + A      + AD+ Y               F  +            
Sbjct: 188 ETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV 247

Query: 247 LGSISKRWLVPGWRFGWLVTNDPN 270
             S SK     G   G++ +++ N
Sbjct: 248 FASTSKI-TFAGAGLGFVASSEDN 270

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 87.6 bits (218), Expect = 7e-20
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
            ++I +Y       KL    + +  G   A E+I  +       +L+  P +  YE  A+
Sbjct: 67  NKSIENY------LKLKDIGIVLGNG---ASEII-ELSISLFEKILIIVPSYAEYEINAK 116

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYHHLQEIAEM 208
           +  V V    L  + N  +D + + +  D      VII NP NP G +        + ++
Sbjct: 117 KHGVSVVFSYL--DENMCIDYEDIISKIDDVD--SVIIGNPNNPNGGLINKEKFIHVLKL 172

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND 268
           A + +  ++ DE +   T G    + +G   +   +  + +++K + +PG RFG+ +TN+
Sbjct: 173 AEEKKKTIIIDEAFIEFT-GDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN 231

Query: 269 PN 270
             
Sbjct: 232 KE 233

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 87.6 bits (218), Expect = 8e-20
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 21/224 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-RRAIADYLSRDLPYKLSADDVYVTLGC 116
           F    E + AI D      +  Y   +       +A+ D+   +  Y    +D+    G 
Sbjct: 43  FEVMPEVKQAIHDYAEQLVYG-Y---TYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGV 98

Query: 117 KQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN-WEVDLDA 172
             A+ + +    + G  VL+  P + P+   +    RK V      L  E   +++D + 
Sbjct: 99  VPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSN---SLKEENGLFQIDFEQ 155

Query: 173 VEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           +E  + + +    ++ NP NP G V+    L++I  + +K  V++V+DE++  LT     
Sbjct: 156 LENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHE 215

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
           +     F ++ P      + L S +K + + G +  + +  +P 
Sbjct: 216 HVS---FNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPT 256

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 45/268 (16%), Positives = 70/268 (26%), Gaps = 38/268 (14%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAV-EAEDAIVDAVRSGKFNCYATNSG 85
             +     +   +   + L  G             +                N Y    G
Sbjct: 19  EEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRN-YGGLLG 77

Query: 86  IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVIL--------------SVLARPG 131
           I   R   A+ L       L AD V    G    +   L                 A   
Sbjct: 78  IADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEK 131

Query: 132 ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP-- 189
              L P PG+  +  I +    E+ +  +  E     D+  V  L        +   P  
Sbjct: 132 VKWLCPVPGYDRHFTITEHFGFEMINVPMTDEG---PDMGVVRELVKDPQVKGMWTVPVF 188

Query: 190 GNPCGNVFTYHHLQEIAEMARKLR-VMVVADEVYGHLTFGSIPYTPMGLFGSIVP----- 243
           GNP G  F+    +E+AEM+       +V D  Y   T          +           
Sbjct: 189 GNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPN 248

Query: 244 -VITLGSISKRWLVPGWRFGWLVTNDPN 270
               + S SK     G    +  ++  N
Sbjct: 249 RFWFMSSTSKI-THAGSGVSFFASSKEN 275

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 21/224 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-RRAIADYLSRDLPYKLSADDVYVTLGC 116
           F+ A E   ++ + ++   F  Y     +P    +A+AD+   +   +   D      G 
Sbjct: 39  FKIAPEIMASMEEKLKVAAFG-Y---ESVPAEYYKAVADWEEIEHRARPKEDWCVFASGV 94

Query: 117 KQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN-WEVDLDA 172
             A+  ++     PG  +L+  P +  +Y  I    R+ +     DL+ E + + V+   
Sbjct: 95  VPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISS---DLIYENSKYSVNWAD 151

Query: 173 VEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           +E  LA  +   MV  NP NP G  ++   ++ IAE+  K +V++++DE++G L      
Sbjct: 152 LEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDED 211

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
            TP     ++       V++L S SK + +        +  +P+
Sbjct: 212 ITP---AFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPD 252

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 86.4 bits (215), Expect = 2e-19
 Identities = 41/224 (18%), Positives = 99/224 (44%), Gaps = 22/224 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-RRAIADYLSRDLPYKLSADDVYVTLGC 116
           F+ A    D++ + +    +  Y   +  P +   +I ++L R   +K+ ++ +  + G 
Sbjct: 44  FKAAPCIIDSLKNRLEQEIYG-Y---TTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGV 99

Query: 117 KQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN--WEVDLD 171
             A+ ++++ L +    +++  P + P+   +    R+ +      L    N  + +D +
Sbjct: 100 IPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIIS---PLQKLENGNYIMDYE 156

Query: 172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
            +E    K+    ++ NP NP G V+T   L+++ ++  K  V +++DE++  +      
Sbjct: 157 DIENKI-KDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK 215

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
           + P     SI        IT  + +K + + G +  ++V  D  
Sbjct: 216 HIP---MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK 256

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 21/224 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-RRAIADYLSRDLPYKLSADDVYVTLGC 116
           F+   E  + +   +       Y   +G     ++ +  ++     + +  D +  T G 
Sbjct: 43  FKNPPELIEGLKKYLDETVLG-Y---TGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGV 98

Query: 117 KQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN-WEVDLDA 172
             AV   +    +PG  V++  P + P++  I   +RK +E    +LL +   + +D   
Sbjct: 99  VPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIEC---ELLEKDGYYTIDFQK 155

Query: 173 VEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           +E    DKN  A++  +P NP G V+    LQ+I ++  K  +M+ +DE++  L      
Sbjct: 156 LEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYE 215

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
           +T    F SI        IT  + SK + + G     ++  +P+
Sbjct: 216 HTV---FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPD 256

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 21/224 (9%)

Query: 58  FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA-RRAIADYLSRDLPYKLSADDVYVTLGC 116
           F    E ++AI++  R   F  Y   +       +A+ D+  ++  Y +  +D+    G 
Sbjct: 73  FLPVPEIKEAIINYGREHIFG-Y---NYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGV 128

Query: 117 KQAVEVILSVLARPGANVLLPRPGW-PYYEGI--AQRKQVEVRHFDLLPERN-WEVDLDA 172
             A+ + L   +  G  VL+  P + P+   I     + VE     L      +E+D + 
Sbjct: 129 VPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVEN---SLQIINGRFEIDFEQ 185

Query: 173 VEA-LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP 231
           +E  + D N    ++ +P NP G V+    L +IAE+ +K  V++V+DE++  L      
Sbjct: 186 LEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT 245

Query: 232 YTPMGLFGSIVP-----VITLGSISKRWLVPGWRFGWLVTNDPN 270
           +       ++        I L S +K + + G +  + +  + +
Sbjct: 246 HHS---LNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNES 286

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 25/187 (13%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI-LSVLARPGANVLLPRPGWPYYEGIA 148
            +A+A +      +++ A  +    G     E I            ++  PG+  Y    
Sbjct: 65  HQALARH------HQVPASWILAGNG---ETESIFTVASGLKPRRAMIVTPGFAEYGRAL 115

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYHHLQEIAE 207
            +   E+R + L     W++    +EAL        + +  P NP G +     LQ IA+
Sbjct: 116 AQSGCEIRRWSLREADGWQLTDAILEALTPD--LDCLFLCTPNNPTGLLPERPLLQAIAD 173

Query: 208 MARKLRVMVVADEVYGHLTFGSIPYTP-----MGLFGSIVPVITLGSISKRWLVPGWRFG 262
             + L + ++ DE +       I + P     +        +  L S++K + +PG R G
Sbjct: 174 RCKSLNINLILDEAF-------IDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLG 226

Query: 263 WLVTNDP 269
           +LV +D 
Sbjct: 227 YLVNSDD 233

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 47/263 (17%), Positives = 78/263 (29%), Gaps = 27/263 (10%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNC--YATNS 84
             I    ++   +   + L  G         F   + A     D   +   +   Y    
Sbjct: 20  EDIKRKFDELKSKNLKLDLTRGKPSSEQLD-FADELLALPGKGDFKAADGTDVRNYGGLD 78

Query: 85  GIPPARRAIADYLSRDLPYKLSAD--------DVYVTLGCKQAVEVILSVLARPGANVLL 136
           GI   R+  AD L   +   L+ D        DV          + +           + 
Sbjct: 79  GIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWIC 138

Query: 137 PRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP--GNPCG 194
           P PG+  +  I +R   E+    +  +     D+DAVE L        + + P   NP G
Sbjct: 139 PVPGYDRHFSITERFGFEMISVPMNEDG---PDMDAVEELVKNPQVKGMWVVPVFSNPTG 195

Query: 195 NVFTYHHLQEIAEMARKLR-VMVVADEVYGHLTFGSIPYTPMGLFGSIVP------VITL 247
              T    + ++ M        VV D  Y   T        + + G              
Sbjct: 196 FTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF 255

Query: 248 GSISKRWLVPGWRFGWLVTNDPN 270
            S SK   + G    + +T+  N
Sbjct: 256 TSTSKI-TLAGAGVSFFLTSAEN 277

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 11/206 (5%)

Query: 63  EAEDAIVDAVR--SGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
                +V  V   + + N Y         R  +A Y+++     ++ D+++   G  + +
Sbjct: 47  ALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEIL 105

Query: 121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADK 179
           + +L     PG   L  +P +  +  +A+    E          ++ +D+D   E +  K
Sbjct: 106 QQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA--DFRIDMDVALEEIRAK 163

Query: 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG 239
               + +  P NP G+V +   L ++  +      +V+ DE Y    F   P     L  
Sbjct: 164 QPDIVFVTTPNNPTGDVTS---LDDVERIINVAPGIVIVDEAYAE--FSPSPSATTLLEK 218

Query: 240 SIVPVITLGSISKRWLVPGWRFGWLV 265
               ++   ++SK +   G R G+ V
Sbjct: 219 YPTKLVVSRTMSKAFDFAGGRLGYFV 244

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 10/178 (5%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R+ +AD+      Y+L  +++  T G  + +E++  VL     N ++  P +  Y   A 
Sbjct: 73  RKEVADF------YQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL 126

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
            +  EVR   L   ++ E DL+ +    D+ T  + I NP NP GN      +Q   +  
Sbjct: 127 IEGAEVREIPL--LQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRV 184

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
               V+VV DE Y        P     L  +   +I   + SK + +   R G+ + +
Sbjct: 185 PS-DVLVVLDEAYIEYVTPQ-PEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD 240

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV 122
                +   +     N Y   S     R  + + +        +  +V +  G  + + +
Sbjct: 47  ALRSELAARLGEVALNRYPVPSS-EALRAKLKEVMQVP-----AGMEVLLGNGSDEIISM 100

Query: 123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV-EALADKNT 181
           +    ARPGA V+ P PG+  Y   AQ   +E     L    ++ +D  A+  A+A+   
Sbjct: 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQP 158

Query: 182 AAMVIINPGNPCGNVFTYHHLQEIAEMA--RKLRVMVVADEVY 222
           A + +  P NP GN+F    ++ I   A     R +VV DE Y
Sbjct: 159 AIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY 201

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 73.3 bits (181), Expect = 4e-15
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 23/179 (12%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI-LSVLARPGANVLLPRPGWPYYEGIA 148
           R+ +A          +  + + VT G             A  G+  L+  P +  YE   
Sbjct: 56  RQMLAKR------NSVDNNAILVTNG---PTAAFYQIAQAFRGSRSLIAIPSFAEYEDAC 106

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +  + EV  +    +       +A       N     + NP NP G +     +  +   
Sbjct: 107 RMYEHEVCFYPSNED-----IGEAD----FSNMDFCWLCNPNNPDGRLLQRTEILRLLN- 156

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN 267
                   V D+ Y    F +              ++ + S S  + +PG R G++V N
Sbjct: 157 -DHPDTTFVLDQSYVS--FTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN 212

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 72.6 bits (179), Expect = 9e-15
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 22/183 (12%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA-NVLLPRPGWPYYEGIA 148
               A Y        +  + V V+ G  + +E+++     PG   +L   P +  Y   A
Sbjct: 64  IENYAQY------AGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA 117

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +   VE R    L   NW++DL  +    D     + + +P NP G +      + + E+
Sbjct: 118 ETIGVECRTVPTLD--NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLEL 174

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP----VITLGSISKRWLVPGWRFGWL 264
            R  + +VVADE Y       I + P       +     +  L ++SK + + G R G+ 
Sbjct: 175 TRG-KAIVVADEAY-------IEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFT 226

Query: 265 VTN 267
           + N
Sbjct: 227 LAN 229

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
              +A +      +++ A  + +T G  + +   +   A   A +++P   +   E  A+
Sbjct: 57  GNKLAAH------HQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK 110

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII--NPGNPCGNVFTYHHLQEIAE 207
              ++V    +L   NW  D++ ++A     +   ++   NP NP G   T      I  
Sbjct: 111 IAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTG---TITPADVIEP 165

Query: 208 MARKL--RVMVVADEVY 222
                    M + DE Y
Sbjct: 166 WIASKPANTMFIVDEAY 182

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365

 Score = 66.8 bits (164), Expect = 9e-13
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 18/184 (9%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           +  +A        YK+  +++ +  G  Q +E  +          L     +  YE  A+
Sbjct: 71  KSTLAQK------YKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK 124

Query: 150 RKQVEVRHFDLLPERNWEV-DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
           +   +             + +   +          + +  P NP G         E  E 
Sbjct: 125 QCGAKCYK---TQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLG---ECLDASEATEF 178

Query: 209 ARKL--RVMVVADEVYGH---LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
            + +    +VV D  Y              P  L      V+ LG+ SK + + G R G+
Sbjct: 179 IKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGY 238

Query: 264 LVTN 267
            + N
Sbjct: 239 GIAN 242

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 61.0 bits (149), Expect = 9e-11
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ 149
           R    +       Y      + +  G  + +  ++   A  G  +    P + YY  +A+
Sbjct: 71  REVAGEL------YGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE 124

Query: 150 RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
            +   VR F L        D                +  P  P G       L+ I E+A
Sbjct: 125 VQGARVRTFGL------TGDFRIAGFPERYEGKVFFLTTPNAPLG---PSFPLEYIDELA 175

Query: 210 RKLRVMVVADEVY 222
           R+   M+V DE Y
Sbjct: 176 RRCAGMLVLDETY 188

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 23/177 (12%)

Query: 90  RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI-LSVLARPGANVLLPRPGWPYYEGIA 148
            R +A++      +    D++ +  G     E              +   PG+  Y    
Sbjct: 57  MRKLAEH------FSCPEDNLMLVRG---IDECFDRISAEFSSMRFVTAWPGFDGYRARI 107

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
               +      L    +  +D +            +V+ NP NP G   +     E+ ++
Sbjct: 108 AVSGLRHFEIGLTD--DLLLDPND--LAQVSRDDCVVLANPSNPTGQALS---AGELDQL 160

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
            ++   +++ DE Y    + S     +         +   S SK + + G R G L 
Sbjct: 161 RQRAGKLLI-DETYVD--YSSFRARGLAYGE---NELVFRSFSKSYGLAGLRLGALF 211

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 29/165 (17%)

Query: 63  EAEDAIVDAVRSGKFNCYATNSGIPPA-----RRAIADYLSRDLPYKLSADDVYVTLGCK 117
           +  D +   + S     Y        +        I  YL  D    LS ++V V  G  
Sbjct: 36  DLVDEVFRRLNSDALRIY------YDSPDEELIEKILSYLDTD---FLSKNNVSVGNG-- 84

Query: 118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA 177
            A E+I  V+       +   P +  Y   A+    +     L    +  +    V    
Sbjct: 85  -ADEII-YVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNVG--- 137

Query: 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
                 + I NP NP G+VF    ++ I +        V  DE Y
Sbjct: 138 --EGDVVFIPNPNNPTGHVFEREEIERILKTG----AFVALDEAY 176

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 38/192 (19%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 38  KNDPRP-VVPLG---Y----GDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPA 89
           K + R  VV           G+       +   E   ++ D+    +   YA  +GIP  
Sbjct: 33  KENGRENVVNGTLGAIHDEEGNLVFLKTVK---EEYLSLSDS----EHVGYAPIAGIPDF 85

Query: 90  RRAIADYLSRDLPYKLSADDVYV----TLGCKQAVEVILSVLARPGANVLLPRPGWPYYE 145
             A          +     + ++    T G    +  ++     PG  VL     W  Y 
Sbjct: 86  LCAAEK-----ECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYR 140

Query: 146 GIAQRKQVEVRHFDLLPERNWEVDLD---AVEALADKNTAAMVIINPG--NPCGNVFTYH 200
            I       +  + L  E N          V  LA K T  +VI N    NP G      
Sbjct: 141 VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDK 200

Query: 201 HLQEIAEMARKL 212
               I    + L
Sbjct: 201 DWDSILNFLKDL 212

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 30/147 (20%)

Query: 89  ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR-------PGW 141
               +  +L          D   VT G ++A   ++  LA+  A V++            
Sbjct: 59  IHNQLPKFLG--------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAA 110

Query: 142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT----AAMVIIN-PGNPCGNV 196
                  +R  + +         ++ +  +      ++        + +I  P    GN+
Sbjct: 111 -------ERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNL 163

Query: 197 FTYHHLQEIAEMARKLRVMVVADEVYG 223
                +++IA++  +  V ++ +  Y 
Sbjct: 164 ---PDVKKIAKVCSEYDVPLLVNGAYA 187

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 13/77 (16%)

Query: 161 LPERNWEV-----DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM 215
           L      V     + +AV       T A+ +    NP   V     L+ +A +A +  V 
Sbjct: 116 LSLMGVTVRYVDPEPEAVREALSAKTRAVFVETVANPALLVP---DLEALATLAEEAGVA 172

Query: 216 VVADEVYGHLTFGSIPY 232
           +V D      TFG+   
Sbjct: 173 LVVDN-----TFGAAGA 184

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 119 AVEVILSVLARPGANVLLPR-PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA 177
           A+   +  L        LP  PG P  E   +   V  ++F+          +  +    
Sbjct: 88  AILATILALKPKKVIHYLPELPGHPSIERSCKI--VNAKYFES-------DKVGEILNKI 138

Query: 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL 237
           DK+T  ++  +  +    V    + +++   A+    +V  D        G      + L
Sbjct: 139 DKDTLVIITGSTMDL--KVIELENFKKVINTAKNKEAIVFVD-----DASG----ARVRL 187

Query: 238 FGSIVPVITLG 248
             +  P + LG
Sbjct: 188 LFNQPPALKLG 198

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 23/117 (19%)

Query: 122 VILSVLARPGANVLLP----RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA 177
            IL+ +   G +VL+      P   +   I  +  V    FD L           +    
Sbjct: 113 SILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-------IGADIVKHL 164

Query: 178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR--VMVVADEVYGHLTFGSIPY 232
             NT  + + +PG+        H +  I    R +    +++ D      T+ +   
Sbjct: 165 QPNTKIVFLESPGSI---TMEVHDVPAIVAAVRSVVPDAIIMIDN-----TWAA-GV 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.98
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.97
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.97
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.97
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.96
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.95
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.94
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.94
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.94
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.94
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.94
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.94
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.93
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.93
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.93
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.93
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.93
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.93
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.93
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.93
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.93
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.92
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.92
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.92
1svv_A	359	Threonine aldolase; structural genomics, structura	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.92
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.92
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.92
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.92
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.92
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.91
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.91
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.91
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.91
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.91
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.91
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.91
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.91
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.91
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.91
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.9
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.9
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.9
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.9
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.9
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.9
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.9
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.9
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.9
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.9
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.9
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.9
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.9
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.9
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.9
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.9
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.89
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.89
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.89
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.89
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.89
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.89
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.89
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.89
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.89
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.88
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.88
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.88
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.88
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.88
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.88
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.88
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.88
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.88
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.88
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.88
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.88
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.88
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.88
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.87
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.87
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.87
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.87
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.87
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.87
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.87
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.87
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.87
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.87
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.87
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.86
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.86
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.86
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.86
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.86
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.86
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.85
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.85
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.85
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.85
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.85
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.85
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.85
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.85
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.85
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.84
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.84
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.84
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.83
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.83
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.82
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.82
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.81
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.81
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.81
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.81
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.81
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.8
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.8
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.79
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.76
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.63
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.73
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.73
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.72
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.71
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.71
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.7
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.69
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.68
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.67
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.5
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.49
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.43
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.22
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.21
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.18
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.05
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.04
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.03
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.67
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	82.86
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	80.38

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=2.4e-42  Score=318.03  Aligned_cols=289  Identities=36%  Similarity=0.703  Sum_probs=231.4

Q ss_pred             cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022213            7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI   86 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~   86 (301)
                      +.|++.. ......+.++|+.+++.+..  ....++++|+|+.|+|..++.+++++.+.+++.+.+.......|++..|.
T Consensus        22 ~~w~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~   98 (427)
T 3dyd_A           22 SMWSVRP-SDMAKKTFNPIRAIVDNMKV--KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGF   98 (427)
T ss_dssp             --CCCCC-CC----------------CC--CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCC
T ss_pred             cccCcch-hhHhhcccchHHHHHHHHhh--cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence            4699544 44556667789998875532  12346788999999987655678899999999999887666689888899


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      .++|+++++++.+. +..+++++|++|+|+++|++.++++++++||+|+++.|+|.++...++..|.+++.+++.++.++
T Consensus        99 ~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  177 (427)
T 3dyd_A           99 LSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSW  177 (427)
T ss_dssp             HHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             HHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCC
Confidence            99999999999764 66678899999999999999999999999999999999999999999999999999998776778


Q ss_pred             CCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEE
Q 022213          167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVIT  246 (301)
Q Consensus       167 ~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~  246 (301)
                      .+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++..+.++..+....++|+
T Consensus       178 ~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~  257 (427)
T 3dyd_A          178 EIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILS  257 (427)
T ss_dssp             EECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEE
T ss_pred             CCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEE
Confidence            89999999999888899999999999999999999999999999999999999999999998777777777777778999


Q ss_pred             EecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          247 LGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++||||.|+++|+|+||+++++....+ .+++++.++.......+++.+.|.++
T Consensus       258 ~~S~sK~~~~~G~riG~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~a~  310 (427)
T 3dyd_A          258 CGGLAKRWLVPGWRLGWILIHDRRDIF-GNEIRDGLVKLSQRILGPCTIVQGAL  310 (427)
T ss_dssp             EEESTTTSSCGGGCCEEEEEECSTTSS-HHHHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred             EeeccccCCCcCcceEEEEecCcchhh-HHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            999999999999999999998753332 13466677665433456777877653

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=1.5e-41  Score=308.52  Aligned_cols=270  Identities=24%  Similarity=0.387  Sum_probs=228.8

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      .+.+.+..+.+.++.+.....+.. . .++++|+|+.|+|.    +++++.+.+++.+.+... ...|++..|..++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~   76 (385)
T 1b5p_A            4 LSRRVQAMKPSATVAVNAKALELR-R-QGVDLVALTAGEPD----FDTPEHVKEAARRALAQG-KTKYAPPAGIPELREA   76 (385)
T ss_dssp             CCHHHHHCCCCHHHHHHHHHHHHH-H-TTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred             hhhHHhhcCcchHHHHHHHHHHHH-h-cCCCEEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence            456777788888888776543322 1 35789999999974    566788899988887653 3479888899999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           93 IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      +++++.+.++..+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|.+++.+++++++++.+|++.
T Consensus        77 ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  156 (385)
T 1b5p_A           77 LAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPER  156 (385)
T ss_dssp             HHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHH
T ss_pred             HHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHH
Confidence            99999988888888999999999999999999999999999999999999999999999999999998754577899999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISK  252 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK  252 (301)
                      +++.++++++++++++||||||.+++.+++++|+++|++||+++|+||+|+.+.+++ ...++..+.. +++|+++||||
T Consensus       157 l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~SK  234 (385)
T 1b5p_A          157 VRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAP-EHTLTVNGAAK  234 (385)
T ss_dssp             HHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCT-TTEEEEEESTT
T ss_pred             HHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCC-CCEEEEEechh
Confidence            999998888999999999999999999999999999999999999999999998876 4556666655 68999999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      .|+++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       235 ~~~~~G~RiG~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  274 (385)
T 1b5p_A          235 AFAMTGWRIGYACGPK--------EVIKAMASVSRQSTTSPDTIAQWA  274 (385)
T ss_dssp             TTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHH
T ss_pred             hcCCcccceEEEEeCH--------HHHHHHHHHHhhccCCCCHHHHHH
Confidence            9999999999999843        47777776543 344677777764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=4.9e-41  Score=306.82  Aligned_cols=274  Identities=12%  Similarity=0.093  Sum_probs=214.0

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCCCCHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAV-RSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      ..++..+++.++.+.+.+.+    ...+++|+|+.|.| +..+.+++++.+.++.. .+ +....++|++..|.++||++
T Consensus         6 ~~~~~~~~~~i~~~~~~~~~----~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a   80 (405)
T 3k7y_A            6 SSLENIEVDNILKTAREFKE----DTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL   80 (405)
T ss_dssp             GGCCCCCCCHHHHHHHHHTT----SSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred             hcCCCCCCChHHHHHHHHhc----CCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence            35667889999998875532    12478999999974 32234567788888876 44 44456689999999999999


Q ss_pred             HHHHHhhhCCCCCCCCC--EEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           93 IADYLSRDLPYKLSADD--VYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~--i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      +++|+.+..+..+++++  +++|+|+++|+..+++++++  + |+|++++|+|.+|...++..|.+++.+++..++++++
T Consensus        81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  159 (405)
T 3k7y_A           81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDI  159 (405)
T ss_dssp             HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEE
T ss_pred             HHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCc
Confidence            99999776555566675  59999999999999999988  8 9999999999999999999999999999854456889


Q ss_pred             CHHHHHhhccc--CccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCC--CCCcccc-CCCC
Q 022213          169 DLDAVEALADK--NTAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIP--YTPMGLF-GSIV  242 (301)
Q Consensus       169 ~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~--~~~~~~~-~~~~  242 (301)
                      |++.+++.+++  ++++++++.| |||||.+++.+++++|+++|++|++++|+||+|.++.+++..  ..++..+ ....
T Consensus       160 d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~  239 (405)
T 3k7y_A          160 NYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI  239 (405)
T ss_dssp             CHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred             CHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence            99999998864  4567777665 899999999999999999999999999999999999886421  2223222 2346


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH----Hhhh-cccCCCccccccc
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI----KDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~q~~  299 (301)
                      ++|+++||||+|+++|+|+||++++..+     +++++++    +... ...++++.+.|.+
T Consensus       240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~q~~  296 (405)
T 3k7y_A          240 AFSVCQSFSKNMSLYGERAGALHIVCKN-----QEEKKIVFNNLCFIVRKFYSSPVIHTNRI  296 (405)
T ss_dssp             CEEEEEECTTTSCCTTTTEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cEEEEeeCCccCCCccccceEEEEEeCC-----HHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence            8999999999999999999999764322     2344443    3332 2344667777765

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-39  Score=298.06  Aligned_cols=287  Identities=28%  Similarity=0.575  Sum_probs=229.2

Q ss_pred             ccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022213            8 KWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP   87 (301)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~   87 (301)
                      +|+...+. ......+.++.+...+ ...  ..++++|+|+.|+|..++.+++++.+.+++.+++.......|++..|..
T Consensus         3 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~   78 (416)
T 1bw0_A            3 SWDVSMSN-HAGLVFNPIRTVSDNA-KPS--PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSP   78 (416)
T ss_dssp             -CCCCCCH-HHHTCCCHHHHHHHTC-CCC--CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCH
T ss_pred             ccccCchh-hhhccccHHHHHHHHH-HHh--hcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCH
Confidence            59986555 4445555677766532 111  1236799999999865456788899999999988765556798878999


Q ss_pred             HHHHHHHHHHhh------hCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           88 PARRAIADYLSR------DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        88 ~lr~~ia~~l~~------~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      ++|+++++++.+      .++..+++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++
T Consensus        79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~  158 (416)
T 1bw0_A           79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCR  158 (416)
T ss_dssp             HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecC
Confidence            999999999982      24555788999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC----CCCCccc
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI----PYTPMGL  237 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~----~~~~~~~  237 (301)
                      +++++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++.    .+.++..
T Consensus       159 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~  238 (416)
T 1bw0_A          159 PENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD  238 (416)
T ss_dssp             GGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTS
T ss_pred             cccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHH
Confidence            555677999999999988888999999999999999999999999999999999999999999988765    4556665


Q ss_pred             cCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ++...++++++|+||.|+++|+|+||++++++...+  +++...++.......+++.+.|.++
T Consensus       239 ~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~  299 (416)
T 1bw0_A          239 FETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG--PSFLEGLKRVGMLVCGPCTVVQAAL  299 (416)
T ss_dssp             SCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC--HHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred             ccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhH--HHHHHHHHHHhccccCCCcHHHHHH
Confidence            655567899999999999999999999987641122  2344444443222335677777653

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=1e-39  Score=302.31  Aligned_cols=273  Identities=22%  Similarity=0.295  Sum_probs=230.3

Q ss_pred             ccccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCC
Q 022213            6 ENKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATN   83 (301)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~   83 (301)
                      ...|+.+.+.+.+..+++.++.+.+...       .+++|+|+.|.|+.  .+.+++.+.+++.++++..  ...+|++.
T Consensus        47 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~-------~~~~i~l~~g~p~~--~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~  117 (448)
T 3aow_A           47 LGDVERFFSKKALEMRASEVRELLKLVE-------TSDIISLAGGLPNP--KTFPKEIIRDILVEIMEKYADKALQYGTT  117 (448)
T ss_dssp             TSCGGGGCCHHHHHCCCCHHHHHHHHHH-------TSSSEECCCCCCCG--GGSCHHHHHHHHHHHHHHSHHHHHSCCCT
T ss_pred             ccchHHHhhHHHhcCCCcHHHHHHHhcc-------CCCcEeCCCCCCCc--hhCCHHHHHHHHHHHHHhhhHHHhCCCCC
Confidence            3459988999999999999998876432       46799999999863  3456788888888887643  23479988


Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE  163 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~  163 (301)
                      .|..+||+++++++.+.++.. ++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++.+
T Consensus       118 ~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~  196 (448)
T 3aow_A          118 KGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE  196 (448)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred             CCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC
Confidence            899999999999997767766 7889999999999999999999999999999999999999999999999999988542


Q ss_pred             CCCCCCHHHHHhhcc----c--CccEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213          164 RNWEVDLDAVEALAD----K--NTAAM-VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~----~--~~~~v-~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                         ++|++.|++.++    +  +++++ ++++|+||||.+++.+++++|+++|++||++||+||+|..+.|++..+.++.
T Consensus       197 ---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~  273 (448)
T 3aow_A          197 ---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIK  273 (448)
T ss_dssp             ---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTG
T ss_pred             ---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence               389999999886    5  67776 4689999999999999999999999999999999999999999776666777


Q ss_pred             ccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      .++..+++|++.||||.++ +|+|+||++++.        +++++++.... ...+++.++|.++
T Consensus       274 ~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~  329 (448)
T 3aow_A          274 ALDNEGRVIYLGTFSKILA-PGFRIGWMVGDP--------GIIRKMEIAKQSTDLCTNVFGQVVA  329 (448)
T ss_dssp             GGCTTSCEEEEEESTTTTC-GGGCCEEEEECH--------HHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             hcCCCCCEEEEccchhhcc-ccccEEEEEeCH--------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            7766678999999999998 999999999853        47777776543 2446788888653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.6e-39  Score=298.10  Aligned_cols=268  Identities=24%  Similarity=0.379  Sum_probs=230.3

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATNSGIPPARR   91 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~   91 (301)
                      .+++++..+++.++.+.+...       ++++|+|+.|+|.    +++++.+.+++.+++.... ...|++..|..++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-------~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~   74 (422)
T 3fvs_A            6 QARRLDGIDYNPWVEFVKLAS-------EHDVVNLGQGFPD----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTK   74 (422)
T ss_dssp             SCGGGTTCCCCHHHHHHHHHH-------TSCCEECCCSSCS----SCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHH
T ss_pred             HHHHhhccCccHHHHHHHHhh-------cCCceEeCCCCCC----CCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHH
Confidence            467778888888888876332       4689999999964    6788999999999987644 458998889999999


Q ss_pred             HHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC--------
Q 022213           92 AIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP--------  162 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~--------  162 (301)
                      ++++++.+.++..+++ ++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.+++.+        
T Consensus        75 ~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~  154 (422)
T 3fvs_A           75 ILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGEL  154 (422)
T ss_dssp             HHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSC
T ss_pred             HHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccccccccc
Confidence            9999999888888888 7999999999999999999999999999999999999999999999999999865        


Q ss_pred             --CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          163 --ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       163 --~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                        ..++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++..+.++..+..
T Consensus       155 ~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  234 (422)
T 3fvs_A          155 GSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG  234 (422)
T ss_dssp             CBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred             ccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc
Confidence              235678999999999888999999999999999999999999999999999999999999999998766666666653


Q ss_pred             -CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          241 -IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       241 -~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                       .++++++.|+||.|+++|+|+||+++++        +++.+++.... ...+++.+.|.+
T Consensus       235 ~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  287 (422)
T 3fvs_A          235 MWERTLTIGSAGKTFSATGWKVGWVLGPD--------HIMKHLRTVHQNSVFHCPTQSQAA  287 (422)
T ss_dssp             TGGGEEEEEEHHHHHTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             ccCcEEEEecchhccCCccceEEEEEeCH--------HHHHHHHHHHhhccCCCCcHHHHH
Confidence             3678999999999999999999999743        47777766543 244567777765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=1e-38  Score=290.61  Aligned_cols=278  Identities=18%  Similarity=0.335  Sum_probs=223.4

Q ss_pred             cchhhhcC--CcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCCCCCCCCH
Q 022213           13 DKQEHKAA--PAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCYATNSGIP   87 (301)
Q Consensus        13 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~   87 (301)
                      .+++.+..  .++.++++.+..........++++|+|+.|+|.    +++++.+.+++.+++....   ...|++..|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~   79 (398)
T 3ele_A            4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPS----IPAPQIVNDTIKELVTDYDSVALHGYTSAQGDV   79 (398)
T ss_dssp             SCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCC----SCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCH
T ss_pred             hhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCC----CCCCHHHHHHHHHHHhcCCccccCCcCCCCCcH
Confidence            45556665  577888876544322111135689999999864    5678899999998887532   45798888999


Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      ++|+++++++.+.++..+++++|++|+|+++++..++++++++| |+|+++.|+|.++...++..|.+++.++++. +++
T Consensus        80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~  158 (398)
T 3ele_A           80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHF  158 (398)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTS
T ss_pred             HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCC
Confidence            99999999999888888899999999999999999999999999 9999999999999999999999999999854 367


Q ss_pred             CCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK------LRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       167 ~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~------~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                      .+|++++++.++++++++++++|+||||.+++.+++++|+++|++      ||+++|+||+|..+.+++.....+..  .
T Consensus       159 ~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~  236 (398)
T 3ele_A          159 QIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK--Y  236 (398)
T ss_dssp             SCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG--T
T ss_pred             cCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh--h
Confidence            899999999998889999999999999999999999999999999      99999999999999987644433322  2


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc--cCCCccccccc
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI--YSDIPTFIQVC  299 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~  299 (301)
                      .+++++++|+||.++++|+|+||+++++.  +....++...+......  ..+++.+.|.+
T Consensus       237 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  295 (398)
T 3ele_A          237 YDNTLVCYSYSKSLSLPGERIGYVLVPDE--VYDKAELYAAVCGAGRALGYVCAPSLFQKM  295 (398)
T ss_dssp             CSSEEEEEESTTTSSCTTTCCEEEECCTT--STTHHHHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             cCCeEEEEehhhcCCCccceeEEEEEcch--hhhHHHHHHHHHHHhhhccccCCCHHHHHH
Confidence            35789999999999999999999998654  22112344444443221  33556666654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=4.1e-39  Score=295.75  Aligned_cols=277  Identities=19%  Similarity=0.183  Sum_probs=219.7

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP   88 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   88 (301)
                      ...++.+..+++.|+.+.+.+.+.    ..+++|+|+.|   +|..  ..++++.+.+++.+++.......|++..|..+
T Consensus        23 ~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~G~y~d~~~--~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~   96 (420)
T 4f4e_A           23 SLFSAVELAPRDPILGLNEAFNAD----TRPTKVNLGVGVYTNEDG--KIPLLRAVRDAEKARVEAGLPRGYLPIDGIAA   96 (420)
T ss_dssp             CTTTTCCCCCCCHHHHHHHHHHHC----CCSSCEECCCCSCCCTTS--CCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHH
T ss_pred             CHhhcCCcCCCChHHHHHHHHHhc----CCCCcEEeeeeeeECCCC--CccCcHHHHHHHHHHhccCCCCCCCCCCCcHH
Confidence            355677788999999998766442    24689999999   6652  24455899999999888655568999899999


Q ss_pred             HHHHHHHHHhhhCCCCCCCC--CEEEcCCHHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC
Q 022213           89 ARRAIADYLSRDLPYKLSAD--DVYVTLGCKQAVEVIL--SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER  164 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~--~i~~t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~  164 (301)
                      +|+++++++....+..++++  +|++|+|++++++.++  .+++++||+|++++|+|.++...++..|.+++.+++..++
T Consensus        97 lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  176 (420)
T 4f4e_A           97 YDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAK  176 (420)
T ss_dssp             HHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETT
T ss_pred             HHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccc
Confidence            99999999976444334677  8999999999999994  4667999999999999999999999999999999984445


Q ss_pred             CCCCCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCcccc-C
Q 022213          165 NWEVDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLF-G  239 (301)
Q Consensus       165 ~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~-~  239 (301)
                      ++.+|++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+|++|..+.+++. ...++..+ +
T Consensus       177 ~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~  256 (420)
T 4f4e_A          177 TNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA  256 (420)
T ss_dssp             TTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH
T ss_pred             cCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh
Confidence            67899999999987   4678889999999999999999999999999999999999999999998742 23333333 2


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH----HHHhhh-cccCCCccccccc
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID----SIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~q~~  299 (301)
                      ..+++|+++||||.|+++|+|+||+++...+     ++++.    .++... ....+++.+.|.+
T Consensus       257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (420)
T 4f4e_A          257 ANLNVFVSSSFSKSFSLYGERVGALSIITDS-----KDEAARVLSQLKRVIRTNYSNPPTHGGAI  316 (420)
T ss_dssp             TTCCEEEEEECTTTTTCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHH
T ss_pred             cCCCEEEEEeCCccCcCcCCCcEEEEEEcCC-----HHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence            3467999999999999999999999753321     23333    333332 2344567777654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=5.1e-39  Score=293.58  Aligned_cols=266  Identities=21%  Similarity=0.354  Sum_probs=225.1

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      ++++..+++.++.+.+.       ..++++|+|+.|+|+    +++++.+.+++.+++.......|++..|..++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~-------~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la   71 (410)
T 3e2y_A            3 KRIEGLDSNVWVEFTKL-------AADPSVVNLGQGFPD----ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALS   71 (410)
T ss_dssp             GGGTTCCCCHHHHTTTT-------TTSTTSEECSSCCCC----SCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHH
T ss_pred             hhhccCCccHHHHHHHH-------hcCCCeEEecCCCCC----CCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHH
Confidence            45566677777766541       235789999999964    6788999999999887555558998889999999999


Q ss_pred             HHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC---------CC
Q 022213           95 DYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP---------ER  164 (301)
Q Consensus        95 ~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~---------~~  164 (301)
                      +++.+.++..+++ ++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.+++.+         ..
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~  151 (410)
T 3e2y_A           72 CLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSS  151 (410)
T ss_dssp             HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGG
T ss_pred             HHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecccccccccccccc
Confidence            9999888877888 8999999999999999999999999999999999999999999999999998753         23


Q ss_pred             CCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCC
Q 022213          165 NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVP  243 (301)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~  243 (301)
                      ++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++..+.++..+.. .++
T Consensus       152 ~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  231 (410)
T 3e2y_A          152 DWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWER  231 (410)
T ss_dssp             GEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred             CCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCe
Confidence            5568999999999888999999999999999999999999999999999999999999999998766666666543 367


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++++.|+||.++++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       232 ~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  280 (410)
T 3e2y_A          232 TITIGSAGKTFSVTGWKLGWSIGPA--------HLIKHLQTVQQNSFYTCATPLQAA  280 (410)
T ss_dssp             EEEEEEHHHHSSCGGGCCEEEECCH--------HHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             EEEEecchhhcCCCCceEEEEEECH--------HHHHHHHHHHHhhccCCChHHHHH
Confidence            8999999999999999999999743        47777776643 244567777764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=3.9e-38  Score=285.92  Aligned_cols=267  Identities=25%  Similarity=0.411  Sum_probs=224.5

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+.+..+++.++++.....+      .+++|+|+.|+|.    +++++.+.+++.+.++... ..|++..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~l   72 (389)
T 1gd9_A            4 SDRLELVSASEIRKLFDIAAG------MKDVISLGIGEPD----FDTPQHIKEYAKEALDKGL-THYGPNIGLLELREAI   72 (389)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHT------CSSCEECCCCSCS----SCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHH
T ss_pred             hhHhHhCChhHHHHHHHHHhh------hcCeEecCCCCCC----CCCCHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHH
Confidence            556777888888888774432      2579999999864    5567889999998887543 4698878999999999


Q ss_pred             HHHHhhhCCCCCCCCC-EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~-i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++++.+.+|..+++++ |++|+|+++++..++++++++||+|++++|+|+++...++..|.+++.++++.++++.+|++.
T Consensus        73 a~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  152 (389)
T 1gd9_A           73 AEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDE  152 (389)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHH
T ss_pred             HHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHH
Confidence            9999887777778889 999999999999999999999999999999999999999999999999998654567789999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~S  251 (301)
                      +++.++++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++..+.++..+.. .+++++++|+|
T Consensus       153 l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  232 (389)
T 1gd9_A          153 LKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFS  232 (389)
T ss_dssp             HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEST
T ss_pred             HHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecCh
Confidence            99999888889999999999999999999999999999999999999999999887654455555543 45689999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       233 K~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  273 (389)
T 1gd9_A          233 KTFAMTGWRLGFVAAPS--------WIIERMVKFQMYNATCPVTFIQYA  273 (389)
T ss_dssp             TTTTCGGGCCEEEECCH--------HHHHHHHHHHTTTTCSCCHHHHHH
T ss_pred             hhcCCcccceEEEEECH--------HHHHHHHHHHhhhccCCCHHHHHH
Confidence            99999999999999842        47777776644 234567777754

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=1.8e-38  Score=288.70  Aligned_cols=269  Identities=21%  Similarity=0.346  Sum_probs=222.5

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .+.+..++..+..+.+ ..+.+...+++++|+|+.|+|.    ++.++.+.+++.+.+.  ....|++..|..++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~--~~~~y~~~~g~~~lr~~la   76 (396)
T 3jtx_A            4 TLLKQLKPYPFARLHE-AMQGISAPEGMEAVPLHIGEPK----HPTPKVITDALTASLH--ELEKYPLTAGLPELRQACA   76 (396)
T ss_dssp             HHHHHCCSCHHHHHHH-HTTTCCCCTTCCCEECSCCSCC----SCCCHHHHHHHHHTGG--GGGSCCCTTCCHHHHHHHH
T ss_pred             hhhccCCCChHHHHHH-HHHhhhhccCCCeEEeCCcCCC----CCCCHHHHHHHHHHhh--hccCCCCCCCcHHHHHHHH
Confidence            3556677777777765 3444444568899999999963    6678899999988775  3457998889999999999


Q ss_pred             HHHhhhCCCC-CCCC-CEEEcCCHHHHHHHHHHHhcCCC-----CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213           95 DYLSRDLPYK-LSAD-DVYVTLGCKQAVEVILSVLARPG-----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus        95 ~~l~~~~~~~-~~~~-~i~~t~g~~~al~~~~~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      +++.+.++.. ++++ +|++|+|++++++.++++++++|     |+|+++.|+|.++...++..|.+++.+++ .++++.
T Consensus        77 ~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~  155 (396)
T 3jtx_A           77 NWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFN  155 (396)
T ss_dssp             HHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCC
T ss_pred             HHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCc
Confidence            9999888876 7788 99999999999999999999997     79999999999999999999999999998 456777


Q ss_pred             CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc----cC-CCC
Q 022213          168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL----FG-SIV  242 (301)
Q Consensus       168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~----~~-~~~  242 (301)
                      +|++.++++++++++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++..+.+...    +. ..+
T Consensus       156 ~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
T 3jtx_A          156 PDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ  235 (396)
T ss_dssp             CCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCT
T ss_pred             cCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccC
Confidence            8999999988888999999999999999999999999999999999999999999999887633332211    11 246


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                      +++++.|+||.|+++|+|+||++++        ++++++++..... ..+++.+.|.+
T Consensus       236 ~~i~~~s~sK~~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a  285 (396)
T 3jtx_A          236 KLLMFTSLSKRSNVPGLRSGFVAGD--------AELLKNFLLYRTYHGSAMSIPVQRA  285 (396)
T ss_dssp             TEEEEEESTTTSSCGGGCCEEEEEC--------HHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             cEEEEeccccccCCcccceEEEEeC--------HHHHHHHHHHHhhcccCCCHHHHHH
Confidence            7899999999999999999999873        2577887776542 34667777765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-39  Score=296.91  Aligned_cols=248  Identities=25%  Similarity=0.398  Sum_probs=211.2

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .++++|+|+.|.|+    +++|+.+.+++.++++.....+|++..|..+||+++++++.+.+|.++++++|++|+|++++
T Consensus        55 ~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~a  130 (447)
T 3b46_A           55 QGRELINLGQGFFS----YSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEG  130 (447)
T ss_dssp             TTSCCEECCCCSCS----SCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHH
T ss_pred             cCCCeEEccCCCCC----CCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence            36789999999864    56788999999988864234579988899999999999998888877888999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC----------CCCCCHHHHHhhcccCccEEEEcCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER----------NWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      ++.++++++++||+|++++|+|.++...++..|.+++.+++.+++          +|.+|+++|++.++++++++++++|
T Consensus       131 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p  210 (447)
T 3b46_A          131 ILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTP  210 (447)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESS
T ss_pred             HHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCC
Confidence            999999999999999999999999999999999999999886543          5779999999999888899999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc--CCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--GSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      +||||.+++.+++++|+++|++||+++|+||+|..+.|++ ...++..+  +..++++++.|+||.|+++|+|+||+++.
T Consensus       211 ~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~  289 (447)
T 3b46_A          211 HNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSL  289 (447)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECS
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeC
Confidence            9999999999999999999999999999999999999876 33344444  12357899999999999999999999973


Q ss_pred             CCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +       +++++.++.... ...+++++.|.+
T Consensus       290 ~-------~~l~~~l~~~~~~~~~~~~~~~~~a  315 (447)
T 3b46_A          290 N-------AELLSYAAKAHTRICFASPSPLQEA  315 (447)
T ss_dssp             C-------HHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             C-------HHHHHHHHHHHhhccCCCChHHHHH
Confidence            2       247777766533 344567777765

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=3.1e-38  Score=286.90  Aligned_cols=263  Identities=19%  Similarity=0.335  Sum_probs=213.6

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      +.+..+++.++.+.+.... + ..+++++|+|+.|+|.    +++++.+.+++.+++.... ..|++..|..++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-~-~~~g~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~   79 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARR-A-EEAGRRIIHMEVGQPG----TGAPRGAVEALAKSLETDA-LGYTVALGLPALRQRIAR   79 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHH-H-HHTTCCCEECCCSSCS----SCSCHHHHHHHHHHHC-----------CCHHHHHHHHH
T ss_pred             hHhhcCcchHHHHHHHHHH-H-HhcCCCeEEccCCCCC----CCCCHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHH
Confidence            4566677788887764432 2 2247899999999864    6678889999998886533 479888899999999999


Q ss_pred             HHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh
Q 022213           96 YLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      ++.+.++..+++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++.+.++.+|++.+++
T Consensus        80 ~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (391)
T 3h14_A           80 LYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG  159 (391)
T ss_dssp             HHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred             HHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh
Confidence            99988888889999999999999999999999999999999999999999999999999999998776677899999987


Q ss_pred             hcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213          176 LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL  255 (301)
Q Consensus       176 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~  255 (301)
                      .   +++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++.. .++..+  .+++++++|+||.++
T Consensus       160 ~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~--~~~~i~~~s~sK~~g  233 (391)
T 3h14_A          160 L---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALEL--TDECYVINSFSKYFS  233 (391)
T ss_dssp             S---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGGT--CSSSEEEEESSSTTC
T ss_pred             c---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhhc--CCCEEEEEechhccC
Confidence            6   6899999999999999999999999999999999999999999999887643 233232  457899999999999


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       234 ~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  270 (391)
T 3h14_A          234 MTGWRVGWMVVPE--------DQVRVVERIAQNMFICAPHASQVA  270 (391)
T ss_dssp             CTTSCCEEEECCG--------GGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             CccceeEEEEeCH--------HHHHHHHHHHhhhccCCCHHHHHH
Confidence            9999999999854        36666666543 344567777654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=2.7e-38  Score=296.50  Aligned_cols=271  Identities=19%  Similarity=0.310  Sum_probs=219.6

Q ss_pred             HHHHHHHHHhhcccCCCC----CeeeccCCCCCCCCCCC-------------------------ChHHHHHHHHHHHhcC
Q 022213           25 VKTSLASIIDSVNKNDPR----PVVPLGYGDPTAFPCFR-------------------------TAVEAEDAIVDAVRSG   75 (301)
Q Consensus        25 i~~~~~~~~~~~~~~~~~----~~i~l~~g~p~~~p~~~-------------------------~~~~~~~~~~~~~~~~   75 (301)
                      +...++.+.+.+.+..+.    .+|++++|+|..++..+                         .|..+.+++.+.+...
T Consensus        43 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~~~~~~~~p~~~~~~a~~~l~~~  122 (500)
T 3tcm_A           43 IVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMI  122 (500)
T ss_dssp             HHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGCTTHHHHSCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccCCCCcccCCHHHHHHHHHHHHcC
Confidence            333344444443332343    89999999985443321                         3445666666666652


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHhc
Q 022213           76 ---KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGIAQRK  151 (301)
Q Consensus        76 ---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~  151 (301)
                         ....|++..|..++|+++++++.+.+|..+++++|++|+|+++++..++++++ ++||.|+++.|+|..+...++..
T Consensus       123 ~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~  202 (500)
T 3tcm_A          123 PGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH  202 (500)
T ss_dssp             TTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT
T ss_pred             CCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc
Confidence               45689999999999999999999888888899999999999999999999998 89999999999999999999999


Q ss_pred             CceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc
Q 022213          152 QVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL  225 (301)
Q Consensus       152 g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~  225 (301)
                      |.+++.++++.+.+|.+|++.|++.+++      +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+
T Consensus       203 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~  282 (500)
T 3tcm_A          203 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQEN  282 (500)
T ss_dssp             TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred             CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence            9999999998877889999999998876      6788999999999999999999999999999999999999999999


Q ss_pred             ccCC-CCCCCccc----c---CCCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccc
Q 022213          226 TFGS-IPYTPMGL----F---GSIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFI  296 (301)
Q Consensus       226 ~~~~-~~~~~~~~----~---~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (301)
                      .|++ ..+.++..    +   ....++|+++||||+| |++|+|+||+++.+.+     ++++++++.......+++.+.
T Consensus       283 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~  357 (500)
T 3tcm_A          283 IYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS-----APVREQIYKIASVNLCSNITG  357 (500)
T ss_dssp             BCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCC-----TTHHHHHHHHHHTTCCCCHHH
T ss_pred             ccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCC-----HHHHHHHHHHHhcccCCCHHH
Confidence            9864 34444432    2   2334689999999998 8999999999985321     247788877766667888888


Q ss_pred             cccC
Q 022213          297 QVCE  300 (301)
Q Consensus       297 q~~~  300 (301)
                      |.++
T Consensus       358 q~~~  361 (500)
T 3tcm_A          358 QILA  361 (500)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.7e-38  Score=289.38  Aligned_cols=272  Identities=19%  Similarity=0.322  Sum_probs=210.8

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      ..+.+..+++.+..+..... .+ ..+++++|+|+.|+|.    ++.++.+.+++.+++.......|++..|..++|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~idl~~g~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~i   84 (412)
T 2x5d_A           11 FARIDRLPPYVFNITAELKM-AA-RRRGEDIIDLSMGNPD----GPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAI   84 (412)
T ss_dssp             ----------CHHHHHHHHH-HH-HHTTCCCEECSSCCCC----SCCCHHHHHHHHHTC---------CTTCCHHHHHHH
T ss_pred             hHHHhhcCchHHHHHHHHHH-HH-hhcCCCEEecCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Confidence            34455556666666554332 22 2247789999999863    556788999998877654345798778999999999


Q ss_pred             HHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++++.+.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++++.++++.+|++.
T Consensus        85 a~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  164 (412)
T 2x5d_A           85 SHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELER  164 (412)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHH
Confidence            99998877777777 79999999999999999999999999999999999999999999999999998655466678999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~S  251 (301)
                      +++.++++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++..+.++..++. .+++++++|+|
T Consensus       165 l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s  244 (412)
T 2x5d_A          165 AIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLS  244 (412)
T ss_dssp             HHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC
T ss_pred             HHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCc
Confidence            99999888899999999999999999999999999999999999999999999987655556655543 35789999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||++++.        +++++++.... ...+++.++|.+
T Consensus       245 K~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  285 (412)
T 2x5d_A          245 KSYNMAGWRIGFMVGNP--------ELVSALARIKSYHDYGTFTPLQVA  285 (412)
T ss_dssp             -CCSCTTSCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             cccCCcccceEEEEcCH--------HHHHHHHHHHhhhccCCCHHHHHH
Confidence            99999999999999832        47777776543 244667777765

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=3.5e-38  Score=286.16  Aligned_cols=271  Identities=23%  Similarity=0.351  Sum_probs=224.4

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+.+..+++.++++.....+..  .+++++|+|+.|+|.    ++.++.+.+++.+.++.. ...|++..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~l   76 (388)
T 1j32_A            4 AARVESVSPSMTLIIDAKAKAMK--AEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAI   76 (388)
T ss_dssp             CHHHHTSCCCSSTTTHHHHHHHH--TTTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHH
T ss_pred             hhHhHhCCccHHHHHHHHHHHHH--hcCCCEEECCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence            45566677777776665443321  247789999999863    556788999998888653 34798888999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++++.+.++..+++++|++|+|+++++..++++++++||+|++++|+|.++...++..|.+++.++++.+.++.+|++.+
T Consensus        77 a~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  156 (388)
T 1j32_A           77 AQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQI  156 (388)
T ss_dssp             HHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHH
T ss_pred             HHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHH
Confidence            99998877777788999999999999999999999999999999999999999999999999999886545677999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSIS  251 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~S  251 (301)
                      ++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++..+.++..+..  .++++++.|+|
T Consensus       157 ~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  236 (388)
T 1j32_A          157 RQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFA  236 (388)
T ss_dssp             HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEEST
T ss_pred             HHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeech
Confidence            9999888899999999999999999999999999999999999999999999887655555555543  34689999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       237 K~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  277 (388)
T 1j32_A          237 KTYAMTGWRVGFLAGPV--------PLVKAATKIQGHSTSNVCTFAQYG  277 (388)
T ss_dssp             TTTTCTTTCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHH
T ss_pred             hccCCcccceEEEEeCH--------HHHHHHHHHHhhcccCCCHHHHHH
Confidence            99999999999999743        47777766543 234566677654

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=8.1e-38  Score=284.25  Aligned_cols=273  Identities=25%  Similarity=0.366  Sum_probs=225.8

Q ss_pred             cccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Q 022213           11 FEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPAR   90 (301)
Q Consensus        11 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr   90 (301)
                      +-...+.+..+++.++.+.....+...  .++++|+|+.|+|.    ++.++.+.+++.+.+.... ..|++..|..++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr   84 (389)
T 1o4s_A           12 HMVSRRISEIPISKTMELDAKAKALIK--KGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELR   84 (389)
T ss_dssp             --CCHHHHHSCCCSSHHHHHHHHHHHH--TTCCCEECCCSSCS----SCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHH
T ss_pred             HHHHHHHhhcCccHHHHHHHHHHHHHh--cCCCEEEccCCCCC----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHH
Confidence            345677888888989888765543221  36789999999863    5567889999998886533 4788878999999


Q ss_pred             HHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           91 RAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        91 ~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      +++++++.+.+|..+++++|++|+|+++++..++++++++||+|++++|+|.++...++..|.+++.++++.++++.+|+
T Consensus        85 ~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  164 (389)
T 1o4s_A           85 EGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSL  164 (389)
T ss_dssp             HHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCH
T ss_pred             HHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCH
Confidence            99999998877777788999999999999999999999999999999999999999999999999999986545678999


Q ss_pred             HHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEec
Q 022213          171 DAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGS  249 (301)
Q Consensus       171 ~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s  249 (301)
                      +++++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++ ...++..++. .+++++++|
T Consensus       165 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s  243 (389)
T 1o4s_A          165 EEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYING  243 (389)
T ss_dssp             HHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEE
T ss_pred             HHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEee
Confidence            99999998888999999999999999999999999999999999999999999988865 3344444433 456899999


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +||.++++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       244 ~sK~~~~~G~r~G~l~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  286 (389)
T 1o4s_A          244 FSKSHSMTGWRVGYLISSE--------KVATAVSKIQSHTTSCINTVAQYA  286 (389)
T ss_dssp             STTTTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTCSCCHHHHHH
T ss_pred             chhhcCCcccceEEEEeCH--------HHHHHHHHHhhhcccCCCHHHHHH
Confidence            9999999999999999843        47777766543 234566676654

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=3e-38  Score=287.89  Aligned_cols=278  Identities=14%  Similarity=0.128  Sum_probs=213.3

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      +...+++.++.+.+.....    ..+.+|+|+.|.| +..+..+..+.+.+++.+.........|.+..|..++|+++++
T Consensus         7 ~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   82 (401)
T 7aat_A            7 VEMGPPDPILGVTEAFKRD----TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAE   82 (401)
T ss_dssp             CCCCCCCHHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHhhC----CCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHH
Confidence            3455778888887655432    3466999999997 4332233445788888877664445589988899999999999


Q ss_pred             HHhhhCCCCCCCCCEEE--cCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           96 YLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLA---RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      ++.+.++..+++++|++  |+|++++++.+++++.   ++||+|++++|+|.++...++..|.+++.+++...+++.+|+
T Consensus        83 ~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  162 (401)
T 7aat_A           83 LALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF  162 (401)
T ss_dssp             HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred             HhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCH
Confidence            99887776677999987  9999999999887765   899999999999999999999999999999986555678999


Q ss_pred             HHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCcccc-CCCCCE
Q 022213          171 DAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLF-GSIVPV  244 (301)
Q Consensus       171 ~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~-~~~~~v  244 (301)
                      +.+++.+.   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++.  ...++..+ ....++
T Consensus       163 ~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
T 7aat_A          163 TGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV  242 (401)
T ss_dssp             HHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcE
Confidence            97776654   4678889999999999999999999999999999999999999999988643  12233222 334678


Q ss_pred             EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |+++||||.|+++|+|+||++++..+... ...++..++.... ...+++.+.|.+
T Consensus       243 i~~~S~sK~~~~~G~RiG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (401)
T 7aat_A          243 VLSQSYAKNMGLYGERAGAFTVICRDAEE-AKRVESQLKILIRPMYSNPPMNGARI  297 (401)
T ss_dssp             EEEEECTTTSCCGGGCEEEEEEECSSHHH-HHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             EEEecCCcccccccCceEEEEEEeCCHHH-HHHHHHHHHHHHHhccCCCChHHHHH
Confidence            99999999999999999999874422100 0114455554432 344555555543

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=295.05  Aligned_cols=253  Identities=22%  Similarity=0.379  Sum_probs=200.7

Q ss_pred             CeeeccCCCCCCCCCCC---------------------ChHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHHHHh
Q 022213           43 PVVPLGYGDPTAFPCFR---------------------TAVEAEDAIVDAVRSG---KFNCYATNSGIPPARRAIADYLS   98 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~---------------------~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~   98 (301)
                      .+|++++|+|..+...+                     .|..+.+++.++++..   ....|++..|..++|+++++++.
T Consensus        64 ~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~  143 (498)
T 3ihj_A           64 EVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYIT  143 (498)
T ss_dssp             SCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHH
T ss_pred             hhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            89999999996432111                     2445556666666642   34689999999999999999999


Q ss_pred             hhC-CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           99 RDL-PYKLSADDVYVTLGCKQAVEVILSVLARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        99 ~~~-~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      +.+ |+.+++++|++|+|+++++..++++++++||    .|+++.|+|..|...++..|.+++.++++.+++|.+|+++|
T Consensus       144 ~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l  223 (498)
T 3ihj_A          144 RRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNEL  223 (498)
T ss_dssp             HHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHH
T ss_pred             HhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHH
Confidence            877 4888999999999999999999999999875    99999999999999999999999999998877899999999


Q ss_pred             Hhhccc-----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccC--------
Q 022213          174 EALADK-----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFG--------  239 (301)
Q Consensus       174 ~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~--------  239 (301)
                      ++.+++     +++++++++|+||||.+++.+++++|+++|++|++++|+||+|..+.|++. .+.++..+.        
T Consensus       224 e~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~  303 (498)
T 3ihj_A          224 RRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYS  303 (498)
T ss_dssp             HHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHH
T ss_pred             HHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhccccc
Confidence            998876     578899999999999999999999999999999999999999999999754 555555432        


Q ss_pred             CCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          240 SIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      ...++|+++||||.| |++|+|+||+++.+.+     +++++.+........+++.+.|.++
T Consensus       304 ~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~q~a~  360 (498)
T 3ihj_A          304 SNVELASFHSTSKGYMGECGYRGGYMEVINLH-----PEIKGQLVKLLSVRLCPPVSGQAAM  360 (498)
T ss_dssp             TTCCEEEEEESSSSTTCCSSSCCEEEEEESCC-----HHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             CceeEEEEeccccccccCcccceEEEEEecCC-----HHHHHHHHHHHhccCCCCHHHHHHH
Confidence            234689999999999 7899999999863321     4688888877666678888888764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=1.2e-37  Score=286.47  Aligned_cols=268  Identities=20%  Similarity=0.231  Sum_probs=216.2

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHH---H---------HHHHHHHHhcCC
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVE---A---------EDAIVDAVRSGK   76 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~---~---------~~~~~~~~~~~~   76 (301)
                      |....+++.+..+++.++.+.+....     .++++|+|+.|.|+.. .++....   +         .+...+      
T Consensus         3 ~~~~~s~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~p~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~------   70 (425)
T 2r2n_A            3 YARFITAASAARNPSPIRTMTDILSR-----GPKSMISLAGGLPNPN-MFPFKTAVITVENGKTIQFGEEMMKR------   70 (425)
T ss_dssp             GGGGSCHHHHTCCCCSGGGHHHHHHH-----SCTTCEECCCCCCCGG-GCSEEEEEEEETTSCCEEECHHHHHH------
T ss_pred             hhHHHHHHHhcCCCchHHHHHHHhhc-----CCCCeEEcCCcCCCch-hCCHHHHHHHHhhcccccccccchhh------
Confidence            55667889999999999998875432     1367999999998631 1221000   0         111111      


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-------CCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH
Q 022213           77 FNCYATNSGIPPARRAIADYLSRDLPYKLS-------ADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ  149 (301)
Q Consensus        77 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~  149 (301)
                      ..+|++..|.++||+++++++.+.++...+       +++|++|+|++++++.++++++++||+|++++|+|.++...++
T Consensus        71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~  150 (425)
T 2r2n_A           71 ALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH  150 (425)
T ss_dssp             HTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG
T ss_pred             hcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH
Confidence            137999999999999999999887776653       3799999999999999999999999999999999999999999


Q ss_pred             hcCceEEEeecCCCCCCCCCHHHHHhhcc------------cCccEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCeE
Q 022213          150 RKQVEVRHFDLLPERNWEVDLDAVEALAD------------KNTAAMVI-INPGNPCGNVFTYHHLQEIAEMARKLRVMV  216 (301)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~~~~~~~~i  216 (301)
                      ..|.+++.++++.   .++|++.|++.++            .+++++++ ++||||||.+++.+++++|+++|++||+++
T Consensus       151 ~~g~~~~~v~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l  227 (425)
T 2r2n_A          151 PLGCNIINVASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI  227 (425)
T ss_dssp             GGTCEEEEECEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HcCCEEEEeCcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9999999998753   2489999999886            35677765 689999999999999999999999999999


Q ss_pred             EEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccc
Q 022213          217 VADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTF  295 (301)
Q Consensus       217 i~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  295 (301)
                      |+||+|.++.|++..+.++..++..+++|+++||||.++ +|+|+||+++++        +++++++.... ...+++.+
T Consensus       228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~--------~l~~~l~~~~~~~~~~~~~~  298 (425)
T 2r2n_A          228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPK--------PLIERVILHIQVSTLHPSTF  298 (425)
T ss_dssp             EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEH--------HHHHHHHHHHHTTTCSSCHH
T ss_pred             EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCH--------HHHHHHHHHHHHhcCCCCHH
Confidence            999999999987766666766766678999999999998 999999999854        47777777644 34567888


Q ss_pred             ccccC
Q 022213          296 IQVCE  300 (301)
Q Consensus       296 ~q~~~  300 (301)
                      .|.++
T Consensus       299 ~q~a~  303 (425)
T 2r2n_A          299 NQLMI  303 (425)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88653

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=1.1e-37  Score=283.68  Aligned_cols=246  Identities=18%  Similarity=0.159  Sum_probs=203.1

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHH-HHhcCCCCCCCCCCCCHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVD-AVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      +...+++.++.+.+.+...    ..+++|+|+.|   +|..  ..+.++.+.+++.+ ++.......|++..|..++|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~y~d~~~--~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~   78 (397)
T 3fsl_A            5 VDAYAGDPILTLMERFKED----PRSDKVNLSIGLYYNEDG--IIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHA   78 (397)
T ss_dssp             CCCCCCCHHHHHHHHHHTC----CCSCCEECSSCCCCCTTS--CCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHH
T ss_pred             CCCCCCCchhhHHHHHhcC----CCCCeEEEeeeEEECCCC--CccCcHHHHHHHHhhccCccccccCCCCCchHHHHHH
Confidence            4567788888887755432    35789999999   5542  24555899999998 8876455689988899999999


Q ss_pred             HHHHHhhhCCCCCCCC--CEEEcCCHHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           93 IADYLSRDLPYKLSAD--DVYVTLGCKQAVEVIL--SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~--~i~~t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      +++++....+..++++  +|++|+|++++++.++  .+++++||+|+++.|+|.++...++..|.+++.+++..++++.+
T Consensus        79 la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  158 (397)
T 3fsl_A           79 IAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV  158 (397)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEE
T ss_pred             HHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcC
Confidence            9999976444334678  8999999999999995  45578999999999999999999999999999998854456789


Q ss_pred             CHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCcccc-CCCCC
Q 022213          169 DLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLF-GSIVP  243 (301)
Q Consensus       169 ~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~-~~~~~  243 (301)
                      |++.+++.++   ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ ....++..+ +..++
T Consensus       159 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
T 3fsl_A          159 RFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLP  238 (397)
T ss_dssp             CHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCC
Confidence            9999999987   456788889999999999999999999999999999999999999998863 223333333 34567


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+++||||.++++|+|+||++++.
T Consensus       239 ~i~~~S~SK~~~~~G~riG~~~~~~  263 (397)
T 3fsl_A          239 ALVSNSFSKIFSLYGERVGGLSVMC  263 (397)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred             EEEEecccccccCcCCCeeEEEEec
Confidence            9999999999999999999998743

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.2e-37  Score=284.57  Aligned_cols=282  Identities=25%  Similarity=0.461  Sum_probs=222.2

Q ss_pred             cccccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCC
Q 022213            7 NKWGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI   86 (301)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~   86 (301)
                      .|..-+...+.+..+.+.++.+.  ..+.+.. .++++|+|+.|.|... .++.++.+.+++.+.+.... ..|++..|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~g~~~i~l~~~~~~~~-~~~~~~~v~~a~~~~~~~~~-~~y~~~~g~   80 (406)
T 1xi9_A            6 HHGSIRASKRALSVEYAIRDVVL--PARELEK-KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEGH-NYYGDSEGL   80 (406)
T ss_dssp             ---CCCCCHHHHTCCC---------CHHHHHH-TTCCCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTTC-CSCCCTTCC
T ss_pred             ccchhhHHHHHhcCChhHHHHHH--HHHHHHH-cCCCEEEecCCCCCcC-CCCCCHHHHHHHHHHHhcCC-CCCCCCCCc
Confidence            34666788888888888887776  3333322 3678999999997321 35667889999988886532 368887899


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      .++|+++++++.+.++.++++++|++|+|+++++..++++++++||+|++++|+|.++...++..|.+++.++++.++++
T Consensus        81 ~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  160 (406)
T 1xi9_A           81 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDW  160 (406)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTS
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCC
Confidence            99999999999987787888999999999999999999999999999999999999999999999999999998654567


Q ss_pred             CCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EE
Q 022213          167 EVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VI  245 (301)
Q Consensus       167 ~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi  245 (301)
                      .+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++ ...++..++ .++ +|
T Consensus       161 ~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i  238 (406)
T 1xi9_A          161 QPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVI  238 (406)
T ss_dssp             EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEE
T ss_pred             cCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEE
Confidence            789999999998888999999999999999999999999999999999999999999988843 344555554 456 89


Q ss_pred             EEecCcccCCCCcceeEEEE--eeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          246 TLGSISKRWLVPGWRFGWLV--TNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++|+||.++++|+|+||++  +++..    ..+++++++.......+++.+.|.+
T Consensus       239 ~~~s~sK~~~~~G~r~G~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~a  290 (406)
T 1xi9_A          239 VMNGLSKVYFATGWRLGYMYFVDPENK----LSEVREAIDRLARIRLCPNTPAQFA  290 (406)
T ss_dssp             EEEESTTTTCCGGGCCEEEEEECTTCT----THHHHHHHHHHHHHTCCSCSHHHHH
T ss_pred             EEeccccccCCCccEEEEEEEecCchh----HHHHHHHHHHHHHhhcCCCHHHHHH
Confidence            99999999999999999998  53210    0146777766543224567777654

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.5e-38  Score=283.80  Aligned_cols=246  Identities=20%  Similarity=0.288  Sum_probs=205.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      .++++|+|+.|+|.    ++.++.+.+++.++++......|++..|..++|+++++++.+.+|..++++ +|++|+|+++
T Consensus        23 ~g~~~idl~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~   98 (376)
T 2dou_A           23 RGVGLIDLSIGSTD----LPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE   98 (376)
T ss_dssp             TTCCCEECSSCCCC----CCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred             cCCCEEeccCCCCC----CCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence            46789999999863    556788999999888643345788766889999999999988777777776 9999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      +++.++++++++||+|+++.|+|.++...++..|.+++.+++  ++++.+|++.+++.++++++++++++|+||||.+++
T Consensus        99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~  176 (376)
T 2dou_A           99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVAD  176 (376)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCC
Confidence            999999999999999999999999999999999999999987  456778999998888777889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .+++++|+++|++||+++|+||+|..+.+++.....+...+..+++++++|+||.++++|+|+||++++.        ++
T Consensus       177 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~  248 (376)
T 2dou_A          177 WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSE--------EA  248 (376)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECH--------HH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCH--------HH
Confidence            9999999999999999999999999998865322223322334578999999999999999999998732        57


Q ss_pred             HHHHHhhhc-ccCCCccccccc
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++.... ...+++.+.|.+
T Consensus       249 ~~~l~~~~~~~~~~~~~~~~~a  270 (376)
T 2dou_A          249 LARLERVKGVIDFNQYAGVLRM  270 (376)
T ss_dssp             HHHHHHHHHHHCCCSCHHHHHH
T ss_pred             HHHHHHHHHhcccCCCHHHHHH
Confidence            777776544 233567777754

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.3e-37  Score=280.72  Aligned_cols=266  Identities=27%  Similarity=0.406  Sum_probs=219.5

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+.+..+++.+..+.+.. .      ..++|+|+.|.|.    ++.++.+.+++.++++.. ...|++..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~------~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~l   71 (411)
T 2o0r_A            4 VSRLRPYATTVFAEMSALA-T------RIGAVNLGQGFPD----EDGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAI   71 (411)
T ss_dssp             CGGGGGGSSCHHHHHHHHH-H------TTTCEESSCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHH
T ss_pred             hhHhHhcCccHHHHHHHHh-h------cCCeeeccCcCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence            4555666666666655422 2      3578999999863    556788999999988753 45798888999999999


Q ss_pred             HHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCC-CCCCCCHH
Q 022213           94 ADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE-RNWEVDLD  171 (301)
Q Consensus        94 a~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~  171 (301)
                      ++++.+.+|..++++ +|++|+|+++++..++++++++||+|+++.|+|.++...++..|.+++.++++.+ .++.+|++
T Consensus        72 a~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~  151 (411)
T 2o0r_A           72 AAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDAD  151 (411)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred             HHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHH
Confidence            999988777777888 9999999999999999999999999999999999999999999999999987543 34668999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecC
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSI  250 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~  250 (301)
                      .|++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++..+.++..++. .++++++.|+
T Consensus       152 ~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~  231 (411)
T 2o0r_A          152 ALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSA  231 (411)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             HHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeec
Confidence            999999888899999999999999999999999999999999999999999999887655556655543 4568999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++++|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       232 sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  273 (411)
T 2o0r_A          232 AKMFNCTGWKIGWACGPA--------ELIAGVRAAKQYLSYVGGAPFQPA  273 (411)
T ss_dssp             HHHTTCTTTCEEEEECCH--------HHHHHHHHHHHHHTSCCCTTHHHH
T ss_pred             hhhcCCccceEEEEeeCH--------HHHHHHHHHHhhccCCCChHHHHH
Confidence            999999999999999742        47777766543 233556676654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=6.6e-37  Score=277.69  Aligned_cols=244  Identities=24%  Similarity=0.379  Sum_probs=207.8

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAV  120 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al  120 (301)
                      .++|+|+.|.|.    +++++.+.+++.++++.. ...|++..|..++|+++++++.+.+|..++++ +|++|+|+++++
T Consensus        30 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  104 (386)
T 1u08_A           30 HQAINLSQGFPD----FDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  104 (386)
T ss_dssp             TTCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             CCeEEecCCCCC----CCCCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence            578999999863    556789999999988753 34798878999999999999988777777888 999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      +.++++++++||+|+++.|+|+++...++..|.+++.++++.+ ++.+|++++++.++++++++++++|+||||.+++.+
T Consensus       105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~  183 (386)
T 1u08_A          105 YAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQA  183 (386)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHH
Confidence            9999999999999999999999999999999999999998543 567999999999988889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|+++|++||+++|+|++|..+.+++....++..+. ..++++++.|+||.++++|+|+||+++++        +++
T Consensus       184 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~  255 (386)
T 1u08_A          184 DFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--------PIS  255 (386)
T ss_dssp             HHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--------HHH
T ss_pred             HHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH--------HHH
Confidence            999999999999999999999999988765555554442 23578999999999999999999999843        477


Q ss_pred             HHHHhhhc-ccCCCccccccc
Q 022213          280 DSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++++.... ...+++.+.|.+
T Consensus       256 ~~l~~~~~~~~~~~~~~~~~a  276 (386)
T 1u08_A          256 AEIRKVHQYLTFSVNTPAQLA  276 (386)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHH
T ss_pred             HHHHHHHHhhccCCChHHHHH
Confidence            77766543 234566666654

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=9.5e-38  Score=285.29  Aligned_cols=268  Identities=21%  Similarity=0.313  Sum_probs=213.8

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      .++....+++.+..+.+....    ..+.++|+|+.|+|.    ++.++.+.+++.++++......|++..|..++|+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~----~~g~~~idl~~g~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i   94 (404)
T 2o1b_A           23 SNKLANIPDSYFGKTMGRKIE----HGPLPLINMAVGIPD----GPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAI   94 (404)
T ss_dssp             CHHHHTSCCCTTC-------C----CCSSCCEECCCCSCS----SCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHH
T ss_pred             hhHhhhCCchHHHHHHHHHHh----cCCCCEEecCCcCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence            445555666666665542211    235679999999964    556788999998887543234688877999999999


Q ss_pred             HHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++++.+.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++. +++.+|++.
T Consensus        95 a~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~  173 (404)
T 2o1b_A           95 VDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSK  173 (404)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGG
T ss_pred             HHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHH
Confidence            99998877777776 7999999999999999999999999999999999999999999999999999865 566789999


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~S  251 (301)
                      |++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++ .+.++..+. ..+++++++|+|
T Consensus       174 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~s  252 (404)
T 2o1b_A          174 VDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLS  252 (404)
T ss_dssp             SCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEEST
T ss_pred             HHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecc
Confidence            988887678899999999999999999999999999999999999999999998865 333444443 224689999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||++++        ++++++++.... ...+++.+.|.+
T Consensus       253 K~~g~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a  293 (404)
T 2o1b_A          253 KGYNMSGFRVGFAVGN--------KDMIQALKKYQTHTNAGMFGALQDA  293 (404)
T ss_dssp             TTTTCGGGCCEEEEEC--------HHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             hhccCchhheEeEecC--------HHHHHHHHHHHhhccCCCCHHHHHH
Confidence            9999999999999873        257777776543 234677777765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.6e-37  Score=286.14  Aligned_cols=244  Identities=20%  Similarity=0.234  Sum_probs=207.4

Q ss_pred             hcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHH
Q 022213           18 KAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL   97 (301)
Q Consensus        18 ~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l   97 (301)
                      ...+++.++.+...... +...+++++|+|+.|+|.    +++++.+.+++.+++.......|++..|..++|+++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~   95 (437)
T 3g0t_A           21 KDLGMASIRDLVALVTN-LEKATGTKFCRMEMGVPG----LPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFA   95 (437)
T ss_dssp             SCGGGCCHHHHHHHHHH-HHHHHTCCCEECCCCSCC----SCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHH-HHHhcCCCEEeccCcCCC----CCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHH
Confidence            34556778877654432 223347899999999963    6778999999998887544357999889999999999999


Q ss_pred             hhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc--CCCC--EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           98 SRDLPYKLSADDVYVTLGCKQAVEVILSVLA--RPGA--NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        98 ~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      .+.++..+++++|++|+|++++++.++++++  ++||  +|+++.|+|.++...++..|.+++.++++ ++++.+|++.+
T Consensus        96 ~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l  174 (437)
T 3g0t_A           96 KLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKL  174 (437)
T ss_dssp             HHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHH
T ss_pred             HHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHH
Confidence            9888888889999999999999999999999  9999  99999999999999999999999999986 45677899999


Q ss_pred             Hhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC----Cc-cccCC-CCCEEE
Q 022213          174 EALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT----PM-GLFGS-IVPVIT  246 (301)
Q Consensus       174 ~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~----~~-~~~~~-~~~vi~  246 (301)
                      ++.+ +.+++++++++|+||||.+++.+++++|+++|++||+++|+|++|+.+.+++....    ++ ..+.. .+++++
T Consensus       175 ~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (437)
T 3g0t_A          175 ESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYIL  254 (437)
T ss_dssp             HHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEE
T ss_pred             HHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEE
Confidence            9999 67889999999999999999999999999999999999999999999888632211    11 33433 567899


Q ss_pred             EecCcccCCCCcceeEEEEee
Q 022213          247 LGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ++|+||.++++|+|+||++++
T Consensus       255 ~~s~sK~~~~~G~r~G~~~~~  275 (437)
T 3g0t_A          255 ALSSSKAFSYAGQRIGVLMIS  275 (437)
T ss_dssp             EEESTTTTSCGGGCCEEEEEC
T ss_pred             EEcCccCCCCccceeEEEEEC
Confidence            999999999999999999985

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=5.6e-37  Score=279.64  Aligned_cols=247  Identities=21%  Similarity=0.282  Sum_probs=211.6

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVE  121 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~  121 (301)
                      .+|+|+.|+|.   .+++++.+.+++.+++.......|++..|..++++++++++.+.++..+++ ++|++|+|+++++.
T Consensus        40 ~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~  116 (407)
T 3nra_A           40 RPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF  116 (407)
T ss_dssp             CCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             ceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence            48999999976   266778899999988875434468888899999999999999888877766 79999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC----CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP----ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  197 (301)
                      .++++++++||+|+++.|+|.++...++..|.+++.+++..    ++++.+|++.+++.++++++++++++|+||||.++
T Consensus       117 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~  196 (407)
T 3nra_A          117 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVY  196 (407)
T ss_dssp             HHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCC
T ss_pred             HHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCccc
Confidence            99999999999999999999999999999999999999843    35677999999999988899999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC--CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG--SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~  275 (301)
                      +.+++++|+++|++||+++|+|++|..+.+++..+.++..++  ..++++++.|+||.++++|+|+||++++        
T Consensus       197 ~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------  268 (407)
T 3nra_A          197 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS--------  268 (407)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC--------
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC--------
Confidence            999999999999999999999999999999877666666654  3457899999999999999999999973        


Q ss_pred             hhHHHHHHhhhc-ccCCCcccccccC
Q 022213          276 SGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       276 ~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++++++++.... ...+++.+.|.++
T Consensus       269 ~~~~~~l~~~~~~~~~~~~~~~~~a~  294 (407)
T 3nra_A          269 RAIIARMEKLQAIVSLRAAGYSQAVL  294 (407)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHGGG
T ss_pred             HHHHHHHHHHHhhhccCCChHHHHHH
Confidence            257777776644 3345566777653

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=1.8e-37  Score=284.41  Aligned_cols=283  Identities=16%  Similarity=0.140  Sum_probs=217.7

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP   87 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~   87 (301)
                      |....+.+.....++.++.+.+...+...+..+.++|+|+.|+|. ..+.+++++.+.+++.+.... ....|++..|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~~~~g~~   83 (418)
T 3rq1_A            5 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVGYAPIAGIP   83 (418)
T ss_dssp             CCCSCTTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHSCCCTTCCH
T ss_pred             hhhhHhhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCCCCCCCChH
Confidence            444456667778888899887766554333345689999999871 123577888888887654322 233799888999


Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      +||+++++++...++.. .+++|++|+|+++++..++++++++||+|+++.|+|.+|...++..|.+++.+++..++ +.
T Consensus        84 ~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~  161 (418)
T 3rq1_A           84 DFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NN  161 (418)
T ss_dssp             HHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SS
T ss_pred             HHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CC
Confidence            99999999997654322 23399999999999999999999999999999999999999999999999999985544 67


Q ss_pred             CCHHHHHhhccc----Ccc-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCeEEEccCCcccccCCCCCCCc
Q 022213          168 VDLDAVEALADK----NTA-AMVIINP-GNPCGNVFTYHHLQEIAEMAR------KLRVMVVADEVYGHLTFGSIPYTPM  235 (301)
Q Consensus       168 ~~~~~l~~~~~~----~~~-~v~l~~p-~nptG~~~~~~~l~~i~~~~~------~~~~~ii~D~~y~~~~~~~~~~~~~  235 (301)
                      +|++.+++.+++    +++ ++++++| |||||.+++.+++++|+++|+      +||+++|+||+|.++.+++....++
T Consensus       162 ~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~  241 (418)
T 3rq1_A          162 FNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAF  241 (418)
T ss_dssp             BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGG
T ss_pred             cCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHH
Confidence            999999998874    566 7788899 999999999999999999999      8999999999999988765432222


Q ss_pred             c-ccCC-CCC--EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-----cCCCccccccc
Q 022213          236 G-LFGS-IVP--VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-----YSDIPTFIQVC  299 (301)
Q Consensus       236 ~-~~~~-~~~--vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~  299 (301)
                      . .+.. .++  +|+++||||.|+++|+|+||+++...+     ++++++++.....     ..+++.++|.+
T Consensus       242 ~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  309 (418)
T 3rq1_A          242 FNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDD-----EEIADEFFEVNKSTSRATWSNICRPAMRT  309 (418)
T ss_dssp             GGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESS-----HHHHHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             HHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCC-----HHHHHHHHHHHHHHHhhccCCCchHHHHH
Confidence            2 2221 234  689999999999999999999873211     3577777665321     23466676654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=1.7e-37  Score=280.29  Aligned_cols=260  Identities=20%  Similarity=0.304  Sum_probs=210.4

Q ss_pred             CCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhh
Q 022213           20 APAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSR   99 (301)
Q Consensus        20 ~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~   99 (301)
                      .+++.++.+.+.+ +.+. .++ ++|+|+.|+|.    +++|+.+.+++.+.+.  ....|++..|..++|+++++++.+
T Consensus         4 ~~~~~~~~~~~~~-~~~~-~~g-~~i~l~~~~~~----~~~~~~v~~a~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~   74 (376)
T 3ezs_A            4 FEPYPFERLRALL-KEIT-PKK-RGLDLGIGEPQ----FETPKFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKR   74 (376)
T ss_dssp             CCCCHHHHHHHHH-TTCC-CSS-CCCBCSSCCCC----SCCCHHHHHHHHTTGG--GGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHH-Hhhh-ccC-CEEEeCCCCCC----CCCCHHHHHHHHHhhh--hcCCCCCCCCCHHHHHHHHHHHHH
Confidence            3556677776543 3332 235 99999999963    5678889999887763  345799888999999999999988


Q ss_pred             hCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC--CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc
Q 022213          100 DLPYKLSADDVYVTLGCKQAVEVILSVLARP--GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA  177 (301)
Q Consensus       100 ~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  177 (301)
                      .++..+++++|++|+|+++++..++++++++  ||+|+++.|+|.++...++..|.+++.++++...++.+   .+++.+
T Consensus        75 ~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~l~~~~  151 (376)
T 3ezs_A           75 RFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP---SLNEKE  151 (376)
T ss_dssp             HHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC---CCCHHH
T ss_pred             HhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch---hHHhhh
Confidence            7787778999999999999999999999999  99999999999999999999999999999866545433   455555


Q ss_pred             ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-----CCCCEEEEecCcc
Q 022213          178 DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-----SIVPVITLGSISK  252 (301)
Q Consensus       178 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-----~~~~vi~~~s~SK  252 (301)
                      .++++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++.....+...+     ..++++++.|+||
T Consensus       152 ~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  231 (376)
T 3ezs_A          152 LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSK  231 (376)
T ss_dssp             HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTT
T ss_pred             ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchh
Confidence            56789999999999999999999999999999999999999999999988763322222111     3467899999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                      .++++|+|+||++++        ++++++++..... ..+.+.+.|.+
T Consensus       232 ~~g~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a  271 (376)
T 3ezs_A          232 RSSAPGLRSGFIAGD--------SRLLEKYKAFRAYLGYTSANAIQKA  271 (376)
T ss_dssp             TTTCGGGCCEEEEEC--------HHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred             ccCCccceeEEEeeC--------HHHHHHHHHHHhhhcCCCChHHHHH
Confidence            999999999999873        3577888776543 34567777765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=3.4e-36  Score=274.73  Aligned_cols=274  Identities=17%  Similarity=0.292  Sum_probs=222.9

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCC
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGI   86 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~   86 (301)
                      |....+.+.+..+++.++.+.+...+ + +..+.++|+|+.|.|..  ...+++.+.+++.++++..  ... |++..|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~idl~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~   77 (407)
T 2zc0_A            3 YTKYLAGRANWIKGSALADVMKKASE-L-QKKGVKLISLAAGDPDP--ELIPRAVLGEIAKEVLEKEPKSVM-YTPANGI   77 (407)
T ss_dssp             GGGGSCGGGGGCCCCHHHHHHHHHHH-H-HHSSCCCEECCSCCCCT--TTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCC
T ss_pred             chhhhhhhhccCCchHHHHHHHhhhc-c-cCCCCceEeCCCCCCCc--hhCCHHHHHHHHHHHHhhcccccc-CCCCCCC
Confidence            44556777778888888887765432 1 11255899999998763  2446778899998888753  234 8887899


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      .++|+++++++.+.+|..+++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|.+++.++++.+   
T Consensus        78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---  154 (407)
T 2zc0_A           78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---  154 (407)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---
Confidence            99999999999887777778899999999999999999999999999999999999999999999999999987542   


Q ss_pred             CCCHHHHHhhcc----c--CccEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          167 EVDLDAVEALAD----K--NTAAM-VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       167 ~~~~~~l~~~~~----~--~~~~v-~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      ++|++.+++.++    +  +++++ ++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++..+.++..++
T Consensus       155 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  234 (407)
T 2zc0_A          155 GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD  234 (407)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC
T ss_pred             CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC
Confidence            389999999887    5  67776 4689999999999999999999999999999999999999988765555666665


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ..+++++++|+||.++ +|+|+||++++.        +++++++.... ...+++++.|.+
T Consensus       235 ~~~~~i~~~s~sK~~~-~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  286 (407)
T 2zc0_A          235 NEGRVIVAGTLSKVLG-TGFRIGWIIAEG--------EILKKVLMQKQPIDFCAPAISQYI  286 (407)
T ss_dssp             SSCCEEEEEESTTTTC-TTSCCEEEECCH--------HHHHHHHHHHTTTTSSSCHHHHHH
T ss_pred             CCCCEEEEcccccccC-CCcceEEEecCH--------HHHHHHHHHHHhhcCCCCHHHHHH
Confidence            5568999999999998 999999999842        47777776544 233556777654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=1.4e-36  Score=279.36  Aligned_cols=246  Identities=25%  Similarity=0.412  Sum_probs=209.5

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQ  118 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~  118 (301)
                      +++|+|+.|.+.    +++++.+.+++.++++..  ....|++..|..++|+++++++.+.+|..++++ +|++|+|+++
T Consensus        37 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~  112 (429)
T 1yiz_A           37 YKPLNLGQGFPD----YHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYE  112 (429)
T ss_dssp             HCCEECCSSSCS----SCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred             CCEEEecCCCCC----CCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHH
Confidence            579999999864    557789999999988652  234788878999999999999988777677888 9999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC--------CCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER--------NWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      +++.++++++++||+|+++.|+|.++...++..|.+++.++++.+.        ++.+|++.|++.++++++++++++|+
T Consensus       113 a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~  192 (429)
T 1yiz_A          113 ALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPH  192 (429)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCC
Confidence            9999999999999999999999999999999999999999986543        56799999999998888999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ||||.+++.+++++|+++|++||+++|+||+|..+.+++....++..+. ..++++++.|+||.++++|+|+||+++++ 
T Consensus       193 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-  271 (429)
T 1yiz_A          193 NPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE-  271 (429)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH-
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCH-
Confidence            9999999999999999999999999999999999998765555555553 34578999999999999999999999843 


Q ss_pred             CCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          270 NGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                             +++++++.... ...+.+++.|.+
T Consensus       272 -------~~~~~l~~~~~~~~~~~~~~~~~a  295 (429)
T 1yiz_A          272 -------ALLKNLQMVHQNCVYTCATPIQEA  295 (429)
T ss_dssp             -------HHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             -------HHHHHHHHHHhhcccCCChHHHHH
Confidence                   47777766543 234567777754

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3e-37  Score=278.67  Aligned_cols=242  Identities=20%  Similarity=0.288  Sum_probs=209.6

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +++++|+|+.|++    .+++++.+.+++.+++... ...|++ .| .++|+++++++.+.++..+++++|++|+|++++
T Consensus        21 ~g~~~idl~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a   93 (377)
T 3fdb_A           21 YGQGVLPLWVAES----DFSTCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRG   93 (377)
T ss_dssp             SCTTSEECCSSCC----CSCCCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred             cCCCeeeecccCC----CCCCCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHH
Confidence            4789999999985    3678899999999988753 347888 77 899999999999888878889999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ++.++++++++||+|+++.|+|.++...++..|.+++.++++.+    +|++.+++.++++++++++++|+||||.+++.
T Consensus        94 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~  169 (377)
T 3fdb_A           94 LYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAP  169 (377)
T ss_dssp             HHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCH
T ss_pred             HHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence            99999999999999999999999999999999999999998543    89999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++||+++|+|++|..+.+++ ....++..+...++++++.|+||.++++|+|+||+++++       +++
T Consensus       170 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------~~~  242 (377)
T 3fdb_A          170 EWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN-------PSD  242 (377)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS-------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC-------HHH
Confidence            999999999999999999999999999876 555555554445678999999999999999999998754       357


Q ss_pred             HHHHHhhhc-ccCCCccccccc
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++.... ...+++.+.|.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~a  264 (377)
T 3fdb_A          243 AEHWQQLSPVIKDGASTLGLIA  264 (377)
T ss_dssp             HHHHHHSCHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCHHHHHH
Confidence            777776543 234667777754

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5e-37  Score=282.26  Aligned_cols=267  Identities=19%  Similarity=0.258  Sum_probs=217.2

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPA   89 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~l   89 (301)
                      ..+.+.+..+.+.++++.+.       ..++++|+|+.|.|+.  .+.+++.+.+++.++++..  ....|++..|..++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~idl~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l   90 (425)
T 1vp4_A           20 KISKIGQNMKSSIIREILKF-------AADKDAISFGGGVPDP--ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVL   90 (425)
T ss_dssp             HCCHHHHTCCCCCHHHHTTT-------TTSTTCEECCCCSCCG--GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHH
T ss_pred             hhhhhhhcCCCcHHHHHHHh-------ccCCCceeCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHH
Confidence            34556666777777766531       1256899999998752  2346778899998887642  13479888899999


Q ss_pred             HHHHHHHHhhhCCCC-CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           90 RRAIADYLSRDLPYK-LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        90 r~~ia~~l~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      |+++++++.+.+|.. +++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++.+   ++
T Consensus        91 r~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~  167 (425)
T 1vp4_A           91 KQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GM  167 (425)
T ss_dssp             HHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EE
T ss_pred             HHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CC
Confidence            999999997765766 77899999999999999999999999999999999999999999999999999988542   38


Q ss_pred             CHHHHHhhccc--------CccEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          169 DLDAVEALADK--------NTAAM-VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       169 ~~~~l~~~~~~--------~~~~v-~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      |++.+++.+++        +++++ ++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++..+.++..++
T Consensus       168 d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  247 (425)
T 1vp4_A          168 DLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG  247 (425)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH
T ss_pred             CHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC
Confidence            99999988865        67777 4789999999999999999999999999999999999999988765555665555


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ..+++|+++|+||.++ +|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       248 ~~~~~i~~~s~sK~~~-~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  299 (425)
T 1vp4_A          248 GPERVVLLNTFSKVLA-PGLRIGMVAGSK--------EFIRKIVQAKQSADLCSPAITHRL  299 (425)
T ss_dssp             CTTTEEEEEESTTTTC-GGGCEEEEECCH--------HHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             CCCCEEEEeccccccc-cccceEEEeeCH--------HHHHHHHHHhhhhcCCCCHHHHHH
Confidence            5567899999999999 999999999842        47777766543 233567777765

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.1e-35  Score=268.18  Aligned_cols=258  Identities=23%  Similarity=0.398  Sum_probs=213.8

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+.+..+++.++++.+......  ..++++|+|+.|.|.    ++.++.+.+++.+.++.. ...|++..|..++|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~l   75 (370)
T 2z61_A            3 SKRLLNFESFEVMDILALAQKLE--SEGKKVIHLEIGEPD----FNTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKI   75 (370)
T ss_dssp             CHHHHHCCCCTTHHHHHHHHHHH--HTTCCCEECCCCSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHH
T ss_pred             hhhhhhccccHHHHHHHHHHHHH--hcCCCEEEccCCCCC----CCCCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHH
Confidence            35666778888888876554321  236789999999974    455788999999888753 34798878999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++++.+.++..+++++|++|+|++++++.++++++++||+|++++|+|.++...++..|.+++.++        +|+++|
T Consensus        76 a~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l  147 (370)
T 2z61_A           76 SELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESL  147 (370)
T ss_dssp             HHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHH
T ss_pred             HHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHH
Confidence            999998888888899999999999999999999999999999999999999999999999998876        689999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC-CCCCEEEEecCcc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG-SIVPVITLGSISK  252 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~vi~~~s~SK  252 (301)
                      ++.++++++++++++|+||||.+++.+    |+++|++||+++|+||+|..+.+++ .+.++..+. ..++++++.|+||
T Consensus       148 ~~~l~~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK  222 (370)
T 2z61_A          148 EEALSDKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSK  222 (370)
T ss_dssp             HHHCCSSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTT
T ss_pred             HHhcccCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChh
Confidence            999988888999999999999999965    8899999999999999999988865 334444442 3457899999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      .++++|+|+||+++++        +++++++.... ...+++.+.|.+
T Consensus       223 ~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  262 (370)
T 2z61_A          223 LYAMTGWRIGYVISND--------EIIEAILKLQQNLFISAPTISQYA  262 (370)
T ss_dssp             TTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred             ccCCccceEEEEEECH--------HHHHHHHHHHhhcccCCCHHHHHH
Confidence            9999999999999843        47777776543 234667777754

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=7.4e-36  Score=276.16  Aligned_cols=274  Identities=19%  Similarity=0.230  Sum_probs=213.7

Q ss_pred             ccchhhhcCCcccHH-HHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCCCCCC
Q 022213           12 EDKQEHKAAPAVTVK-TSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYATNSGI   86 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~   86 (301)
                      ......+..++...+ .+...........+++++|+|+.|+|    .++.++.+.+++.+++..    .....|++..|.
T Consensus        38 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~  113 (449)
T 3qgu_A           38 QRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDT----TEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQ  113 (449)
T ss_dssp             CCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCC----CCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCC
T ss_pred             hhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCC----CCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCc
Confidence            344555566665443 55544443333345788999999985    467889999999988873    345579888899


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCce----------EE
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE----------VR  156 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~----------~~  156 (301)
                      .+||+++++++.  ++.++++++|++|+|+++++..+ .+++++||+|++++|+|.++...++..|.+          ++
T Consensus       114 ~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~  190 (449)
T 3qgu_A          114 GALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIE  190 (449)
T ss_dssp             HHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEE
T ss_pred             HHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeE
Confidence            999999999997  67778889999999999999998 888899999999999999999999999988          99


Q ss_pred             EeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213          157 HFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                      .++++...++..+++++     .+++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++..+.++.
T Consensus       191 ~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  265 (449)
T 3qgu_A          191 YMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY  265 (449)
T ss_dssp             EEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred             EEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence            99987665665665432     4688999999999999999999999999999999999999999999998876666666


Q ss_pred             ccCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCccc--chhHHHHHHhhh-cccCCCccccccc
Q 022213          237 LFGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ--KSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       237 ~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      .++. .+++|++.||||.|+++|+|+||+++++.-  +.  ...+...+.... ....+++.+.|.+
T Consensus       266 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  330 (449)
T 3qgu_A          266 EIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKAL--KYANGEPVHADWNRVMTTCFNGASNIVQAG  330 (449)
T ss_dssp             GSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTC--BCTTSCBHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             hccCCCCcEEEEecchhhcCCccceeEEEecCHHH--HhhhhhhHHHHHHHHhhcccCCCCHHHHHH
Confidence            6654 356899999999999999999999986532  21  001122333332 2234677777764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=2.5e-36  Score=273.81  Aligned_cols=246  Identities=18%  Similarity=0.248  Sum_probs=210.2

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .++++|+|+.|+|    .+++++.+.+++.+++... ...|++.  ..++++++++++.+.++..+++++|++|+|++++
T Consensus        25 ~g~~~i~~~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a   97 (391)
T 3dzz_A           25 LKEKELPMWIAEM----DFKIAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA   97 (391)
T ss_dssp             CCTTCEECCSSCC----SSCCCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred             cCCCceeccccCC----CCCCCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence            3678999999985    4778899999999988754 3467764  6899999999999888877889999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC-CCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL-PERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~  197 (301)
                      +..++++++++||+|+++.|+|.++...++..|.+++.++++ ....|.+|++.+++.++ .+++++++++|+||||.++
T Consensus        98 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~  177 (391)
T 3dzz_A           98 ISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAW  177 (391)
T ss_dssp             HHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCC
T ss_pred             HHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCccc
Confidence            999999999999999999999999999999999999999875 34456689999999997 6889999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~  275 (301)
                      +.+++++|+++|++||+++|+|++|..+.+.+..+.++..+..  .++++++.|+||.++++|+|+||++++++      
T Consensus       178 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~------  251 (391)
T 3dzz_A          178 SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNP------  251 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSH------
T ss_pred             CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCH------
Confidence            9999999999999999999999999999988766667766653  35789999999999999999999998642      


Q ss_pred             hhHHHHHHhhhc--ccCCCccccccc
Q 022213          276 SGIIDSIKDCLS--IYSDIPTFIQVC  299 (301)
Q Consensus       276 ~~~~~~~~~~~~--~~~~~~~~~q~~  299 (301)
                       +++++++....  ...+++.+.|.+
T Consensus       252 -~~~~~~~~~~~~~~~~~~~~~~~~a  276 (391)
T 3dzz_A          252 -DLRARAEESFFLAGIGEPNLLAIPA  276 (391)
T ss_dssp             -HHHHHHHHHHHHHTCSSCCTTHHHH
T ss_pred             -HHHHHHHHHHHhhccCCCCHHHHHH
Confidence             47777776642  223566666654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5e-36  Score=274.20  Aligned_cols=268  Identities=21%  Similarity=0.324  Sum_probs=216.9

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      -+.+.+..+++.++.+.....+ .. ..++++|+|+.|+|.    ++.++.+.+++ ++++.. ...|++..|..++|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~i~l~~~~~~----~~~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~   87 (409)
T 2gb3_A           16 FSDRVLLTEESPIRKLVPFAEM-AK-KRGVRIHHLNIGQPD----LKTPEVFFERI-YENKPE-VVYYSHSAGIWELREA   87 (409)
T ss_dssp             CCHHHHSCCCCTTGGGHHHHHH-HH-HTTCEEEECSSCCCC----SCCCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHH
T ss_pred             HHHHhhcCCccHHHHHHHHHHH-HH-hcCCCEEeccCCCCC----CCCCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHH
Confidence            4566777788877776654432 21 236789999999973    45667888999 887543 3479887899999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           93 IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      +++++.+.++..+++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|.+++.++++.++++.+ ++.
T Consensus        88 la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~  166 (409)
T 2gb3_A           88 FASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQN  166 (409)
T ss_dssp             HHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTT
T ss_pred             HHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHH
Confidence            9999998788778889999999999999999999999999999999999999999999999999999865345555 889


Q ss_pred             HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCc
Q 022213          173 VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSIS  251 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~S  251 (301)
                      |++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++. ..++  +.. .+++++++|+|
T Consensus       167 l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~--~~~~~~~~i~~~s~s  243 (409)
T 2gb3_A          167 LESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA--LSIESDKVVVIDSVS  243 (409)
T ss_dssp             GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG--GGSCCTTEEEEEEST
T ss_pred             HHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc--cccCCCCEEEEecch
Confidence            9998887889999999999999999999999999999999999999999999888652 3232  211 34689999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||++++++       +++++++.......+++.+.|.+
T Consensus       244 K~~g~~G~r~G~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~a  284 (409)
T 2gb3_A          244 KKFSACGARVGCLITRNE-------ELISHAMKLAQGRLAPPLLEQIG  284 (409)
T ss_dssp             TTTTCGGGCCEEEECSCH-------HHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             hccCCccceEEEEEECcH-------HHHHHHHHHHhccCCCCHHHHHH
Confidence            999999999999998541       47777766543221566676654

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.5e-36  Score=274.96  Aligned_cols=244  Identities=19%  Similarity=0.300  Sum_probs=205.3

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +++|+|+.|++.    +++++.+.+++.++++.. ...|++.  ..++|+++++++.+.+|..+++++|++|+|+++++.
T Consensus        31 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~  103 (399)
T 1c7n_A           31 NEVVPLSVADME----FKNPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF  103 (399)
T ss_dssp             TTCCCCCSSSCS----SCCCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCceeeeecCCC----CCCCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence            589999999853    567889999999888643 3468764  899999999999887776678899999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC-CCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~  199 (301)
                      .++++++++||+|+++.|+|.++...++..|.+++.+++..++ .|.+|++.+++.++ .+++++++++|+||||.+++.
T Consensus       104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~  183 (399)
T 1c7n_A          104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKK  183 (399)
T ss_dssp             HHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCH
T ss_pred             HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCH
Confidence            9999999999999999999999999999999999998875322 46689999999987 578889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      +++++|+++|++||+++|+||+|..+.+++..+.++..++.  .++++++.|+||.++++|+|+||++++++       +
T Consensus       184 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-------~  256 (399)
T 1c7n_A          184 DELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP-------D  256 (399)
T ss_dssp             HHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH-------H
T ss_pred             HHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCH-------H
Confidence            99999999999999999999999999887655556665543  46789999999999999999999998542       4


Q ss_pred             HHHHHHhhhccc--CCCccccccc
Q 022213          278 IIDSIKDCLSIY--SDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~~~--~~~~~~~q~~  299 (301)
                      ++++++......  .+++.+.|.+
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~~~a  280 (399)
T 1c7n_A          257 IRERFTKSRDATSGMPFTTLGYKA  280 (399)
T ss_dssp             HHHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHH
Confidence            777776654422  2467777754

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2e-36  Score=276.85  Aligned_cols=277  Identities=17%  Similarity=0.142  Sum_probs=213.9

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCCCCHHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRS-GKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+..+++.++.+.+...+    ..++++|+|+.|.| +.....++++.+.+++.+.++. .....|++..|..++|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l   83 (412)
T 1ajs_A            8 EVPQAQPVLVFKLIADFRE----DPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             TCCCCCCCHHHHHHHHHHT----CCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             hCcccCCchHHHHHHHHhh----cCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence            4556778889988875543    13678999999986 3221234668899999888733 2455798888999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEE--cCCHHHHHHHHHH--HhcCCC-----CEEEEcCCCCcchHHHHHhcCce-EEEeecCCC
Q 022213           94 ADYLSRDLPYKLSADDVYV--TLGCKQAVEVILS--VLARPG-----ANVLLPRPGWPYYEGIAQRKQVE-VRHFDLLPE  163 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~--~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~  163 (301)
                      ++++...++..+++++|++  |+|+++|++.+++  .++++|     |+|+++.|+|.++...++..|.+ ++.+++..+
T Consensus        84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  163 (412)
T 1ajs_A           84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT  163 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred             HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence            9999665555557889999  9999999999965  446799     99999999999999999999999 999987544


Q ss_pred             CCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCcccc
Q 022213          164 RNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLF  238 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~  238 (301)
                      +++.+|++.+++.+++   +++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++  ....++..+
T Consensus       164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  243 (412)
T 1ajs_A          164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF  243 (412)
T ss_dssp             TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence            5678999999998864   55677789999999999999999999999999999999999999988764  123334333


Q ss_pred             C-CCCCEEEEecCcccCCCCcceeEEEEee--CCCCcccchhHHHHHHhh-hcccCCCccccccc
Q 022213          239 G-SIVPVITLGSISKRWLVPGWRFGWLVTN--DPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQVC  299 (301)
Q Consensus       239 ~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~  299 (301)
                      . ..+++|++.|+||.++++|+|+||++++  +++ .+  +.++..++.. .....+++.+.|.+
T Consensus       244 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~a  305 (412)
T 1ajs_A          244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPD-SI--LRVLSQMQKIVRVTWSNPPAQGARI  305 (412)
T ss_dssp             HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHH-HH--HHHHHHHHHHHHTTTSSCCSHHHHH
T ss_pred             hccCCcEEEEEecccccCCCCcceEEEEEecCCHH-HH--HHHHHHHHHHHhcccCCCChHHHHH
Confidence            2 2457899999999999999999999983  211 00  1245555553 23344467777765

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=7.6e-36  Score=270.59  Aligned_cols=244  Identities=18%  Similarity=0.319  Sum_probs=208.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|++    .+++++.+.+++.+++... ...|++  +..++++++++++.+.++..+++++|++|+|+++++
T Consensus        31 ~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~  103 (391)
T 4dq6_A           31 TNDLLPMWVADM----DFKAAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAI  103 (391)
T ss_dssp             CSCSEECCSSSC----SSCCCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred             CCCceeccccCC----CCCCCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHH
Confidence            578999999985    4778899999999988643 335655  569999999999999888778899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC--CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL--PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      +.++++++++||+|+++.|+|.++...++..|.+++.++++  .+.+|.+|++.+++.+++ ++++++++|+||||.+++
T Consensus       104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~  182 (391)
T 4dq6_A          104 SLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWT  182 (391)
T ss_dssp             HHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCC
T ss_pred             HHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcC
Confidence            99999999999999999999999999999999999999986  345577999999999987 889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      .+++++|+++|++||+++|+||+|..+.+++..+.++..+..  .++++++.|+||.++++|+|+||++++++       
T Consensus       183 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-------  255 (391)
T 4dq6_A          183 KDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDE-------  255 (391)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSH-------
T ss_pred             HHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCH-------
Confidence            999999999999999999999999999988766667666654  36789999999999999999999998542       


Q ss_pred             hHHHHHHhhhc-c-cCCCccccccc
Q 022213          277 GIIDSIKDCLS-I-YSDIPTFIQVC  299 (301)
Q Consensus       277 ~~~~~~~~~~~-~-~~~~~~~~q~~  299 (301)
                      +++++++.... . ..+++.+.|.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~a  280 (391)
T 4dq6_A          256 KDYKLLDDAFTRIDIKRNNCFSLVA  280 (391)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHH
Confidence            47777766643 1 23556666654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=1.5e-35  Score=272.78  Aligned_cols=272  Identities=19%  Similarity=0.235  Sum_probs=206.0

Q ss_pred             hhhhcCCcc-cHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CCCCCCCCCCCCHHH
Q 022213           15 QEHKAAPAV-TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GKFNCYATNSGIPPA   89 (301)
Q Consensus        15 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~l   89 (301)
                      ...+..++. ....+...........+++++|+|+.|++.    ++.|+.+.+++.+++..    .....|++..|..+|
T Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l  103 (432)
T 3ei9_A           28 SNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTT----EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPL  103 (432)
T ss_dssp             HHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCC----SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHH
T ss_pred             hHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCC----CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHH
Confidence            344455553 455555554444444457789999999864    77889999999988873    234578888899999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCc------------eEEE
Q 022213           90 RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQV------------EVRH  157 (301)
Q Consensus        90 r~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~------------~~~~  157 (301)
                      |+++++|+.+  +.++++++|++|+|+++++.. +..++++||.|++++|+|.++...++..|.            ++++
T Consensus       104 ~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~  180 (432)
T 3ei9_A          104 RAAIAKTFYG--GLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY  180 (432)
T ss_dssp             HHHHHHHHHT--TTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEE
T ss_pred             HHHHHHHHHc--cCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEE
Confidence            9999999974  455778999999999999987 477889999999999999999888887773            6778


Q ss_pred             eecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc
Q 022213          158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL  237 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~  237 (301)
                      ++++...++..+++.     ..+++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..
T Consensus       181 ~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~  254 (432)
T 3ei9_A          181 MRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFE  254 (432)
T ss_dssp             EECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGG
T ss_pred             eccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhh
Confidence            887655555555443     24688999999999999999999999999999999999999999999988753 334444


Q ss_pred             cCC-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          238 FGS-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       238 ~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +.. .+++|+++||||.|+++|+|+||+++++.........++..++.... ...+++.++|.+
T Consensus       255 ~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  318 (432)
T 3ei9_A          255 IPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG  318 (432)
T ss_dssp             STTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHH
T ss_pred             cCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHH
Confidence            432 35689999999999999999999998664200000113555555432 344567777764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=3e-36  Score=275.61  Aligned_cols=272  Identities=15%  Similarity=0.095  Sum_probs=201.0

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +...|+++|..+.+...+     +..++|||++|   +++.  ..+..+.|+++..+.++.+..+.|.|..|+++||+++
T Consensus        24 v~~~p~d~i~~l~~~~~~-----d~~~kinLgvG~y~d~~g--~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ai   96 (420)
T 4h51_A           24 IQAQAPDVIFDLAKRAAA-----AKGPKANLVIGAYRDEQG--RPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEA   96 (420)
T ss_dssp             CCCCCCCHHHHHHHHHHH-----CCSSCEECCSCCCBCTTS--CBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHhc-----CCCCCEEeecCcccCCCC--CCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHH
Confidence            556789999999876543     24458999999   3332  2355578889888777766666799999999999999


Q ss_pred             HHHHhhhCCCCCCCCC--EEEcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcchHHHHHhcCceE-EEeecCCCCCC
Q 022213           94 ADYLSRDLPYKLSADD--VYVTLGCKQAVEVILSVL----ARPGANVLLPRPGWPYYEGIAQRKQVEV-RHFDLLPERNW  166 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~--i~~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~  166 (301)
                      ++++...   ....++  .+-|.|+|.|+..++..+    .+|||+|++++|+|.+|..+++..|.+. ..++....+++
T Consensus        97 a~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~  173 (420)
T 4h51_A           97 VKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV  173 (420)
T ss_dssp             HHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred             HHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence            9998542   233333  345888888887666655    4699999999999999999999999874 44444445567


Q ss_pred             CCCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCc--c-ccCC
Q 022213          167 EVDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM--G-LFGS  240 (301)
Q Consensus       167 ~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~--~-~~~~  240 (301)
                      .+|.+.+.+.+.   ++++++++++||||||.+++.++|++|+++|+++++++|+|++|.+|.|++....+.  . ..+.
T Consensus       174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~  253 (420)
T 4h51_A          174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR  253 (420)
T ss_dssp             EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence            789888877663   456677888999999999999999999999999999999999999999875322221  1 1233


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCccccccc
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQVC  299 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~  299 (301)
                      ..+++++.||||+|+++|+|+||++++...... ..++...+... ....++++...|.+
T Consensus       254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~  312 (420)
T 4h51_A          254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARL  312 (420)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             CceEEEEeccccccccccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHH
Confidence            457899999999999999999999987653110 01122233333 23455777777654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=2.2e-36  Score=276.56  Aligned_cols=278  Identities=17%  Similarity=0.136  Sum_probs=210.9

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHH-HHhcCCCCCCCCCCCCHHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVD-AVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      +++...+++.++.+.+.+.+.    .++++|+|+.|+| +..+..++++.+.+++.+ .+.......|++..|..++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~   81 (412)
T 1yaa_A            6 NNIELLPPDALFGIKQRYGQD----QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTCCCCCCCTTHHHHHHHHTC----CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             ccCcccCCCcHHHHHHHHhcC----CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence            345567778888887655332    3578999999986 322233567889999988 7764445579888899999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEE--cCCHHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           93 IADYLSRDLPYKLSADDVYV--TLGCKQAVEVIL--SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      +++++.+.++..+++++|++  |+|++++++.++  ..++++||+|+++.|+|.++...++..|.+++.+++...+++.+
T Consensus        82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  161 (412)
T 1yaa_A           82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence            99999765555567889999  999999999984  34457999999999999999999999999999998722235779


Q ss_pred             CHHHHHhhcccC--cc-EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC--CCCCCccccC-CCC
Q 022213          169 DLDAVEALADKN--TA-AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFG-SIV  242 (301)
Q Consensus       169 ~~~~l~~~~~~~--~~-~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~--~~~~~~~~~~-~~~  242 (301)
                      |++.+++.++++  .+ ++++++||||||.+++.+++++|+++|++||+++|+|++|..+.+++  ....++..+. ...
T Consensus       162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T 1yaa_A          162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence            999999988653  24 44559999999999999999999999999999999999999988764  1222332222 123


Q ss_pred             ---CEEEEecCcccCCCCcceeEEEE--e-e---CCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          243 ---PVITLGSISKRWLVPGWRFGWLV--T-N---DPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       243 ---~vi~~~s~SK~~~~~G~rvG~~~--~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                         ++|+++|+||.|+.+|+|+||++  + +   ++. .  .+.++.+++... ....+++.+.|.+
T Consensus       242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~~~a  305 (412)
T 1yaa_A          242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKT-I--KPAVTSQLAKIIRSEVSNPPAYGAKI  305 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHH-H--HHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHH-H--HHHHHHHHHHHHhhccCCCChHHHHH
Confidence               78999999999998899999998  5 1   210 0  011666776633 3344557777765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=4.7e-36  Score=277.72  Aligned_cols=276  Identities=17%  Similarity=0.189  Sum_probs=209.9

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHH--hcCCCCCCCCCCCCHHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAV--RSGKFNCYATNSGIPPARR   91 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~   91 (301)
                      ..+...++++|+.+.+.+.++    ..+.+|+|+.|.| +..+..+..+.+.+++.+..  .......|.+..|..++|+
T Consensus        26 ~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~  101 (448)
T 3meb_A           26 SGFPASPPDAILNLTVLYNAD----TNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE  101 (448)
T ss_dssp             TTCCCCCCCTTHHHHHHHHHC----CCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred             hcCCCCCCChHHHHHHHHHhC----CCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence            456677888999988765432    3456899999998 43222345567777766555  1233557998889999999


Q ss_pred             HHHHHHhhhCCCC---CCCCCEEE--cCCHHHHHHH--HHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeec
Q 022213           92 AIADYLSRDLPYK---LSADDVYV--TLGCKQAVEV--ILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDL  160 (301)
Q Consensus        92 ~ia~~l~~~~~~~---~~~~~i~~--t~g~~~al~~--~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~  160 (301)
                      ++++++.   +..   +++++|++  |+|++++++.  .+.+++++||+|++++|+|.++...++    ..|.+++.+++
T Consensus       102 ~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~  178 (448)
T 3meb_A          102 AAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY  178 (448)
T ss_dssp             HHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred             HHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence            9999993   322   22689999  9999999988  556677899999999999999999999    99999999998


Q ss_pred             CCCC-CCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCC
Q 022213          161 LPER-NWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTP  234 (301)
Q Consensus       161 ~~~~-~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~  234 (301)
                      ...+ ++.+|++.+++.+++   +++++++++||||||.+++.+++++|+++|++||+++|+|++|..+.+++.  ...+
T Consensus       179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~  258 (448)
T 3meb_A          179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFA  258 (448)
T ss_dssp             BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred             cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchh
Confidence            4444 678999999998874   466778899999999999999999999999999999999999999887641  1223


Q ss_pred             cccc-CCCCCEEEEecCcccCCCCcceeEEE--Ee--------eCCCCcccchhHHHHHHhhh-cccCCCcccccccC
Q 022213          235 MGLF-GSIVPVITLGSISKRWLVPGWRFGWL--VT--------NDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVCE  300 (301)
Q Consensus       235 ~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~--~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~  300 (301)
                      +..+ ....++|++.||||.|+++|+|+||+  ++        +++. .  .+++++.++... ...++++.+.|.++
T Consensus       259 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~~~a~  333 (448)
T 3meb_A          259 VRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKA-L--SAAMVSGMTLQIRKTWSMSAIHGAYIV  333 (448)
T ss_dssp             HHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHH-H--HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             HHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHH-H--HHHHHHHHHHHHhcccCCccHHHHHHH
Confidence            3322 23457899999999999999999998  55        3210 0  014666666543 34556777777653

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=1.4e-36  Score=277.75  Aligned_cols=275  Identities=15%  Similarity=0.139  Sum_probs=198.3

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      .+++...++++|+.+.+.+.+.    ..+++|+|+.|+|.   +++.++.+.+++.++ .......|.+..|..+||+++
T Consensus        17 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~---d~~~~~~v~~a~~~a-~~~~~~~y~~~~g~~~lr~~i   88 (409)
T 4eu1_A           17 QGPGSMGKPDPILGLGQDFRMD----PAKRKVNLSIGVYR---DDADQPFVLECVKQA-TLGTNMDYAPVTGIASFVEEA   88 (409)
T ss_dssp             ----------CHHHHHHHHHHC----CCSSCEECCCSSCC---CTTSCCCCCHHHHTC-CCCSCCCCCCTTCCHHHHHHH
T ss_pred             hhcCCCCCCChHHHHHHHHhhC----CCcCceeeeeeEEE---CCCCCEeecHHHHhc-CccccccCCCCCCcHHHHHHH
Confidence            3456677888888887765442    35789999999972   234444555666655 223455898888999999999


Q ss_pred             HHHHhhhCCCCCCCCCEE--EcCCHHHHHHHHH---HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           94 ADYLSRDLPYKLSADDVY--VTLGCKQAVEVIL---SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~--~t~g~~~al~~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      ++++....+..+++++|.  .|.|+++++..+.   ++++++||+|++++|+|.++...++..|.+++.+++..++++.+
T Consensus        89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (409)
T 4eu1_A           89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL  168 (409)
T ss_dssp             HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred             HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence            999843221112367884  4899999988754   45568999999999999999999999999999998855567889


Q ss_pred             CHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC--CCCCcccc-CCCC
Q 022213          169 DLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI--PYTPMGLF-GSIV  242 (301)
Q Consensus       169 ~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~-~~~~  242 (301)
                      |++.+++.+++   +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ +...
T Consensus       169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
T 4eu1_A          169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP  248 (409)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred             cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence            99999998852   345666799999999999999999999999999999999999999988652  12223222 3446


Q ss_pred             CEEEEecCcccCCCCcceeEEE--EeeCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          243 PVITLGSISKRWLVPGWRFGWL--VTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      ++|+++||||.|+++|+|+||+  ++++++ .  .+.++++++... ....+++.+.|.+
T Consensus       249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (409)
T 4eu1_A          249 NLIVAQSFSKNFGLYGHRCGALHISTASAE-E--AKRLVSQLALLIRPMYNNPPLYGAWV  305 (409)
T ss_dssp             CCEEEEECTTTSSCGGGCCEEEEEECSSHH-H--HHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             cEEEEecCcccccCccCCceEEEEEeCCHH-H--HHHHHHHHHHHHhhhcCCCChHHHHH
Confidence            7899999999999999999997  554421 0  011556666543 2344666777765

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=2.1e-35  Score=267.29  Aligned_cols=256  Identities=27%  Similarity=0.377  Sum_probs=206.7

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      ..+.+..+++.++.+.+...       .+++|+|+.|.|.    ++.++.+.+++.++++.  ...|++..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~-------~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~l   70 (381)
T 1v2d_A            4 HPRTEAAKESIFPRMSGLAQ-------RLGAVNLGQGFPS----NPPPPFLLEAVRRALGR--QDQYAPPAGLPALREAL   70 (381)
T ss_dssp             CGGGGGC---CHHHHHHHHH-------HHTCEECCCCSCS----SCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHH
T ss_pred             hhhhhhcCccHHHHHHHHHh-------cCCeEEecCCCCC----CCCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHH
Confidence            44555666666666654322       2468999999863    56778999999988865  44798877999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC--CCCCCCCCHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL--PERNWEVDLD  171 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~  171 (301)
                      ++++      ++++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++++  ++ ++.+|++
T Consensus        71 a~~~------~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~  143 (381)
T 1v2d_A           71 AEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLS  143 (381)
T ss_dssp             HHHH------TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHH
T ss_pred             HHhc------CCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHH
Confidence            9997      4577899999999999999999999999999999999999999999999999999875  22 3679999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++.++++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+ +....++..+ ..++++++.|+|
T Consensus       144 ~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~s  221 (381)
T 1v2d_A          144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSAG  221 (381)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEHH
T ss_pred             HHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeech
Confidence            99999988889999999999999999999999999999999999999999999887 4334444433 345789999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.++++|+|+||++++.        ++++.++.... ...+++++.|.+
T Consensus       222 K~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  262 (381)
T 1v2d_A          222 KRLEATGYRVGWIVGPK--------EFMPRLAGMRQWTSFSAPTPLQAG  262 (381)
T ss_dssp             HHTTCGGGCCEEEECCT--------TTHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             hhcCCcccceEEEEeCH--------HHHHHHHHHHhhcccCCCcHHHHH
Confidence            99999999999999843        25566655432 234566677654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=1.8e-36  Score=275.52  Aligned_cols=276  Identities=18%  Similarity=0.183  Sum_probs=200.3

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP-TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIAD   95 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~   95 (301)
                      +...+++.++.+...+.+    ..++++|+|+.|++ +..+..++++.+.+++.+.+.......|++..|..++|+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~   80 (396)
T 2q7w_A            5 ITAAPADPILGLADLFRA----DERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE   80 (396)
T ss_dssp             CCCCCC---------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHhc----cCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHH
Confidence            445677777776654332    12568999999984 2112235678899999888765455579888899999999999


Q ss_pred             HHhhhCCCCCCCCCEEE--cCCHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           96 YLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        96 ~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      ++....+..+++++|++  |+|++++++.+++.+.  ++||+|+++.|+|.++...++..|.+++.+++..++++.+|++
T Consensus        81 ~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  160 (396)
T 2q7w_A           81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD  160 (396)
T ss_dssp             HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred             HHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHH
Confidence            99654332245789998  9999999999998764  6999999999999999999999999999998854456779999


Q ss_pred             HHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCC-CCCCCccccCC-CCCEEE
Q 022213          172 AVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGS-IPYTPMGLFGS-IVPVIT  246 (301)
Q Consensus       172 ~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~-~~~vi~  246 (301)
                      .+++.+++   +++++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++ ....++..+.. .+++++
T Consensus       161 ~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~  240 (396)
T 2q7w_A          161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEE
Confidence            99998865   35677889999999999999999999999999999999999999988753 12223333322 357899


Q ss_pred             EecCcccCCCCcceeEEEEe--eCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          247 LGSISKRWLVPGWRFGWLVT--NDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       247 ~~s~SK~~~~~G~rvG~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      ++|+||.++++|+|+||+++  ++++ .+  ++++..++... ....+++.+.|.+
T Consensus       241 ~~s~sK~~~~~G~riG~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~a  293 (396)
T 2q7w_A          241 ASSYSXNFGLYNERVGACTLVAADSE-TV--DRAFSQMKAAIRANYSNPPAHGASV  293 (396)
T ss_dssp             EEECTTTTTCGGGCCEEEEEECSSHH-HH--HHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             EEeccccccccccccceEEEEcCCHH-HH--HHHHHHHHHHHhhccCCCCcHHHHH
Confidence            99999999999999999986  2321 00  13555555432 2334457777764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.5e-35  Score=269.11  Aligned_cols=242  Identities=20%  Similarity=0.276  Sum_probs=200.5

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH-HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP-ARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +++|+|+.|++.    +++++.+.+++.+++... ...|++.  ..+ +|+++++++.+.++..+++++|++|+|+++++
T Consensus        28 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al  100 (390)
T 1d2f_A           28 ADLLPFTISDMD----FATAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMV  100 (390)
T ss_dssp             --CEECCSSSCS----SCCCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHH
T ss_pred             CCeeEeeecCCC----CCCCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHH
Confidence            479999999863    567889999999888643 3468774  678 99999999988888778899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC-CCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~  198 (301)
                      +.++++++++||+|+++.|+|.++...++..|.+++.++++.++ .|.+|++.+++.+++ +++++++++|+||||.+++
T Consensus       101 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~  180 (390)
T 1d2f_A          101 SELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT  180 (390)
T ss_dssp             HHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcC
Confidence            99999999999999999999999999999999999999886543 466899999999876 7888888999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC-CEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      .+++++|+++|++||+++|+||+|..+.+++..+.++..++... + + +.|+||.++++|+|+||++++++       +
T Consensus       181 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d-~-~~s~sK~~~~~G~r~G~~~~~~~-------~  251 (390)
T 1d2f_A          181 CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA-L-LTSGSKSFNIPALTGAYGIIENS-------S  251 (390)
T ss_dssp             TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE-E-EECSHHHHTCGGGCCEEEEECSH-------H
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh-h-ccCccHhhcccChhheEEEECCH-------H
Confidence            99999999999999999999999999988766555655554321 2 3 99999999999999999998542       4


Q ss_pred             HHHHHHhhhc--c-cCCCccccccc
Q 022213          278 IIDSIKDCLS--I-YSDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~--~-~~~~~~~~q~~  299 (301)
                      ++++++....  . ..+++.+.|.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~a  276 (390)
T 1d2f_A          252 SRDAYLSALKGRDGLSSPSVLALTA  276 (390)
T ss_dssp             HHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred             HHHHHHHHHhhhcccCCCCHHHHHH
Confidence            7777766543  2 23566666654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=1.4e-36  Score=279.47  Aligned_cols=248  Identities=18%  Similarity=0.258  Sum_probs=201.0

Q ss_pred             CCCeeeccCCCC-CCCCCCCChHHH--HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCC---EEEcC
Q 022213           41 PRPVVPLGYGDP-TAFPCFRTAVEA--EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADD---VYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p-~~~p~~~~~~~~--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~---i~~t~  114 (301)
                      .+++|+|+.|+| .    ++.++.+  .+++.+.+.......|++..|..++|+++++++.+.+ .++++++   |++|+
T Consensus        46 ~~~~i~l~~g~~~~----~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~  120 (430)
T 2x5f_A           46 KSTTYNATIGMATN----KDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTN  120 (430)
T ss_dssp             TTCSEECCCSSCEE----TTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEES
T ss_pred             CCCcEEeeeeeccC----CCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcC
Confidence            357999999997 4    3334444  5555554432134579988899999999999998764 6677888   99999


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCC
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR-KQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPG  190 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~  190 (301)
                      |++++++.++++++++||+|++++|+|.++...++. .|.+++.++++.++ +.+|++++++.+++   +++++++++|+
T Consensus       121 g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~  199 (430)
T 2x5f_A          121 ALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPN  199 (430)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSC
T ss_pred             CchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCC
Confidence            999999999999999999999999999999999998 99999999886543 67999999998876   77889999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHh-----CCCeEEEccCCcccccCCCCCCCcc-ccCC-CCC---EEEEecCcccCCCCcce
Q 022213          191 NPCGNVFTYHHLQEIAEMARK-----LRVMVVADEVYGHLTFGSIPYTPMG-LFGS-IVP---VITLGSISKRWLVPGWR  260 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~-----~~~~ii~D~~y~~~~~~~~~~~~~~-~~~~-~~~---vi~~~s~SK~~~~~G~r  260 (301)
                      ||||.+++.+++++|+++|++     +|+++|+||+|..+.+++..+.++. .++. .++   +|+++|+||.|+++|+|
T Consensus       200 nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  279 (430)
T 2x5f_A          200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFR  279 (430)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGC
T ss_pred             CCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCC
Confidence            999999999999999999999     9999999999999988765444543 4432 456   89999999999999999


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhhhc-----ccCCCccccccc
Q 022213          261 FGWLVTNDPNGIFQKSGIIDSIKDCLS-----IYSDIPTFIQVC  299 (301)
Q Consensus       261 vG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~~  299 (301)
                      +||+++.+++     ++++++++....     ...+++.+.|.+
T Consensus       280 iG~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~a  318 (430)
T 2x5f_A          280 VGFMTFGTSD-----QTTKEVLEAKVKGLIRSNISSGPLPTQSA  318 (430)
T ss_dssp             CEEEEEBCCC-----HHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             eEEEEEecCC-----HHHHHHHHHHHhhhhhcccCCCChHHHHH
Confidence            9999982211     247777766543     234677777765

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=6e-35  Score=262.55  Aligned_cols=234  Identities=21%  Similarity=0.292  Sum_probs=196.0

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +.+++|+|+.|++    .+++++.+.+++.+.+.  ....|+. .+..++|+++++++      ++++++|++|+|++++
T Consensus        30 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~~~y~~-~~~~~lr~~la~~~------~~~~~~v~~~~g~t~a   96 (363)
T 3ffh_A           30 GLTKITKLSSNEN----PLGTSKKVAAIQANSSV--ETEIYPD-GWASSLRKEVADFY------QLEEEELIFTAGVDEL   96 (363)
T ss_dssp             TCSCCEECSSCSC----TTCCCHHHHHHHHTCBS--CCCBC-----CHHHHHHHHHHH------TCCGGGEEEESSHHHH
T ss_pred             CCCceEEccCCCC----CCCCCHHHHHHHHHHHH--HhhcCCC-cchHHHHHHHHHHh------CCChhhEEEeCCHHHH
Confidence            3578999999985    36778899998887664  3446754 58899999999999      4678899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ++.++++++++||+|+++.|+|.++...++..|.+++.+++++  ++.+|++++++.++++++++++++|+||||.+++.
T Consensus        97 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~  174 (363)
T 3ffh_A           97 IELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIEL  174 (363)
T ss_dssp             HHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCH
Confidence            9999999999999999999999999999999999999999864  56799999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|++.|++ |+++|+|++|.++.+ +.....+......++++++.|+||.++++|+|+||++++        ++++
T Consensus       175 ~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~  244 (363)
T 3ffh_A          175 ADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD--------KEII  244 (363)
T ss_dssp             HHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC--------HHHH
T ss_pred             HHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC--------HHHH
Confidence            999999988877 999999999999887 444444444455678999999999999999999999983        3588


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++.... ..+.+.+.|.+
T Consensus       245 ~~l~~~~~-~~~~~~~~~~~  263 (363)
T 3ffh_A          245 RQLNIVRP-PFNTTSIGQKL  263 (363)
T ss_dssp             HHHHHTCC-SCCCBHHHHHH
T ss_pred             HHHHHhCC-CCCCCHHHHHH
Confidence            88877655 33566666654

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=7.3e-36  Score=271.87  Aligned_cols=264  Identities=22%  Similarity=0.289  Sum_probs=213.8

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCC
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGI   86 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~   86 (301)
                      |..+.+.+....+++.++.+.+..       ..+++|+|+.|.|+.  .+.+++.+.+++.++++..  ....|++..|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~   76 (397)
T 2zyj_A            6 WSEAFGKGAGRIQASTIRELLKLT-------QRPGILSFAGGLPAP--ELFPKEEAAEAAARILREKGEVALQYSPTEGY   76 (397)
T ss_dssp             HHHHSCGGGGGCCCCHHHHHHHHH-------TSTTCEEESSCCCCG--GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCC
T ss_pred             HHHHhhhhhcccCchHHHHHHhhc-------cCCCceecCCCCCCc--hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCC
Confidence            444566667777777777766532       146799999998753  2345778888888877642  13478887899


Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      .++|+++++++      ++++++|++|+|++++++.++++++++||+|+++.|+|.++...++..|.+++.++.+.+   
T Consensus        77 ~~l~~~la~~~------g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---  147 (397)
T 2zyj_A           77 APLRAFVAEWI------GVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---  147 (397)
T ss_dssp             HHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---
T ss_pred             HHHHHHHHHHh------CCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---
Confidence            99999999999      357789999999999999999999999999999999999999999999999999987542   


Q ss_pred             CCCHHHHHhhccc-CccEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC---
Q 022213          167 EVDLDAVEALADK-NTAAM-VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI---  241 (301)
Q Consensus       167 ~~~~~~l~~~~~~-~~~~v-~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~---  241 (301)
                      ++|++.+++.+++ +++++ ++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++..+.++..++.+   
T Consensus       148 ~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  227 (397)
T 2zyj_A          148 GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGY  227 (397)
T ss_dssp             EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCC
Confidence            3899999998876 77877 568999999999999999999999999999999999999998876555566555544   


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++++|+||.++ +|+|+||++++.        +++++++.... ...+++.+.|.+
T Consensus       228 ~~~i~~~s~sK~~~-~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  277 (397)
T 2zyj_A          228 PGVIYLGSFSKVLS-PGLRVAFAVAHP--------EALQKLVQAKQGADLHTPMLNQML  277 (397)
T ss_dssp             CCEEEEEESTTTTC-GGGCCEEEECCH--------HHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             CeEEEEeccccccc-ccceeEEEecCH--------HHHHHHHHHHHhhcCCCCHHHHHH
Confidence            67899999999998 999999999842        47777766543 234557777764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=2e-35  Score=264.66  Aligned_cols=237  Identities=18%  Similarity=0.260  Sum_probs=201.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+|+|+.|++    .+++++.+.+++.+.+..  ...|+. .+..++|+++++++      ++++++|++|+|++
T Consensus        12 ~~~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~~   78 (354)
T 3ly1_A           12 APSTDNPIRINFNEN----PLGMSPKAQAAARDAVVK--ANRYAK-NEILMLGNKLAAHH------QVEAPSILLTAGSS   78 (354)
T ss_dssp             CCCSSSCEECSSCCC----SSCCCHHHHHHHHHTGGG--TTSCCH-HHHHHHHHHHHHHT------TSCGGGEEEESHHH
T ss_pred             CCCCCceEEccCCCC----CCCCCHHHHHHHHHHHhh--CcCCCC-CchHHHHHHHHHHh------CCChHHEEEeCChH
Confidence            345789999999985    367889999999988763  446854 57889999999998      46788999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc--cCccEEEEcCCCCCccc
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD--KNTAAMVIINPGNPCGN  195 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~  195 (301)
                      +++..++++++++||+|+++.|+|.++...++..|.+++.++++.  ++.+|++.+++.++  ++++++++++|+||||.
T Consensus        79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~  156 (354)
T 3ly1_A           79 EGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGT  156 (354)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCC
T ss_pred             HHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCC
Confidence            999999999999999999999999999999999999999998753  46799999999998  68999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~  274 (301)
                      +++.+++++|+++| ++|+++|+|++|..+.+++.....+...+.. +++++++|+||.++++|+|+||++++       
T Consensus       157 ~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-------  228 (354)
T 3ly1_A          157 ITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-------  228 (354)
T ss_dssp             CCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-------
T ss_pred             CcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-------
Confidence            99999999999999 8999999999999988876544444444444 67899999999999999999999973       


Q ss_pred             chhHHHHHHhhhcccCCCccccccc
Q 022213          275 KSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                       ++++++++..... .+++.+.|.+
T Consensus       229 -~~~~~~~~~~~~~-~~~~~~~~~a  251 (354)
T 3ly1_A          229 -PTVIALMGRYVAG-EKINFSGVDA  251 (354)
T ss_dssp             -HHHHHHHGGGTTC-SCCCHHHHHH
T ss_pred             -HHHHHHHHHhcCC-CCCCHHHHHH
Confidence             3588888877654 4667776654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=1.1e-35  Score=270.12  Aligned_cols=274  Identities=19%  Similarity=0.189  Sum_probs=209.2

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPT-AFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIA   94 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia   94 (301)
                      .++..+++.++.+.+.+.+.    .++++|+|+.|+|. ..+..++++.+.+++.++++......|++..|..++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la   79 (394)
T 2ay1_A            4 NLKPQAPDKILALMGEFRAD----PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMG   79 (394)
T ss_dssp             GCCCCCCCSHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHH
T ss_pred             cCccCCCccHHHHHHHHHhC----CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHH
Confidence            35677888898887765432    35789999999862 11224667889999988876545567988889999999999


Q ss_pred             HHHhhhCCCCCCCCCEEE--cCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCH
Q 022213           95 DYLSRDLPYKLSADDVYV--TLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDL  170 (301)
Q Consensus        95 ~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  170 (301)
                      +++...   .+++++|++  |+|+++|++.+++.+..  +||+|+++.|+|.++...++..|.+++.+++..++++.+|+
T Consensus        80 ~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  156 (394)
T 2ay1_A           80 ELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF  156 (394)
T ss_dssp             HHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred             HHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence            998432   236789999  99999999999988865  99999999999999999999999999999885445677999


Q ss_pred             HHHHhhcccC---ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCC-CCCCccccCC-CCCEE
Q 022213          171 DAVEALADKN---TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSI-PYTPMGLFGS-IVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~~~-~~~vi  245 (301)
                      +.+++.+++.   ++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++. ...++..+.. .++++
T Consensus       157 ~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i  236 (394)
T 2ay1_A          157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL  236 (394)
T ss_dssp             HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEE
Confidence            9999988653   45677799999999999999999999999999999999999999887531 1112322221 34689


Q ss_pred             EEecCcccCCCCcceeEEEEe--eCCCCcccchhHHHHHHhhh-cccCCCccccccc
Q 022213          246 TLGSISKRWLVPGWRFGWLVT--NDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~  299 (301)
                      +++|+||.++++|+|+||+++  ++++ ++  ++++..++... ....+++.+.|.+
T Consensus       237 ~~~s~sK~~~~~G~riG~~~~~~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~a  290 (394)
T 2ay1_A          237 IAASCSKNFGIYRERTGCLLALCADAA-TR--ELAQGAMAFLNRQTYSFPPFHGAKI  290 (394)
T ss_dssp             EEEECTTTTTCGGGCEEEEEEECSSHH-HH--HHHHHHHHHHHHTTTSSCCCHHHHH
T ss_pred             EEEeccCCCcCcCCccceEEEEeCCHH-HH--HHHHHHHHHHHhhhcCCCChHHHHH
Confidence            999999999999999999997  3321 00  12334443322 2334457777754

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=1.4e-34  Score=263.92  Aligned_cols=241  Identities=18%  Similarity=0.298  Sum_probs=187.8

Q ss_pred             hhhhcCCccc-HHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCCCCHHH
Q 022213           15 QEHKAAPAVT-VKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----KFNCYATNSGIPPA   89 (301)
Q Consensus        15 ~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~l   89 (301)
                      .+....+++. +.++...+........++++|+|+.|++.    +++++.+.+++.++++..    ....|++..|..+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l   80 (400)
T 3asa_A            5 PHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTT----QPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPAL   80 (400)
T ss_dssp             HHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCC----CCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHH
T ss_pred             hhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCC----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHH
Confidence            3444444433 34444444332223346789999999863    567788889888877531    24579877899999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCce-EEEeecCCCCCCCC
Q 022213           90 RRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVE-VRHFDLLPERNWEV  168 (301)
Q Consensus        90 r~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~  168 (301)
                      |+++++++.  ++. +++++|++|+|+++++..++. ++++||+|+++.|+|.++...++..|.+ ++.++++.+.++..
T Consensus        81 r~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~  156 (400)
T 3asa_A           81 RQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFP  156 (400)
T ss_dssp             HHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCC
T ss_pred             HHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCccc
Confidence            999999974  343 678899999999999998764 4579999999999999999989999998 99998765444444


Q ss_pred             CHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEE
Q 022213          169 DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITL  247 (301)
Q Consensus       169 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~  247 (301)
                      ++++   .  ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..++. .++++++
T Consensus       157 ~l~~---~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  231 (400)
T 3asa_A          157 EFPE---D--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEI  231 (400)
T ss_dssp             CCCT---T--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred             Chhh---c--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEE
Confidence            4332   1  46889999999999999999999999999999999999999999998876544445555543 3468999


Q ss_pred             ecCcccCCCCcceeEEEEeeC
Q 022213          248 GSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       248 ~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+||.|+++|+|+||+++++
T Consensus       232 ~s~sK~~g~~GlriG~~~~~~  252 (400)
T 3asa_A          232 NSFSKPLGFAGIRLGWTVIPQ  252 (400)
T ss_dssp             EECCGGGTTTTCCCEEEECCT
T ss_pred             ecchhhcCCcchheeEEeeCh
Confidence            999999999999999999855

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=5.2e-35  Score=268.88  Aligned_cols=245  Identities=21%  Similarity=0.353  Sum_probs=196.9

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----------CCCCCCCCCCCCHHHHHHHHHHHhhhCCCC--CCCCC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----------GKFNCYATNSGIPPARRAIADYLSRDLPYK--LSADD  109 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~~~  109 (301)
                      .++|+|+.+...    ++ ++.+.+++.+....          .....|+++.|..+||+++++++.+.++..  +++++
T Consensus        36 ~~~i~l~~~~~~----~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~  110 (428)
T 1iay_A           36 NGVIQMGLAENQ----LC-LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER  110 (428)
T ss_dssp             TSBEECSSCCCC----SS-HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred             Cceeeeccccch----hh-HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence            478999987531    33 34777777643210          013479888899999999999998877755  77899


Q ss_pred             EEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH-HhcCceEEEeecCCCCCCCCCHHHHHhhccc------Ccc
Q 022213          110 VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA-QRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTA  182 (301)
Q Consensus       110 i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~  182 (301)
                      |++|+|++++++.++++++++||+|+++.|+|.++...+ ...|.+++.++++.+++|.+|++.+++.+++      +++
T Consensus       111 i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  190 (428)
T 1iay_A          111 VVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVK  190 (428)
T ss_dssp             CEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceE
Confidence            999999999999999999999999999999999987644 4679999999886556678999999988753      578


Q ss_pred             EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--------CCCEEEEecCcccC
Q 022213          183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--------IVPVITLGSISKRW  254 (301)
Q Consensus       183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--------~~~vi~~~s~SK~~  254 (301)
                      ++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.|++..+.++..+..        .++++++.|+||.|
T Consensus       191 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~  270 (428)
T 1iay_A          191 GLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM  270 (428)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS
T ss_pred             EEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc
Confidence            8999999999999999999999999999999999999999998886544444444332        36789999999999


Q ss_pred             CCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          255 LVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       255 ~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++|+|+||++++++       +++++++..... .+++.++|.+
T Consensus       271 g~~Glr~G~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~a  307 (428)
T 1iay_A          271 GLPGFRVGIIYSFND-------DVVNCARKMSSF-GLVSTQTQYF  307 (428)
T ss_dssp             SCGGGCEEEEEESCH-------HHHHHHHHHHTT-SCCCHHHHHH
T ss_pred             CCCCceEEEEEeCCH-------HHHHHHHHHHhc-ccCCHHHHHH
Confidence            999999999998542       477777765442 3567777764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=6e-35  Score=268.07  Aligned_cols=245  Identities=18%  Similarity=0.260  Sum_probs=209.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ++++|+|+.|++    .++.++.+.+++.+++.... ..|++.  ..++++++++++.+.++..+++++|++|+|+++|+
T Consensus        60 g~~~i~~~~~~~----~~~~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~  132 (421)
T 3l8a_A           60 NPELLQMWVADM----DFLPVPEIKEAIINYGREHI-FGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI  132 (421)
T ss_dssp             CTTCEECCSSCC----CSCCCHHHHHHHHHHHHHCC-SSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred             CCCeeecccCCC----CCCCCHHHHHHHHHHHhcCC-cCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence            678999999985    47788999999999887533 356653  48999999999999888778899999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC-CCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL-PERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~  198 (301)
                      +.++++++++||+|+++.|+|.++...++..|.+++.+++. .+.++.+|++.|++.++ ++++++++++|+||||.+++
T Consensus       133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~  212 (421)
T 3l8a_A          133 SIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWD  212 (421)
T ss_dssp             HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCC
T ss_pred             HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCC
Confidence            99999999999999999999999999999999999999986 45556789999999997 68899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      .+++++|+++|++||+++|+||+|..+.+++..+.++..+..  .++++.+.|+||.++++|+|+||++++++       
T Consensus       213 ~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~-------  285 (421)
T 3l8a_A          213 NDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNE-------  285 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSH-------
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCH-------
Confidence            999999999999999999999999999998776777766654  36789999999999999999999998642       


Q ss_pred             hHHHHHHhhhc-c-cCCCccccccc
Q 022213          277 GIIDSIKDCLS-I-YSDIPTFIQVC  299 (301)
Q Consensus       277 ~~~~~~~~~~~-~-~~~~~~~~q~~  299 (301)
                      ++++.++.... . ..+.+.+.|.+
T Consensus       286 ~l~~~~~~~~~~~~~~~~n~~~~~a  310 (421)
T 3l8a_A          286 SLRRKFQYRQLANNQHEVPTVGMIA  310 (421)
T ss_dssp             HHHHHHHHHHHHTTCSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHH
Confidence            47777766542 2 33566666654

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4.5e-35  Score=263.58  Aligned_cols=234  Identities=18%  Similarity=0.248  Sum_probs=197.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+++|+|+.|++.    +++++.+.+++.+.+.  ....|++..+ .++|+++++++      ++++++|++|+|+++++
T Consensus        29 ~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~--~~~~y~~~~~-~~lr~~la~~~------~~~~~~v~~~~g~~~a~   95 (365)
T 3get_A           29 VKEVIKLASNENP----FGTPPKAIECLRQNAN--KAHLYPDDSM-IELKSTLAQKY------KVQNENIIIGAGSDQVI   95 (365)
T ss_dssp             CSCCEECSSCCCT----TCSCHHHHHHHHHHGG--GTTSCCCTTC-HHHHHHHHHHH------TCCGGGEEEESSHHHHH
T ss_pred             CCceEEecCCCCC----CCCCHHHHHHHHHHHH--hhccCCCCCh-HHHHHHHHHHh------CCCcceEEECCCHHHHH
Confidence            4789999999853    6788999999998886  3457887666 99999999998      46788999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      +.++++++++||+|+++.|+|..+...++..|.+++.+++ ..+++ +|++++++.++++++++++++|+||||.+++.+
T Consensus        96 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~  173 (365)
T 3get_A           96 EFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDAS  173 (365)
T ss_dssp             HHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHH
Confidence            9999999999999999999999999999999999999987 34567 999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCccccc--CCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTF--GSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~--~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      ++++|+++| ++|+++|+|++|..+.|  .+..+. .+...+..+++++++|+||.++++|+|+||++++        ++
T Consensus       174 ~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~--------~~  244 (365)
T 3get_A          174 EATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN--------AN  244 (365)
T ss_dssp             HHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC--------HH
T ss_pred             HHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC--------HH
Confidence            999999988 57999999999998885  433322 2333334467899999999999999999999983        35


Q ss_pred             HHHHHHhhhcccCCCccccccc
Q 022213          278 IIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++++..... .+++.+.|.+
T Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~  265 (365)
T 3get_A          245 IISAFYKLRAP-FNVSNLALKA  265 (365)
T ss_dssp             HHHHHHHHSCT-TCSCHHHHHH
T ss_pred             HHHHHHHhcCC-CCcCHHHHHH
Confidence            88888776553 3467777654

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=7.4e-35  Score=268.46  Aligned_cols=246  Identities=20%  Similarity=0.332  Sum_probs=199.8

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----------CCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----------FNCYATNSGIPPARRAIADYLSRDLP--YKLSA  107 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----------~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~  107 (301)
                      +..+|+|+.+..     ....+.+.+++.+......           +..|++..|..+||+++++++.+.++  +.+++
T Consensus        37 p~~~i~lg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~  111 (435)
T 3piu_A           37 TNGIIQMGLAEN-----QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP  111 (435)
T ss_dssp             TTSBEECSSCCC-----CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred             CCCeEEeccccc-----cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH
Confidence            456899998753     1235666777665433111           13699988999999999999986443  45778


Q ss_pred             CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCCCCCHHHHHhhccc------C
Q 022213          108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNWEVDLDAVEALADK------N  180 (301)
Q Consensus       108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~  180 (301)
                      ++|++|+|+++++..++++++++||.|+++.|+|.++...+. ..|.+++.++++.+++|.+|++.|++.+++      +
T Consensus       112 ~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  191 (435)
T 3piu_A          112 NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLR  191 (435)
T ss_dssp             GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999988777 789999999987766788999999998865      7


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC----------CCCEEEEecC
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS----------IVPVITLGSI  250 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~----------~~~vi~~~s~  250 (301)
                      +++|++++|+||||.+++.+++++|+++|++||+++|+||+|..+.|++..+.++..+..          .+++++++|+
T Consensus       192 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~  271 (435)
T 3piu_A          192 VKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSL  271 (435)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEES
T ss_pred             eEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEee
Confidence            788999999999999999999999999999999999999999999888766655544332          4578999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ||.|+++|+|+||++++++       +++..++..... .+.+++.|.+
T Consensus       272 sK~~g~~G~r~G~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~  312 (435)
T 3piu_A          272 SKDLGLPGFRVGAIYSNDD-------MVVAAATKMSSF-GLVSSQTQHL  312 (435)
T ss_dssp             SSSSCCGGGCEEEEEESCH-------HHHHHHHHHGGG-SCCCHHHHHH
T ss_pred             ecccCCCceeEEEEEeCCH-------HHHHHHHHHhhc-CCCCHHHHHH
Confidence            9999999999999998542       466666665443 3456666654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=6.5e-34  Score=256.15  Aligned_cols=232  Identities=20%  Similarity=0.347  Sum_probs=196.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCC-CCCCEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKL-SADDVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~g~~~a  119 (301)
                      .+++|+|+.|++    .+++++.+.+++.+.+.......|++ .+..++|+++++++      ++ ++++|++|+|++++
T Consensus        29 ~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a   97 (367)
T 3euc_A           29 SHGLVKLDAMEN----PYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM------QVPAGMEVLLGNGSDEI   97 (367)
T ss_dssp             CTTCEECCSSCC----CCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH------TCCTTCEEEEEEHHHHH
T ss_pred             CCCeeEccCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh------CCCCcceEEEcCCHHHH
Confidence            568999999984    36788899999998887434557877 48899999999998      34 67899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~  198 (301)
                      ++.++++++++||+|+++.|+|.++...++..|.+++.++++.  ++.+|++.+++.+++ +++++++++|+||||.+++
T Consensus        98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  175 (367)
T 3euc_A           98 ISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD  175 (367)
T ss_dssp             HHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999864  567999999999987 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccch
Q 022213          199 YHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       199 ~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                      .+++++|+++|++|  |+++|+|++|..+.+.+  .  ...++..++++++.|+||. +++|+|+||++++        +
T Consensus       176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~--~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~--------~  242 (367)
T 3euc_A          176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--W--MSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGD--------P  242 (367)
T ss_dssp             HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--S--GGGGGTCTTEEEEEECCCT-TSCSCCEEEEEEC--------H
T ss_pred             HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--h--HHHHhhCCCEEEEecchhh-cccccCceeeeeC--------H
Confidence            99999999999999  99999999999876432  1  2233445678999999999 9999999999983        2


Q ss_pred             hHHHHHHhhhcccCCCccccccc
Q 022213          277 GIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++++.... ..+.+.+.|.+
T Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~a  264 (367)
T 3euc_A          243 QWLEQLDKVRP-PYNVNVLTEAT  264 (367)
T ss_dssp             HHHHHHGGGCC-SSCCCHHHHHH
T ss_pred             HHHHHHHHhCC-CCCCCHHHHHH
Confidence            57788777654 23466666654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=2.2e-34  Score=272.26  Aligned_cols=235  Identities=16%  Similarity=0.269  Sum_probs=185.4

Q ss_pred             ccHHHHHHHHHhhcccCCCC----CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHH-
Q 022213           23 VTVKTSLASIIDSVNKNDPR----PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL-   97 (301)
Q Consensus        23 ~~i~~~~~~~~~~~~~~~~~----~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l-   97 (301)
                      +.++..+..+.+.....++.    .+|+|+.|.|.    ++ ++.+.+++.+.+..   ..|+++.|..++|+++++++ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~----~~-~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~  152 (546)
T 2zy4_A           81 DGIEGRFERYIAENRDQEGVRFLGKSLSYVRDQLG----LD-PAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYI  152 (546)
T ss_dssp             TTHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSC----CC-HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHhcCCCCcchhHHhhhecccCCCC----CC-ChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHH
Confidence            46666555555433211111    28999999864    43 45566666666642   47999889999999987755 


Q ss_pred             hhhCCCCC---CCCCEEEcCCHHHHHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHh--cCceEEEeecCCCCCCC
Q 022213           98 SRDLPYKL---SADDVYVTLGCKQAVEVILSV-----LARPGANVLLPRPGWPYYEGIAQR--KQVEVRHFDLLPERNWE  167 (301)
Q Consensus        98 ~~~~~~~~---~~~~i~~t~g~~~al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~--~g~~~~~~~~~~~~~~~  167 (301)
                      .++++...   ++++|++|+|+++++..++++     ++++||+|++++|+|.+|...+..  .|.+++.++++++++|.
T Consensus       153 ~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~  232 (546)
T 2zy4_A          153 IREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQ  232 (546)
T ss_dssp             HHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTB
T ss_pred             HHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCC
Confidence            44443322   468999999999999999988     478999999999999999877554  46888999887777788


Q ss_pred             CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHH--HhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA--RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~--~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +|++.+++.++.+++++++++||||||.+++.+++++|+++|  +++|++||+||+|.++.++   +.++.... .+++|
T Consensus       233 ~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-~~~~i  308 (546)
T 2zy4_A          233 YPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-PENTL  308 (546)
T ss_dssp             CCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-GGGEE
T ss_pred             CCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-CCCEE
Confidence            999999998877889999999999999999999999999999  8899999999999998753   23333332 25799


Q ss_pred             EEecCcccCCCCcceeEEEEeeCC
Q 022213          246 TLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +++||||.++++|+|+||+++++.
T Consensus       309 ~~~S~SK~~g~~GlRiG~~~~~~~  332 (546)
T 2zy4_A          309 LVYSFSKYFGATGWRLGVVAAHQQ  332 (546)
T ss_dssp             EEEESTTTTTCGGGCEEEEEEESS
T ss_pred             EEEeCccccCCCCcceEEEEECCH
Confidence            999999999999999999998764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.9e-35  Score=269.69  Aligned_cols=241  Identities=19%  Similarity=0.143  Sum_probs=191.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHH--HHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAI--VDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~--~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+|+|+.|.|+.. .++.++.+.+++  .+++...  ...+|++..|..+||+++++++      ++++++|++|+|+
T Consensus        32 ~~~~i~~~~G~p~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~  104 (427)
T 3ppl_A           32 KNLKLDLTRGKPSSE-QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDAS  104 (427)
T ss_dssp             TCCCEECCCCSCCHH-HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH------TSCGGGEEECSSC
T ss_pred             CCceEecCCCCCChH-HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh------CCCcceEEEeCCc
Confidence            457899999997621 122222355554  4444332  2568999889999999999999      5688999999999


Q ss_pred             HHHH--HHHHHHhcC--C----------CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-cCc
Q 022213          117 KQAV--EVILSVLAR--P----------GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-KNT  181 (301)
Q Consensus       117 ~~al--~~~~~~l~~--~----------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~  181 (301)
                      ++++  +.+++++++  +          ||+|++++|+|..+...++..|.+++.++++.+   ++|++.|+++++ .++
T Consensus       105 ~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~  181 (427)
T 3ppl_A          105 SLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQV  181 (427)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTE
T ss_pred             HHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCC
Confidence            9999  588888887  6          999999999999999999999999999998643   389999999985 467


Q ss_pred             cEEEEc-CCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEccCCcccccCCCCCC--Ccccc----CCCCCEEEEecCccc
Q 022213          182 AAMVII-NPGNPCGNVFTYHHLQEIAEMA-RKLRVMVVADEVYGHLTFGSIPYT--PMGLF----GSIVPVITLGSISKR  253 (301)
Q Consensus       182 ~~v~l~-~p~nptG~~~~~~~l~~i~~~~-~~~~~~ii~D~~y~~~~~~~~~~~--~~~~~----~~~~~vi~~~s~SK~  253 (301)
                      ++++++ +||||||.+++.+++++|+++| ++||+++|+||+|..+.|++....  ++..+    +..+++|+++||||.
T Consensus       182 ~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  261 (427)
T 3ppl_A          182 KGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI  261 (427)
T ss_dssp             EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT
T ss_pred             eEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc
Confidence            777654 7899999999999999999999 999999999999999888654322  33322    245689999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                       +++|+|+||++++.        +++.+++.... ...+++++.|.++
T Consensus       262 -~~~G~r~G~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~  300 (427)
T 3ppl_A          262 -TLAGAGVSFFLTSA--------ENRKWYTGHAGIRGIGPNKVNQLAH  300 (427)
T ss_dssp             -SCTTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             -cCcCccEEEEEcCH--------HHHHHHHHHhhcccCCCCHHHHHHH
Confidence             89999999999743        47777777654 3556788888653

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=1.5e-33  Score=253.71  Aligned_cols=233  Identities=17%  Similarity=0.312  Sum_probs=189.6

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +++++|+|+.|++.    +++++.+.+++.+++..  ...|++ .|..++|+++++++      ++++++|++|+|++++
T Consensus        22 ~~~~~idl~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~v~~~~g~~~a   88 (364)
T 1lc5_A           22 SPDQLLDFSANINP----LGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETES   88 (364)
T ss_dssp             CGGGSEECSSCCCT----TCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHH
T ss_pred             CccceEEeccccCC----CCCCHHHHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHH------CcCHHHEEECCCHHHH
Confidence            35679999999853    55778899999887753  347866 48999999999999      4577899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+++++  +||+|+++.|+|.++...++..|.+++.++++.++++.+ ++.+.+.++++++++++++|+||||.+++.
T Consensus        89 l~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~  165 (364)
T 1lc5_A           89 IFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPER  165 (364)
T ss_dssp             HHHHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCH
Confidence            99999999  789999999999999999999999999999865344444 565666666678889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE-eeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV-TNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~-~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++||+++|+||+|..+.+++...  +..++..++++++.|+||.++++|+|+||++ ++        +++
T Consensus       166 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~  235 (364)
T 1lc5_A          166 PLLQAIADRCKSLNINLILDEAFIDFIPHETGF--IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD--------DAA  235 (364)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS--GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC--------HHH
T ss_pred             HHHHHHHHHhhhcCcEEEEECcChhhccCccch--hhHhccCCCEEEEEECchhhcCCccceEEEEECC--------HHH
Confidence            999999999999999999999999988753222  2223444678999999999999999999998 53        357


Q ss_pred             HHHHHhhhcccCCCccccccc
Q 022213          279 IDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++.... ..+.+.++|.+
T Consensus       236 ~~~l~~~~~-~~~~~~~~~~~  255 (364)
T 1lc5_A          236 MARMRRQQM-PWSVNALAALA  255 (364)
T ss_dssp             HHHHHHHSC-TTCSCHHHHHH
T ss_pred             HHHHHHhCC-CCCCCHHHHHH
Confidence            777776654 33566677654

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6.4e-37  Score=278.51  Aligned_cols=244  Identities=18%  Similarity=0.302  Sum_probs=204.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      ++|+|+.|+|    .+++++.+.+++.+++... ...|++.  ..++|+++++++.+.++..+++++|++|+|+++++..
T Consensus        32 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~  104 (392)
T 3b1d_A           32 QLLPAWIADM----DFEVMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI  104 (392)
Confidence            8999999996    3677888999998887543 3467764  7899999999998877777888999999999999999


Q ss_pred             HHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC-CCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHH
Q 022213          123 ILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER-NWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ++++++++||+|+++.|+|.++...++..|.+++.+++..++ +|.+|++.+++.++ .+++++++++|+||||.+++.+
T Consensus       105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~  184 (392)
T 3b1d_A          105 AIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWERE  184 (392)
Confidence            999999999999999999999998888899999888875332 46789999999887 5788888999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      ++++|+++|++||+++|+||+|..+.+++..+.++..+..  .++++++.|+||.++++|+|+||++++++       ++
T Consensus       185 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-------~~  257 (392)
T 3b1d_A          185 VLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP-------TL  257 (392)
Confidence            9999999999999999999999999987655556655544  46789999999999999999999998653       26


Q ss_pred             HHHHHhhhccc--CCCcccccccC
Q 022213          279 IDSIKDCLSIY--SDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~~~--~~~~~~~q~~~  300 (301)
                      ++.++......  .+++.+.|.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~a~  281 (392)
T 3b1d_A          258 CAQFKHQQLVNNHHEVSSLGYIAT  281 (392)
Confidence            66666654322  24577777654

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=9.9e-34  Score=254.46  Aligned_cols=222  Identities=21%  Similarity=0.375  Sum_probs=183.3

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +++|+|+.|.+.    +++|+.+      ++  .....|++. +..++|+++|+++      ++++++|++|+|++++++
T Consensus        29 ~~~i~l~~~~~~----~~~~~~v------a~--~~~~~Y~~~-~~~~lr~~la~~~------~~~~~~v~~~~G~~~ai~   89 (356)
T 1fg7_A           29 NGDVWLNANEYP----TAVEFQL------TQ--QTLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIE   89 (356)
T ss_dssp             TCSEECSSCCCS----SCCCCCC------CC--CCTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHH
T ss_pred             CceEEeeCCCCC----CCCCHhH------hh--hhhccCCCc-cHHHHHHHHHHHh------CCChHHEEEcCCHHHHHH
Confidence            468999999853    4444444      12  235579885 5899999999999      467889999999999999


Q ss_pred             HHHHHhcCCC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .++++++++| |+|+++.|+|.++...++..|.+++.+++.  .++.+|++++++.++ +++++++++||||||.+++.+
T Consensus        90 ~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~  166 (356)
T 1fg7_A           90 LLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQ  166 (356)
T ss_dssp             HHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHH
Confidence            9999999999 999999999999999999999999988875  356799999999887 789999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|+++|+ +|+++|+||+|..+...    .++..+ +..+++++++|+||.|+++|+|+||++++        ++++
T Consensus       167 ~l~~l~~~~~-~~~~li~De~~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~  233 (356)
T 1fg7_A          167 DFRTLLELTR-GKAIVVADEAYIEFCPQ----ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN--------EEVI  233 (356)
T ss_dssp             HHHHHHHHHT-TTCEEEEECTTGGGSGG----GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC--------HHHH
T ss_pred             HHHHHHHhCC-CCCEEEEEccchhhcCC----CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC--------HHHH
Confidence            9999999999 99999999999987621    122222 33467899999999999999999999983        2577


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++...... +++.++|.+
T Consensus       234 ~~l~~~~~~~-~~~~~~~~a  252 (356)
T 1fg7_A          234 NLLMKVIAPY-PLSTPVADI  252 (356)
T ss_dssp             HHHHHHSCSS-CSCHHHHHH
T ss_pred             HHHHHhcCCC-CCCHHHHHH
Confidence            8887765433 567777754

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=1.7e-33  Score=252.63  Aligned_cols=231  Identities=19%  Similarity=0.321  Sum_probs=192.0

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +++++|+|+.|.+.    +++++.+.+++.+++..  ...|+. .+..++|+++++++      ++++++|++|+|++++
T Consensus        24 ~~~~~idl~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~t~a   90 (361)
T 3ftb_A           24 KGRELLDYSSNINP----LGIPKSFLNNIDEGIKN--LGVYPD-VNYRRLNKSIENYL------KLKDIGIVLGNGASEI   90 (361)
T ss_dssp             ----CEETTCCCCT----TCSCHHHHTTHHHHHHG--GGSCCC-TTCHHHHHHHHHHH------TCCSCEEEEESSHHHH
T ss_pred             CCCCEEEecCCCCC----CCCCHHHHHHHHHHHHH--hcCCCC-ccHHHHHHHHHHHh------CCCcceEEEcCCHHHH
Confidence            47889999999753    66788999999988874  346755 68899999999999      4678899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ++.+++++    |+|+++.|+|.++...++..|.+++.++++.+.+  ++++.+++.+++ ++++++++|+||||.+++.
T Consensus        91 l~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~  163 (361)
T 3ftb_A           91 IELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINK  163 (361)
T ss_dssp             HHHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCH
T ss_pred             HHHHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCH
Confidence            99999988    9999999999999999999999999999865444  677999999987 9999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|++||+++|+|++|..+.++ ............+++++++|+||.++++|+|+||++..+       ++++
T Consensus       164 ~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~-------~~~~  235 (361)
T 3ftb_A          164 EKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN-------KEIA  235 (361)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC-------HHHH
T ss_pred             HHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC-------HHHH
Confidence            99999999999999999999999998886 333344444455678999999999999999999998433       3588


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++..... .+.+.+.|.+
T Consensus       236 ~~~~~~~~~-~~~~~~~~~~  254 (361)
T 3ftb_A          236 AKIKAKQNP-WNINCFAEMA  254 (361)
T ss_dssp             HHHHTTSCT-TCSCHHHHHH
T ss_pred             HHHHhhCCC-CCCCHHHHHH
Confidence            888776552 3566666654

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.4e-34  Score=265.65  Aligned_cols=239  Identities=20%  Similarity=0.172  Sum_probs=189.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHH--hcC-CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAV--RSG-KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~--~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+|+|+.|+|... .+++++.+.+++.+.+  ... ...+|++..|..+||+++++|+      ++++++|++|+|++++
T Consensus        33 ~~i~l~~g~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~------~~~~~~i~~t~G~~~a  105 (422)
T 3d6k_A           33 LSLDLTRGKPSAE-QLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL------GLPADLVVAQDGSSLN  105 (422)
T ss_dssp             CCEECCCCSCCHH-HHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH------TCCGGGEEECSSCHHH
T ss_pred             CeEeCCCCCCChh-hCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh------CCChhHEEEecchHHH
Confidence            5899999997310 1455556767665442  122 3558999999999999999999      4688999999999999


Q ss_pred             H--HHHHHHhcCC------------CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEE
Q 022213          120 V--EVILSVLARP------------GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAM  184 (301)
Q Consensus       120 l--~~~~~~l~~~------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v  184 (301)
                      +  .++++++.++            +|+|++++|+|.++...++..|.+++.++++.+   ++|++.+++.+++ +++++
T Consensus       106 l~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v  182 (422)
T 3d6k_A          106 IMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGM  182 (422)
T ss_dssp             HHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTSTTEEEE
T ss_pred             HHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcCCCeEE
Confidence            7  6777888766            358999999999999999999999999998642   3899999998875 67877


Q ss_pred             E-EcCCCCCcccCCCHHHHHHHHHHHH-hCCCeEEEccCCcc--cccCCCCCCCccc----cCCCCCEEEEecCcccCCC
Q 022213          185 V-IINPGNPCGNVFTYHHLQEIAEMAR-KLRVMVVADEVYGH--LTFGSIPYTPMGL----FGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       185 ~-l~~p~nptG~~~~~~~l~~i~~~~~-~~~~~ii~D~~y~~--~~~~~~~~~~~~~----~~~~~~vi~~~s~SK~~~~  256 (301)
                      + +++||||||.+++.+++++|+++|+ +||+++|+||+|..  +.+++....++..    .+..+++|+++||||. ++
T Consensus       183 ~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~  261 (422)
T 3d6k_A          183 WTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH  261 (422)
T ss_dssp             EECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SC
T ss_pred             EEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cC
Confidence            7 6899999999999999999999999 99999999999986  4433333334422    2345679999999999 89


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ||+|+||++++.        +++++++.... ...+++.++|.++
T Consensus       262 ~GlriG~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~  298 (422)
T 3d6k_A          262 AGSGVSFFASSK--------ENIEWYASHANVRGIGPNKLNQLAH  298 (422)
T ss_dssp             TTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             cccceEEEEeCH--------HHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            999999999842        57787777654 3456788888653

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=5.5e-34  Score=263.17  Aligned_cols=267  Identities=20%  Similarity=0.303  Sum_probs=203.7

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCee-eccCCCCCCCCCCCChHHHHHHHHHHHhc-------CC----CCCCCCCC
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVV-PLGYGDPTAFPCFRTAVEAEDAIVDAVRS-------GK----FNCYATNS   84 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-------~~----~~~Y~~~~   84 (301)
                      .+..+++.++.++..+.+...   .+++| +|+.|.|...  .+..+.+.+++.+.+.+       ..    ...|++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   83 (444)
T 3if2_A            9 QKFTQPTGISQLMDDLGDALK---SDQPVNMLGGGNPAKI--DAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQ   83 (444)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHH---SSSCCEECSCCCCCCC--HHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTT
T ss_pred             hhccCchhHHHHHHHHHhhhc---CchhhhccCCCCCCcc--cchHHHHHHHHHHHHhccccccccchhhhhhhccCCCC
Confidence            345566788887776655432   37899 9999997531  01114556666666654       21    24699889


Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC--------------EEEEc-CCCCcchHHH--
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA--------------NVLLP-RPGWPYYEGI--  147 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd--------------~Vl~~-~p~~~~~~~~--  147 (301)
                      |..+||+++|+|+.+.+++.+++++|++|+|+++++++++++++++||              +|+++ .|+|..+...  
T Consensus        84 g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~  163 (444)
T 3if2_A           84 GDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV  163 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc
Confidence            999999999999998888889999999999999999999999999988              78876 9999988653  


Q ss_pred             ----HHhcCceEEEeecCCCC---CCCCCHHHHHhh---cccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213          148 ----AQRKQVEVRHFDLLPER---NWEVDLDAVEAL---ADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV  217 (301)
Q Consensus       148 ----~~~~g~~~~~~~~~~~~---~~~~~~~~l~~~---~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii  217 (301)
                          +...|..++.++++.++   ++.+|++.|+++   +.++++++++++|+||||.+++.+++++|+++|++||+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li  243 (444)
T 3if2_A          164 EGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLI  243 (444)
T ss_dssp             SSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             ccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEE
Confidence                34567778777765422   357899999998   66788999999999999999999999999999999999999


Q ss_pred             EccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccc
Q 022213          218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFI  296 (301)
Q Consensus       218 ~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  296 (301)
                      +|++|+.+... ..+.... ....++++++.|+||. +++|+|+||++++.        +++.+++.... ...+++++.
T Consensus       244 ~De~~~~~~~~-~~~~~~~-~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~--------~l~~~~~~~~~~~~~~~~~~~  312 (444)
T 3if2_A          244 IDNAYGMPFPN-IIYSDAH-LNWDNNTILCFSLSKI-GLPGMRTGIIVADA--------KVIEAVSAMNAVVNLAPTRFG  312 (444)
T ss_dssp             EECTTCTTTTC-CBCSCCC-CCCCTTEEEEEESTTT-TCGGGCCEEEECCH--------HHHHHHHHHHHHHHSSCCCHH
T ss_pred             EECCCCCcccc-ccccccc-ccCCCCEEEEechhhc-cCCCCceEEEEECH--------HHHHHHHHHHHhccCCCChHH
Confidence            99999863211 1111111 1223578999999997 99999999998732        57777776654 344567777


Q ss_pred             ccc
Q 022213          297 QVC  299 (301)
Q Consensus       297 q~~  299 (301)
                      |.+
T Consensus       313 ~~a  315 (444)
T 3if2_A          313 AAI  315 (444)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=3.4e-34  Score=262.16  Aligned_cols=260  Identities=22%  Similarity=0.292  Sum_probs=186.7

Q ss_pred             CcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC----CCCCCCCCCCHHHHHHHHHH
Q 022213           21 PAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK----FNCYATNSGIPPARRAIADY   96 (301)
Q Consensus        21 ~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~   96 (301)
                      .++.+...+....+..   .++++|+|+.|.|...  .++.+.+.+++.+.+.+..    ...|++..|..+||++++++
T Consensus        13 ~~~~~~~~~~~~~~~~---~~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~   87 (417)
T 3g7q_A           13 RHSGITRLMEDLNDGL---RTPGAIMLGGGNPAHI--PAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVL   87 (417)
T ss_dssp             ---CHHHHHHHHHC--------CCEECSCCCCCCC--HHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhhc---cCCCceEecCcCCCCC--ChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHH
Confidence            5667777766554422   3578999999997631  1112566777777665431    23799989999999999999


Q ss_pred             HhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC-----EEEEc-CCCCcchHHHHHhc------CceEEEeecCCCC
Q 022213           97 LSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA-----NVLLP-RPGWPYYEGIAQRK------QVEVRHFDLLPER  164 (301)
Q Consensus        97 l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd-----~Vl~~-~p~~~~~~~~~~~~------g~~~~~~~~~~~~  164 (301)
                      +.+.++..+++++|++|+|++++++.++++++++||     +|+++ +|+|.++...+...      +..+..++.. ..
T Consensus        88 ~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  166 (417)
T 3g7q_A           88 LRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-QF  166 (417)
T ss_dssp             HHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-EE
T ss_pred             HHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-cc
Confidence            998888889999999999999999999999999987     89997 99999887654322      2333333321 11


Q ss_pred             CCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCE
Q 022213          165 NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPV  244 (301)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~v  244 (301)
                      ++.+|++.++  ++++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+... ....... ....+++
T Consensus       167 ~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~-~~~~~~~-~~~~~~~  242 (417)
T 3g7q_A          167 KYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG-IIFSEAR-PLWNPNI  242 (417)
T ss_dssp             EEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC-CBCSCCC-CCCCTTE
T ss_pred             ccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc-ccccccc-cCCCCCE
Confidence            4568888887  6677899999999999999999999999999999999999999999863211 1111111 1123578


Q ss_pred             EEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          245 ITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       245 i~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |++.|||| ++++|+|+||++++        ++++++++.... ...+++++.|.+
T Consensus       243 i~~~s~sK-~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  289 (417)
T 3g7q_A          243 ILCMSLSK-LGLPGSRCGIIIAN--------DKTITAIANMNGIISLAPGGMGPAM  289 (417)
T ss_dssp             EEEEESGG-GTCTTSCCEEEECC--------HHHHHHHHHHHHHHCCCCCSHHHHH
T ss_pred             EEEEechh-ccCCCcceEEEEeC--------HHHHHHHHHhhcceeeCCCcHHHHH
Confidence            99999999 59999999999873        357788777654 344567777764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=3.7e-34  Score=262.68  Aligned_cols=240  Identities=20%  Similarity=0.255  Sum_probs=193.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHH--HHHhcC-CCCCC-CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIV--DAVRSG-KFNCY-ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~--~~~~~~-~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...+|+|+.|.|+.. .++.++.+.+++.  +.+... ....| ++..|..+||+++++++      ++++++|++|+|+
T Consensus        24 ~~~~i~l~~g~p~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~   96 (423)
T 3ez1_A           24 RGLNLNMQRGQPADA-DFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL------DVKAENVLVWNNS   96 (423)
T ss_dssp             HTCCEESCCCCCCHH-HHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT------TSCGGGEEECSSC
T ss_pred             CCceEecCCCCCChH-hCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh------CCChhhEEEeCCc
Confidence            357899999997521 1456666777764  444322 24689 88889999999999998      5688899999999


Q ss_pred             HHHHH--HHHHHhcC--C---------CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc--ccCc
Q 022213          117 KQAVE--VILSVLAR--P---------GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA--DKNT  181 (301)
Q Consensus       117 ~~al~--~~~~~l~~--~---------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  181 (301)
                      ++++.  .+++++++  +         ||+|++++|+|.++...++..|.+++.++++.+   ++|++.|++++  ..++
T Consensus        97 ~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~  173 (423)
T 3ez1_A           97 SLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSV  173 (423)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTE
T ss_pred             HHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCc
Confidence            99998  89999887  8         599999999999999999999999999998643   49999999998  4577


Q ss_pred             cEEEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEccCCcccccCC---CCCCCcccc----CCCCCEEEEecCcc
Q 022213          182 AAMVI-INPGNPCGNVFTYHHLQEIAEMA-RKLRVMVVADEVYGHLTFGS---IPYTPMGLF----GSIVPVITLGSISK  252 (301)
Q Consensus       182 ~~v~l-~~p~nptG~~~~~~~l~~i~~~~-~~~~~~ii~D~~y~~~~~~~---~~~~~~~~~----~~~~~vi~~~s~SK  252 (301)
                      +++++ ++||||||.+++.+++++|+++| ++||+++|+||+|..+.|.+   ..+.++..+    +..+++|+++||||
T Consensus       174 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK  253 (423)
T 3ez1_A          174 KGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK  253 (423)
T ss_dssp             EEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTT
T ss_pred             eEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchh
Confidence            87764 58999999999999999999999 99999999999999766654   222233322    34568999999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      . +++|+|+||++++.        +++.+++.... ...+++++.|.+
T Consensus       254 ~-~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  292 (423)
T 3ez1_A          254 I-TFAGAGLGFVASSE--------DNIRWLSKYLGAQSIGPNKVEQAR  292 (423)
T ss_dssp             T-SCSSSSCEEEEECH--------HHHHHHHHHHHHSCSCCCHHHHHH
T ss_pred             h-ccCCcceEEEEeCH--------HHHHHHHHHHhhhccCCCHHHHHH
Confidence            9 78999999999843        47788877654 345678888765

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=2.1e-32  Score=246.74  Aligned_cols=234  Identities=17%  Similarity=0.307  Sum_probs=191.0

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      .|+|+.|++.    ++.++.+.+++.++++..  ....|++..+ .++|+++++++.+.+|.++++++|++|+|++++++
T Consensus        32 ~idl~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~  106 (369)
T 3cq5_A           32 DIRLNTNENP----YPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ  106 (369)
T ss_dssp             SEECSSCCCC----SCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             ceeccCCCCC----CCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence            4999999862    667889999998887642  2457877655 89999999999887777788899999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .++++++++||+|+++.|+|.++...++..|.+++.++.+  .++.+|++.+++.+++ +++++++++|+||||.+++.+
T Consensus       107 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~  184 (369)
T 3cq5_A          107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD  184 (369)
T ss_dssp             HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence            9999999999999999999999999999999999999864  4567999999998877 889999999999999999976


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC-CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      ++++|++   .+++++|+||+|..+.++   ...+...+..+ +++++.|+||.++++|+|+||+++++        +++
T Consensus       185 ~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~  250 (369)
T 3cq5_A          185 DVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP--------AFI  250 (369)
T ss_dssp             HHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--------HHH
T ss_pred             HHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--------HHH
Confidence            6666666   556999999999987753   11222223345 78999999999999999999999853        477


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++..... .+++.+.|.+
T Consensus       251 ~~l~~~~~~-~~~~~~~~~a  269 (369)
T 3cq5_A          251 DAVMLVRLP-YHLSALSQAA  269 (369)
T ss_dssp             HHHHTTSCT-TCSCHHHHHH
T ss_pred             HHHHHcCCC-CCCCHHHHHH
Confidence            777765542 2466666654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=3.7e-33  Score=263.48  Aligned_cols=215  Identities=21%  Similarity=0.363  Sum_probs=180.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhh-CC-CCCC-CCCEEEcCCHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRD-LP-YKLS-ADDVYVTLGCKQ  118 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~-~~-~~~~-~~~i~~t~g~~~  118 (301)
                      .+|+|+.|.|.    ++ ++.+.+++.+.+...   .|. +..|..++|+++++++... .+ .... +++|++|+|+++
T Consensus       104 ~~i~l~~g~~~----~~-~~~~v~a~~~~~~~~---~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~  175 (533)
T 3f6t_A          104 DAVNYCHTELG----LN-RDKVVAEWVNGAVAN---NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA  175 (533)
T ss_dssp             HHHHHHHHTTC----CC-HHHHHHHHHHHHHTC---SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred             hheeccCCCCC----cC-CcHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence            47999999975    44 455555555565532   455 6789999999999999665 34 4444 479999999999


Q ss_pred             HHHHHHHH-----hcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC--CCCCCCCHHHHHhhcccCccEEEEcCCCC
Q 022213          119 AVEVILSV-----LARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP--ERNWEVDLDAVEALADKNTAAMVIINPGN  191 (301)
Q Consensus       119 al~~~~~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~l~~p~n  191 (301)
                      ++..++.+     ++++||+|+++.|+|.++...++..|.+++.+++..  ++++.+|++.+++.++++++++++++|+|
T Consensus       176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~N  255 (533)
T 3f6t_A          176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTN  255 (533)
T ss_dssp             HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCT
T ss_pred             HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCC
Confidence            99999998     789999999999999999998899999999998865  56788999999999988899999999999


Q ss_pred             CcccCCCHHHHHHHHHHHH-hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          192 PCGNVFTYHHLQEIAEMAR-KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~-~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |||.+++.+++++|+++|+ +|++++|+||+|..+.++.   .++.... .+++|+++||||.++++|+|+||+++++.
T Consensus       256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~~~  330 (533)
T 3f6t_A          256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV-PYNTMLVYSYSKLFGCTGWRLGVIALNEK  330 (533)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS-GGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred             CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC-CCCEEEEecCcccCCCcccceEEEEECcH
Confidence            9999999999999999999 6899999999999988742   2333322 25789999999999999999999999765

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=7.9e-33  Score=249.78  Aligned_cols=215  Identities=23%  Similarity=0.371  Sum_probs=181.5

Q ss_pred             HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH
Q 022213           67 AIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG  146 (301)
Q Consensus        67 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~  146 (301)
                      ++.+.+.... ..|++..|..+||+++++++.     .+++++|++|+|+++|+..++++++++||+|+++.|+|.++..
T Consensus        47 ~~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~  120 (375)
T 3op7_A           47 DFYKKLQGTK-LNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD  120 (375)
T ss_dssp             HHHHHHHTSC-CSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred             HHHHHHhcCC-cCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence            4445555443 479988899999999999873     3678899999999999999999999999999999999999999


Q ss_pred             HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213          147 IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT  226 (301)
Q Consensus       147 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~  226 (301)
                      .++..|.+++.++++.++++.+|++.++++++++++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.
T Consensus       121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~  200 (375)
T 3op7_A          121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS  200 (375)
T ss_dssp             HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCS
T ss_pred             HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            99999999999998766778899999999998899999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccccc
Q 022213          227 FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       227 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                      ++  ....+..  ..++++++.||||.++++|+|+||++++        ++++++++..... ..+++.+.|.+
T Consensus       201 ~~--~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~v~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~  262 (375)
T 3op7_A          201 EL--DVPSIIE--VYDKGIAVNSLSKTYSLPGIRIGWVAAN--------HQVTDILRDYRDYTMICAGVFDDLV  262 (375)
T ss_dssp             SS--CCCCHHH--HCTTEEEEEESSSSSSCGGGCCEEEECC--------HHHHHHHTTTGGGTTSCCCHHHHHH
T ss_pred             cc--CCCchhh--hcCCEEEEeEChhhcCCcccceEEEEeC--------HHHHHHHHHHHhhhccCCCcHHHHH
Confidence            75  2222222  2356799999999999999999999972        3588888776543 33456666543

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.1e-32  Score=244.87  Aligned_cols=222  Identities=17%  Similarity=0.207  Sum_probs=181.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +++++|+|+.|.|    .+++++.+.+++.+.+.  ....|++..+ .++|+++++++      ++++++|++|+|++++
T Consensus        13 ~g~~~id~~~~~~----~~~~~~~v~~a~~~~~~--~~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~g~~~a   79 (350)
T 3fkd_A           13 LSSEIVNFSTTVW----TDGDKDHLEKHLVENLN--CIRHYPEPDA-GTLRQMLAKRN------SVDNNAILVTNGPTAA   79 (350)
T ss_dssp             ---CCEECSCCSC----CCSCCHHHHHHHHHTGG--GGGSCCCTTC-HHHHHHHHHHT------TCCGGGEEEESHHHHH
T ss_pred             ccccEEEccCCCC----CCCCCHHHHHHHHHhHh--HHhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence            4689999999985    36678899999988773  3447888666 89999999998      4678899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeec-CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL-LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      +..+++++.  ||+|+++.|+|.++...++..|.+++.+++ +...+  +++        ++++++++++|+||||.+++
T Consensus        80 l~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~  147 (350)
T 3fkd_A           80 FYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQ  147 (350)
T ss_dssp             HHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCC
Confidence            999999998  999999999999999999999999999998 44333  332        46899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .+++++|++.|+++  ++|+|++|..+.+++...  ...++..+++++++||||.++++|+|+||++++        +++
T Consensus       148 ~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~--------~~~  215 (350)
T 3fkd_A          148 RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN--------KDF  215 (350)
T ss_dssp             HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC--GGGGTTCSSEEEEEESHHHHSCGGGCCEEEECC--------HHH
T ss_pred             HHHHHHHHHhCCCC--EEEEECchhhhccCcchh--hHHhhcCCCEEEEecCchhccCcchheEeEEeC--------HHH
Confidence            99999999988765  999999999988765322  234445568899999999999999999999982        358


Q ss_pred             HHHHHhhhcccCCCccccccc
Q 022213          279 IDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++++.... ..+++.+.|.+
T Consensus       216 ~~~~~~~~~-~~~~~~~~~~~  235 (350)
T 3fkd_A          216 MKRVAAFST-PWAVNALAIEA  235 (350)
T ss_dssp             HHHHHTTCC-TTCSCHHHHHH
T ss_pred             HHHHHHhCC-CCCCCHHHHHH
Confidence            888887655 33566676654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=1.6e-31  Score=237.55  Aligned_cols=223  Identities=17%  Similarity=0.251  Sum_probs=179.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ..+++|+|+.+.+    .+++++.+.+++.+.+..  ...|+. .|..+||+++++++      ++++++|++|+|++++
T Consensus        14 ~~~~~i~l~~n~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~lr~~la~~~------~~~~~~i~~t~G~~~~   80 (337)
T 3p1t_A           14 AAAQAVCLAFNEN----PEAVEPRVQAAIAAAAAR--INRYPF-DAEPRVMRKLAEHF------SCPEDNLMLVRGIDEC   80 (337)
T ss_dssp             CCCCCEECSSCCC----CSCCCHHHHHHHHHHGGG--TTSCCT-THHHHHHHHHHHHH------TSCGGGEEEESHHHHH
T ss_pred             CCCCceEeeCCCC----CCCCCHHHHHHHHHhhhh--hccCCC-CchHHHHHHHHHHh------CcCHHHEEEeCCHHHH
Confidence            4678999999964    267788999999888763  457854 68899999999998      4678899999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..+++++  +||+|+++.|+|.++...++..|.+++.++++.  ++.+|++.+++.  .+++++++++|+||||.+++.
T Consensus        81 l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~  154 (337)
T 3p1t_A           81 FDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSA  154 (337)
T ss_dssp             HHHHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCH
Confidence            99999998  999999999999999999999999999998753  567999999886  367899999999999999996


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++.+|   |+++++ +|+||+|..+.+.+..  .   ....+++++++|+||.++++|+|+||++++.        +++
T Consensus       155 ~~l~~l---~~~~~~-~ivDea~~~~~~~~~~--~---~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~  217 (337)
T 3p1t_A          155 GELDQL---RQRAGK-LLIDETYVDYSSFRAR--G---LAYGENELVFRSFSKSYGLAGLRLGALFGPS--------ELI  217 (337)
T ss_dssp             HHHHHH---HHHCSE-EEEECTTGGGSSCSSS--C---CCCBTTEEEEEESSSTTCCTTTCCEEEECCH--------HHH
T ss_pred             HHHHHH---HHhCCc-EEEECCChhhcccccc--c---cccCCCEEEEeeCchhccCcchheEEEEeCH--------HHH
Confidence            665555   557776 5669999987654321  1   1223568999999999999999999999743        577


Q ss_pred             HHHHhhhcccCCCccccccc
Q 022213          280 DSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~~~~~~~~~~q~~  299 (301)
                      .+++.... ..+++.+.|.+
T Consensus       218 ~~l~~~~~-~~~~~~~~~~a  236 (337)
T 3p1t_A          218 AAMKRKQW-FCNVGTLDLHA  236 (337)
T ss_dssp             HHHHTTSC-TTCSCHHHHHH
T ss_pred             HHHHhhcC-CCCCCHHHHHH
Confidence            77776543 33566666654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.98  E-value=1.3e-31  Score=240.70  Aligned_cols=227  Identities=18%  Similarity=0.323  Sum_probs=180.9

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ++.++|+|+.|+|    .+++++.+.+++.+++...  ....|++. +..++|+++++++      ++++++|++|+|++
T Consensus        24 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~------g~~~~~i~~t~g~~   92 (360)
T 3hdo_A           24 DIASWIKLNTNEN----PYPPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELY------GFDPSWIIMANGSD   92 (360)
T ss_dssp             CCTTSEECSSCCC----SSCCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHH------TCCGGGEEEESSHH
T ss_pred             cccceeeccCCCC----CCCCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHh------CcCcceEEEcCCHH
Confidence            4568999999986    3778899999999988753  14467764 6799999999999      36788999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  197 (301)
                      ++++.++++++++||+|+++.|+|.++...++..|.+++.++++.  ++.+  +++++.+  +++++++++|+||||.++
T Consensus        93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~  166 (360)
T 3hdo_A           93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSF  166 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCc
Confidence            999999999999999999999999999999999999999998843  3334  4444333  467899999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      +.++   +.++|+++|+++|+|++|..+..  .....  ..+..+++++++|+||.++++|+|+||++++        ++
T Consensus       167 ~~~~---l~~l~~~~~~~li~De~~~~~~~--~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~  231 (360)
T 3hdo_A          167 PLEY---IDELARRCAGMLVLDETYAEFAE--SNALE--LVRRHENVVVTRTLSKSYSLAGMRIGLAIAR--------PE  231 (360)
T ss_dssp             CHHH---HHHHHHHBSSEEEEECTTGGGSS--CCCTH--HHHHCSSEEEEEESTTTTSCTTSCCEEEECC--------HH
T ss_pred             CHHH---HHHHHHHCCCEEEEECChHhhCC--cchhH--HhccCCCEEEEecchHhhcCCccceeeEeeC--------HH
Confidence            9555   55566789999999999998642  22222  2233467899999999999999999999973        35


Q ss_pred             HHHHHHhhhcccCCCccccccc
Q 022213          278 IIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++++++..... .+.+.+.|.+
T Consensus       232 ~~~~~~~~~~~-~~~~~~~~~a  252 (360)
T 3hdo_A          232 VIAALDKIRDH-YNLDRLAQAA  252 (360)
T ss_dssp             HHHHHHHHSCS-CCSCHHHHHH
T ss_pred             HHHHHHHhCCC-CCCCHHHHHH
Confidence            88888776553 3567777654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.97  E-value=2.1e-32  Score=248.95  Aligned_cols=226  Identities=19%  Similarity=0.188  Sum_probs=172.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHh--c-CCCCCCCCCCCC-----HHHHHHHHHHHhhhCCCCCCC-CCE
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVR--S-GKFNCYATNSGI-----PPARRAIADYLSRDLPYKLSA-DDV  110 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~--~-~~~~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~i  110 (301)
                      .++++|+|+.|+|+    ++.|+.+.+++.+...  . .....|++..|.     .+||+++|+|+.. +|..+.+ ++|
T Consensus        20 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~i   94 (391)
T 3bwn_A           20 MSDFVVNLDHGDPT----AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV-VGNAATEDRYI   94 (391)
T ss_dssp             TTTSCEECSSCCCG----GGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHH-HCSBCCSSSEE
T ss_pred             CCCCeeEcCCCCCC----CCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHh-cCCCCCCCCeE
Confidence            46789999999974    5556666665533221  1 134579998998     9999999999984 5767776 599


Q ss_pred             EEcCCHHHHHHHHHHHhcCCCC----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213          111 YVTLGCKQAVEVILSVLARPGA----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       111 ~~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      ++|+|+++++..++++++++||    +|++++|+|..|...++..|.+++.++++.+ +  +.        .++++++++
T Consensus        95 ~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l  163 (391)
T 3bwn_A           95 VVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW-G--FD--------KKGPYIELV  163 (391)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST-T--CC--------CCSCEEEEE
T ss_pred             EEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH-H--cC--------CCCCEEEEE
Confidence            9999999999999999999999    9999999999999999999999888876432 2  22        246888999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||||||.+++     +|++.+++++++||+|++|..    + ...++..  ..+++|+++||||.|+++|+|+||+++
T Consensus       164 ~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~~~~l~~--~~~~~i~~~S~SK~~g~~GlRiG~~~~  231 (391)
T 3bwn_A          164 TSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-HYTPITR--RQDHDIMLFTFSKITGHAGSRIGWALV  231 (391)
T ss_dssp             ESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----T-TTSCCCC--CBCCSEEEEEHHHHHSCGGGCEEEEEE
T ss_pred             CCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-CCCcccc--CCCCeEEEEechhhcCCCccceEEEEe
Confidence            999999999997     355522333499999999974    1 2223332  345789999999999999999999987


Q ss_pred             eCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          267 NDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++       ++++++++.... ...+++.+.|.++
T Consensus       232 ~~-------~~l~~~l~~~~~~~~~~~~~~~q~a~  259 (391)
T 3bwn_A          232 KD-------KEVAKKMVEYIIVNSIGVSKESQVRT  259 (391)
T ss_dssp             CC-------HHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             cC-------HHHHHHHHHHhcccccCCCHHHHHHH
Confidence            33       257788877654 3457888888753

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.97  E-value=2.5e-31  Score=236.68  Aligned_cols=222  Identities=21%  Similarity=0.321  Sum_probs=177.8

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      +++|+|+.|.+.    +++++.+.+++.+.+.......|+. .+..++|+++++++.+.   .+++++|++|+|++++++
T Consensus        19 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~   90 (335)
T 1uu1_A           19 RDKTYLALNENP----FPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIY   90 (335)
T ss_dssp             CCSEEESSCCCS----SCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHH
T ss_pred             CcceECCCCCCC----CCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHH
Confidence            468999999853    5678899999988773333446866 47999999999999542   357789999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          122 VILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      .+++++   ||+|+++ |+|.++...++..|.+++.++++  .++.+|++.+     ++++++++++||||||.+++.++
T Consensus        91 ~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~  159 (335)
T 1uu1_A           91 VMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE  159 (335)
T ss_dssp             HHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence            999998   8999999 99999999999999999988874  3456777766     46888989999999999999888


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDS  281 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~  281 (301)
                      +++|++.|   | ++|+||+|..+.+.  ..  +..++..+++++++|+||.++++|+|+||++++        ++++++
T Consensus       160 l~~l~~~~---~-~li~De~~~~~~~~--~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~~~  223 (335)
T 1uu1_A          160 IERILKTG---A-FVALDEAYYEFHGE--SY--VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS--------EKFIDA  223 (335)
T ss_dssp             HHHHHHTT---C-EEEEECTTHHHHCC--CC--GGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC--------HHHHHH
T ss_pred             HHHHHHhC---C-EEEEECcchhhcch--hH--HHHhhhCCCEEEEecchhhcCCcccCeEEEEeC--------HHHHHH
Confidence            88888876   7 89999999986642  11  222344457899999999999999999999983        257777


Q ss_pred             HHhhhcccCCCccccccc
Q 022213          282 IKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       282 ~~~~~~~~~~~~~~~q~~  299 (301)
                      ++..... .+++.++|.+
T Consensus       224 l~~~~~~-~~~~~~~~~~  240 (335)
T 1uu1_A          224 YNRVRLP-FNVSYVSQMF  240 (335)
T ss_dssp             HHHHSCT-TCSCHHHHHH
T ss_pred             HHHhcCC-CCcCHHHHHH
Confidence            7765542 3667777765

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.97  E-value=1.4e-31  Score=246.27  Aligned_cols=224  Identities=16%  Similarity=0.158  Sum_probs=179.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCC-C---CHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNS-G---IPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~-g---~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ...+|+|+.|+|.    ++.++.+.+++.+.+....  ...|++.. |   ..+||+++++|+.+..+..+++++|++|+
T Consensus        55 ~~~~i~l~~g~~~----~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~  130 (427)
T 2hox_A           55 QGCSADVASGDGL----FLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (427)
T ss_dssp             TTCCEECCSCCCG----GGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCceEEecCcCCC----CCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence            5578999999974    6667788888887763222  23498887 8   99999999999988766667899999999


Q ss_pred             CHHHHHHHHHHHh--------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213          115 GCKQAVEVILSVL--------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       115 g~~~al~~~~~~l--------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      |+++++..+++++        +++||.|+++.|+|..|...++..|.+++.        +.+|++.|++.++++++++++
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~k~v~l  202 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMV  202 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEE
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCceEEEE
Confidence            9999999999999        899999999999999999999999988764        336788888888778899999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||||||.+++ +.       ++  ++..|.|+.|.+      ...++..+. .+++|+++||||.++++|+|+||+++
T Consensus       203 ~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~------~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~  265 (427)
T 2hox_A          203 TSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW------PHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALI  265 (427)
T ss_dssp             ESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS------TTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEE
T ss_pred             cCCCCCcccccH-HH-------Hc--CCCEEEeecccC------CCCCccccC-CCceEEEEeChhcCCCCCceEEEEEE
Confidence            999999999999 42       22  456777777642      223333333 45789999999999999999999998


Q ss_pred             eCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          267 NDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      ++       ++++++++.... ...+++.+.|.++
T Consensus       266 ~~-------~~l~~~l~~~~~~~~~~~~~~~q~a~  293 (427)
T 2hox_A          266 KD-------ESVYNNLLNYMTKNTEGTPRETQLRS  293 (427)
T ss_dssp             CC-------HHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             CC-------HHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            54       258888887754 3457888888753

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.96  E-value=4.1e-29  Score=227.25  Aligned_cols=230  Identities=17%  Similarity=0.131  Sum_probs=181.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      ++++|+|+.|+|   +.+++++.+.+++.+.++..  ....|.+..|..++++++++++.+.++    .+++++|+|+++
T Consensus        42 g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~~~ggt~  114 (398)
T 3a2b_A           42 GRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAILFSTGFQ  114 (398)
T ss_dssp             TEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEEESSHHH
T ss_pred             CceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECCHHH
Confidence            567899999986   24557788999998887642  233466667888899999998887655    358999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCCCCCcc
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINPGNPCG  194 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG  194 (301)
                      ++..++++++++||.|+++.|+|..+...++..|.+++.++.       .|++.+++.+++    +++++++++|+||||
T Consensus       115 a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG  187 (398)
T 3a2b_A          115 SNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEG  187 (398)
T ss_dssp             HHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTC
T ss_pred             HHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCC
Confidence            999999999999999999999999999999999999998875       588999998866    678899999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEeeCCCCcc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTNDPNGIF  273 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~  273 (301)
                      .+++   +++|+++|++||+++|+||+|+.+.++.........++..++ .++++|+||.++.+|   ||++++.     
T Consensus       188 ~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~-----  256 (398)
T 3a2b_A          188 DIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDA-----  256 (398)
T ss_dssp             CBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECH-----
T ss_pred             CccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCH-----
Confidence            9998   889999999999999999999988764221111122222234 499999999999878   9999842     


Q ss_pred             cchhHHHHHHhh-hc-ccCCCcccccc
Q 022213          274 QKSGIIDSIKDC-LS-IYSDIPTFIQV  298 (301)
Q Consensus       274 ~~~~~~~~~~~~-~~-~~~~~~~~~q~  298 (301)
                         +++++++.. .. ...+++.+.|.
T Consensus       257 ---~~~~~l~~~~~~~~~~~~~~~~~~  280 (398)
T 3a2b_A          257 ---DVIDFLKHNARSVMFSASMTPASV  280 (398)
T ss_dssp             ---HHHHHHHHHCHHHHSSBCCCHHHH
T ss_pred             ---HHHHHHHHhcccceecCCCCHHHH
Confidence               477777664 22 23345556664

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.96  E-value=1.8e-27  Score=217.33  Aligned_cols=217  Identities=14%  Similarity=0.073  Sum_probs=169.2

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHh---c-CCCCCCCCCCCCH---HHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVR---S-GKFNCYATNSGIP---PARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~---~-~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ...++.|+|+    ++.+..+.+++.+.++   . .....|+. .|.+   ++++++++++.      .  +++++++|+
T Consensus        20 ~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g   86 (404)
T 1e5e_A           20 DQFGAAIPPI----YQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSG   86 (404)
T ss_dssp             CTTCCSSCCC----CCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSH
T ss_pred             CCCCCcCCCC----cCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCCh
Confidence            3578888875    4444444444444332   2 23446777 5666   89999999982      2  478888888


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNP  192 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np  192 (301)
                      ++++..++++++++||+|+++.|.|.++..    .++..|++++++++.       |++.+++.++++++++++++|+||
T Consensus        87 ~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~Np  159 (404)
T 1e5e_A           87 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANP  159 (404)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTT
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCC
Confidence            999999999999999999999999998877    678899999998763       778999999888999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHh-CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee-EEEEeeCCC
Q 022213          193 CGNVFTYHHLQEIAEMARK-LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPN  270 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~  270 (301)
                      ||.+++   +++|+++|++ +|+++|+|++|..+.+..    ++ .+   +..+++.|+||.|+++|+|+ ||+++++  
T Consensus       160 tG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~----~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~--  226 (404)
T 1e5e_A          160 TLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN----PV-DF---GVDVVVHSATKYINGHTDVVAGLICGKA--  226 (404)
T ss_dssp             TCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECH--
T ss_pred             CCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC----cc-cc---CCEEEEEcCccccCCCCCCeEEEEEECH--
Confidence            999998   8999999999 999999999999877641    22 12   35699999999999999998 9999854  


Q ss_pred             CcccchhHHH-HHHhhhcc--cCCCccccccc
Q 022213          271 GIFQKSGIID-SIKDCLSI--YSDIPTFIQVC  299 (301)
Q Consensus       271 ~~~~~~~~~~-~~~~~~~~--~~~~~~~~q~~  299 (301)
                            +++. +++.....  ..+.+++.|.+
T Consensus       227 ------~~~~~~l~~~~~~~~g~~~~~~~~~~  252 (404)
T 1e5e_A          227 ------DLLQQIRMVGIKDITGSVISPHDAWL  252 (404)
T ss_dssp             ------HHHHHHHHTCCCCCCCCCCCHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence                  3555 77665442  33456666543

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.95  E-value=1.7e-27  Score=217.46  Aligned_cols=211  Identities=15%  Similarity=0.228  Sum_probs=169.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC------CCCCCC--CCCCHHHHHHHHHHHhhhCCCCC-CCCCEEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK------FNCYAT--NSGIPPARRAIADYLSRDLPYKL-SADDVYV  112 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~  112 (301)
                      +++|+|+.|.+.     +.|+.+.+++.+.+....      ...|++  ..+..++|+++++++.      . ++++|++
T Consensus        27 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~------~~~~~~v~~   95 (420)
T 1t3i_A           27 HPLVYLDNAATS-----QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVY   95 (420)
T ss_dssp             EECEECBTTTCC-----CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEE
T ss_pred             CceEEecCCccC-----CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEEE
Confidence            458999999863     456889999988886421      223543  3567889999999983      3 5689999


Q ss_pred             cCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          113 TLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       113 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      |+|+++|+..+++++    +++||+|+++.|+|.+    +...++..|.+++.++++  .++.+|++.+++.++++++++
T Consensus        96 ~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v  173 (420)
T 1t3i_A           96 TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLV  173 (420)
T ss_dssp             ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEE
T ss_pred             cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEE
Confidence            999999999999999    8999999999999998    566677889999999875  456689999999998889999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++++|+||||.+++   +++|.++|+++|+++|+|++|.....    ...+..+   +..+++.|+||.++.+|  +||+
T Consensus       174 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~~---~~di~~~s~sK~~~~~g--~G~~  241 (420)
T 1t3i_A          174 TVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----PLDVQLI---DCDWLVASGHKMCAPTG--IGFL  241 (420)
T ss_dssp             EEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHH---TCSEEEEEGGGTTSCTT--CEEE
T ss_pred             EEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc----cCchhhc---CCCEEEEehhhhcCCCc--eEEE
Confidence            99999999999999   88999999999999999999986432    1122222   24589999999888777  9999


Q ss_pred             EeeCCCCcccchhHHHHHHhh
Q 022213          265 VTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ++++        +++++++..
T Consensus       242 ~~~~--------~~~~~~~~~  254 (420)
T 1t3i_A          242 YGKE--------EILEAMPPF  254 (420)
T ss_dssp             EECH--------HHHHHSCCC
T ss_pred             EEch--------HHHhhcCce
Confidence            9843        466666544

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.95  E-value=3e-27  Score=212.49  Aligned_cols=205  Identities=14%  Similarity=0.139  Sum_probs=160.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHH-HHHHHhhhCCCCCCCCCEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRA-IADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~~~i~  111 (301)
                      .++++.|+.|.+.    .++++.+.+++.+.+....        ...|.+..+..++|++ +++++.      .+  +|+
T Consensus         6 ~~~~i~ld~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~   73 (371)
T 2e7j_A            6 TKDFINIDPLQTG----GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VAR   73 (371)
T ss_dssp             --CCEECCHHHHT----CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEE
T ss_pred             CCCcEEecccccC----CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEE
Confidence            5678999987642    4567889999888775421        1234456788999999 999983      23  999


Q ss_pred             EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-----cCccEEEE
Q 022213          112 VTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-----KNTAAMVI  186 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l  186 (301)
                      +|+|+++++..++++++++||+|++++|+|.++...++..|.+++.++...+.++.+|++.+++.++     ++++++++
T Consensus        74 ~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~  153 (371)
T 2e7j_A           74 VTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALI  153 (371)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             EeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEE
Confidence            9999999999999999999999999999999998889999999999982223346799999999887     67889999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++|+||||.+++   +++|+++|++||+++|+|++|......    .++..++.   .++++|+||+++.++ |+||+++
T Consensus       154 ~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~---di~~~s~sK~~~~~~-~~G~~~~  222 (371)
T 2e7j_A          154 TYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIGA---DFIVGSGHKSMAASG-PIGVMGM  222 (371)
T ss_dssp             ESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHTC---SEEEEEHHHHSSCCS-SCEEEEE
T ss_pred             ECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC----CChhhcCC---CEEEecCCcCCCCCC-CcEEEEE
Confidence            999999999999   688999999999999999999985432    22333322   389999999977654 9999998


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      ++
T Consensus       223 ~~  224 (371)
T 2e7j_A          223 KE  224 (371)
T ss_dssp             CT
T ss_pred             ec
Confidence            65

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.94  E-value=3.4e-26  Score=206.87  Aligned_cols=225  Identities=13%  Similarity=0.108  Sum_probs=166.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-CC---CCCC--CCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-GK---FNCY--ATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-~~---~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +..+|+|+.|++   +.+++++.+.+++.+.++. +.   ...|  +...+..++|+++++++      +++ + .++++
T Consensus        38 g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~------g~~-~-~i~~~  106 (384)
T 1bs0_A           38 DRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL------GYS-R-ALLFI  106 (384)
T ss_dssp             TEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH------TCS-E-EEEES
T ss_pred             CceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh------CCC-c-EEEeC
Confidence            567899999874   2355678899999888764 21   1123  44456789999999998      233 4 44555


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC---ccEEEEcCCCC
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN---TAAMVIINPGN  191 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~n  191 (301)
                      ++++++..++++++++||.|+++.|+|..+...++..|.+++.++.       .|++.+++.+++.   ++++++++|+|
T Consensus       107 sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~n  179 (384)
T 1bs0_A          107 SGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFS  179 (384)
T ss_dssp             CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred             CcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5589999999999999999999999999998899999999988874       5789999888653   67788899999


Q ss_pred             CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCC
Q 022213          192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNG  271 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~  271 (301)
                      |||.+++   +++|+++|++||+++|+|++|+.+.++.........++.. ..++++|+||.++.+|   ||++++.   
T Consensus       180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~di~~~s~sK~~~~~G---G~~~~~~---  249 (384)
T 1bs0_A          180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVK-PELLVVTFGKGFGVSG---AAVLCSS---  249 (384)
T ss_dssp             TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCC-CSEEEEESSSTTSSCC---EEEEECH---
T ss_pred             CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCC-CcEEEeeccchhhccC---cEEEeCH---
Confidence            9999999   8889999999999999999998765531111111222222 2399999999998777   9999842   


Q ss_pred             cccchhHHHHHHhhh-cc--cCCCcccccc
Q 022213          272 IFQKSGIIDSIKDCL-SI--YSDIPTFIQV  298 (301)
Q Consensus       272 ~~~~~~~~~~~~~~~-~~--~~~~~~~~q~  298 (301)
                           +++++++... ..  ..+.+.+.|.
T Consensus       250 -----~~~~~l~~~~~~~~~~~~~~~~~~~  274 (384)
T 1bs0_A          250 -----TVADYLLQFARHLIYSTSMPPAQAQ  274 (384)
T ss_dssp             -----HHHHHHHHHCHHHHSSBCCCHHHHH
T ss_pred             -----HHHHHHHHhchhhhcCCCCCHHHHH
Confidence                 4777776642 21  2235555554

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.94  E-value=2e-26  Score=209.12  Aligned_cols=214  Identities=13%  Similarity=0.092  Sum_probs=159.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC----CCC--CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK----FNC--YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~--Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +..+|+|+.|+|.   .+..++.+.+++.+.+....    ...  |+...+..++|+.+++++.      .+ +.|+++ 
T Consensus        42 g~~~id~~~~~~~---g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~~-~~i~~~-  110 (399)
T 3tqx_A           42 EKEVLNFCANNYL---GLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------TD-DTILYS-  110 (399)
T ss_dssp             TEEEEECSSCCTT---SCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------CS-EEEEES-
T ss_pred             CeeEEEeeccCcc---cccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------CC-cEEEEC-
Confidence            4568999999752   24567888898888876411    111  2233336788999998882      22 445555 


Q ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcC
Q 022213          115 GCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~  188 (301)
                      ++++++..++.+++++||.|+++.|+|..+...++..|.+++.++.       .|++.+++.+++      +++++++++
T Consensus       111 sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~  183 (399)
T 3tqx_A          111 SCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDG  183 (399)
T ss_dssp             CHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred             chHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence            5578999999999999999999999999999999999999998875       466788887765      788999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+||||.+++   +++|+++|++||+++|+|++|+...++.........++. ....++++|+||+++  |.+.||++++
T Consensus       184 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~  258 (399)
T 3tqx_A          184 VFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH  258 (399)
T ss_dssp             EETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC
T ss_pred             CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC
Confidence            9999999999   889999999999999999999743333222111222221 234599999999987  4455999974


Q ss_pred             CCCCcccchhHHHHHHhh
Q 022213          268 DPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~  285 (301)
                      .        ++++.++..
T Consensus       259 ~--------~~~~~~~~~  268 (399)
T 3tqx_A          259 K--------EIIEWLRNR  268 (399)
T ss_dssp             H--------HHHHHHHHH
T ss_pred             H--------HHHHHHHHh
Confidence            3        477777665

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.94  E-value=1.5e-26  Score=209.79  Aligned_cols=197  Identities=13%  Similarity=0.117  Sum_probs=158.4

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLP  137 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~  137 (301)
                      +.++.+.+++.+.+..    .|++.  ..++++++++++.+.+|.  +++ +|++|+|++++++.++++++++||+|+++
T Consensus        44 ~~~~~v~~a~~~~~~~----~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~  115 (393)
T 1vjo_A           44 NAHPSVLQAMNVSPVG----HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGDVVLIG  115 (393)
T ss_dssp             CCCHHHHHHHSSCCCC----TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCHHHHHHHhccccc----ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCCEEEEE
Confidence            4567777777655431    46542  457788888888776663  567 89999999999999999999999999999


Q ss_pred             CCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 022213          138 RPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV  214 (301)
Q Consensus       138 ~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~  214 (301)
                      +|+|.+  +...++..|.+++.++++.  ++.+|++.|++.+++ +++++++++|+||||.+++   +++|+++|+++|+
T Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~  190 (393)
T 1vjo_A          116 VAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREFGT  190 (393)
T ss_dssp             ESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTC
T ss_pred             cCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHcCC
Confidence            999998  8888899999999998854  456899999999987 8899999999999999998   8899999999999


Q ss_pred             eEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       215 ~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      ++|+|++|..   +. .+..+.   ..+..+++.|+||+++.+| |+||+++++        +++++++.
T Consensus       191 ~li~Dea~~~---g~-~~~~~~---~~~~di~~~s~sK~l~~~~-~~G~l~~~~--------~~~~~~~~  244 (393)
T 1vjo_A          191 LLLVDTVTSL---GG-VPIFLD---AWGVDLAYSCSQKGLGCSP-GASPFTMSS--------RAIEKLQR  244 (393)
T ss_dssp             EEEEECTTTT---TT-SCCCTT---TTTCSEEECCSSSTTCSCS-SCEEEEECH--------HHHHHHHT
T ss_pred             EEEEECCccc---cC-cCCccc---ccCccEEEEcCcccccCCC-ceEEEEECH--------HHHHHHhc
Confidence            9999999993   21 222222   2234589999999989888 999999843        46666643

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.94  E-value=4.5e-26  Score=205.48  Aligned_cols=200  Identities=17%  Similarity=0.156  Sum_probs=157.9

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--C---C--CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--F---N--CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~---~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +.|+.+..     .++++.+.+++.+.+....  .   .  .|....+..++|+++++++      ++++++|++|+|++
T Consensus         3 ~yld~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t   71 (384)
T 1eg5_A            3 VYFDNNAT-----TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCAT   71 (384)
T ss_dssp             EECBTTTC-----CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHH
T ss_pred             EEEecCcc-----CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEECCHH
Confidence            55666653     2567889999998886420  0   0  0122234578999999998      35678999999999


Q ss_pred             HHHHHHHHHhc----CCCCEEEEcCCCCcchHHHH---HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          118 QAVEVILSVLA----RPGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       118 ~al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      +++..+++++.    ++||+|+++.|+|+++...+   +..|.+++.++++.  ++.+|+++|++.++++++++++++|+
T Consensus        72 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~  149 (384)
T 1eg5_A           72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAAN  149 (384)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBC
T ss_pred             HHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCC
Confidence            99999999998    79999999999999875555   67899999988753  45689999999998888999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCC--CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLR--VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~--~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ||||.+++   +++|.++|+++|  +++|+|++|+.   +. .+..+..+   +..+++.|+||.++.+|  +||+++++
T Consensus       150 nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~~---~~-~~~~~~~~---~~di~~~s~sK~~g~~G--~G~~~~~~  217 (384)
T 1eg5_A          150 NEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI---GK-IPFSLEKL---EVDYASFSAHKFHGPKG--VGITYIRK  217 (384)
T ss_dssp             TTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT---TT-SCCCCTTT---CCSEEEEEGGGGTSCTT--CEEEEECT
T ss_pred             CCcccccC---HHHHHHHHHhcCCceEEEEEhhhhc---CC-cccCchhc---CCCEEEecHHHhcCCCc--eEEEEEcC
Confidence            99999999   788888999999  99999999983   22 12223222   34589999999988888  79999865


Q ss_pred             C
Q 022213          269 P  269 (301)
Q Consensus       269 ~  269 (301)
                      .
T Consensus       218 ~  218 (384)
T 1eg5_A          218 G  218 (384)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.94  E-value=1.5e-25  Score=205.56  Aligned_cols=212  Identities=15%  Similarity=0.155  Sum_probs=171.4

Q ss_pred             CCCCCee--eccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           39 NDPRPVV--PLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        39 ~~~~~~i--~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ..+.+++  +|+.|+|.    ++.|+.+.+++.+.++..   .|++ ..+..++|+++++++.        .+++++|+|
T Consensus        11 ~gg~~~~~~~l~~~~p~----~~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~g   75 (424)
T 2po3_A           11 FGGPAAFDQPLLVGRPN----RIDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAG--------VRHAVATCN   75 (424)
T ss_dssp             GTCCCSCSSCEETTCCC----CCCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESC
T ss_pred             hcCCccccccccccCCC----CCChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCC
Confidence            3455555  68889864    677889999999888753   4776 6788999999999993        258999999


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCccc
Q 022213          116 CKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN  195 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  195 (301)
                      ++++++.+++++. +||+|+++.|+|.++...+...|.+++.+++++ +++.+|++.+++.+++++++++++   ||||.
T Consensus        76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~  150 (424)
T 2po3_A           76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGV---HLWGR  150 (424)
T ss_dssp             HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred             HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence            9999999999985 789999999999999999999999999999864 356789999999998788888875   48999


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCccc
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ  274 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~  274 (301)
                      ..+   +++|+++|+++|+++|+|++|. .+.+++.   ++..+.   + +++.||||..+++|.|+||+++++      
T Consensus       151 ~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~---d-i~~~S~sk~K~l~~~~~G~~v~~~------  214 (424)
T 2po3_A          151 PCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLG---D-AEVFSFHATKAVNAFEGGAVVTDD------  214 (424)
T ss_dssp             CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS---S-EEEEECCTTSSSCCSSCEEEEESC------
T ss_pred             cCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---eccccc---C-EEEEeCCCCCCccCCCCeEEEeCC------
Confidence            877   8889999999999999999999 4666542   222222   2 899999977677789999999853      


Q ss_pred             chhHHHHHHhhhc
Q 022213          275 KSGIIDSIKDCLS  287 (301)
Q Consensus       275 ~~~~~~~~~~~~~  287 (301)
                       ++++++++....
T Consensus       215 -~~l~~~l~~~~~  226 (424)
T 2po3_A          215 -ADLAARIRALHN  226 (424)
T ss_dssp             -HHHHHHHHHHHB
T ss_pred             -HHHHHHHHHHHh
Confidence             247777766543

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.94  E-value=1.6e-26  Score=209.93  Aligned_cols=211  Identities=17%  Similarity=0.232  Sum_probs=166.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCC------CCCCCCCHHHHHHHHHHHhhhCCCCC-CCCCEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNC------YATNSGIPPARRAIADYLSRDLPYKL-SADDVY  111 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~------Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~  111 (301)
                      +++++.|+.+.+.     +.|+.+.+++.+.+....  ...      |.+..+..++|+++++++.      . ++++|+
T Consensus        21 g~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~   89 (406)
T 1kmj_A           21 GLPLAYLDSAASA-----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN------ARSAEELV   89 (406)
T ss_dssp             TEECEECCTTTCC-----CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEE
T ss_pred             CCceEEecCCccC-----CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEE
Confidence            3568999999864     356788999988887431  111      1234467789999999883      3 568999


Q ss_pred             EcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE
Q 022213          112 VTLGCKQAVEVILSVL----ARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA  183 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (301)
                      +|+|+++++..+++++    +++||+|+++.|+|++.    ...++..|.+++.++++.  ++.+|++.+++.+++++++
T Consensus        90 ~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~  167 (406)
T 1kmj_A           90 FVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRL  167 (406)
T ss_dssp             EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEE
T ss_pred             EeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeE
Confidence            9999999999999999    89999999999998754    344667899999998753  4568999999999888999


Q ss_pred             EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          184 MVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       184 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +++++|+||||.+++   +++|+++|++||+++|+|++|.....    +..+..+   +..++++|+||.++.+|  +||
T Consensus       168 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~----~~~~~~~---~~d~~~~s~~K~~g~~G--~G~  235 (406)
T 1kmj_A          168 LAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH----PVDVQAL---DCDFYVFSGHKLYGPTG--IGI  235 (406)
T ss_dssp             EEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHH---TCSEEEEEGGGTTSCTT--CEE
T ss_pred             EEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC----CCccccc---CCCEEEEEchhccCCCC--cEE
Confidence            999999999999999   88999999999999999999986321    1122222   34589999999998888  899


Q ss_pred             EEeeCCCCcccchhHHHHHHh
Q 022213          264 LVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      ++++.        +++++++.
T Consensus       236 ~~~~~--------~~~~~~~~  248 (406)
T 1kmj_A          236 LYVKE--------ALLQEMPP  248 (406)
T ss_dssp             EEECH--------HHHHHCCC
T ss_pred             EEEeH--------HHHhhcCC
Confidence            99842        46666654

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.94  E-value=4.3e-26  Score=206.18  Aligned_cols=205  Identities=17%  Similarity=0.103  Sum_probs=161.8

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-C--C---CCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-F--N---CYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~--~---~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++++.|+.+.+     .+.|+.+.+++.+.+.... .  .   .|+. ..+..++|+.+++++      ++++++|++|+
T Consensus        15 ~~~i~l~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~------g~~~~~v~~~~   83 (390)
T 1elu_A           15 ANKTYFNFGGQ-----GILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITD   83 (390)
T ss_dssp             TTSEECCTTTC-----CCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEES
T ss_pred             CCeEEecCCcc-----CCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc------CCCHHHEEEeC
Confidence            46899998864     2456788888888776421 0  0   2433 246788999999998      35678999999


Q ss_pred             CHHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCC
Q 022213          115 GCKQAVEVILSVL-ARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINP  189 (301)
Q Consensus       115 g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  189 (301)
                      |++++++.+++++ +++||+|+++.|+|.++...    ++..|.+++.++++.++++.+|++.+++.++++++++++++|
T Consensus        84 g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~  163 (390)
T 1elu_A           84 NVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHL  163 (390)
T ss_dssp             SHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESB
T ss_pred             ChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEecc
Confidence            9999999999999 79999999999999987543    466799999998754356779999999999888899999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHH----hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          190 GNPCGNVFTYHHLQEIAEMAR----KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~----~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +||||.+++   +++|.++|+    ++|+++|+|++|....    ....+.   .....+++.|+||. ..+|.|+||++
T Consensus       164 ~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~----~~~~~~---~~~~d~~~~s~~K~-~~~~~g~G~~~  232 (390)
T 1elu_A          164 LWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS----LPLDFS---RLEVDYYAFTGHKW-FAGPAGVGGLY  232 (390)
T ss_dssp             CTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT----BCCCTT---TSCCSEEEEESSST-TCCCTTCEEEE
T ss_pred             ccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC----cCCChh---hcCCCEEEcccccc-ccCCCceEEEE
Confidence            999999999   888899999    9999999999998522    111222   22345889999994 45667799999


Q ss_pred             eeC
Q 022213          266 TND  268 (301)
Q Consensus       266 ~~~  268 (301)
                      +++
T Consensus       233 ~~~  235 (390)
T 1elu_A          233 IHG  235 (390)
T ss_dssp             ECT
T ss_pred             ECH
Confidence            864

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.93  E-value=2.9e-26  Score=206.61  Aligned_cols=229  Identities=14%  Similarity=0.089  Sum_probs=165.4

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSG--KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ++..+++|+.|.|..  .++ +++.+.+++.+.++..  ....|+. .+..++++++++++    |  + +++|++|+|+
T Consensus        26 ~g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~l~~~la~~~----g--~-~~~v~~~~g~   95 (375)
T 2eh6_A           26 EGKEYLDFVSGIGVN--SLGHAYPKLTEALKEQVEKLLHVSNLYEN-PWQEELAHKLVKHF----W--T-EGKVFFANSG   95 (375)
T ss_dssp             TCCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHHHCSCCCTTBCC-HHHHHHHHHHHHTS----S--S-CEEEEEESSH
T ss_pred             CCCEEEEcCCccccc--ccCCCCHHHHHHHHHHHHhccccCcccCC-HHHHHHHHHHHhhc----C--C-CCeEEEeCch
Confidence            467899999997631  255 6788999999888642  1235643 46788999999886    2  3 3899999999


Q ss_pred             HHHHHHHHHH---hc---CCC-CEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHHhh
Q 022213          117 KQAVEVILSV---LA---RPG-ANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVEAL  176 (301)
Q Consensus       117 ~~al~~~~~~---l~---~~g-d~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~~~  176 (301)
                      ++++..++++   +.   ++| |+|++++|+|+++...+...+..             +..++.       .|+++|++.
T Consensus        96 t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~  168 (375)
T 2eh6_A           96 TESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKL  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHH
Confidence            9999999975   35   788 99999999999875544443321             222221       589999999


Q ss_pred             cccCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213          177 ADKNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL  255 (301)
Q Consensus       177 ~~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~  255 (301)
                      ++++++++++++|+||||.+ .+.+++++|+++|++||+++|+|++|.++.+.+. ...+..++...+++   ||||.++
T Consensus       169 l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~d~~---s~SK~~~  244 (375)
T 2eh6_A          169 LDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNLKPDVI---ALAKGLG  244 (375)
T ss_dssp             CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE---EECGGGG
T ss_pred             hcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-chhhhhcCCCCCEE---EEccccc
Confidence            98888999999999999999 5688999999999999999999999997654332 22333333223444   8889988


Q ss_pred             CCcceeEEEEeeCCCCcccchhHHHHHHhhh-cccCCCcccccc
Q 022213          256 VPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL-SIYSDIPTFIQV  298 (301)
Q Consensus       256 ~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~  298 (301)
                       +|+|+||+++++        +++++++... ....+.+.+.|.
T Consensus       245 -~g~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  279 (375)
T 2eh6_A          245 -GGVPIGAILARE--------EVAQSFTPGSHGSTFGGNPLACR  279 (375)
T ss_dssp             -TTSCCEEEEEEH--------HHHTTCCTTSCCCSSTTCHHHHH
T ss_pred             -CCCCeEEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHH
Confidence             699999999854        3555555421 122244555554

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.2e-25  Score=202.93  Aligned_cols=190  Identities=14%  Similarity=0.101  Sum_probs=152.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR  138 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~  138 (301)
                      +.++.+.+++.+.+.    ..|++.  ..++++++++++.+.+|.. +++++++|+|+++|+..++++++++||+|+++.
T Consensus        30 ~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~  102 (386)
T 2dr1_A           30 ACFPEVLEIMKVQMF----SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTI  102 (386)
T ss_dssp             CCCHHHHHHTTSCCC----CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCcHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEc
Confidence            445667666654432    245442  3678888888887766654 467899999999999999999999999999999


Q ss_pred             CCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc--ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 022213          139 PGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA--DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV  214 (301)
Q Consensus       139 p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~  214 (301)
                      |+|.+  +...++..|.+++.++++.  ++.+|++.|++.+  .++++++++++|+||||.+.+   +++|+++|++||+
T Consensus       103 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~  177 (386)
T 2dr1_A          103 IGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDK  177 (386)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTC
T ss_pred             CCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCC
Confidence            99998  8888889999999998754  4569999999988  457899999999999999998   8999999999999


Q ss_pred             eEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       215 ~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++|+|++|+.+.+.    .++..   .+..++++|+||++++++ ++||+++++
T Consensus       178 ~li~D~a~~~~~~~----~~~~~---~~~di~~~s~sK~~~~~~-g~G~~~~~~  223 (386)
T 2dr1_A          178 LVFVDAVSAMGGAD----IKFDK---WGLDVVFSSSQKAFGVPP-GLAIGAFSE  223 (386)
T ss_dssp             EEEEECTTTBTTBC----CCTTT---TTCSEEEEETTSTTCCCS-SCEEEEECH
T ss_pred             eEEEEccccccCcc----ccccc---cCCcEEEEeccccccCCC-ceEEEEECH
Confidence            99999999975542    12222   234599999999988763 399999853

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.93  E-value=3.3e-25  Score=201.80  Aligned_cols=217  Identities=17%  Similarity=0.170  Sum_probs=157.1

Q ss_pred             eeccCCCCCCCCCCCChHHHHHHHHHHHh---c-CCCCCCC--CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           45 VPLGYGDPTAFPCFRTAVEAEDAIVDAVR---S-GKFNCYA--TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        45 i~l~~g~p~~~p~~~~~~~~~~~~~~~~~---~-~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      -.++.|+|+    +..+..+.+++.+++.   . .....|.  +..+..++++.+++++    +  .  +++++++++++
T Consensus        23 ~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~--~~~i~~~sG~~   90 (398)
T 2rfv_A           23 STGALSTPI----FQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----R--G--EAGLATASGIS   90 (398)
T ss_dssp             TTCCSSCCC----CCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----T--C--SEEEEESSHHH
T ss_pred             CCCCcCCCC----cCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----C--C--CcEEEECCHHH
Confidence            357788765    3333333333333332   1 1222343  2234567777777777    2  2  25666666779


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcc
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCG  194 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  194 (301)
                      ++..++++++++||+|+++.|+|.++...+    +..|.+++.++.       .|++.+++.++++++++++++|+||||
T Consensus        91 a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG  163 (398)
T 2rfv_A           91 AITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMRPETKVVYIETPANPTL  163 (398)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCCTTEEEEEEESSBTTTT
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcCCCCeEEEEECCCCCCC
Confidence            999999999999999999999999887665    778999998876       289999999988899999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIF  273 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~  273 (301)
                      .+++   +++|+++|++||+++|+|++|....+..    ++ .+   +..+++.|+||.++++|.|+ ||+++++     
T Consensus       164 ~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~-~~---~~di~~~s~sK~~~~~g~~~~G~~~~~~-----  227 (398)
T 2rfv_A          164 SLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL-QL---GADIVVHSVTKYINGHGDVIGGIIVGKQ-----  227 (398)
T ss_dssp             BCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECH-----
T ss_pred             cccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hh---CCcEEEEeCcccccCCCCceEEEEEECH-----
Confidence            9998   8999999999999999999999766532    12 12   24599999999999999999 9999854     


Q ss_pred             cchhHHH-HHHhhhc-c-cCCCccccccc
Q 022213          274 QKSGIID-SIKDCLS-I-YSDIPTFIQVC  299 (301)
Q Consensus       274 ~~~~~~~-~~~~~~~-~-~~~~~~~~q~~  299 (301)
                         +++. .++.... . ..+.+.+.|.+
T Consensus       228 ---~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T 2rfv_A          228 ---EFIDQARFVGLKDITGGCMSPFNAWL  253 (398)
T ss_dssp             ---HHHHHHHHTHHHHTTCCCCCHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence               3554 5554433 2 23455555543

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.93  E-value=6.2e-25  Score=201.79  Aligned_cols=205  Identities=20%  Similarity=0.164  Sum_probs=158.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-CC-CCCCCCCCCC----HHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-GK-FNCYATNSGI----PPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-~~-~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +++.+|+|+.|++   ..+..++.+.+++.+++.. +. ...|....|.    .+|++.+++++    +  .  ++.+++
T Consensus        62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~----g--~--~~~i~~  130 (427)
T 2w8t_A           62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY----G--T--TGAIVF  130 (427)
T ss_dssp             TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH----T--C--SEEEEE
T ss_pred             CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh----C--C--CceEEe
Confidence            3566899999975   2355678899999888864 21 2223333343    67888888887    2  2  356677


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc----CccEEEEcCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK----NTAAMVIINP  189 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p  189 (301)
                      +++++++..++.+++++||.|+++.|+|.++...++..|.+++.++.       .|++.|++.+++    ++++|+++++
T Consensus       131 ~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~  203 (427)
T 2w8t_A          131 STGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGV  203 (427)
T ss_dssp             SCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESE
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCC
Confidence            77788999999999999999999999999999999999999888763       689999998865    6788999999


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +||||.+.+   +++|.++|++||+++|+||+|..+.++.........++.. +.+++++||||.++++|   ||++++.
T Consensus       204 ~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~  277 (427)
T 2w8t_A          204 YSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNH  277 (427)
T ss_dssp             ETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECC
T ss_pred             CCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeCH
Confidence            999999999   8899999999999999999999987753211111112211 23699999999998777   9999854

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.93  E-value=6.2e-25  Score=201.01  Aligned_cols=204  Identities=17%  Similarity=0.186  Sum_probs=158.0

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC------------CCCHHHHHHHHHHHhhhCCCCCC
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN------------SGIPPARRAIADYLSRDLPYKLS  106 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~------------~g~~~lr~~ia~~l~~~~~~~~~  106 (301)
                      ..++++|.|+.+.+.     ++++.+.+++.+.+....  .|+.+            ....++++.+++++      +.+
T Consensus        18 ~~~~~~iyld~~~~~-----~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~   84 (423)
T 3lvm_A           18 RAMKLPIYLDYSATT-----PVDPRVAEKMMQFMTMDG--TFGNPASRSHRFGWQAEEAVDIARNQIADLV------GAD   84 (423)
T ss_dssp             --CCSSEECBTTTCC-----CCCHHHHHHHTTSSSTTS--CCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCC
T ss_pred             cccCCCEeecCCCcC-----CCCHHHHHHHHHHHhhcc--cccCCCccccchhHHHHHHHHHHHHHHHHHc------CCC
Confidence            347888999988753     457788888877765111  22221            12356777888777      457


Q ss_pred             CCCEEEcCCHHHHHHHHHHHhcC----CCCEEEEcCCCCcchHHHH---HhcCceEEEeecCCCCCCCCCHHHHHhhccc
Q 022213          107 ADDVYVTLGCKQAVEVILSVLAR----PGANVLLPRPGWPYYEGIA---QRKQVEVRHFDLLPERNWEVDLDAVEALADK  179 (301)
Q Consensus       107 ~~~i~~t~g~~~al~~~~~~l~~----~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  179 (301)
                      +++|++|+|+++|++.+++++.+    +||+|+++.|+|+++...+   ...|.+++.++++.  ++.+|++.+++.+++
T Consensus        85 ~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A           85 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD  162 (423)
T ss_dssp             GGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT
T ss_pred             CCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCC
Confidence            78999999999999999998874    7999999999999886666   45599999998754  556899999999988


Q ss_pred             CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       180 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      +++++++++|+||||.+++   +++|+++|+++|+++|+|++|.....    ...+..+   +..+++.|+||.++.+| 
T Consensus       163 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~---~~di~~~s~sK~~g~~g-  231 (423)
T 3lvm_A          163 DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL----PIDLSQL---KVDLMSFSGHKIYGPKG-  231 (423)
T ss_dssp             TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTS---CCSEEEEESTTTTSCSS-
T ss_pred             CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CcChhhc---CCCEEEechHHhcCCCC-
Confidence            8999999999999999999   88899999999999999999875221    1122222   23489999999877666 


Q ss_pred             eeEEEEeeCC
Q 022213          260 RFGWLVTNDP  269 (301)
Q Consensus       260 rvG~~~~~~~  269 (301)
                       +||+++++.
T Consensus       232 -~G~~~~~~~  240 (423)
T 3lvm_A          232 -IGALYVRRK  240 (423)
T ss_dssp             -CEEEEECBT
T ss_pred             -eEEEEEecc
Confidence             899998653

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.93  E-value=2.2e-25  Score=202.64  Aligned_cols=227  Identities=12%  Similarity=0.112  Sum_probs=166.3

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-CCC---CCCC--CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-GKF---NCYA--TNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-~~~---~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ++..+|+|+.|+|.  + +..++.+.+++.+.++. ...   ..|.  ...+..++|+++++++      +.+ +.|+++
T Consensus        43 ~g~~~id~~~~~~~--g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~------g~~-~~i~~~  112 (401)
T 1fc4_A           43 DGSHVINFCANNYL--G-LANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL------GME-DAILYS  112 (401)
T ss_dssp             TSCEEEECCCSCTT--S-CTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH------TCS-EEEEES
T ss_pred             CCccEEEeeccCcc--c-ccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh------CCC-cEEEeC
Confidence            46789999999752  1 22578899999888764 211   1221  1346788999999998      233 455555


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEc
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVII  187 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~  187 (301)
                       ++++++..++++++++||.|+++.|+|..+...++..|.+++.++.       .|++.+++.+++      ++++++++
T Consensus       113 -sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~  184 (401)
T 1fc4_A          113 -SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATD  184 (401)
T ss_dssp             -CHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             -ChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEe
Confidence             5578999999999999999999999998888888889999988863       578899888764      68899999


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-cccc-CCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEE
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTF-GSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWL  264 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~-~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~  264 (301)
                      +|+||||.+++   +++|.++|+++|+++|+|++|+ ++.+ .+..+.+...+.. +..++++|+||.+ +.+|   ||+
T Consensus       185 ~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g---G~~  257 (401)
T 1fc4_A          185 GVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG---GYT  257 (401)
T ss_dssp             SEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC---EEE
T ss_pred             CCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC---EEE
Confidence            99999999999   8999999999999999999996 6653 3322221112222 3459999999998 5565   999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhc---ccCCCccccccc
Q 022213          265 VTNDPNGIFQKSGIIDSIKDCLS---IYSDIPTFIQVC  299 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~~  299 (301)
                      +++.        +++++++....   ...+.+.+.|.+
T Consensus       258 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a  287 (401)
T 1fc4_A          258 AARK--------EVVEWLRQRSRPYLFSNSLAPAIVAA  287 (401)
T ss_dssp             EECH--------HHHHHHHHHCHHHHHSCCCCHHHHHH
T ss_pred             EcCH--------HHHHHHHHhCcCceeCCCCCHHHHHH
Confidence            9832        47777766431   123455555543

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.93  E-value=7.1e-25  Score=198.60  Aligned_cols=190  Identities=21%  Similarity=0.261  Sum_probs=152.7

Q ss_pred             CCCC-h---HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCC
Q 022213           57 CFRT-A---VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPG  131 (301)
Q Consensus        57 ~~~~-~---~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~g  131 (301)
                      +|+. |   +.+.+++.++++...+ .|.+..+..++|+++++++..      + +.|++++| ++|++.+++++ +++|
T Consensus         8 ~f~~~p~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~l~~~la~~~~~------~-~~i~~~sG-t~al~~~l~~l~~~~g   78 (388)
T 1b9h_A            8 EFPAWPQYDDAERNGLVRALEQGQW-WRMGGDEVNSFEREFAAHHGA------A-HALAVTNG-THALELALQVMGVGPG   78 (388)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHTSCC-BTTTCSHHHHHHHHHHHHTTC------S-EEEEESCH-HHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCe-eecCCHHHHHHHHHHHHHhCC------C-eEEEeCCH-HHHHHHHHHHcCCCCc
Confidence            4554 4   7899999999876433 466667889999999999832      2 45666665 89999999999 8999


Q ss_pred             CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          132 ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       132 d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      |+|+++.|+|.++...++..|.+++.++++++ ++.+|++.+++.+++++++|+   |+||||.+.+   +++|.++|++
T Consensus        79 d~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~la~~  151 (388)
T 1b9h_A           79 TEVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISAD  151 (388)
T ss_dssp             CEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred             CEEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHHHHH
Confidence            99999999999999999999999999998643 467999999999987776655   9999999988   8888899999


Q ss_pred             CCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          212 LRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       212 ~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +|+++|+|++|+. ..+.+.   .+..+.    .+.+.||||..+++|.|+||+++++.
T Consensus       152 ~~~~li~D~a~~~g~~~~~~---~~~~~~----~i~~~S~s~~K~l~g~~~G~~~~~~~  203 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQGK---RVGELD----SIATFSFQNGKLMTAGEGGAVVFPDG  203 (388)
T ss_dssp             HTCCBCEECTTCTTCEETTE---EGGGSS----SCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred             cCCEEEEecchhcCCccCCe---eccccc----ceEEEEccCCCcccCCCeEEEEECCH
Confidence            9999999999986 333322   122222    48889999777777789999998653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.93  E-value=2.8e-25  Score=205.56  Aligned_cols=245  Identities=13%  Similarity=0.111  Sum_probs=170.5

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCC--CCCCC---CCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDP--TAFPC---FRTAVEAEDAIVDAVRSGKFNCYATNSGIPP   88 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p--~~~p~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   88 (301)
                      +.+++..+++.+..+...... + +..+.++++|+.|++  +....   .+.++.+.+++.    .. ...|.+..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~   79 (456)
T 2ez2_A            7 PFRIKSVETVSMIPRDERLKK-M-QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYH   79 (456)
T ss_dssp             SSCCCCCCCCCCCCHHHHHHH-H-HHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHH
T ss_pred             CeeeeeecccCCCCHHHHHHH-H-HHCCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHH
Confidence            445555666644332221111 1 112556777777765  32111   133455555543    22 235877778899


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCC-cchHHHHHhcCceEEEeecCC----C
Q 022213           89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGW-PYYEGIAQRKQVEVRHFDLLP----E  163 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~-~~~~~~~~~~g~~~~~~~~~~----~  163 (301)
                      ||+++++++.        .+++++|+|+++|+..++++++++||  +++.|+| ..+...+...|.+++.+++..    +
T Consensus        80 l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~  149 (456)
T 2ez2_A           80 LERTVQELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAG  149 (456)
T ss_dssp             HHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTT
T ss_pred             HHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEeccccccccc
Confidence            9999999982        34899999999999999999999999  7888999 777788889999999998752    1


Q ss_pred             C----CCCCCHHHHHhhcccCc----cEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc----------
Q 022213          164 R----NWEVDLDAVEALADKNT----AAMVIINPGN-PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH----------  224 (301)
Q Consensus       164 ~----~~~~~~~~l~~~~~~~~----~~v~l~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~----------  224 (301)
                      .    ++.+|+++|++++++++    +++++++|+| |||.+++.+++++|+++|++||+++|+|++|..          
T Consensus       150 ~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~  229 (456)
T 2ez2_A          150 LNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQE  229 (456)
T ss_dssp             CCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHS
T ss_pred             ccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccc
Confidence            2    36789999999887655    7888899998 999999999999999999999999999999986          


Q ss_pred             cccCCCCCCCcc-ccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          225 LTFGSIPYTPMG-LFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       225 ~~~~~~~~~~~~-~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +.+.+....++. ......+++++ |++|. +++| |.||+++++       ++++++++..
T Consensus       230 ~~~~g~~~~~~~~~~~~~~d~~~~-S~kk~-~~~~-~gG~~~~~~-------~~~~~~~~~~  281 (456)
T 2ez2_A          230 QGFENKSIAEIVHEMFSYADGCTM-SGKKD-CLVN-IGGFLCMND-------DEMFSSAKEL  281 (456)
T ss_dssp             TTCTTSCHHHHHHHHHTTCSEEEE-ETTTT-TCCS-SCEEEEESC-------HHHHHHHHHH
T ss_pred             cccCCcchhhhhhhhcccCCEEEE-eCccc-CCCC-ceeEEEECC-------HHHHHHHHHH
Confidence            345443211110 01112345555 78887 5567 789998743       2466666554

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.93  E-value=1.4e-25  Score=204.19  Aligned_cols=230  Identities=15%  Similarity=0.167  Sum_probs=160.7

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      .+++.+++|+.|.+..+-.+ .++.+.+++.+++.....  ..|.. ....++++.+++++        ..++|++|+|+
T Consensus        36 ~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~--------~~~~v~~~~gg  105 (406)
T 4adb_A           36 QQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGNGYTN-EPVLRLAKKLIDAT--------FADRVFFCNSG  105 (406)
T ss_dssp             TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTSCC-HHHHHHHHHHHHHS--------SCSEEEEESSH
T ss_pred             CCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccCCcCC-HHHHHHHHHHHhhC--------CCCeEEEeCcH
Confidence            35778999998832111122 467889999988864211  11221 12344555555544        34599999999


Q ss_pred             HHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCCCCCCHHHHHh
Q 022213          117 KQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       117 ~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      ++|++.++++++.       +| |+|++++|+|+++.......+.             ++..++.       .|++.|++
T Consensus       106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  178 (406)
T 4adb_A          106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASA  178 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHH
Confidence            9999999998875       66 9999999999987544443332             2333322       47999999


Q ss_pred             hcccCccEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          176 LADKNTAAMVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       176 ~~~~~~~~v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      .+++++++++++ |+||||.++  +.+++++|+++|++||+++|+||+|.++.+.+..+ .+..++...+++   ||||.
T Consensus       179 ~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---t~sK~  253 (406)
T 4adb_A          179 LIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDLL---TTAKA  253 (406)
T ss_dssp             TCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGG
T ss_pred             HhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHhcCCCCCEE---Eechh
Confidence            998788888877 999999998  99999999999999999999999999876655322 233333334555   67999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++ +|+|+||++++.        +++++++.... ...+.+++.|.+
T Consensus       254 ~~-~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  291 (406)
T 4adb_A          254 LG-GGFPVGALLATE--------ECARVMTVGTHGTTYGGNPLASAV  291 (406)
T ss_dssp             GG-TTSCCEEEEECH--------HHHHTCCTTSSCCSSTTCHHHHHH
T ss_pred             hc-CCCCeEEEEEcH--------HHHhhhccCCcCCCCCCCHHHHHH
Confidence            98 999999998743        46666665432 233556666654

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.93  E-value=5.1e-25  Score=201.07  Aligned_cols=205  Identities=13%  Similarity=0.137  Sum_probs=157.2

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CC----CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FN----CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~----~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +++.+++|+.+++.   .++.++.+.+++.++++...  ..    .|+......++++++++++.        .+..+++
T Consensus        57 ~g~~~ld~~s~~~l---~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~  125 (409)
T 3kki_A           57 ASPDDIILQSNDYL---ALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--------FDECLLS  125 (409)
T ss_dssp             CCTTSEECCCSCTT---CCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--------CSEEEEE
T ss_pred             CCCceEEeeccCcc---CCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--------CCeEEEe
Confidence            46778999887642   46667899999999887521  11    12333446788888888872        2234556


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNP  192 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~np  192 (301)
                      +++++++..++.+++++||.|+++.|+|..+...+...|.+++.++.       .|++++++.+++ +++++++++|+||
T Consensus       126 ~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~np  198 (409)
T 3kki_A          126 QSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYST  198 (409)
T ss_dssp             SCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTT
T ss_pred             cchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence            66689999999999999999999999999999889999999887764       689999998875 5789999999999


Q ss_pred             cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ||.+.+   +++|+++|++||+++|+||+|....++.........++.. ...|++.|+||+++++|   ||++++.
T Consensus       199 tG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~~  269 (409)
T 3kki_A          199 LGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNN  269 (409)
T ss_dssp             TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESS
T ss_pred             CCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEECH
Confidence            999999   8899999999999999999999865532211111112211 23488999999998775   9998754

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.92  E-value=1.9e-25  Score=207.13  Aligned_cols=221  Identities=19%  Similarity=0.167  Sum_probs=163.0

Q ss_pred             CCeeeccCC-CCCCCCCCCChHHHHHHHHHH---HhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           42 RPVVPLGYG-DPTAFPCFRTAVEAEDAIVDA---VRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        42 ~~~i~l~~g-~p~~~p~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .++|+|+.| +|    +++.|+.+.++....   ........|+. .|.+ +++++++++.+.++    .+++++++|++
T Consensus        89 ~~~i~l~~g~~~----~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~-~g~~-~~~~l~~~la~~~g----~~~~i~~~sGt  158 (464)
T 1ibj_A           89 TLLVNLDNKFDP----FDAMSTPLYQTATFKQPSAIENGPYDYTR-SGNP-TRDALESLLAKLDK----ADRAFCFTSGM  158 (464)
T ss_dssp             HHHTCCCCSSCT----TCCSSCCCCCCSBCCCSSSSCCCSCSBTT-TCCH-HHHHHHHHHHHHHT----CSEEEEESSHH
T ss_pred             CeEEECCCCCCC----CCCCCccHHhhhhhhhhcccccCCccccC-CCCH-HHHHHHHHHHHHhC----CCeEEEECCHH
Confidence            457899987 64    355565565554422   11122345763 4655 77778887777555    24788888889


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC  193 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  193 (301)
                      +++..++. ++++||+|+++.|.|.++...    ++..|.+++.++.       .|++++++.++++++++++++|+|||
T Consensus       159 ~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~~~tk~v~l~~p~Npt  230 (464)
T 1ibj_A          159 AALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIGPQTKLVWLESPTNPR  230 (464)
T ss_dssp             HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCCSSEEEEEECSSCTTT
T ss_pred             HHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhccCceEEEEeCCCCCC
Confidence            99998886 778999999999999988653    4567999998876       28899999998889999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEeeCCCCc
Q 022213          194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTNDPNGI  272 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~~~~~~  272 (301)
                      |.+++   +++|+++|++||+++|+|++|....    ...++. +   +..|+++|+||.++.+ |+|+||++++++   
T Consensus       231 G~v~~---l~~i~~la~~~gi~livDea~~~g~----~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~---  296 (464)
T 1ibj_A          231 QQISD---IRKISEMAHAQGALVLVDNSIMSPV----LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGE---  296 (464)
T ss_dssp             CCCCC---HHHHHHHHHTTTCEEEEECTTTCTT----TCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSH---
T ss_pred             CEeec---HHHHHHHHHHcCCEEEEECCCcccc----cCChhh-c---CCEEEEECCcccccCCCCCcEEEEEEChH---
Confidence            99998   8999999999999999999997522    112222 2   3469999999998765 999999998542   


Q ss_pred             ccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          273 FQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       273 ~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                          +++++++.... ...+.+++.|.
T Consensus       297 ----~l~~~l~~~~~~~g~~~~~~~~~  319 (464)
T 1ibj_A          297 ----KLAKEVYFLQNSEGSGLAPFDCW  319 (464)
T ss_dssp             ----HHHHHHHHHHHHTTCBCCHHHHH
T ss_pred             ----HHHHHHHHHHHhcCCCCCHHHHH
Confidence                46677766543 23345555554

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.92  E-value=1.3e-25  Score=205.76  Aligned_cols=239  Identities=11%  Similarity=0.027  Sum_probs=165.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +++.+++|+.|.+...-.+ +++.+.+++.++++....  ..|.+..+..+||+++++++.   + . .+++|++|+|++
T Consensus        39 ~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~  112 (426)
T 1sff_A           39 EGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGS  112 (426)
T ss_dssp             TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHH
T ss_pred             CCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchH
Confidence            4677899988863211112 567889999988864321  145566678899999999982   2 1 348999999999


Q ss_pred             HHHHHHHH---HhcCCCCEEEEcCCCCcchH-HHHHhcCce-------------EEEeecCC---CCCCCCCHHHHHhhc
Q 022213          118 QAVEVILS---VLARPGANVLLPRPGWPYYE-GIAQRKQVE-------------VRHFDLLP---ERNWEVDLDAVEALA  177 (301)
Q Consensus       118 ~al~~~~~---~l~~~gd~Vl~~~p~~~~~~-~~~~~~g~~-------------~~~~~~~~---~~~~~~~~~~l~~~~  177 (301)
                      ++++.+++   .+.++| .|++++|+|+++. ..+...|.+             ++.+++..   ..++.+|++.|++.+
T Consensus       113 ~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l  191 (426)
T 1sff_A          113 EAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF  191 (426)
T ss_dssp             HHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHH
Confidence            99999988   677776 8999999998754 345555532             55566532   112346889999887


Q ss_pred             c-----cCccEEEE-cCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          178 D-----KNTAAMVI-INPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       178 ~-----~~~~~v~l-~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +     .+++++++ ++++| || .+.+.+++++|.++|++||+++|+||+|.++.+.+. ...+..++..   +.+.||
T Consensus       192 ~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~---~di~s~  266 (426)
T 1sff_A          192 KNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMGVA---PDLTTF  266 (426)
T ss_dssp             HHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTSC---CSEEEE
T ss_pred             HhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc-hhhhhhcCCC---CCEEEE
Confidence            6     34455555 34577 99 788999999999999999999999999998766543 2222222222   223499


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++. |+|+||+++++        ++++.++.... ...+.++++|.+
T Consensus       267 sK~~~~-GlriG~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a  307 (426)
T 1sff_A          267 AKSIAG-GFPLAGVTGRA--------EVMDAVAPGGLGGTYAGNPIACVA  307 (426)
T ss_dssp             CGGGGT-SSCCEEEEEEH--------HHHTTSCTTSBCCSSSSCHHHHHH
T ss_pred             cccccC-CCceEEEEEcH--------HHHhhhccCCcCcCCCCCHHHHHH
Confidence            999986 99999999854        35555543222 233456666654

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=1.3e-24  Score=196.38  Aligned_cols=215  Identities=12%  Similarity=0.040  Sum_probs=157.3

Q ss_pred             CC-CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           41 PR-PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        41 ~~-~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      +. ++|+++.|.|.    .++++.+.+++.         .|..+   ..+++.+++++.+.+|.. +++++++++|++++
T Consensus        26 g~~~v~~~~~~~~~----~~~~~~v~~a~~---------~~~~~---~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a   88 (374)
T 2aeu_A           26 GRDALYDLSGLSGG----FLIDEKDKALLN---------TYIGS---SYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSA   88 (374)
T ss_dssp             CGGGCEECSSCCCC----CCCCHHHHHHHT---------STTHH---HHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHH
T ss_pred             CccceeeecccCCC----CCCCHHHHHHHH---------HhcCc---hHHHHHHHHHHHHHhCCC-CcceEEEEcChHHH
Confidence            55 79999998753    567788877764         12211   345566666665544532 34789999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHH---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccE-EEEcCCCCCccc
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAA-MVIINPGNPCGN  195 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~l~~p~nptG~  195 (301)
                      +..+++++  +||+|+++.|+|+++..   .++..|.+++.+         .|++.+++. ++++++ +++++|+||||.
T Consensus        89 ~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~  156 (374)
T 2aeu_A           89 ILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI  156 (374)
T ss_dssp             HHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC
T ss_pred             HHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC
Confidence            99999988  99999999998876433   567789988876         278999988 778899 899999999997


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~  275 (301)
                        +..++++|+++|++||+++|+|++|+.+..+.....+...+.   ..++++|+||.  ++|+|+||++++.       
T Consensus       157 --~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~---~di~~~S~sK~--l~g~~~G~~~~~~-------  222 (374)
T 2aeu_A          157 --ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG---ADLVVTSTDKL--MEGPRGGLLAGKK-------  222 (374)
T ss_dssp             --CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT---CSEEEEETTSS--SSSCSCEEEEEEH-------
T ss_pred             --CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccC---CcEEEecCccc--ccCcceEEEEECH-------
Confidence              778899999999999999999999987642000001011122   24889999998  4578999998853       


Q ss_pred             hhHHHHHHhhhcc-cCCCccccccc
Q 022213          276 SGIIDSIKDCLSI-YSDIPTFIQVC  299 (301)
Q Consensus       276 ~~~~~~~~~~~~~-~~~~~~~~q~~  299 (301)
                       +++++++..... ..+++++.|.+
T Consensus       223 -~~~~~l~~~~~~~~~~~~~~~~~a  246 (374)
T 2aeu_A          223 -ELVDKIYIEGTKFGLEAQPPLLAG  246 (374)
T ss_dssp             -HHHHHHHHHHHTTTCBCCHHHHHH
T ss_pred             -HHHHHHHHhhccccCCCCHHHHHH
Confidence             477777766542 33455555543

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.92  E-value=2.2e-24  Score=194.43  Aligned_cols=190  Identities=15%  Similarity=0.111  Sum_probs=149.0

Q ss_pred             CChHHHHHHHHHHHhcCC---CCCCCC----CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---
Q 022213           59 RTAVEAEDAIVDAVRSGK---FNCYAT----NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~---~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---  128 (301)
                      ++++.+.+++.+.+....   ...|..    ..+..++|+++++++      +.++++|++|+|+++|+..++.++.   
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~l~~~~   84 (382)
T 4eb5_A           11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGATEANNLAIIGYAMRN   84 (382)
T ss_dssp             CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence            467889999998886411   111332    124567888888887      3466799999999999999999998   


Q ss_pred             -CCCCEEEEcCCCCcchHHHHH---hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHH
Q 022213          129 -RPGANVLLPRPGWPYYEGIAQ---RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQE  204 (301)
Q Consensus       129 -~~gd~Vl~~~p~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  204 (301)
                       ++||+|++++|+|+++...+.   ..|.+++.++++.  ++.+|++.+++.++++++++++++|+||||.+++   +++
T Consensus        85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~  159 (382)
T 4eb5_A           85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEE  159 (382)
T ss_dssp             GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHH
T ss_pred             cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHH
Confidence             899999999999998765554   3699999998853  4568999999999888899999999999999999   789


Q ss_pred             HHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |+++|+++|++ |+|++|...    ..+..+..+   +..++++|+||.++.+|  +||+++++.
T Consensus       160 i~~l~~~~~~~-i~D~a~~~g----~~~~~~~~~---~~di~~~s~sK~~g~~g--~G~~~~~~~  214 (382)
T 4eb5_A          160 ISEVLAGKAAL-HIDATASVG----QIEVDVEKI---GADMLTISSNDIYGPKG--VGALWIRKE  214 (382)
T ss_dssp             HHHHHTTSSEE-EEECTTTBT----TBCCCHHHH---TCSEEEEETGGGTCCSS--CEEEEEETT
T ss_pred             HHHHHHHCCCE-EEEcchhcC----CcccCcccc---CCCEEEeehHHhcCCCc--eEEEEEccc
Confidence            99999999999 999999841    122222222   23489999999977666  799988764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.92  E-value=6.2e-24  Score=192.00  Aligned_cols=200  Identities=11%  Similarity=0.049  Sum_probs=154.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC--------
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP--------  130 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~--------  130 (301)
                      ++++.+.+++.+.+.... ..|....+..++++++.+++.+.++  .++++|++|+|+++++..+++++.++        
T Consensus        41 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~  117 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKG  117 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence            344678888888776321 1222112445666666666666555  46789999999999999999999876        


Q ss_pred             -----CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHH
Q 022213          131 -----GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQE  204 (301)
Q Consensus       131 -----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~  204 (301)
                           ||+|+++.|+|.++...++..|.+++.++++.  ++.+|++.+++.+++ +++++++++|+||||.+.+   +++
T Consensus       118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~  192 (397)
T 3f9t_A          118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEE  192 (397)
T ss_dssp             CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHH
T ss_pred             ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHH
Confidence                 99999999999999999999999999998854  466899999999988 8999999999999999998   888


Q ss_pred             HHHHHHhCCCeEEEccCCcccccCCCCC--------CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          205 IAEMARKLRVMVVADEVYGHLTFGSIPY--------TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       205 i~~~~~~~~~~ii~D~~y~~~~~~~~~~--------~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      |.++|++||+++|+|++|..+.++....        .++ .+.. ...+++.|++|. +++|.|+||+++++.
T Consensus       193 i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~s~~K~-~~~~~~~g~~~~~~~  262 (397)
T 3f9t_A          193 LSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF-DFSL-GVDSITIDPHKM-GHCPIPSGGILFKDI  262 (397)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCC-SGGG-TCSEEECCTTTT-TCCCSSCEEEEESSG
T ss_pred             HHHHHHHhCCeEEEEccccchhhhhcccccccccccccc-cccc-cCCeEEEccccc-cCCCCCceEEEEeCH
Confidence            9999999999999999998765421110        011 1111 234888999997 567889999998654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.92  E-value=2.5e-24  Score=192.33  Aligned_cols=209  Identities=13%  Similarity=0.059  Sum_probs=162.6

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+.+|+|+.+.+.     ++++.+.+++.+.+.     +|....|..++++++++++.+.+|  .++++|++|+|+++++
T Consensus        12 ~p~~i~l~~~~~~-----~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~   79 (359)
T 1svv_A           12 KPKPYSFVNDYSV-----GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTN   79 (359)
T ss_dssp             ---CEECSCSCSS-----CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHH
T ss_pred             CCeeEEecCCCcC-----CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHH
Confidence            4678999986542     467889999988875     476667888899999998888666  5678999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHH--HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC-------ccEEEEcCCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEG--IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN-------TAAMVIINPGN  191 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~v~l~~p~n  191 (301)
                      ..++++++++||+|++++|+|.++..  .++..|.+++.++.+   ++.+|++.+++.++++       ++++++++| |
T Consensus        80 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~  155 (359)
T 1svv_A           80 LIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-T  155 (359)
T ss_dssp             HHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-C
T ss_pred             HHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-C
Confidence            99999999999999999999998866  478889999999863   5679999999988765       788889998 7


Q ss_pred             CcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |||.+++.+++++|+++|++||+++|+|++|..+.++.... ....+.- ...-++..|.+|. +.+ .++|+++++.
T Consensus       156 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~l~~~~  230 (359)
T 1svv_A          156 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN-DLTLADIARLTDMFYIGATKA-GGM-FGEALIILND  230 (359)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-CCCHHHHHHHCSEEEEECTTT-TCS-SCEEEEECSG
T ss_pred             CCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-chhhhhhhhcCCEEEEecccC-CCC-CceEEEEEcc
Confidence            99999999999999999999999999999995543321111 1111000 0012778899997 443 5689998743

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=3.2e-24  Score=196.93  Aligned_cols=201  Identities=19%  Similarity=0.192  Sum_probs=142.8

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC---------CCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS---------GIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      .+++.|+.+.+.     ++++.+.+++.+.+..  ...|+...         ...++|+++++++      ++++++|++
T Consensus        17 ~~~~~Ld~~~~~-----~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~   83 (432)
T 3a9z_A           17 NRKVYMDYNATT-----PLEPEVIQAVTEAMKE--AWGNPSSSYVAGRKAKDIINTARASLAKMI------GGKPQDIIF   83 (432)
T ss_dssp             -CCEECBTTTCC-----CCCHHHHHHHHHHHHH--CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEE
T ss_pred             CCcEEeeCCccC-----CCCHHHHHHHHHHHHH--hcCCCccCcHHHHHHHHHHHHHHHHHHHHc------CCCcCeEEE
Confidence            567889888753     5578899999888764  22343311         1258999999988      356789999


Q ss_pred             cCCHHHHHHHHHHHhc--------CCCCEEEEcCCCCcch-----------------HHHHHhcCceEEEeecCCCCCCC
Q 022213          113 TLGCKQAVEVILSVLA--------RPGANVLLPRPGWPYY-----------------EGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus       113 t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      |+|+++++..++++++        ++||+|+++.|+|..+                 ....+..|.+++.++++.+ ++.
T Consensus        84 ~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~  162 (432)
T 3a9z_A           84 TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQ  162 (432)
T ss_dssp             ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSS
T ss_pred             eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCC
Confidence            9999999999999986        5899999999999865                 3334557899999987542 346


Q ss_pred             CCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC----------CeEEEccCCcccccCCCCCCCccc
Q 022213          168 VDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR----------VMVVADEVYGHLTFGSIPYTPMGL  237 (301)
Q Consensus       168 ~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~----------~~ii~D~~y~~~~~~~~~~~~~~~  237 (301)
                      +|++.|++.++++++++++++|+||||.+++   +++|.++|++++          +++|+|++|+...    ....+..
T Consensus       163 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~----~~~~~~~  235 (432)
T 3a9z_A          163 VEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK----RRVDVED  235 (432)
T ss_dssp             CCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT----SCCCHHH
T ss_pred             cCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC----cccChhh
Confidence            8999999999888899999999999999999   667888888998          9999999997632    2222222


Q ss_pred             cCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ...  + +++.|+||.+   |.|+||+++++.
T Consensus       236 ~~~--d-~~~~s~~K~~---g~~~G~~~~~~~  261 (432)
T 3a9z_A          236 LGV--D-FLTIVGHKFY---GPRIGALYVRGV  261 (432)
T ss_dssp             HCC--S-EEEEEGGGTT---CCSCEEEEETTB
T ss_pred             cCC--C-EEEEehhHhc---CCcceEEEEccc
Confidence            222  2 6689999986   357999998653

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.92  E-value=1e-24  Score=198.35  Aligned_cols=213  Identities=16%  Similarity=0.129  Sum_probs=158.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-CC-----CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-GK-----FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-~~-----~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++++++|..++..   .++.++.+.+++.+++.. ..     ...|+...+..++|+++++++.      . +++|++++
T Consensus        45 g~~~i~~~~~~~~---~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~s  114 (401)
T 2bwn_A           45 KQDITVWCGNDYL---GMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSS  114 (401)
T ss_dssp             EEEEEECSCSCTT---SGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESC
T ss_pred             CCcEEEeeCCCcc---cCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECC
Confidence            3556888776642   244456799999888864 11     1235555578899999999982      2 46788877


Q ss_pred             CHHHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc----cCccEEEEcC
Q 022213          115 GCKQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD----KNTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~  188 (301)
                      |++ ++..++..+.  .+||+|+++.|+|.++...++..|.+++.++.+       |++.+++.++    ++++++++++
T Consensus       115 G~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~  186 (401)
T 2bwn_A          115 AYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFES  186 (401)
T ss_dssp             HHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEES
T ss_pred             cHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEec
Confidence            766 7777777654  589999999999999988888999999988752       6788888775    4688999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+||||.+++   +++|+++|++||+++|+|++|....++......+...+. ....++++|+||.++++|   ||++++
T Consensus       187 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~  260 (401)
T 2bwn_A          187 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS  260 (401)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred             CcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC
Confidence            9999999999   889999999999999999999965554221111111111 123589999999999888   999874


Q ss_pred             CCCCcccchhHHHHHHhh
Q 022213          268 DPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~  285 (301)
                      .        ++++.++..
T Consensus       261 ~--------~~~~~l~~~  270 (401)
T 2bwn_A          261 A--------RMVDAVRSY  270 (401)
T ss_dssp             H--------HHHHHHHHH
T ss_pred             H--------HHHHHHHHh
Confidence            2        466666643

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.92  E-value=1.1e-24  Score=197.21  Aligned_cols=207  Identities=14%  Similarity=0.047  Sum_probs=153.9

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      +.+.|..+.|     .++++.+.+++.+.+..  ...|....+..++|+++++++      +.++++|++|+|+++++..
T Consensus         8 ~~~yl~~~~~-----~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~t~g~t~a~~~   74 (392)
T 2z9v_A            8 DPVITLTAGP-----VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAM------RLSNKPVILHGEPVLGLEA   74 (392)
T ss_dssp             CCSEECSSSC-----CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHT------TCSSCCEEESSCTHHHHHH
T ss_pred             CcceeecCCC-----cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHh------CCCCCEEEEeCCchHHHHH
Confidence            4456666654     35567787877665542  111112234577888888887      3457899999999999999


Q ss_pred             HHHHhcCCCCEEEEcCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc--cCccEEEEcCCCCCcccCCC
Q 022213          123 ILSVLARPGANVLLPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD--KNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~~~~  198 (301)
                      ++++++++||+|+++.|+|+++  ...++..|.+++.++++.+  +.+|++.+++.++  ++++++++++|+||||.+++
T Consensus        75 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~  152 (392)
T 2z9v_A           75 AAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP  152 (392)
T ss_dssp             HHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC
T ss_pred             HHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc
Confidence            9999999999999999999875  3444567999999987543  4589999999884  47889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeCCCCcccchh
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                         +++|.++|+++|+++|+|++|+...    ....+..+   +..++++|+||++ +.+|  +||+++++        +
T Consensus       153 ---l~~i~~l~~~~~~~li~D~a~~~g~----~~~~~~~~---~~d~~~~s~sK~~~~~~g--~G~l~~~~--------~  212 (392)
T 2z9v_A          153 ---IDAIGALVSAHGAYLIVDAVSSFGG----MKTHPEDC---KADIYVTGPNKCLGAPPG--LTMMGVSE--------R  212 (392)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTTBTT----BSCCGGGG---TCSEEEECSSSTTCCCSC--CEEEEECH--------H
T ss_pred             ---HHHHHHHHHHcCCeEEEEcccccCC----cccccccc---cceEEEecCcccccCCCc--eeEEEECH--------H
Confidence               7899999999999999999998421    12223222   2348899999964 3455  59999843        4


Q ss_pred             HHHHHHh
Q 022213          278 IIDSIKD  284 (301)
Q Consensus       278 ~~~~~~~  284 (301)
                      ++++++.
T Consensus       213 ~~~~l~~  219 (392)
T 2z9v_A          213 AWAKMKA  219 (392)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhh
Confidence            6666653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.92  E-value=1.2e-24  Score=197.19  Aligned_cols=207  Identities=12%  Similarity=0.084  Sum_probs=158.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCK  117 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~  117 (301)
                      ....++++.|.      +++++.+.+++.+.+..    .|.+  ..+..++|+++++++      +.+++ +|++|+|++
T Consensus        17 ~~~~~~~~~g~------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t   80 (393)
T 2huf_A           17 TPNKLLMGPGP------SNAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLF------QTNNIATFCLSASGH   80 (393)
T ss_dssp             CCCCEECSSSC------CCCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHH------TCCCSEEEEESSCHH
T ss_pred             CCCeEEecCCC------CCCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHh------CCCCCcEEEEcCcHH
Confidence            45667777773      45677888877665432    2322  235678888888888      34554 899999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcc
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCG  194 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG  194 (301)
                      +++..++++++++||+|+++.|+|+++  ...++..|.+++.++++.  ++.+|++.+++.+++ +++++++++|+||||
T Consensus        81 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG  158 (393)
T 2huf_A           81 GGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTG  158 (393)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCcc
Confidence            999999999999999999999999874  334566899999999754  346899999999987 899999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc-CCCCcceeEEEEeeCCCCcc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR-WLVPGWRFGWLVTNDPNGIF  273 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~-~~~~G~rvG~~~~~~~~~~~  273 (301)
                      .+++   +++|+++|+++|+++|+|+++....    .+..+..   .+..+++.|+||+ ++.+|+  ||+++++     
T Consensus       159 ~~~~---l~~i~~~~~~~~~~li~D~a~~~~~----~~~~~~~---~~~d~~~~s~sK~l~g~~G~--G~~~~~~-----  221 (393)
T 2huf_A          159 VLQG---LEGVGALCHQHNCLLIVDTVASLGG----APMFMDR---WEIDAMYTGSQKVLGAPPGI--TPVSFSH-----  221 (393)
T ss_dssp             EECC---CTTHHHHHHHTTCEEEEECTTTBTT----BCCCTTT---TTCSEEECCSSSTTCCCSSC--EEEEECH-----
T ss_pred             ccCC---HHHHHHHHHHcCCEEEEEcccccCC----CCcchhh---cCccEEEECCCcccccCCCe--EEEEECH-----
Confidence            9999   8899999999999999999986421    1222222   2345889999997 456786  9999842     


Q ss_pred             cchhHHHHHHhh
Q 022213          274 QKSGIIDSIKDC  285 (301)
Q Consensus       274 ~~~~~~~~~~~~  285 (301)
                         +++++++..
T Consensus       222 ---~~~~~~~~~  230 (393)
T 2huf_A          222 ---RAVERYKRR  230 (393)
T ss_dssp             ---HHHHHHHTC
T ss_pred             ---HHHHHHhhc
Confidence               477777653

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.92  E-value=1.3e-23  Score=188.88  Aligned_cols=188  Identities=16%  Similarity=0.130  Sum_probs=143.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCC-----CC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATN-----SG----IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-  128 (301)
                      ++++.+.+++.+.+...  ..++..     .+    ..++++.+++++      +.++++|++|+|+++++..++++++ 
T Consensus        11 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~~~a~~~~~~~~~~   82 (382)
T 4hvk_A           11 PVDERILEAMLPYMTES--FGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CCCHHHHHHHHHHHHTS--CCCTTCSSHHHHHHHHHHHHHHHHHHHHT------TCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhh--cCCCcccchHHHHHHHHHHHHHHHHHHHc------CCCcCeEEEECCchHHHHHHHHHhhh
Confidence            45678999999888642  112211     11    225666666665      3467789999999999999999998 


Q ss_pred             ---CCCCEEEEcCCCCcchHHHHH---hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          129 ---RPGANVLLPRPGWPYYEGIAQ---RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       129 ---~~gd~Vl~~~p~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                         ++||+|+++.+.|+++...+.   ..|.+++.++++.  ++.+|++++++.++++++++++++|+||||.+.+   +
T Consensus        83 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~  157 (382)
T 4hvk_A           83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---V  157 (382)
T ss_dssp             HHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---H
T ss_pred             hhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---H
Confidence               899999999999998765444   4699999998853  4568999999999888999999999999999999   7


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++|+++|++||+ +|+|++|....    ....+..++   ..+++.|+||.++.+|  +|++++++.
T Consensus       158 ~~i~~l~~~~~~-li~D~a~~~~~----~~~~~~~~~---~d~~~~s~~K~~g~~g--~g~~~~~~~  214 (382)
T 4hvk_A          158 EEISEVLAGKAA-LHIDATASVGQ----IEVDVEKIG---ADMLTISSNDIYGPKG--VGALWIRKE  214 (382)
T ss_dssp             HHHHHHHSSSSE-EEEECTTTBTT----BCCCHHHHT---CSEEEEESGGGTSCTT--CEEEEEETT
T ss_pred             HHHHHHHHHcCE-EEEEhHHhcCC----CCCCchhcC---CCEEEEeHHHhcCCCc--eEEEEEcCc
Confidence            889999999999 99999987522    111222222   2489999999877666  677776654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.92  E-value=1.1e-23  Score=192.85  Aligned_cols=200  Identities=18%  Similarity=0.220  Sum_probs=152.6

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcC
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPR  138 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~  138 (301)
                      .++.+.+++.++++......|++..|..++++++.+.+.+.+|.  +  ++++++++++++..++.++ +++||+|+++.
T Consensus        14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~   89 (418)
T 2c81_A           14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--P--YCVPTTSGSTALMLALEALGIGEGDEVIVPS   89 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECC
Confidence            46889999999887655445877667444444444444333332  2  5677778899999999999 89999999999


Q ss_pred             CCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213          139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA  218 (301)
Q Consensus       139 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~  218 (301)
                      |+|.++...++..|.+++.+++++ .++.+|++.+++.++++++++++   +||||...+   +++|.++|+++|+++|+
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~---~~~i~~~~~~~~~~li~  162 (418)
T 2c81_A           90 LTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIP---VHLFGSMAN---MDEINEIAQEHNLFVIE  162 (418)
T ss_dssp             SSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCC---HHHHHHHHHHTTCEEEE
T ss_pred             CccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEE---eCCcCCccc---HHHHHHHHHHCCCEEEE
Confidence            999999999999999999998854 35679999999999877887765   458999877   88899999999999999


Q ss_pred             ccCCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          219 DEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       219 D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      |++|..+. +++..   +..+.   + +.+.||  ||.++. | |+||++++++       +++++++...
T Consensus       163 D~a~~~~~~~~~~~---~~~~~---~-~~~~s~s~~K~~~~-g-~~g~~~~~~~-------~l~~~~~~~~  217 (418)
T 2c81_A          163 DCAQSHGSVWNNQR---AGTIG---D-IGAFSCQQGKVLTA-G-EGGIIVTKNP-------RLFELIQQLR  217 (418)
T ss_dssp             ECTTCTTCEETTEE---TTSSS---S-EEEEECCTTSSSCS-S-SCEEEEESCH-------HHHHHHHHHH
T ss_pred             ECcccccCccCCEe---ccccc---c-eEEEeccCCcccCC-C-CeEEEEECCH-------HHHHHHHHHH
Confidence            99999876 54322   22222   1 677777  999887 8 9999998542       4666666543

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.7e-24  Score=195.69  Aligned_cols=200  Identities=14%  Similarity=0.093  Sum_probs=155.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCCC----CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCYA----TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +++.|+.+.+.     ++++.+.+++.+.+....   ...|.    ...+..++|+++++++      +.++++|++|+|
T Consensus        26 ~~~~ld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g   94 (406)
T 3cai_A           26 GWVHFDAPAGM-----LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV------NADPGGVVLGAD   94 (406)
T ss_dssp             SCEECBGGGCC-----CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESC
T ss_pred             CeEEEeCCCcC-----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCC
Confidence            47888888753     456789999988886421   11232    1235678899999998      356789999999


Q ss_pred             HHHHHHHHHHHh---cCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213          116 CKQAVEVILSVL---ARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       116 ~~~al~~~~~~l---~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      +++++..+++++   +++||+|+++.|+|.++...+.    ..|.+++.+++++ .++.+|++.|++.++++++++++++
T Consensus        95 ~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~  173 (406)
T 3cai_A           95 RAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-ETGELPTWQWESLISKSTRLVAVNS  173 (406)
T ss_dssp             HHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-TTCCCCGGGHHHHCCTTEEEEEEES
T ss_pred             hHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-ccCCcCHHHHHHHhCCCceEEEEeC
Confidence            999999999988   7899999999999997644433    3699999998763 3456899999999988899999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeE-EEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG-WLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG-~~~~~  267 (301)
                      |+||||.+++   +++|.++|+++|+++|+|++|....    .+..+..++   ..+++.|+||.++ ++  +| |++++
T Consensus       174 ~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~----~~~~~~~~~---~d~~~~s~~K~~g-~~--~G~~~~~~  240 (406)
T 3cai_A          174 ASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY----RLLDIRETD---ADVVTVNAHAWGG-PP--IGAMVFRD  240 (406)
T ss_dssp             BCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT----CCCCHHHHC---CSEEEEEGGGGTS-CS--CEEEEESC
T ss_pred             CcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC----CCCCchhcC---CCEEEeehhhhcC-CC--cCeEEEEe
Confidence            9999999999   7889999999999999999998421    112222222   3488999999864 54  99 99874

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=6e-25  Score=195.94  Aligned_cols=214  Identities=18%  Similarity=0.208  Sum_probs=153.5

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +..+|+|+.+...    + +++.+.+++.+....  ...|.+..+..+||+++++++.        .+++++++|+++++
T Consensus         2 ~~~~i~~~~~~~~----~-p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~   66 (347)
T 1jg8_A            2 PHMMIDLRSDTVT----K-PTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGN   66 (347)
T ss_dssp             ---CEECSCGGGC----C-CCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHH
T ss_pred             CceEEEeccccCC----C-CCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHH
Confidence            3467899999742    3 446777777544321  1257766688899999999982        24678888999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGN  191 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~n  191 (301)
                      .+++.+++++||+|+++.|+|....   ..+...|.+++++ ..  .++.+|++++++.+++      +++++++++|||
T Consensus        67 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~n  143 (347)
T 1jg8_A           67 QVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN  143 (347)
T ss_dssp             HHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred             HHHHHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEecccc
Confidence            9999999999999999999997532   2567789998887 32  2455899999998875      578899999999


Q ss_pred             Cc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCccc--ccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          192 PC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGHL--TFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       192 pt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~--~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      || |.+++.+++++|+++|+++|+++|+|++|...  .+.+.....+.   ...+ .++.|+||+++++   +||+++.+
T Consensus       144 pt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d-~~~~s~sK~l~~~---~G~~~~~~  216 (347)
T 1jg8_A          144 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA---GYAD-SVMFCLSKGLCAP---VGSVVVGD  216 (347)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH---HTCS-EEEEESSSTTCCS---SCEEEEEC
T ss_pred             ccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc---cccc-EEEEecccccCCC---ceEEEEcC
Confidence            99 99999999999999999999999999987532  11121111111   1112 3345899998754   67544333


Q ss_pred             CCCcccchhHHHHHHhhh
Q 022213          269 PNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~  286 (301)
                             ++++++++...
T Consensus       217 -------~~~~~~~~~~~  227 (347)
T 1jg8_A          217 -------RDFIERARKAR  227 (347)
T ss_dssp             -------HHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHH
Confidence                   24666665543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.92  E-value=2.4e-24  Score=196.06  Aligned_cols=206  Identities=19%  Similarity=0.197  Sum_probs=164.7

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      .++|+|+.|.|.    +  ++.+.+++.+.+...   .|.+..+..++|+++++++..        +++++++|+++++.
T Consensus        30 ~~~id~~~~~~~----~--~~~v~~a~~~~~~~~---~y~~~~~~~~l~~~la~~~~~--------~~~v~~~~Gt~a~~   92 (399)
T 2oga_A           30 VPFLDLKAAYEE----L--RAETDAAIARVLDSG---RYLLGPELEGFEAEFAAYCET--------DHAVGVNSGMDALQ   92 (399)
T ss_dssp             BCSCCHHHHHHH----T--HHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHTTS--------SEEEEESCHHHHHH
T ss_pred             CcccccCcCCCC----C--CHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHCC--------CeEEEecCHHHHHH
Confidence            578999999753    2  378889998888643   576656788999999999832        36788888899999


Q ss_pred             HHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          122 VILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       122 ~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      .+++++ +++||+|+++.|+|.++...++..|.+++.+++++ +++.+|++.+++.+++++++++   |+||||...+  
T Consensus        93 ~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~--  166 (399)
T 2oga_A           93 LALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD--  166 (399)
T ss_dssp             HHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC--
T ss_pred             HHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC--
Confidence            999999 89999999999999999999999999999998854 2467999999999987777665   6789999988  


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchh
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                       +++|.++|+++|+++|+|++|..+. +++..   +..+.    .+++.|+  ||.++.+| |+||++++++       +
T Consensus       167 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~~----di~~~S~~~sK~~~~~G-~~g~~~~~~~-------~  230 (399)
T 2oga_A          167 -MDALRELADRHGLHIVEDAAQAHGARYRGRR---IGAGS----SVAAFSFYPGKNLGCFG-DGGAVVTGDP-------E  230 (399)
T ss_dssp             -HHHHHHHHHHHTCEECEECTTCTTCEETTEE---TTCTT----CEEEEECCTTSSSCCSS-CCEEEEESCH-------H
T ss_pred             -HHHHHHHHHHcCCEEEEECcccccCccCCee---ccccc----CEEEEeCCCCccCCcCC-ceEEEEeCCH-------H
Confidence             8888999999999999999998753 32221   22221    2888898  79998889 9999997542       4


Q ss_pred             HHHHHHhhh
Q 022213          278 IIDSIKDCL  286 (301)
Q Consensus       278 ~~~~~~~~~  286 (301)
                      ++++++...
T Consensus       231 ~~~~l~~~~  239 (399)
T 2oga_A          231 LAERLRMLR  239 (399)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            767776543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.91  E-value=3.2e-24  Score=194.91  Aligned_cols=207  Identities=14%  Similarity=0.141  Sum_probs=152.3

Q ss_pred             CCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ++..+++|+.|   +|.   .+ .++.+.+++.++++....  +.. ....++++++++.+.+.++    .+++++|+|+
T Consensus        38 ~g~~~ld~~~~~~~~~l---g~-~~~~v~~a~~~~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~gg  106 (397)
T 2ord_A           38 KGNAYLDFTSGIAVNVL---GH-SHPRLVEAIKDQAEKLIH--CSN-LFWNRPQMELAELLSKNTF----GGKVFFANTG  106 (397)
T ss_dssp             TCCEEEESSHHHHTCTT---CB-TCHHHHHHHHHHHHHCSC--CCT-TSEEHHHHHHHHHHHHTTT----SCEEEEESSH
T ss_pred             CCCEEEECCcccccccc---CC-CCHHHHHHHHHHHHhccc--Ccc-ccCCHHHHHHHHHHHHhcC----CCeEEEeCCH
Confidence            46778999887   431   12 467899999988874321  111 1112445555555544333    5799999999


Q ss_pred             HHHHHHHHHHhcC------C-CCEEEEcCCCCcch-HHHHHhcCce------------EEEeecCCCCCCCCCHHHHHhh
Q 022213          117 KQAVEVILSVLAR------P-GANVLLPRPGWPYY-EGIAQRKQVE------------VRHFDLLPERNWEVDLDAVEAL  176 (301)
Q Consensus       117 ~~al~~~~~~l~~------~-gd~Vl~~~p~~~~~-~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~  176 (301)
                      ++|+..+++++..      + ++.|++++|+|++. ...+...|.+            +..++.       .|++.+++.
T Consensus       107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~  179 (397)
T 2ord_A          107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRK  179 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHH
Confidence            9999999998864      5 47899999999764 4466666665            555543       389999999


Q ss_pred             cccCccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213          177 ADKNTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL  255 (301)
Q Consensus       177 ~~~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~  255 (301)
                      ++++++++++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+.+. ..++..++...+++   ||||.++
T Consensus       180 l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~d~~---s~sK~~~  255 (397)
T 2ord_A          180 MSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGVVPDVL---TTAKGLG  255 (397)
T ss_dssp             CCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCSEE---EECGGGG
T ss_pred             hhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhCCCCCee---eeccccC
Confidence            9888899999999999999 99999999999999999999999999997766543 22333333223444   7899988


Q ss_pred             CCcceeEEEEeeCC
Q 022213          256 VPGWRFGWLVTNDP  269 (301)
Q Consensus       256 ~~G~rvG~~~~~~~  269 (301)
                       +|+|+||+++++.
T Consensus       256 -~G~r~G~~~~~~~  268 (397)
T 2ord_A          256 -GGVPIGAVIVNER  268 (397)
T ss_dssp             -TTSCCEEEEECST
T ss_pred             -CCcCeEEEEEchH
Confidence             8999999998653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=3.8e-24  Score=194.05  Aligned_cols=230  Identities=15%  Similarity=0.076  Sum_probs=159.8

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCC-CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFN-CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +++.+++|+.+.+...  ++ .++.+.+++.+++...... .+.+.....++++.+++++        ..+++++|+|++
T Consensus        34 ~g~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~--------g~~~v~~~~~gt  103 (392)
T 3ruy_A           34 EGNRYMDLLSAYSAVN--QGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--------NKEMVLPMNTGA  103 (392)
T ss_dssp             TCCEEEESSHHHHTCT--TCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH--------TCSEEEEESSHH
T ss_pred             CCCEEEEcCCChhhhc--cCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc--------CCCEEEEeCcHH
Confidence            5778999988743211  11 4688999999888643211 1112234567777777776        267999999999


Q ss_pred             HHHHHHHHHhcCC----------CCEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCCCHHHHH
Q 022213          118 QAVEVILSVLARP----------GANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       118 ~al~~~~~~l~~~----------gd~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~  174 (301)
                      +|++.+++.+..+          +|+|+++.|+|+++...+...+..             +..++.       .|++.++
T Consensus       104 ~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~  176 (392)
T 3ruy_A          104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALK  176 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHH
Confidence            9999999987654          689999999998765444433221             333322       2799999


Q ss_pred             hhcccCccEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          175 ALADKNTAAMVIINPGNPCGNVFTYHH-LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       175 ~~~~~~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      +.++++++++++++|+||||.+++.++ +++|+++|++||+++|+||+|..+.+.+... ....++...+++   ++||.
T Consensus       177 ~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---~~SK~  252 (392)
T 3ruy_A          177 AAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDMY---ILGKA  252 (392)
T ss_dssp             HHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGG
T ss_pred             HHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhhccCCCCCEE---EEchh
Confidence            999888999999999999999996655 9999999999999999999998776655322 233333333444   77898


Q ss_pred             CCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          254 WLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++ +| +|+||++++.        +++++++.... ...+.+.+.|.+
T Consensus       253 l~-gG~~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a  291 (392)
T 3ruy_A          253 LG-GGVFPISCAAANR--------DILGVFEPGSHGSTFGGNPLACAV  291 (392)
T ss_dssp             GG-TTTSCCEEEEECH--------HHHTTCCTTSSCCSSTTCHHHHHH
T ss_pred             hh-CChhhhEEEEECH--------HHHhhhccCCcCCCCCCCHHHHHH
Confidence            43 36 9999999843        35555554332 233455555543

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.91  E-value=2.3e-24  Score=195.61  Aligned_cols=237  Identities=14%  Similarity=0.088  Sum_probs=156.5

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKF--NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ++..+++|+.|.+..  .+. .++.+.+++.++++....  ..| +.....++++.+++++    +  .++++|++|+|+
T Consensus        43 ~g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~~~gg  113 (395)
T 1vef_A           43 EGNEYIDCVGGYGVA--NLGHGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL----P--PELNRVFPVNSG  113 (395)
T ss_dssp             TSCEEEESSHHHHTC--TTCBTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS----C--TTEEEEEEESSH
T ss_pred             CCCEEEEccCccccc--cCCCCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc----C--CCcCEEEEcCcH
Confidence            466789998885321  133 678899999988874321  123 2223345555555554    3  467899999999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcc-hHHHHHhcCceEEE---eecCCCCC--CCCCHHHHHhhcccCccEEEEcC
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPY-YEGIAQRKQVEVRH---FDLLPERN--WEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~-~~~~~~~~g~~~~~---~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      ++|+..+++++.  .+||.|++++|+|++ +...+...|.+...   .++..+..  ...|++++++.+++++++++++.
T Consensus       114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~  193 (395)
T 1vef_A          114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEP  193 (395)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECS
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeC
Confidence            999999998874  578999999999975 34455556654210   11110000  01589999999987777777666


Q ss_pred             CCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ++||||.++ +.+++++|+++|++||+++|+|++|.++.+.+.. .++...+...+++   ||||.++. |+|+||++++
T Consensus       194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~-~~~~~~~~~~d~~---s~sK~~~~-g~~~G~~~~~  268 (395)
T 1vef_A          194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR-FAFEHFGIVPDIL---TLAKALGG-GVPLGVAVMR  268 (395)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCSEE---EECGGGGT-TSSCEEEEEE
T ss_pred             ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch-hHhhhcCCCCCEE---EEcccccC-CCceEEEEeh
Confidence            688999865 6888999999999999999999999975543322 1222222223344   88999886 9999999985


Q ss_pred             CCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      +        +++++++.... ...+.+.+.|.
T Consensus       269 ~--------~~~~~l~~~~~~~~~~~~~~~~~  292 (395)
T 1vef_A          269 E--------EVARSMPKGGHGTTFGGNPLAMA  292 (395)
T ss_dssp             H--------HHHHTSCTTSSCCSSTTCHHHHH
T ss_pred             H--------HHHhhhccCCcCCCcCCCHHHHH
Confidence            4        35555544211 12234555553

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.91  E-value=1.7e-23  Score=190.01  Aligned_cols=202  Identities=17%  Similarity=0.130  Sum_probs=149.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---CCCCCCCC----CCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---KFNCYATN----SGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~~~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ..++|.|+.+.+.     ++++.+.+++.+.+...   ....|...    ....++++.+++++      +.++++|++|
T Consensus        18 ~~~~iyld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~~~~v~~~   86 (400)
T 3vax_A           18 GSHMTYLDAAATT-----RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV------SAEPDELIFT   86 (400)
T ss_dssp             ----CCCCCCCCS-----SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT------TCCGGGEEEE
T ss_pred             cCCcEEecCCCCC-----CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc------CCCCCcEEEe
Confidence            5667888877642     56788889888877531   00012111    12345666666665      3567899999


Q ss_pred             CCHHHHHHHHHHHhc----CCCC-EEEEcCCCCcchHHHHH---hcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEE
Q 022213          114 LGCKQAVEVILSVLA----RPGA-NVLLPRPGWPYYEGIAQ---RKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMV  185 (301)
Q Consensus       114 ~g~~~al~~~~~~l~----~~gd-~Vl~~~p~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  185 (301)
                      +|+++++..++++++    ++|| +|+++.+.|+++...+.   ..|.+++.++++.  ++.+|++++++.+++++++++
T Consensus        87 ~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~  164 (400)
T 3vax_A           87 SGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVS  164 (400)
T ss_dssp             SCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEE
Confidence            999999999999998    8999 99999999988755444   3699999998754  556899999999988899999


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +++|+||||.+++   +++|+++|+++|+++|+|++|+...    ....+..+    ..+++.|+||.++.+|  +|+++
T Consensus       165 ~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~----~~~~~~~~----~d~~~~s~~K~~g~~g--~g~~~  231 (400)
T 3vax_A          165 LMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGK----VPGDLTTP----IDMISISGHKIGAPKG--VGALV  231 (400)
T ss_dssp             CCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTT----SGGGGGSC----CSEEEEETGGGTSCSS--CEEEE
T ss_pred             EECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCC----CCcChhhc----CcEEEEeHHHhCCCCc--eEEEE
Confidence            9999999999999   7889999999999999999998522    11222222    2388999999876555  66666


Q ss_pred             -eeC
Q 022213          266 -TND  268 (301)
Q Consensus       266 -~~~  268 (301)
                       +++
T Consensus       232 ~~~~  235 (400)
T 3vax_A          232 TRRR  235 (400)
T ss_dssp             ECBC
T ss_pred             Eecc
Confidence             655

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.91  E-value=7.6e-24  Score=194.07  Aligned_cols=219  Identities=16%  Similarity=0.124  Sum_probs=149.6

Q ss_pred             CCCCeeeccCCCCCCCCCCCC--hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRT--AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~--~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ++..+++++.|.+..  .++.  ++.+.+++.++++...  .|++..+..+++.++++.+.+.++... +++|++|+|++
T Consensus        40 ~g~~~lD~~~~~~~~--~lG~~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~  114 (419)
T 2eo5_A           40 DGNKYLDFTSGIGVN--NLGWPSHPEVIKIGIEQMQKLA--HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGT  114 (419)
T ss_dssp             TSCEEEESSGGGGTT--TTCBSCCHHHHHHHHHHHTTSC--CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHH
T ss_pred             CCCEEEEccCChhhh--ccCCCCCHHHHHHHHHHHhhCc--cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchH
Confidence            467799998887532  1332  6889999999886432  243323334555666666655555332 67999999999


Q ss_pred             HHHHHHHHHhcC-CCCEEEEcCCCCcchHHHHH-hcC-------------ceEEEeecCCCC--CCC------------C
Q 022213          118 QAVEVILSVLAR-PGANVLLPRPGWPYYEGIAQ-RKQ-------------VEVRHFDLLPER--NWE------------V  168 (301)
Q Consensus       118 ~al~~~~~~l~~-~gd~Vl~~~p~~~~~~~~~~-~~g-------------~~~~~~~~~~~~--~~~------------~  168 (301)
                      ++++.+++.+.. +||+|++++|+|+++..... ..|             .+++.++.+...  .|+            +
T Consensus       115 ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~  194 (419)
T 2eo5_A          115 EAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR  194 (419)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHH
Confidence            999999997754 48999999999986533222 111             245666653211  112            3


Q ss_pred             CHHHHH-hhccc----CccEEEEcCCC-CCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          169 DLDAVE-ALADK----NTAAMVIINPG-NPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       169 ~~~~l~-~~~~~----~~~~v~l~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      |++.|+ +.+++    +..++++++|+ ||||. ..+.+++++|.++|++||+++|+||+|.++.+.+.. ..+..++..
T Consensus       195 ~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~-~~~~~~~~~  273 (419)
T 2eo5_A          195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKL-FAIENFNTV  273 (419)
T ss_dssp             HHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCC
T ss_pred             HHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcch-hhHHhcCCC
Confidence            578898 87763    23346667775 57896 668889999999999999999999999987665432 222223323


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      .+++   ||||.++. | +|+||+++++
T Consensus       274 ~d~~---t~sK~~~~-G~~riG~~~~~~  297 (419)
T 2eo5_A          274 PDVI---TLAKALGG-GIMPIGATIFRK  297 (419)
T ss_dssp             CSEE---EECGGGGT-TTSCCEEEEEEG
T ss_pred             CCEE---EecccccC-CccceEEEEEch
Confidence            3444   89999885 9 9999999865

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.91  E-value=1.5e-23  Score=188.77  Aligned_cols=205  Identities=15%  Similarity=0.147  Sum_probs=162.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++++|+.|.|.    +  ++ +.+++.+.+...   .|.+..+..++|+++++++.        .+++++++|+++++
T Consensus         5 ~~~~~~l~~~~~~----~--~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~   66 (374)
T 3uwc_A            5 RVPYSYLERQFAD----I--EP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDAL   66 (374)
T ss_dssp             CBCSCCHHHHTSS----C--HH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHH
T ss_pred             cceeeccccCCCC----c--hH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHH
Confidence            4568899999864    2  33 778888877644   46666788999999999983        23889999999999


Q ss_pred             HHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..+++++ +++||+|+++.|+|.++...++..|.++++++++  .++.+|++.+++.+++++++++   |+||||...+ 
T Consensus        67 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~-  140 (374)
T 3uwc_A           67 AMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD-  140 (374)
T ss_dssp             HHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC-
T ss_pred             HHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC-
Confidence            9999999 8999999999999999999999999999999886  4567899999999987777665   9999999998 


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccch
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKS  276 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~  276 (301)
                        +++|.++|+++|+++|+|++|.... +.....   ..+.    .+++.|+|  |.++.+|. .|++++++       +
T Consensus       141 --~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~---~~~~----d~~~~s~~~~K~l~~~g~-~g~~~~~~-------~  203 (374)
T 3uwc_A          141 --MPALAKIAKKHNLHIVEDACQTILGRINDKFV---GSWG----QFACFSLHPLKNLNVWSD-AGVIITHS-------D  203 (374)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TSSS----SEEEEECSSSSSSCCSSC-CEEEEESC-------H
T ss_pred             --HHHHHHHHHHcCCEEEEeCCCccCceeCCeec---cccc----cEEEEeCCCCCcCCccce-eEEEEeCC-------H
Confidence              8888899999999999999998643 222111   1111    27778866  99876565 88888754       2


Q ss_pred             hHHHHHHhhh
Q 022213          277 GIIDSIKDCL  286 (301)
Q Consensus       277 ~~~~~~~~~~  286 (301)
                      ++.++++...
T Consensus       204 ~~~~~~~~~~  213 (374)
T 3uwc_A          204 EYAEKLRLYR  213 (374)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            4666666544

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.91  E-value=5.3e-24  Score=190.13  Aligned_cols=203  Identities=13%  Similarity=0.123  Sum_probs=148.5

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .+.+|+|+.+.+     .++++.+.+++.+++.. ....|++.....++++.+++++    +   .+++|++|+|+++++
T Consensus         6 ~~~~id~~~~~~-----~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~~~~~gt~a~   72 (356)
T 1v72_A            6 RPPALGFSSDNI-----AGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAAN   72 (356)
T ss_dssp             CCCCCBCSCGGG-----CCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHH
T ss_pred             CCceEeeccCCc-----cCCCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHh----C---CCCcEEEeCCccHHH
Confidence            568999998864     34568888988877532 1234554333455666666655    3   234599999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHH--HHhc--CceEEEeecCCCCCCCCCHHHHHh-hccc-------CccEEEEcC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGI--AQRK--QVEVRHFDLLPERNWEVDLDAVEA-LADK-------NTAAMVIIN  188 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~--~~~~--g~~~~~~~~~~~~~~~~~~~~l~~-~~~~-------~~~~v~l~~  188 (301)
                      ..++++++++||+|+++.|+|..+...  +...  |.+++.++.+   ++.+|++++++ .+++       +++++++++
T Consensus        73 ~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~  149 (356)
T 1v72_A           73 ALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQ  149 (356)
T ss_dssp             HHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred             HHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEc
Confidence            999999999999999999998875544  6666  9999888763   35789999999 8875       578889999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc--CCCCCCCccccCCCCCEEEEecCcccCCCCcceeE--EE
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF--GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFG--WL  264 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~--~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG--~~  264 (301)
                      |+| ||.+++.+++++|+++|++||+++|+|++|..+..  .+..+..+. +....++ ++.|+||. ++   ++|  |+
T Consensus       150 ~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~~~d~-~~~s~sK~-g~---~~G~g~~  222 (356)
T 1v72_A          150 ATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT-WKAGVDA-LSFGATKN-GV---LAAEAIV  222 (356)
T ss_dssp             SCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT-GGGTCCE-EEECCGGG-TC---SSCEEEE
T ss_pred             CCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh-hhhcCCE-EEEecccC-CC---cCccEEE
Confidence            987 99999999999999999999999999999986421  122221111 1112233 45699998 44   455  77


Q ss_pred             Ee
Q 022213          265 VT  266 (301)
Q Consensus       265 ~~  266 (301)
                      ++
T Consensus       223 ~~  224 (356)
T 1v72_A          223 LF  224 (356)
T ss_dssp             ES
T ss_pred             EE
Confidence            76

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.91  E-value=1.9e-23  Score=189.64  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~  160 (301)
                      ...+|++.+++++.      .  +++++++++++|+..++++++++||+|+++.|.|.++...    ++..|.++++++.
T Consensus        60 ~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~  131 (389)
T 3acz_A           60 TVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT  131 (389)
T ss_dssp             HHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence            45689999999982      2  3677777788999999999999999999999999976554    5778999998876


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.+++.++++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..+.+..    ++. +  
T Consensus       132 -------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~----~~~-~--  194 (389)
T 3acz_A          132 -------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK----PLE-L--  194 (389)
T ss_dssp             -------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC----GGG-T--
T ss_pred             -------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC----ccc-c--
Confidence                   4899999999888999999999999999998   8899999999999999999999765421    222 2  


Q ss_pred             CCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhh
Q 022213          241 IVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                       +..+++.|+||.++++|.|+ ||+++++.       +++++++...
T Consensus       195 -~~di~~~S~sK~~~~~~~~~~G~v~~~~~-------~~~~~l~~~~  233 (389)
T 3acz_A          195 -GADIALHSVSKYINGHGDVIGGVSSAKTA-------EDIATIKFYR  233 (389)
T ss_dssp             -TCSEEEEETTTTTTCSSCCCCEEEEESSH-------HHHHHHHHHH
T ss_pred             -CCeEEEECChhhccCCCCceeEEEEECcH-------HHHHHHHHHH
Confidence             23499999999999999998 99998541       3667776654

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.91  E-value=2.3e-23  Score=188.76  Aligned_cols=203  Identities=16%  Similarity=0.189  Sum_probs=159.0

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      ++|+|+.  |.    +  |+.+.+++.+.++..   .|.+..+..++|+++++++.        .+++++|+|+++|+..
T Consensus         9 ~~i~~~~--p~----~--~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~   69 (393)
T 1mdo_A            9 DFLPFSR--PA----M--GAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHI   69 (393)
T ss_dssp             CCBCSCC--CC----C--CHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHH
T ss_pred             cccccCC--CC----C--CHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHH
Confidence            4677765  32    3  356778888888754   24444578899999999992        2479999999999999


Q ss_pred             HHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          123 ILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       123 ~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      +++++ +++||+|+++.|+|.++...++..|.+++.+++++ +++.+|++.+++.+++++++++++   ||||...+   
T Consensus        70 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---  142 (393)
T 1mdo_A           70 ALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---  142 (393)
T ss_dssp             HHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---
T ss_pred             HHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---
Confidence            99999 89999999999999999999999999999999864 346799999999998778877765   48999988   


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      +++|.++|+++|+++|+|++|+. ..+.+.   ++..     ..+++.|+||...++|.|+||++++++       ++++
T Consensus       143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~-----~d~~~~S~~k~K~l~~~~~g~~~~~~~-------~~~~  207 (393)
T 1mdo_A          143 LDAIYALGERYGIPVIEDAAHATGTSYKGR---HIGA-----RGTAIFSFHAIKNITCAEGGIVVTDNP-------QFAD  207 (393)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETTE---ETTS-----SSEEEEECCTTSSSCSSSCEEEEESCH-------HHHH
T ss_pred             HHHHHHHHHHcCCeEEEECccccCCeECCe---ecCC-----CCeEEEeCCCCCccccccceEEEeCCH-------HHHH
Confidence            88889999999999999999996 334321   1111     458999999444455669999998542       4777


Q ss_pred             HHHhhh
Q 022213          281 SIKDCL  286 (301)
Q Consensus       281 ~~~~~~  286 (301)
                      +++...
T Consensus       208 ~l~~~~  213 (393)
T 1mdo_A          208 KLRSLK  213 (393)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            776543

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.91  E-value=7.2e-24  Score=194.72  Aligned_cols=242  Identities=12%  Similarity=0.068  Sum_probs=156.9

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.+++|+.|.+..  .+. .++.+.+++.++++..  ..|....+..++++++++++.+..+  .+.++|++|+|++
T Consensus        26 ~~g~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~   99 (430)
T 3i4j_A           26 DAGRRYLDGSSGALVA--NIGHGRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGS   99 (430)
T ss_dssp             TTSCEEEETTHHHHTC--TTCBCCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHH
T ss_pred             CCCCEEEECCCchhcc--ccCCCCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHH
Confidence            3577899999873321  133 3788999999888753  2344444566778888888777654  4567999999999


Q ss_pred             HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCce---------------EEEeecCCC-CCCCCCHHHH
Q 022213          118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQVE---------------VRHFDLLPE-RNWEVDLDAV  173 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~---------------~~~~~~~~~-~~~~~~~~~l  173 (301)
                      ++++.+++.++.        ++|.|++.+|+|+++.......+..               +..++.... .....|++.|
T Consensus       100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  179 (430)
T 3i4j_A          100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGL  179 (430)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHH
Confidence            999999998873        4789999999999876544443321               222221100 0011255788


Q ss_pred             Hhhccc---CccEEEEcCC-CC-Cccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEE
Q 022213          174 EALADK---NTAAMVIINP-GN-PCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVIT  246 (301)
Q Consensus       174 ~~~~~~---~~~~v~l~~p-~n-ptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~  246 (301)
                      ++.+++   +..++++++| +| ++|. ..+.+++++|.++|++||+++|+||+|.++.+.+. ...+..+ +...+++ 
T Consensus       180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~-~~~~~~~~~~~~di~-  257 (430)
T 3i4j_A          180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS-PLALSRWSGVTPDIA-  257 (430)
T ss_dssp             HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTTCCCSEE-
T ss_pred             HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhhhhcCCCCcEE-
Confidence            887763   3445556666 56 7887 66788899999999999999999999998876553 2233333 3223344 


Q ss_pred             EecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh-----hcccCCCccccccc
Q 022213          247 LGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC-----LSIYSDIPTFIQVC  299 (301)
Q Consensus       247 ~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~q~~  299 (301)
                        +|||+++. | +|+||++++.        ++++.++..     .....+.++++|.+
T Consensus       258 --t~sK~l~~-G~~r~G~~~~~~--------~i~~~~~~~~~~~~~~~t~~~~~~~~aa  305 (430)
T 3i4j_A          258 --VLGKGLAA-GYAPLAGLLAAP--------QVYETVMGGSGAFMHGFTYAGHPVSVAA  305 (430)
T ss_dssp             --EECGGGTT-TSSCCEEEEECH--------HHHHHHHHTTCBCCCCCTTTTCHHHHHH
T ss_pred             --EEcccccC-CccccEEEEECH--------HHHHHHhccCCcccccCCCCCCHHHHHH
Confidence              68999885 9 9999999843        588888763     22234567777654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.91  E-value=8e-24  Score=191.88  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=144.9

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCC-C-CCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYAT-N-SGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANV  134 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~V  134 (301)
                      .++++.+.+++.+.+.    ..|.+ . ....++|+++++++      +.+++ +|++|+|+++++..++++++++||+|
T Consensus        27 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~------~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~v   96 (396)
T 2ch1_A           27 SNCSKRVLTAMTNTVL----SNFHAELFRTMDEVKDGLRYIF------QTENRATMCVSGSAHAGMEAMLSNLLEEGDRV   96 (396)
T ss_dssp             CCCCHHHHHHTTSCCC----CTTCHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhccccc----cCCChhHHHHHHHHHHHHHHHh------CCCCCcEEEECCcHHHHHHHHHHHhcCCCCeE
Confidence            3456677776654432    13533 1 23678999999998      34666 79999999999999999999999999


Q ss_pred             EEcCCCCcchH--HHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          135 LLPRPGWPYYE--GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       135 l~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      ++++|+|.++.  ..++..|.+++.++++.  ++.+|++++++.+++ +++++++++|+||||.+++   +++|+++|++
T Consensus        97 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~  171 (396)
T 2ch1_A           97 LIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQ  171 (396)
T ss_dssp             EEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred             EEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHHHH
Confidence            99999999884  46788899999998753  456999999999887 7999999999999999999   8889999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+++|+|++|...    ..+..+..++   ..+++.|++|.++. +.++||+++++
T Consensus       172 ~~~~li~Dea~~~g----~~~~~~~~~~---~d~~~~s~~K~~~~-~~g~g~~~~~~  220 (396)
T 2ch1_A          172 HDCLLIVDAVASLC----GVPFYMDKWE---IDAVYTGAQKVLGA-PPGITPISISP  220 (396)
T ss_dssp             TTCEEEEECTTTBT----TBCCCTTTTT---CCEEECCCC-CCCC-CSSCEEEEECH
T ss_pred             cCCEEEEEcccccc----CCccchhhcC---cCEEEEcCCccccC-CCCeEEEEECH
Confidence            99999999999832    1222232222   22667899997543 34569998843

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=4.5e-24  Score=190.31  Aligned_cols=187  Identities=18%  Similarity=0.164  Sum_probs=142.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP  137 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~  137 (301)
                      .++++.+.+++.+.+...  ..|....+..++|+++++++      +.+++++++|+|+++++..++++++++||+|+++
T Consensus        10 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~------g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   81 (352)
T 1iug_A           10 VRLHPKALEALARPQLHH--RTEAAREVFLKARGLLREAF------RTEGEVLILTGSGTLAMEALVKNLFAPGERVLVP   81 (352)
T ss_dssp             CCCCHHHHHHHHSCCCCT--TSHHHHHHHHHHHHHHHHHH------TCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCHHHHHHhccCCCCc--cCHHHHHHHHHHHHHHHHHh------CCCCceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence            456788888887665421  11111234678999999998      3456899999999999999999999999999999


Q ss_pred             CCCCcchH--HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC--C
Q 022213          138 RPGWPYYE--GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL--R  213 (301)
Q Consensus       138 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~--~  213 (301)
                      .|+|+++.  ..++..|.+++.++++.  ++.+|++++++   ++++++++++|+||||.+++   +++|.++|+++  |
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~  153 (352)
T 1iug_A           82 VYGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPE  153 (352)
T ss_dssp             ECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTT
T ss_pred             eCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCC
Confidence            99999864  44566899999998754  34578888776   56889999999999999999   78899999999  9


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +++|+|++|....    ....+..+   +..++++|+||+++.+ .++||+++++
T Consensus       154 ~~li~D~a~~~~~----~~~~~~~~---~~d~~~~s~~K~~~~~-~g~G~~~~~~  200 (352)
T 1iug_A          154 GLVGADMVTSLLV----GEVALEAM---GVDAAASGSQKGLMCP-PGLGFVALSP  200 (352)
T ss_dssp             CEEEEECTTTBTT----BCCCSGGG---TCSEEEEESSSTTCCC-SCEEEEEECH
T ss_pred             CEEEEECCccccC----cceecccc---CeeEEEecCcccccCC-CceeEEEECH
Confidence            9999999997421    11122222   2348899999954433 3489999844

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.90  E-value=6.2e-24  Score=190.11  Aligned_cols=199  Identities=14%  Similarity=0.153  Sum_probs=150.1

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC-C-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT-N-SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ++++|+.| |     ..+++.+.+++.+.+.    +.|+. . .+..++|+++++++.    ...+++++++|+|+++++
T Consensus         4 ~~~~~~~g-p-----~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~   69 (366)
T 1m32_A            4 NYLLLTPG-P-----LTTSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAV   69 (366)
T ss_dssp             -CEECSSS-S-----CCCCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHH
T ss_pred             ccccccCC-C-----cCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHH
Confidence            46899988 5     2456778777765321    12321 1 577899999999983    122345799999999999


Q ss_pred             HHHHHHhcCCCCEEEEcC-CCCcc-hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc--CccEEEEcCCCCCcccC
Q 022213          121 EVILSVLARPGANVLLPR-PGWPY-YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK--NTAAMVIINPGNPCGNV  196 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~-p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~  196 (301)
                      ..++++++++||+|++++ ++|.. +...+...|.+++.++++.  ++.+|++.+++.+++  +++++++++|+||||.+
T Consensus        70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~  147 (366)
T 1m32_A           70 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGML  147 (366)
T ss_dssp             HHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred             HHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCccee
Confidence            999999999999988776 55554 5567788899999998753  455899999998875  47888899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          197 FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++   +++|.++|++||+++|+|++|.....    ...+..+   +..++++|+||+++. +.++||+++++
T Consensus       148 ~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~---~~di~~~s~~K~~~~-~~g~G~~~~~~  208 (366)
T 1m32_A          148 NP---IDEVGALAHRYGKTYIVDAMSSFGGI----PMDIAAL---HIDYLISSANKCIQG-VPGFAFVIARE  208 (366)
T ss_dssp             CC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTT---TCSEEEEESSSTTCC-CSSEEEEEEEH
T ss_pred             cC---HHHHHHHHHHcCCEEEEECCccccCc----Ccccccc---CccEEEecCcccccC-CCceEEEEECH
Confidence            99   88999999999999999999985332    1122222   234899999998643 24579999864

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.90  E-value=6e-24  Score=191.55  Aligned_cols=189  Identities=15%  Similarity=0.094  Sum_probs=142.9

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC--CCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA--DDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      .++++.+.+++.+.+...  ..+.......++++.+++++      +.++  ++|++|+|+++++. ++.+++++||+|+
T Consensus        11 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~------~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi   81 (384)
T 3zrp_A           11 TTIKEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVM------GASKNYQPLIIPGGGTSAME-SVTSLLKPNDKIL   81 (384)
T ss_dssp             SCCCHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHH------TCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEE
T ss_pred             CCCCHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHh------CCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEE
Confidence            456677777765544211  01111223456777777777      2344  78999999999999 9999999999999


Q ss_pred             EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      +++|+|++  +...++..|.+++.++++.  ++.+|++.+++.+++ +++++++++|+||||.+++   +++|.++|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~  156 (384)
T 3zrp_A           82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY  156 (384)
T ss_dssp             EECSSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG
T ss_pred             EecCCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc
Confidence            99999965  5566678899999998754  446899999999987 7899999999999999999   88899999999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |+++|+|++|.....    ...+..+   +..+++.|+||+++. +.++||+++++
T Consensus       157 ~~~li~D~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~~~-~~g~g~~~~~~  204 (384)
T 3zrp_A          157 VELIVVDGVSSVGAE----EVKAEEW---NVDVYLTASQKALGS-AAGLGLLLLSP  204 (384)
T ss_dssp             EEEEEEECTTTTTTS----CCCTTTT---TCSEEEEETTSTTCC-CSSEEEEEECH
T ss_pred             CCEEEEECcccccCc----ccccccc---CCCEEEecCcccccC-CCceEEEEECH
Confidence            999999999885332    1122222   234899999998643 24499999843

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.90  E-value=4.1e-23  Score=187.22  Aligned_cols=208  Identities=18%  Similarity=0.226  Sum_probs=155.5

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      -+++++|+.|.|.    +  ++.+.+++.+.+...   .|. +..+..++|+++++++.        .+++++++|+++|
T Consensus        21 ~~~~~~l~~~~p~----~--~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~a   83 (391)
T 3dr4_A           21 MSDLPRISVAAPR----L--DGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTA   83 (391)
T ss_dssp             -------CCCCCC----C--CSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHH
T ss_pred             cCCCceeccCCCC----C--CHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHH
Confidence            3578899999864    2  256778888877654   355 55688999999999993        2378999999999


Q ss_pred             HHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          120 VEVILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       120 l~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      +..++.++ +++||+|+++.|+|.++...++..|.+++++++++ .++.+|++.+++.+++++++++   |+||||...+
T Consensus        84 l~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~  159 (391)
T 3dr4_A           84 LHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQICD  159 (391)
T ss_dssp             HHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC
T ss_pred             HHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChhh
Confidence            99999999 89999999999999999999999999999999864 3467999999999987777766   6789999988


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                         +++|.++|+++|+++|+|++|+... +.+..   ...+. +   +.+.||||..+++|.+.||++++++       +
T Consensus       160 ---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~~-d---i~~~S~s~~K~l~~g~gg~~~~~~~-------~  222 (391)
T 3dr4_A          160 ---MDPILEVARRHNLLVIEDAAEAVGATYRGKK---SGSLG-D---CATFSFFGNAIITTGEGGMITTNDD-------D  222 (391)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS-S---EEEEECBTTSSSCCBSCEEEEESCH-------H
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccccceECCee---ecccC-C---EEEEECCCCCcCCcCCeEEEEECCH-------H
Confidence               8888999999999999999998633 32221   11121 1   7777877333345567899987542       4


Q ss_pred             HHHHHHhhh
Q 022213          278 IIDSIKDCL  286 (301)
Q Consensus       278 ~~~~~~~~~  286 (301)
                      +.++++...
T Consensus       223 ~~~~~~~~~  231 (391)
T 3dr4_A          223 LAAKMRLLR  231 (391)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.90  E-value=2.4e-23  Score=191.74  Aligned_cols=238  Identities=13%  Similarity=0.041  Sum_probs=161.4

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGC  116 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~  116 (301)
                      .+++.+++|+.|.+...  +. .++.+.+++.++++..  ..|....|..++++++++++.+.++.  .. +++++|+|+
T Consensus        40 ~~g~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~gg  113 (439)
T 3dxv_A           40 ENGRELIDLSGAWGAAS--LGYGHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSG  113 (439)
T ss_dssp             TTSCEEEESSTTTTTCT--TCBSCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSH
T ss_pred             CCCCEEEECCCchhhcc--CCCCCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCH
Confidence            35778999999976421  33 6788999999988754  34654556778888888888886542  33 699999999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCce-E--------------EEeecCCCCCCCC-----CHHHHH
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQVE-V--------------RHFDLLPERNWEV-----DLDAVE  174 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~-~--------------~~~~~~~~~~~~~-----~~~~l~  174 (301)
                      +++++.+++.+.  .+++.|++.+|+|+++.......+.. .              ..++..  .....     |++.|+
T Consensus       114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le  191 (439)
T 3dxv_A          114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLT  191 (439)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHH
Confidence            999999999863  36688999999997654444333221 1              122221  11111     689999


Q ss_pred             hhc----ccCccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          175 ALA----DKNTAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       175 ~~~----~~~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      +.+    .++++++++..++|++|.+.+ .+.+++|.++|++||+++|+||+|.++.+.+. ...+..++...+++   |
T Consensus       192 ~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-~~~~~~~~~~~di~---s  267 (439)
T 3dxv_A          192 EKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEGFVPDIL---V  267 (439)
T ss_dssp             HHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS-SSGGGGTTCCCSEE---E
T ss_pred             HHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhcCCCCCEE---E
Confidence            988    345566666666778888665 45599999999999999999999997655443 22333333333444   9


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      |||.++ +|+|+||++++.        ++++.++.... ... .++++|.
T Consensus       268 ~sK~~~-~G~riG~~~~~~--------~~~~~~~~~~~~~t~-~~~~~~~  307 (439)
T 3dxv_A          268 LGKGLG-GGLPLSAVIAPA--------EILDCASAFAMQTLH-GNPISAA  307 (439)
T ss_dssp             ECGGGG-TTSCCEEEEEEH--------HHHTSCSSSSCCTTT-TCHHHHH
T ss_pred             Ecchhc-CCcceEEEEECH--------HHHhhhcCCCcCCCc-ccHHHHH
Confidence            999998 599999999853        46665554322 122 4555544

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.90  E-value=6e-24  Score=197.12  Aligned_cols=210  Identities=15%  Similarity=0.122  Sum_probs=153.8

Q ss_pred             CCCeeeccCCCC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           41 PRPVVPLGYGDP--TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        41 ~~~~i~l~~g~p--~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      +.++++|..|++  +..+.++. +.+.+++.+.+..... .|.+..+..+||+++++++.        .++|++|+|+++
T Consensus        33 g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~-~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~  102 (467)
T 1ax4_A           33 GYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDE-AYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRG  102 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCC-CSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHH
T ss_pred             CcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhccc-ccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHH
Confidence            556677777654  11122222 4566666666654432 68776788999999999982        368999999999


Q ss_pred             HHHHHHHHhcC----CCCE---EEEcCCCCcchHHHHHhcCceEEEeecCC---C-----CCCCCCHHHHHhhccc----
Q 022213          119 AVEVILSVLAR----PGAN---VLLPRPGWPYYEGIAQRKQVEVRHFDLLP---E-----RNWEVDLDAVEALADK----  179 (301)
Q Consensus       119 al~~~~~~l~~----~gd~---Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~---~-----~~~~~~~~~l~~~~~~----  179 (301)
                      |+..++.++++    +||.   |+++.+.|..+...+...|.+++.++...   .     .++.+|++.|++.+++    
T Consensus       103 A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~  182 (467)
T 1ax4_A          103 AENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD  182 (467)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCC
Confidence            99999999998    9998   99887777777778888898888765421   1     1346899999998864    


Q ss_pred             CccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCcc--c--------ccCCCCCCCccccC----CCCCE
Q 022213          180 NTAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGH--L--------TFGSIPYTPMGLFG----SIVPV  244 (301)
Q Consensus       180 ~~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~--~--------~~~~~~~~~~~~~~----~~~~v  244 (301)
                      +++++++++|+||| |.+++.+++++|+++|++||+++|+|+++..  .        .+.+.   ++..+.    ...+ 
T Consensus       183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d-  258 (467)
T 1ax4_A          183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---TIKEVIFDMYKYAD-  258 (467)
T ss_dssp             GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---CHHHHHHHHGGGCS-
T ss_pred             CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---chhhhhhhhccccc-
Confidence            57889999999999 8999999999999999999999999998653  1        12221   111111    1112 


Q ss_pred             EEEecCcccCCCC-cceeEEEEee
Q 022213          245 ITLGSISKRWLVP-GWRFGWLVTN  267 (301)
Q Consensus       245 i~~~s~SK~~~~~-G~rvG~~~~~  267 (301)
                      +++.|+||.++++ |   ||++.+
T Consensus       259 ~~~~s~sK~~g~~~G---g~~~~~  279 (467)
T 1ax4_A          259 ALTMSAKKDPLLNIG---GLVAIR  279 (467)
T ss_dssp             EEEEETTSTTCCSSC---EEEEES
T ss_pred             eEEEeccccCCCCcc---eEEEeC
Confidence            5668999998776 4   667664

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.90  E-value=5e-23  Score=189.05  Aligned_cols=223  Identities=16%  Similarity=0.143  Sum_probs=150.1

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCC---CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKF---NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +++.+++++.+.+...  +. .++.+.+++.++++....   ..|.. ....++++.+++++    +  .++++|++|+|
T Consensus        41 ~g~~ylD~~~~~~~~~--lg~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~--~~~~~v~~~~g  111 (429)
T 1s0a_A           41 DGRRLVDGMSSWWAAI--HGYNHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMT----P--QPLECVFLADS  111 (429)
T ss_dssp             TSCEEEESSTTTTTCT--TCBSCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHS----C--TTCCEEEEESS
T ss_pred             CCCEEEEcCccHhhcc--CCCCCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhC----C--CCCCEEEEeCC
Confidence            4677899988875321  32 578899999988864321   12222 11245555555554    3  46789999999


Q ss_pred             HHHHHHHHHHHhc---C----CCCEEEEcCCCCcchHHHHHhc-C-------------ceEEEeecCC---CCCC-CCCH
Q 022213          116 CKQAVEVILSVLA---R----PGANVLLPRPGWPYYEGIAQRK-Q-------------VEVRHFDLLP---ERNW-EVDL  170 (301)
Q Consensus       116 ~~~al~~~~~~l~---~----~gd~Vl~~~p~~~~~~~~~~~~-g-------------~~~~~~~~~~---~~~~-~~~~  170 (301)
                      ++++++.+++++.   +    |||+|++.+|+|+++....... +             .++..++...   ...+ .+|+
T Consensus       112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  191 (429)
T 1s0a_A          112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence            9999999998764   2    6899999999998754322211 1             1244444421   1123 4789


Q ss_pred             HHHHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          171 DAVEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       171 ~~l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      +.+++.+++  ...++++++|  +||||. ..+.+++++|+++|++||+++|+||+|.++.+.+.. ..+..++...+++
T Consensus       192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~-~~~~~~~~~~d~~  270 (429)
T 1s0a_A          192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL-FACEHAEIAPDIL  270 (429)
T ss_dssp             HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE
T ss_pred             HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchH-HHhhhcCCCCCEE
Confidence            999998863  2334556666  589996 557888999999999999999999999986554321 1222223233444


Q ss_pred             EEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          246 TLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       246 ~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                         |+||.++ +| +|+||+++++        ++++.++.
T Consensus       271 ---t~sK~l~-~G~~~iG~~~~~~--------~~~~~l~~  298 (429)
T 1s0a_A          271 ---CLGKALT-GGTMTLSATLTTR--------EVAETISN  298 (429)
T ss_dssp             ---EECGGGG-TSSSCCEEEEECH--------HHHHHHHT
T ss_pred             ---Eeccccc-CCCccceEEEeCH--------HHHHHhhc
Confidence               7899977 58 9999999843        47777765

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.90  E-value=2.1e-23  Score=187.75  Aligned_cols=194  Identities=18%  Similarity=0.230  Sum_probs=155.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcC
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPR  138 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~  138 (301)
                      .++.+.+++.+.+...   .|.+..+..++|+.+++++.        .+++++++|+++|+..++.++ +++||+|+++.
T Consensus        14 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~   82 (367)
T 3nyt_A           14 IKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITPG   82 (367)
T ss_dssp             HHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             cCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECC
Confidence            4567888888877654   45555678899999999982        248999999999999999999 89999999999


Q ss_pred             CCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213          139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA  218 (301)
Q Consensus       139 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~  218 (301)
                      ++|.++...++..|.++++++++++ ++.+|++.+++.+++++++++   |+||||...+   +++|.++|+++|+++|+
T Consensus        83 ~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~  155 (367)
T 3nyt_A           83 FTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIE  155 (367)
T ss_dssp             SSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEE
T ss_pred             CccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEE
Confidence            9999999999999999999998653 367999999999987777766   8899998888   88888899999999999


Q ss_pred             ccCCccc-ccCCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          219 DEVYGHL-TFGSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       219 D~~y~~~-~~~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      |++|+.. .+.+...   ..+.    .+++.||  +|.++.+|. .|+++.++       +++.++++...
T Consensus       156 D~a~~~g~~~~~~~~---~~~~----di~~~Sf~~~K~l~~~g~-gg~~~~~~-------~~l~~~~~~~~  211 (367)
T 3nyt_A          156 DAAQSFGASYKGKRS---CNLS----TVACTSFFPSAPLGCYGD-GGAIFTND-------DELATAIRQIA  211 (367)
T ss_dssp             ECTTTTTCEETTEET---TSSS----SEEEEECCTTSSSCCSSC-CEEEEESC-------HHHHHHHHHHT
T ss_pred             ECccccCCeECCeec---cCCC----CEEEEECCCCCcCCCcCc-eeEEEeCC-------HHHHHHHHHHH
Confidence            9999853 3333222   2222    2788887  899887676 88888754       34777776654

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.8e-23  Score=188.47  Aligned_cols=156  Identities=19%  Similarity=0.146  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~  162 (301)
                      .+|++.+++++    +    .+++++++|+++|+..++++++++||+|+++.|.|.++...+.    ..|.++++++.. 
T Consensus        84 ~~l~~~la~~~----g----~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-  154 (414)
T 3ndn_A           84 SVFEERLRLIE----G----APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-  154 (414)
T ss_dssp             HHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             HHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence            45566666655    2    3678999999999999999999999999999999998766664    489999998762 


Q ss_pred             CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                            |++.+++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.    .++ .++   
T Consensus       155 ------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----~~~-~~g---  217 (414)
T 3ndn_A          155 ------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ----QGF-PLG---  217 (414)
T ss_dssp             ------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----CCG-GGT---
T ss_pred             ------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hcC---
Confidence                  889999999989999999999999999998   888999999999999999999854322    112 111   


Q ss_pred             CEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          243 PVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      ..+++.|+||.++.+| +++||+++++
T Consensus       218 ~div~~S~sK~l~~~G~~~~G~vv~~~  244 (414)
T 3ndn_A          218 VDVVVYSGTKHIDGQGRVLGGAILGDR  244 (414)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             CCeEeccCCccccCCCCceEEEEEECH
Confidence            2388999999999888 8999999854

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.90  E-value=4.3e-23  Score=182.93  Aligned_cols=178  Identities=16%  Similarity=0.127  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLLPE  163 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~  163 (301)
                      +|++.+++++.      .+  +.++++++++++..++.+++++||+|+++.|+|.++...+    +..|.++..++.   
T Consensus         2 ~l~~~la~~~g------~~--~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---   70 (331)
T 1pff_A            2 ALEGKIAKLEH------AE--ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---   70 (331)
T ss_dssp             HHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred             hHHHHHHHHhC------CC--eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence            68999999982      23  4445555589999999999999999999999999876554    458999988875   


Q ss_pred             CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK-LRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                          .|++.+++.++++++++++++|+||||.+++   +++|.++|++ +|+++|+|++|....+.    .++ .   .+
T Consensus        71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~----~~~-~---~~  135 (331)
T 1pff_A           71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL-D---LG  135 (331)
T ss_dssp             ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG-G---GT
T ss_pred             ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC----Chh-h---cC
Confidence                4788999999888899999999999999998   8999999999 99999999999976542    122 1   23


Q ss_pred             CEEEEecCcccCCCCcce-eEEEEeeCCCCcccchhHHHHHHhhhcc--cCCCcccccc
Q 022213          243 PVITLGSISKRWLVPGWR-FGWLVTNDPNGIFQKSGIIDSIKDCLSI--YSDIPTFIQV  298 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~r-vG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~  298 (301)
                      ..+++.|+||.++++|.| +||+++++       ++++++++.....  ..+.+++.|.
T Consensus       136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~  187 (331)
T 1pff_A          136 VDIVVHSATKYINGHTDVVAGLVCSRA-------DIIAKVKSQGIKDITGAIISPHDAW  187 (331)
T ss_dssp             CSEEEEETTTTTSSSSSCCCEEEEECH-------HHHHHHHHTCCCCCCCCCCCHHHHH
T ss_pred             CcEEEEECccccCCCCCceEEEEEeCc-------HHHHHHHHHHHHhhcCCCCCHHHHH
Confidence            459999999999999999 79998843       1477777765443  2345555443

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.90  E-value=4.8e-23  Score=187.24  Aligned_cols=180  Identities=22%  Similarity=0.170  Sum_probs=143.3

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~  160 (301)
                      ...+|++.+++++.        .+++++++|+++|++.++.+++++||+|+++.|.|.++...+    +..|.++.+++.
T Consensus        67 ~~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~  138 (392)
T 3qhx_A           67 TRTALEAALAAVED--------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVAL  138 (392)
T ss_dssp             HHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCC
Confidence            45678888888872        247999999999999999999999999999999999776655    667999998876


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.++++++++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.......    ++ .+  
T Consensus       139 -------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~----~~-~~--  201 (392)
T 3qhx_A          139 -------ADLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ----PL-SL--  201 (392)
T ss_dssp             -------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC----GG-GG--
T ss_pred             -------CCHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC----hH-Hh--
Confidence                   2899999999989999999999999999998   8899999999999999999998643221    11 11  


Q ss_pred             CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccc
Q 022213          241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQ  297 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q  297 (301)
                       +..+++.|+||.++.+| .|+||+++++.       ++..+++.... ...+.+++.+
T Consensus       202 -~~di~~~S~sK~lg~~g~~~~G~v~~~~~-------~~~~~l~~~~~~~g~~~~~~~~  252 (392)
T 3qhx_A          202 -GADVVLHSTTKYIGGHSDVVGGALVTNDE-------ELDQSFAFLQNGAGAVPGPFDA  252 (392)
T ss_dssp             -TCSEEEEETTTTTTCSSCCCCEEEEESCH-------HHHHHHHHHHHHHCCCCCHHHH
T ss_pred             -CCcEEEEcCccccCCCCCceEEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHH
Confidence             22389999999999887 89999998542       46676666543 2334444443

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.90  E-value=3.4e-23  Score=189.87  Aligned_cols=210  Identities=14%  Similarity=0.090  Sum_probs=150.3

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+++|+.|.....-.+ .++.+.+++.++++...  .+.. .+..++++++++.+.+..+    .++|++|+|+++
T Consensus        54 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~--~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggte  125 (420)
T 2pb2_A           54 QQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLW--HTSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTE  125 (420)
T ss_dssp             TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCC--CCCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHH
T ss_pred             CCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhcc--cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHH
Confidence            35778999988821100112 56789999999886432  2221 2234566666666666443    579999999999


Q ss_pred             HHHHHHHHhcC-------CC-CEEEEcCCCCcchH-HHHHhcCce------------EEEeecCCCCCCCCCHHHHHhhc
Q 022213          119 AVEVILSVLAR-------PG-ANVLLPRPGWPYYE-GIAQRKQVE------------VRHFDLLPERNWEVDLDAVEALA  177 (301)
Q Consensus       119 al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~-~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~~  177 (301)
                      |++.+++++..       +| ++|++++|+|+++. ..+...|.+            +..++.       .|++.|++.+
T Consensus       126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i  198 (420)
T 2pb2_A          126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVM  198 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHh
Confidence            99999998875       77 59999999998763 334444433            333332       3899999999


Q ss_pred             ccCccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          178 DKNTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       178 ~~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                      ++++++++++.++|++|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ .+..++...+++   ||||.++ 
T Consensus       199 ~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~~~~~~~~dii---t~sK~l~-  273 (420)
T 2pb2_A          199 DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDIL---TSAKALG-  273 (420)
T ss_dssp             CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGGG-
T ss_pred             ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HHHhcCCCCCeE---Eeccccc-
Confidence            888888888777888884 6999999999999999999999999998776654322 222222233444   7899988 


Q ss_pred             CcceeEEEEeeC
Q 022213          257 PGWRFGWLVTND  268 (301)
Q Consensus       257 ~G~rvG~~~~~~  268 (301)
                      +|+|+||+++++
T Consensus       274 ~G~~iG~~~~~~  285 (420)
T 2pb2_A          274 GGFPVSAMLTTQ  285 (420)
T ss_dssp             TTSCCEEEEECH
T ss_pred             CCCceEEEEEhH
Confidence            899999999853

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.90  E-value=4.7e-23  Score=188.00  Aligned_cols=185  Identities=15%  Similarity=0.127  Sum_probs=142.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCce
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVE  154 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~  154 (301)
                      .|+. .+..+||+.+++++..      + +.|++++| ++|+..+++ ++++||+|+++.|.|.+....    ++..|++
T Consensus        63 r~~~-p~~~~l~~~la~~~g~------~-~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~  132 (403)
T 3cog_A           63 RSGN-PTRNCLEKAVAALDGA------K-YCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLK  132 (403)
T ss_dssp             ---C-HHHHHHHHHHHHHHTC------S-EEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred             CCCC-chHHHHHHHHHHHhCC------C-cEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence            4544 3567999999999832      2 45666655 699999999 889999999999999974443    3567999


Q ss_pred             EEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CeEEEccCCcccccCCCCCC
Q 022213          155 VRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR-VMVVADEVYGHLTFGSIPYT  233 (301)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~-~~ii~D~~y~~~~~~~~~~~  233 (301)
                      +++++..       |++.+++.++++++++++++|+||||.+++   +++|+++|+++| +++|+|++|..+.+..    
T Consensus       133 v~~v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~----  198 (403)
T 3cog_A          133 ISFVDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR----  198 (403)
T ss_dssp             EEEECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC----
T ss_pred             EEEECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC----
Confidence            9988762       789999999888999999999999999998   899999999999 9999999999866431    


Q ss_pred             CccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccc
Q 022213          234 PMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQV  298 (301)
Q Consensus       234 ~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~  298 (301)
                      ++. +   +..++++|+||.++++| .|+||+++++       ++++++++.... ...+.+++.|.
T Consensus       199 ~~~-~---~~div~~S~sK~~~g~~~~~~G~v~~~~-------~~l~~~l~~~~~~~g~~~~~~~~~  254 (403)
T 3cog_A          199 PLA-L---GADISMYSATKYMNGHSDVVMGLVSVNC-------ESLHNRLRFLQNSLGAVPSPIDCY  254 (403)
T ss_dssp             TTT-T---TCSEEEEETTTTTTCSSCCCCEEEEECC-------HHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             ccc-c---CCeEEEEcChhhccCCCCCeEEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHH
Confidence            221 2   34599999999999876 5799999854       247777766543 23345555554

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.90  E-value=9e-23  Score=185.74  Aligned_cols=159  Identities=23%  Similarity=0.244  Sum_probs=131.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~  159 (301)
                      ....++++.+++++.      .  ++.++++++++|+..++.+++++||+|+++.|.|.++...+    ...|.++.+++
T Consensus        65 ~~~~~l~~~la~~~g------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~  136 (398)
T 1gc0_A           65 PTLNLLEARMASLEG------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD  136 (398)
T ss_dssp             HHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred             hHHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence            346678888888872      2  25666666689999999999999999999999999876655    66789988887


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .       .|++.+++.++++++++++++|+||||.+++   +++|+++|+++|+++|+|++|....+..    ++ .+ 
T Consensus       137 ~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~-~~-  200 (398)
T 1gc0_A          137 M-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL-EL-  200 (398)
T ss_dssp             T-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG-GG-
T ss_pred             C-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hh-
Confidence            5       3899999999888999999999999999998   8999999999999999999999765531    12 12 


Q ss_pred             CCCCEEEEecCcccCCCCccee-EEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPGWRF-GWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~  268 (301)
                        +..+++.|+||.++++|.|+ ||+++++
T Consensus       201 --~~d~~~~S~sK~~~~~~~~~~G~l~~~~  228 (398)
T 1gc0_A          201 --GADLVVHSATKYLSGHGDITAGIVVGSQ  228 (398)
T ss_dssp             --TCSEEEEETTTTTTCSSSCCCEEEEECH
T ss_pred             --CceEEEECCccccCCCCCCeEEEEEECh
Confidence              23489999999999999998 9998743

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.90  E-value=1.5e-22  Score=185.06  Aligned_cols=183  Identities=21%  Similarity=0.208  Sum_probs=145.0

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEE
Q 022213           57 CFRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV  134 (301)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~V  134 (301)
                      .++.++.+.+++.   .. ..+.|+..  ....++++.+++++.        .+++++++|+++|+..++.+++++||+|
T Consensus        31 ~~~~~~~~~~~~~---~~-~~~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~~~gd~v   98 (412)
T 2cb1_A           31 GFKTLEEGQERFA---TG-EGYVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALLRPGDEV   98 (412)
T ss_dssp             CCSSHHHHHHHHH---HC-CSCSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTCEE
T ss_pred             ecCChHHHHHHhc---cc-cCcCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEE
Confidence            3666777666553   22 23356643  346788899999882        2489999999999999999999999999


Q ss_pred             EEcCCCCcchHHH----HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          135 LLPRPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       135 l~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      +++.|.|.+....    ++..|.++++++.        +++++++.++++++++++++|+||||.+++   +++|+++|+
T Consensus        99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~  167 (412)
T 2cb1_A           99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAE  167 (412)
T ss_dssp             EEETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHH
T ss_pred             EEeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHH
Confidence            9999999875444    3457889888864        389999999888999999999999999998   899999999


Q ss_pred             hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++|+++|+|++|..+.+..   .+. .   .+..+++.|+||.+++||.|+|++++.+.
T Consensus       168 ~~~~~li~D~~~~~~~~~~---~~~-~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~  219 (412)
T 2cb1_A          168 EAGVALVVDNTFGAAGALC---RPL-A---WGAHVVVESLTKWASGHGSVLGGAVLSRE  219 (412)
T ss_dssp             HHTCEEEEECGGGTTTTSC---CGG-G---GTCSEEEEETTTTTTCSSCCCCEEEEECC
T ss_pred             HcCCEEEEECCCccccccC---Ccc-c---cCCeEEEECCcccccCCCCcEEEEEEecc
Confidence            9999999999998752211   111 1   12459999999999999999999988764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.90  E-value=2.8e-22  Score=182.21  Aligned_cols=192  Identities=14%  Similarity=0.195  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCC--CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSG--IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPR  138 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~  138 (301)
                      +.+.+++.+.+..    .|.+..|  ..++|+++++++.        .+++++|+|+++++..+++++ +++||+|+++.
T Consensus        12 ~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~   79 (394)
T 1o69_A           12 GNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASS   79 (394)
T ss_dssp             CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             HHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence            4577788877764    3555557  8899999999982        268999999999999999999 89999999999


Q ss_pred             CCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 022213          139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM  215 (301)
Q Consensus       139 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~  215 (301)
                      |+|.++...++..|.+++.++++  .++.+|++.+++.+++   +++++++++   |||...+   +++|.++|+++|++
T Consensus        80 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~  151 (394)
T 1o69_A           80 FTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKENDIV  151 (394)
T ss_dssp             SSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCE
T ss_pred             CccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCE
Confidence            99999999999999999999885  4567999999998876   688888875   8998877   88888999999999


Q ss_pred             EEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          216 VVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       216 ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +|+|++|. .+.+.+....   .+.   + +.+.|+||..+++|.|+||+++++       ++++++++....
T Consensus       152 li~Dea~~~g~~~~~~~~~---~~~---~-~~~~s~s~~K~l~~~~~G~~~~~~-------~~l~~~l~~~~~  210 (394)
T 1o69_A          152 LIEDAAEALGSFYKNKALG---TFG---E-FGVYSYNGNKIITTSGGGMLIGKN-------KEKIEKARFYST  210 (394)
T ss_dssp             EEEECTTCTTCEETTEETT---SSS---S-EEEEECCTTSSSCCSSCEEEEESC-------HHHHHHHHHHTB
T ss_pred             EEEECcCcccceeCCcccc---ccc---C-cEEEEEeCCccCCCCCceEEEECC-------HHHHHHHHHHHH
Confidence            99999999 5555432211   111   1 455566544455678999999854       247777776543

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.90  E-value=7.7e-23  Score=185.32  Aligned_cols=181  Identities=19%  Similarity=0.235  Sum_probs=141.9

Q ss_pred             CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEee
Q 022213           84 SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFD  159 (301)
Q Consensus        84 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~  159 (301)
                      .+..++++.+++++.      .+ +.|++++| ++++..++++++++||+|+++.|+|.+....    ++..|.++..++
T Consensus        52 ~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~  123 (386)
T 1cs1_A           52 PTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD  123 (386)
T ss_dssp             HHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             ccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence            356789999999983      23 56666555 9999999999999999999999999974432    366788888887


Q ss_pred             cCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          160 LLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                      .       .|++.+++.++++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..+.+..    ++ .+ 
T Consensus       124 ~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~-~~-  187 (386)
T 1cs1_A          124 Q-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----PL-AL-  187 (386)
T ss_dssp             T-------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG-GG-
T ss_pred             C-------CCHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----cc-cc-
Confidence            5       2889999999888999999999999999998   8889999999999999999999876531    12 12 


Q ss_pred             CCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhhcc-cCCCccccc
Q 022213          240 SIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCLSI-YSDIPTFIQ  297 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q  297 (301)
                        +..+++.|+||.++.+|.|+ ||++++++       +++++++..... ..+.+.+.|
T Consensus       188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~  238 (386)
T 1cs1_A          188 --GADLVLHSCTKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDS  238 (386)
T ss_dssp             --TCSEEEEETTTTTTCSSCCCCEEEEESSH-------HHHHHHHHHHHHHTCBCCHHHH
T ss_pred             --CceEEEEcCcccccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHH
Confidence              34599999999999999997 99998542       466777655432 223444444

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.89  E-value=1e-22  Score=183.31  Aligned_cols=208  Identities=12%  Similarity=0.117  Sum_probs=149.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      ...+|+.|-      .++|+.+.+++.+.+.    ..|.+  +..++++++.+++.+.++...+.+.+++|+|++++++.
T Consensus        19 ~~~~~~pgp------~~~~~~v~~a~~~~~~----~~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~   86 (376)
T 3f0h_A           19 GMLNFTVGP------VMSSEEVRAIGAEQVP----YFRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEA   86 (376)
T ss_dssp             SCEECSSSS------CCCCHHHHHHHTSCCC----CCSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHH
T ss_pred             CceeecCCC------CCCcHHHHHHhcCCCC----CCCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHH
Confidence            345665552      4567778777755432    12222  23355555555555544533222445669999999999


Q ss_pred             HHHHhcCCCCEEEEcCCCCcchH--HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          123 ILSVLARPGANVLLPRPGWPYYE--GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ++++++++||+|+++.|.|.+..  ..+...|.++..++.+.  ++.+|++.+++.++++++++++++|+||||.+++  
T Consensus        87 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~--  162 (376)
T 3f0h_A           87 VVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH--GKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD--  162 (376)
T ss_dssp             HHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT--TCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC--
T ss_pred             HHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHhhccCceEEEEecccCCcceecC--
Confidence            99999999999999998777643  34677899999888753  4669999999988888999999999999999999  


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeCCCCcccchhHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                       +++|+++|++||+++|+|+++.....    ...+..++   ..+++.|+||+++ .+|  +|++++++        +++
T Consensus       163 -l~~i~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~---~d~~~~s~~K~l~~~~G--~g~~~~~~--------~~~  224 (376)
T 3f0h_A          163 -TMMIGEFCKKNNMFFVCDCVSAFLAD----PFNMNECG---ADVMITGSQKVLACPPG--ISVIVLAP--------RGV  224 (376)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHT---CSEEEEETTTTTCCCSS--CEEEEECH--------HHH
T ss_pred             -HHHHHHHHHHcCCEEEEEcCccccCc----cccccccC---ccEEEecCcccccCCCc--eEEEEECH--------HHH
Confidence             88999999999999999999886432    11222221   2388999999987 566  57777633        466


Q ss_pred             HHHHh
Q 022213          280 DSIKD  284 (301)
Q Consensus       280 ~~~~~  284 (301)
                      ++++.
T Consensus       225 ~~~~~  229 (376)
T 3f0h_A          225 ERVEK  229 (376)
T ss_dssp             HHHHT
T ss_pred             HHhhc
Confidence            66654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.89  E-value=1.3e-23  Score=187.15  Aligned_cols=188  Identities=15%  Similarity=0.092  Sum_probs=143.6

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLL  136 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~  136 (301)
                      .++++.+.+++.+.+..   +.|.. ..+..++|+++++++    +...+++++++|+|+++++..+++++++  |+|++
T Consensus         9 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~   79 (353)
T 2yrr_A            9 TPIPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR--GPVLV   79 (353)
T ss_dssp             CCCCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred             CCCCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence            46677888887665542   12321 234678888888887    2233467899999999999999999976  89999


Q ss_pred             cCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 022213          137 PRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLR  213 (301)
Q Consensus       137 ~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~  213 (301)
                      +++.|+++  ...++..|.+++.++++.  ++.+|++.+++.+++ +++++++++|+||||.+++   +++|.++|+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~  154 (353)
T 2yrr_A           80 LVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEAG  154 (353)
T ss_dssp             EECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHT
T ss_pred             EcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHcC
Confidence            99999875  455677899999999854  456899999999887 8899999999999999999   778899999999


Q ss_pred             CeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeC
Q 022213          214 VMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTND  268 (301)
Q Consensus       214 ~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~  268 (301)
                      +++|+|++|....    .+.++..++   ..+++.|++|+++ .+|  +||+++++
T Consensus       155 ~~li~D~a~~~~~----~~~~~~~~~---~d~~~~s~~K~~~~~~g--~G~~~~~~  201 (353)
T 2yrr_A          155 ALFFLDAVTTLGM----LPFSMRAMG---VDYAFTGSQKCLSAPPG--LAPIAASL  201 (353)
T ss_dssp             CEEEEECTTTTTT----SCCCHHHHT---CSEEECCTTSTTCCCSS--CEEEEECH
T ss_pred             CeEEEEcCccccc----ccccccccC---ceEEEecCcccccCCCc--eEEEEECH
Confidence            9999999996422    122333332   2388889999644 456  79999854

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.89  E-value=3.6e-23  Score=188.13  Aligned_cols=167  Identities=19%  Similarity=0.146  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~  160 (301)
                      +..++|+.+|+++.      .+  ++++++++++|++.+++ ++++||+|+++.|.|.+...    .++..|.+++++++
T Consensus        56 ~~~~lr~~la~~~g------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  126 (393)
T 1n8p_A           56 NRENLERAVAALEN------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND  126 (393)
T ss_dssp             HHHHHHHHHHHHTT------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred             hHHHHHHHHHHHhC------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence            46789999999982      22  56666666999999999 88999999999999985444    34567889888876


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC----CCeEEEccCCcccccCCCCCCCcc
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL----RVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~----~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                      +       | +++++++++++++|++++|+||||.+++   +++|+++|+++    |+++|+|++|..+.+.  .+  . 
T Consensus       127 ~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~--~~--~-  190 (393)
T 1n8p_A          127 L-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS--NP--L-  190 (393)
T ss_dssp             H-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC--CG--G-
T ss_pred             C-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC--CH--H-
Confidence            2       6 8899999888999999999999999998   88889999999    9999999999987653  11  1 


Q ss_pred             ccCCCCCEEEEecCcccCCCCccee-EEEEeeCCCCcccchhHHHHHHhhh
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRF-GWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rv-G~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      .+   +..+++.|+||.++.+|+|+ ||+++++       ++++++++...
T Consensus       191 ~~---~~di~~~S~sK~~g~~G~rigG~~~~~~-------~~~~~~l~~~~  231 (393)
T 1n8p_A          191 NF---GADIVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQ  231 (393)
T ss_dssp             GG---TCSEEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHH
T ss_pred             Hc---CCeEEEEECcccccCCCCceeEEEEeCC-------HHHHHHHHHHH
Confidence            22   24499999999999999999 9998743       24667766553

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.89  E-value=1e-22  Score=185.67  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=134.3

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~  162 (301)
                      ..++++.+++++    +  .++++++ +++|+++++..++++++++||+|++++|+|++  +...++..|.+++.++++.
T Consensus        46 ~~~l~~~la~~~----g--~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  119 (416)
T 3isl_A           46 MNETMEMLRELF----Q--TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW  119 (416)
T ss_dssp             HHHHHHHHHHHT----T--CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHh----C--CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC
Confidence            345556666655    3  4556555 88999999999999999999999999999987  6677888999999999864


Q ss_pred             CCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          163 ERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      .  +.+|++++++.++ .+++++++++|+||||.+.+   +++|.++|++||+++|+|++|+....    ...+..+   
T Consensus       120 ~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~~---  187 (416)
T 3isl_A          120 G--TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC----EVKVDEW---  187 (416)
T ss_dssp             T--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS----CCCTTTT---
T ss_pred             C--CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC----Ccchhhc---
Confidence            3  4589999999997 58999999999999999999   88899999999999999999875221    1122222   


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      +..+++.|+||+++ .+.++||+++++        +++++++.
T Consensus       188 ~~d~~~~s~~K~l~-g~~g~g~~~~~~--------~~~~~~~~  221 (416)
T 3isl_A          188 KIDAAIGGTQKCLS-VPSGMAPITYNE--------RVADVIAA  221 (416)
T ss_dssp             TCSEEECCSSSTTC-CCSSEEEEEECH--------HHHHHHHT
T ss_pred             CCCEEEecCccccC-CCCCeEEEEECH--------HHHHHhhc
Confidence            23489999999733 334589998743        46666653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.89  E-value=8.6e-23  Score=185.83  Aligned_cols=197  Identities=14%  Similarity=0.106  Sum_probs=147.1

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCC-EEEcCCHHHHHHHHHHHhcCCCCEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADD-VYVTLGCKQAVEVILSVLARPGANV  134 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~t~g~~~al~~~~~~l~~~gd~V  134 (301)
                      .++++.+.+++.+.+    ...|.+.  ....++++.+++++    +  .+.++ +++++|+++++..++.+++++||+|
T Consensus        22 ~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~sgt~al~~~~~~~~~~gd~V   91 (411)
T 3nnk_A           22 INADPRVLRAMSSQL----IGQYDPAMTHYMNEVMALYRGVF----R--TENRWTMLVDGTSRAGIEAILVSAIRPGDKV   91 (411)
T ss_dssp             CCCCHHHHHHHTSCC----CCTTCHHHHHHHHHHHHHHHHHH----T--CCCSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhhccc----cccccHHHHHHHHHHHHHHHHHh----C--CCCCcEEEECCCcHHHHHHHHHHhcCCCCEE
Confidence            455677777665432    2223221  12345666666666    2  34444 8889999999999999999999999


Q ss_pred             EEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          135 LLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       135 l~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      +++.|+|++  +...++..|.+++.++++  .++.+|++.+++.+++ +++++++++|+||||.+.+   +++|+++|++
T Consensus        92 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~  166 (411)
T 3nnk_A           92 LVPVFGRFGHLLCEIARRCRAEVHTIEVP--WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRR  166 (411)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred             EEecCCchHHHHHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHH
Confidence            999999987  888888999999999974  3456899999999976 8999999999999999999   8889999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      ||+++|+|+++....    ....+..+   +..+++.|+||+++. +.++||+++++        +++++++..
T Consensus       167 ~~~~li~Dea~~~~~----~~~~~~~~---~~d~~~~s~~K~l~~-~~g~g~~~~~~--------~~~~~~~~~  224 (411)
T 3nnk_A          167 YDALFYTDATASLGG----NPLETDVW---GLDAVSAGMQKCLGG-PSGTSPITLSA--------RMEEAIRRR  224 (411)
T ss_dssp             HTCEEEEECTTTBTT----BCCCTTTT---TCSEEECCSTTTTCC-CSSEEEEEECH--------HHHHHHHTT
T ss_pred             cCCEEEEECCcccCC----cccchhcc---CCcEEEecCccccCC-CCceEEEEECH--------HHHHHHhhc
Confidence            999999999987522    11122222   234899999998433 34689999843        477777654

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.89  E-value=2.2e-22  Score=182.65  Aligned_cols=232  Identities=13%  Similarity=0.101  Sum_probs=158.5

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.++||+.|.+..  .++ .++.+.+++.++++...   |....+..++++++++++.+..+    .++|++|+|++
T Consensus        33 ~~g~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~  103 (395)
T 3nx3_A           33 DKAKKYLDFSSGIGVC--ALGYNHAKFNAKIKAQVDKLL---HTSNLYYNENIAAAAKNLAKASA----LERVFFTNSGT  103 (395)
T ss_dssp             TTCCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHTTCS---CCCTTSBCHHHHHHHHHHHHHHT----CSEEEEESSHH
T ss_pred             CCCCEEEECCCcHHhc--cCCCCCHHHHHHHHHHHHhcc---ccccccCCHHHHHHHHHHHHhcC----CCeEEEeCCHH
Confidence            3578899999884321  132 56889999998886432   21122334556666666655433    57999999999


Q ss_pred             HHHHHHHHHhc-------CCCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCCCCCCCCHHHHHhhc
Q 022213          118 QAVEVILSVLA-------RPGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPERNWEVDLDAVEALA  177 (301)
Q Consensus       118 ~al~~~~~~l~-------~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~l~~~~  177 (301)
                      +|++.+++.+.       .++|+|++.+|+|+++.......+             .++..++.       .|++.|++.+
T Consensus       104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l  176 (395)
T 3nx3_A          104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLV  176 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhc
Confidence            99999998876       357999999999987643333322             23333332       3799999999


Q ss_pred             ccCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          178 DKNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       178 ~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                      +++++++++..++|++|.. .+.+++++|.++|++||+++|+||+|.++.+.+. ......++...+   +.++||.++.
T Consensus       177 ~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~d---~~t~sK~~~~  252 (395)
T 3nx3_A          177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQILPD---IMTSAKALGC  252 (395)
T ss_dssp             CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCS---EEEECGGGTT
T ss_pred             cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc-chhHHhcCCCCC---EEEecccccC
Confidence            8777888777777777776 6788899999999999999999999998755443 222222322223   3378999875


Q ss_pred             CcceeEEEEeeCCCCcccchhH-HHHHHhhhc-ccCCCccccccc
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGI-IDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                       |+|+||+++++        ++ ++.++.... ...+.++++|.+
T Consensus       253 -G~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a  288 (395)
T 3nx3_A          253 -GLSVGAFVINQ--------KVASNSLEAGDHGSTYGGNPLVCAG  288 (395)
T ss_dssp             -TSCCEEEEECH--------HHHHHHSCTTCCSSCBSCCHHHHHH
T ss_pred             -CCceEEEEEch--------hhhhhhcCCcccCCCCCCCHHHHHH
Confidence             99999999843        45 666655432 233455565543

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.89  E-value=2.3e-22  Score=189.00  Aligned_cols=183  Identities=15%  Similarity=0.127  Sum_probs=149.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHHhcCCC--------CEEEEcCCCCcchHHHH
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSVLARPG--------ANVLLPRPGWPYYEGIA  148 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~l~~~g--------d~Vl~~~p~~~~~~~~~  148 (301)
                      .|....+..++++++++++.+.+|...+++++  ++|+|+++++..+++++.++|        |+|+++.|+|.++...+
T Consensus       130 ~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~  209 (514)
T 3mad_A          130 HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA  209 (514)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHH
Confidence            44444456788888888888877765555788  999999999999999998776        99999999999999999


Q ss_pred             HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccC
Q 022213          149 QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG  228 (301)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~  228 (301)
                      +..|++++.++++.  ++.+|++.|+++++++++++++++|+||||.+.+   +++|.++|++||+++|+|++|..+.+.
T Consensus       210 ~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~  284 (514)
T 3mad_A          210 QYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILP  284 (514)
T ss_dssp             HHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHH
T ss_pred             HHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEecccccccch
Confidence            99999999998854  5679999999999988999999999999999999   788999999999999999999987541


Q ss_pred             -----CCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          229 -----SIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       229 -----~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                           +....++.. ...+-.+++.|++|. +.+|.++||+++++
T Consensus       285 ~~~~~g~~~~~~~~-~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~  327 (514)
T 3mad_A          285 WAERLGYPVPPFDF-RLEGVTSVSADTHKY-GYGAKGTSVILYRR  327 (514)
T ss_dssp             HHHHTTCCCCCCST-TSTTCCEEEECTTTT-TCCCSSCEEEEESS
T ss_pred             hHHhcCCCCCcccc-cCCCCcEEEECchhc-cCCCCCeEEEEEeC
Confidence                 111112211 111224888999998 56778999999865

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.89  E-value=8.9e-23  Score=188.90  Aligned_cols=242  Identities=14%  Similarity=0.058  Sum_probs=163.1

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      +++.+|||..|.+..  .+. .++.+.+++.++++..  ..|....+..+.+.++++++.+..+.. ..++|++|+|+++
T Consensus        62 ~G~~ylD~~~~~~~~--~lGh~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGse  136 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVT--TVGASHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAE  136 (453)
T ss_dssp             TSCEEEESSHHHHTC--TTCTTCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHH
T ss_pred             CCCEEEEcCCCcccC--cCCCCCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHH
Confidence            467788888773221  122 4788999999988754  245544566778888888887755421 3579999999999


Q ss_pred             HHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCc--------------eEEEeecCC--CCCCCCC--------HHH
Q 022213          119 AVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQV--------------EVRHFDLLP--ERNWEVD--------LDA  172 (301)
Q Consensus       119 al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~--------------~~~~~~~~~--~~~~~~~--------~~~  172 (301)
                      |++.+++.+..  .+++|++.+++|+++.......+.              .+..++...  .+.++.+        ++.
T Consensus       137 A~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  216 (453)
T 4ffc_A          137 AVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISR  216 (453)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHH
Confidence            99999987753  458999999999976544433321              344444421  1112233        355


Q ss_pred             HHhhcccCccEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          173 VEALADKNTAAMVIINPGNPCG--NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       173 l~~~~~~~~~~v~l~~p~nptG--~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      |++.+..+..+++++.|+|++|  ...+.+.+++|.++|++||+++|+||+|..+.+.+. ......++...+   +.+|
T Consensus       217 l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~a~~~~~~~pd---i~t~  292 (453)
T 4ffc_A          217 IETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEGIVPD---IVTM  292 (453)
T ss_dssp             HHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCS---EEEE
T ss_pred             HHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc-cchhhhcCCCcc---hHhh
Confidence            6666655667788889988877  455778899999999999999999999998765543 222222222223   3478


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++. |+|+||++++.        ++++.++.... ...+.++++|.+
T Consensus       293 sK~~~~-G~~~G~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aa  333 (453)
T 4ffc_A          293 AKGIAG-GMPLSAVTGRA--------ELMDAVYAGGLGGTYGGNPVTCAA  333 (453)
T ss_dssp             CGGGGT-TSSCEEEEEEH--------HHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred             hhhhcC-CcCeEEEEECH--------HHHhhhcccCcCCCCCcCHHHHHH
Confidence            999876 99999998843        46666654432 234566676654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.89  E-value=2.8e-22  Score=185.39  Aligned_cols=224  Identities=11%  Similarity=0.037  Sum_probs=151.6

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+|||..|.+.. +--..++.+.+++.++++....   ....+..+.+.++++++.+..+  .+.+ |++|+|+++
T Consensus        46 ~~g~~~lD~~~~~~~~-~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~--~~~~-v~~~~ggse  118 (452)
T 3n5m_A           46 IQGKRYLDGMSGLWCV-NSGYGRKELAEAAYKQLQTLSY---FPMSQSHEPAIKLAEKLNEWLG--GEYV-IFFSNSGSE  118 (452)
T ss_dssp             TTCCEEEETTHHHHTC-TTCBCCHHHHHHHHHHHTTCCC---CCTTSEEHHHHHHHHHHHHHHT--SCEE-EEEESSHHH
T ss_pred             CCCCEEEECCcchhhc-cCCCCCHHHHHHHHHHHHhcCC---cccccCCHHHHHHHHHHHHhCC--CCce-EEEeCchHH
Confidence            4578899999883221 1122468899999998874321   2223445666666666666443  2344 999999999


Q ss_pred             HHHHHHHHhc-----C---CCCEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCCCCCCC-C-------
Q 022213          119 AVEVILSVLA-----R---PGANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPERNWEV-D-------  169 (301)
Q Consensus       119 al~~~~~~l~-----~---~gd~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-~-------  169 (301)
                      |++.+++.++     .   ++|+|++.+|+|+++.......+..             ...++......+.. |       
T Consensus       119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (452)
T 3n5m_A          119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV  198 (452)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence            9999999987     5   7899999999999875444443321             22333211111111 1       


Q ss_pred             --HHHHHhhcc----cCccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          170 --LDAVEALAD----KNTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       170 --~~~l~~~~~----~~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                        ++.|++.++    ++++++++..+ +| ||.++ +.+++++|.++|++||+++|+||+|..+.+.+.. .....++..
T Consensus       199 ~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~~~~~~~~~  276 (452)
T 3n5m_A          199 ECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKA-FGFMNYDVK  276 (452)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGTTCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCccccc-chhhhcCCC
Confidence              788998886    34555666666 79 99766 8888999999999999999999999987665532 223333323


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHH
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      .+++   +|||.++. | +|+||++++.        ++++.++
T Consensus       277 ~di~---t~sK~l~~-G~~~ig~~~~~~--------~i~~~~~  307 (452)
T 3n5m_A          277 PDII---TMAKGITS-AYLPLSATAVKR--------EIYEAFK  307 (452)
T ss_dssp             CSEE---EECGGGGT-TSSCCEEEEEEH--------HHHGGGC
T ss_pred             CCEE---eecccccC-CCcceEEEEECH--------HHHHHHh
Confidence            3333   78999876 9 9999999843        4666664

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.89  E-value=1.2e-22  Score=186.65  Aligned_cols=240  Identities=14%  Similarity=0.084  Sum_probs=156.0

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      +++.+++|..|.+..  .+. .++.+.+++.++++....  +. ..+..+++.++++.+.+.++  .+.++|++|+|+++
T Consensus        41 ~g~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~e  113 (433)
T 1zod_A           41 DGRAILDFTSGQMSA--VLGHCHPEIVSVIGEYAGKLDH--LF-SEMLSRPVVDLATRLANITP--PGLDRALLLSTGAE  113 (433)
T ss_dssp             TCCEEEETTHHHHTC--TTCBTCHHHHHHHHHHHHHCCC--CC-TTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHH
T ss_pred             CCCEEEEcccchhcc--ccCCCCHHHHHHHHHHHHhCcc--cc-cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHH
Confidence            467788997775421  122 467899999988874321  11 12334556666666655544  35689999999999


Q ss_pred             HHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc------------CceEEEeecCC--CCCCC--------CCHHHHH
Q 022213          119 AVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK------------QVEVRHFDLLP--ERNWE--------VDLDAVE  174 (301)
Q Consensus       119 al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~------------g~~~~~~~~~~--~~~~~--------~~~~~l~  174 (301)
                      |++.+++.+.  ..+|+|++.+|+|+++.......            ...+..++...  ...+.        +|++.|+
T Consensus       114 a~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le  193 (433)
T 1zod_A          114 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF  193 (433)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHH
Confidence            9999998764  24589999999998754332211            01233333311  11121        3588999


Q ss_pred             hhccc---CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          175 ALADK---NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       175 ~~~~~---~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      +.+++   +..++++++| +||||. ..+.+++++|.++|++||+++|+||+|.++.+.+. ...+..++...++   .|
T Consensus       194 ~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~-~~~~~~~~~~~di---~s  269 (433)
T 1zod_A          194 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGVTPDI---LT  269 (433)
T ss_dssp             HHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSE---EE
T ss_pred             HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch-HhHHhhcCCCCCE---EE
Confidence            88863   2344556677 588996 57889999999999999999999999998765443 2222222222233   38


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc---ccCCCccccccc
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS---IYSDIPTFIQVC  299 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~q~~  299 (301)
                      +||.++. |+|+||+++++        ++++.++....   ...+.++++|.+
T Consensus       270 ~sK~~~~-G~~ig~~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~a  313 (433)
T 1zod_A          270 LSKTLGA-GLPLAAIVTSA--------AIEERAHELGYLFYTTHVSDPLPAAV  313 (433)
T ss_dssp             ECHHHHT-TSSCEEEEECH--------HHHHHHHHTTCCCCCTTTTCHHHHHH
T ss_pred             ecccccC-CCCeeEEEEhH--------HHHHhhccCCCCCCCCCCcCHHHHHH
Confidence            9999986 99999999853        47777765221   223456666643

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5.6e-22  Score=185.49  Aligned_cols=204  Identities=14%  Similarity=0.114  Sum_probs=161.3

Q ss_pred             CChHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC-----C
Q 022213           59 RTAVEAEDAIVDAVRSG---KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR-----P  130 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-----~  130 (301)
                      ..++.+.+++.+++...   ....|....|..++++++++++.+.+|...+++++++|+|+++++..+++++++     +
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            44567778777777642   223455555677899999999988888666678999999999999999999865     5


Q ss_pred             C---CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHH
Q 022213          131 G---ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAE  207 (301)
Q Consensus       131 g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~  207 (301)
                      |   |+|+++.++|..+...++..|++++.++++. +++.+|++.|+++++++++++++++|+||||.+.+   +++|.+
T Consensus       155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~  230 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGK  230 (497)
T ss_dssp             CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred             CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence            6   8999999999999999999999999999854 35679999999999988999999999999999998   888899


Q ss_pred             HHHhCCCeEEEccCCcccccC-----CCC-CCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          208 MARKLRVMVVADEVYGHLTFG-----SIP-YTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       208 ~~~~~~~~ii~D~~y~~~~~~-----~~~-~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+++|+++|+|++|..+...     +.. .+++. +...+-.+++.|++|. +.+|.++||+++++
T Consensus       231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~  295 (497)
T 3mc6_A          231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FRVPGVTSISCDTHKY-GFAPKGSSVIMYRN  295 (497)
T ss_dssp             HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TTSTTCCEEEEETTTT-TCCCSSCEEEECSS
T ss_pred             HHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-ccCCCCcEEEECchhh-cCCCCCceeEEecC
Confidence            999999999999999864321     100 10111 1111223788899998 56788999999855

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.88  E-value=8.4e-23  Score=184.22  Aligned_cols=202  Identities=11%  Similarity=0.036  Sum_probs=147.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ++.+.|+.|-      .++++.+.+++.+...    ..|.+.  ....++++++++++....  ++++++|++|+|++++
T Consensus         4 ~~~~~~~p~p------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~g~t~a   71 (385)
T 2bkw_A            4 SVDTLLIPGP------IILSGAVQKALDVPSL----GHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVLAGSGTLG   71 (385)
T ss_dssp             CCCEECSSSS------CCCCHHHHHTTSCCCC----CTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEEESCTTHH
T ss_pred             ccceeecCCC------cCchHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEEcCchHHH
Confidence            4556776663      3445666666544332    122221  134567888888886532  2456899999999999


Q ss_pred             HHHHHHHhc---CCCCEEEEc-CCCCcch-HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCc
Q 022213          120 VEVILSVLA---RPGANVLLP-RPGWPYY-EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPC  193 (301)
Q Consensus       120 l~~~~~~l~---~~gd~Vl~~-~p~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~npt  193 (301)
                      +..+++++.   ++||+|+++ .+.|..+ ...++..|.+++.+++. +.++.+|++.+++.+++ +++++++++|+|||
T Consensus        72 l~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt  150 (385)
T 2bkw_A           72 WDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTST  150 (385)
T ss_dssp             HHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTT
T ss_pred             HHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCc
Confidence            999999998   899999888 5566655 36677889999999872 23456899999999876 78999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHhC--CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeC
Q 022213          194 GNVFTYHHLQEIAEMARKL--RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTND  268 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~--~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~  268 (301)
                      |.+++   +++|+++|+++  |+++|+|++|....    .+..+..+   +..+++.|+||+++ .+|  +||+++++
T Consensus       151 G~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~~~~~---~~d~~~~s~~K~~~~~~G--~G~~~~~~  216 (385)
T 2bkw_A          151 AVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC----EEFEFDEW---GVDFALTASQKAIGAPAG--LSISLCSS  216 (385)
T ss_dssp             TEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT----SCCCTTTT---TCSEEEEESSSTTCCCSC--EEEEEECH
T ss_pred             CeEcC---HHHHHHHHHhhCCCCEEEEECccccCC----cccccccc---CceEEEecCccccccCCc--ceEEEEcH
Confidence            99999   78899999999  99999999997422    11223222   23488999999754 466  59999854

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.88  E-value=8.8e-23  Score=187.67  Aligned_cols=237  Identities=13%  Similarity=0.059  Sum_probs=152.3

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.++|+..|....  .++ .++.+.+++.+++.......|+. ....+|++.+++++    +   +.++|++|+|++
T Consensus        52 ~~g~~ylD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~---~~~~v~~~~sGs  121 (434)
T 3l44_A           52 VDGNKYIDYLAAYGPI--ITGHAHPHITKAITTAAENGVLYGTPT-ALEVKFAKMLKEAM----P---ALDKVRFVNSGT  121 (434)
T ss_dssp             TTCCEEEECCGGGTTC--SSCBTCHHHHHHHHHHHHHCSCCSSCC-HHHHHHHHHHHHHC----T---TCSEEEEESSHH
T ss_pred             CCCCEEEECCCchhcc--ccCCCCHHHHHHHHHHHHhCcCCCCCC-HHHHHHHHHHHHhC----C---CCCEEEEeCchH
Confidence            3578899998885421  133 57889999999887543323433 33456666666664    2   578999999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCc-eEEEeecCCCCCC------------CCCHHHHHhhccc--C
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQV-EVRHFDLLPERNW------------EVDLDAVEALADK--N  180 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~------------~~~~~~l~~~~~~--~  180 (301)
                      ++++.+++.+..  ++++|++.+|+|+++.......+. ...........+.            ..|++.+++++++  .
T Consensus       122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  201 (434)
T 3l44_A          122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH  201 (434)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC
Confidence            999999998865  779999999999876543333221 1111111000110            0178999988863  2


Q ss_pred             ccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..++++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.++ ..+. ...+..++...+   +.+|||.++ +|
T Consensus       202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~-~~~~~~~~~~~d---i~t~sK~~~-~G  275 (434)
T 3l44_A          202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY-GGAQDLLGVTPD---LTALGKVIG-GG  275 (434)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS-SCHHHHHTCCCS---EEEEEGGGG-TT
T ss_pred             CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc-cHHHHHcCCCCC---eeehhhhhc-CC
Confidence            344555666 45556555 8889999999999999999999999987 4432 222222222223   348899987 89


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHHhh----hcccCCCccccccc
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIKDC----LSIYSDIPTFIQVC  299 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~q~~  299 (301)
                      +|+||++++.        ++++.+...    .....+.++++|.+
T Consensus       276 ~~iG~~~~~~--------~i~~~~~~~~~~~~~~t~~~~~~a~aa  312 (434)
T 3l44_A          276 LPIGAYGGKK--------EIMEQVAPLGPAYQAGTMAGNPASMAS  312 (434)
T ss_dssp             SSCEEEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred             cCeeeEEEcH--------HHHHhhccCCCcccCCCCCcCHHHHHH
Confidence            9999998743        466666542    11123455555543

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.88  E-value=8.6e-22  Score=177.08  Aligned_cols=194  Identities=13%  Similarity=0.137  Sum_probs=152.0

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh---cCCCCEEE
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL---ARPGANVL  135 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---~~~gd~Vl  135 (301)
                      ++++.+.+++.+.+...   .|.+.....++|+.+++++.      .  +++++|+|+++|+..+++++   +++||+|+
T Consensus        10 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl   78 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFSADRNEII   78 (375)
T ss_dssp             CCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred             CCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEE
Confidence            34678899999888643   23444467899999999982      2  38999999999999999999   88999999


Q ss_pred             EcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 022213          136 LPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM  215 (301)
Q Consensus       136 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~  215 (301)
                      ++.|+|.++...+...|.+++.++++++.  .+|++.+++.++++++++++++|   ||.+.+   +++|.++|+++|++
T Consensus        79 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~  150 (375)
T 2fnu_A           79 TTPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKHSLS  150 (375)
T ss_dssp             ECSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHHTCE
T ss_pred             ECCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHcCCE
Confidence            99999999999999999999999886532  58999999999888888887776   999998   78889999999999


Q ss_pred             EEEccCCcccccCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          216 VVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       216 ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +|+|++|.......  ...+..+.    .+.+.|+|  |.++. |  +|++++.+.      ++++++++...
T Consensus       151 li~D~a~~~~~~~~--~~~~~~~~----~i~~~s~s~~K~~~~-g--~g~~~~~~~------~~~~~~~~~~~  208 (375)
T 2fnu_A          151 FLSDSSHALGSEYQ--NKKVGGFA----LASVFSFHAIKPITT-A--EGGAVVTND------SELHEKMKLFR  208 (375)
T ss_dssp             EEEECTTCTTCEET--TEETTSSS----SEEEEECCTTSSSCC-S--SCEEEEESC------HHHHHHHHHHT
T ss_pred             EEEECccccCCeEC--CeeccccC----CeEEEeCCCCCCccc-c--CceEEEeCC------HHHHHHHHHHH
Confidence            99999998654321  11122221    27788888  99755 6  788887532      24667666543

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.88  E-value=5.5e-22  Score=177.28  Aligned_cols=209  Identities=11%  Similarity=0.050  Sum_probs=147.9

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      ++++|+-|-      .++|+.+.+++.+.+.+.....+.......++.+.+.+.+.+.++.. ++++|++|+|+++++..
T Consensus         4 ~~~~~~p~p------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~   76 (362)
T 3ffr_A            4 NKIYFTPGP------SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWER   76 (362)
T ss_dssp             CCEEECSSS------CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHH
T ss_pred             cceeccCCC------cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHH
Confidence            456776552      34566788888777765431111111223355555555555555532 56789999999999999


Q ss_pred             HHHHhcCCCCEEEEcCCCCc-chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          123 ILSVLARPGANVLLPRPGWP-YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       123 ~~~~l~~~gd~Vl~~~p~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      +++++.++ +.+++..+.|. .+...++..|.+++.++.+  .++.+|+++++  ++++++++++++|+||||.+++   
T Consensus        77 ~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---  148 (362)
T 3ffr_A           77 IIQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---  148 (362)
T ss_dssp             HHHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---
T ss_pred             HHHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---
Confidence            99999988 55556666665 2345677889999999874  34568999998  6778999999999999999999   


Q ss_pred             HHHHHHHHHhC-CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEEEEeeCCCCcccchhHH
Q 022213          202 LQEIAEMARKL-RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       202 l~~i~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++|+++|++| |+++|+|++|......    ..+..     ..+++.|+||+++ .+|  +|++++++        +++
T Consensus       149 l~~i~~la~~~p~~~li~D~a~~~~~~~----~~~~~-----~d~~~~s~~K~~~~~~G--~g~~~~~~--------~~~  209 (362)
T 3ffr_A          149 VEDINTFRDKNKDALIFVDAVSSLPYPK----FDWTK-----IDSVFFSVQKCFGLPAG--LGVWILND--------RVI  209 (362)
T ss_dssp             HHHHTTSGGGSTTSEEEEECTTTTTSSC----CCTTS-----CSEEEEETTSTTCCCSC--CEEEEEEH--------HHH
T ss_pred             HHHHHHHHHhCCCCEEEEecccccCCcc----cChhH-----CcEEEEecccccCCCCc--eEEEEECH--------HHH
Confidence            88888999999 9999999999864321    11111     2288899999988 677  46676643        466


Q ss_pred             HHHHhh
Q 022213          280 DSIKDC  285 (301)
Q Consensus       280 ~~~~~~  285 (301)
                      ++++..
T Consensus       210 ~~~~~~  215 (362)
T 3ffr_A          210 EKSKAL  215 (362)
T ss_dssp             HHHHHH
T ss_pred             HHhhhc
Confidence            666554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.88  E-value=4.3e-22  Score=179.37  Aligned_cols=206  Identities=17%  Similarity=0.159  Sum_probs=157.6

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEV  122 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~  122 (301)
                      ++++++.+.|      ..++.+.+++.+.+...   .|.+..+..++|+.+++++.        .+++++++|+++|+..
T Consensus         4 ~~~~l~~~~~------~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~   66 (373)
T 3frk_A            4 SFASFKPMHD------EIEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHL   66 (373)
T ss_dssp             CSCCCHHHHH------HHHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHH
T ss_pred             cccCCCcccC------CCCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHH
Confidence            3455555542      23567788888877654   36666678999999999983        2489999999999999


Q ss_pred             HHHHh-cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHH
Q 022213          123 ILSVL-ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       123 ~~~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      ++.++ +++||+|+++.++|.++...++..|.+++++++++ +++.+|++.+++.+++++++++   |+||||...+   
T Consensus        67 ~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---  139 (373)
T 3frk_A           67 ILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---  139 (373)
T ss_dssp             HHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---
T ss_pred             HHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---
Confidence            99999 89999999999999999999999999999998864 3467899999999988777776   7889999988   


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCc--ccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSIS--KRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~S--K~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++|.++|+++|+++|+|++|+... +++..   ...+.    -+.+.|||  |.++.+|. .|++++++       +++
T Consensus       140 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~~----d~~~~S~~~~K~l~~~g~-gg~~~~~~-------~~~  204 (373)
T 3frk_A          140 MDEIKRIAKKYNLKLIEDAAQAHGSLYKGMK---VGSLG----DAAGFSFYPAKNLGSLGD-GGAVVTND-------KDL  204 (373)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCCSSS-CEEEEESC-------HHH
T ss_pred             HHHHHHHHHHcCCEEEEECCcccCCEECCEe---ccccc----cEEEEeCcCCCccCccce-eEEEEeCC-------HHH
Confidence            7888889999999999999998633 22221   11111    17788877  88654353 78888754       246


Q ss_pred             HHHHHhhhc
Q 022213          279 IDSIKDCLS  287 (301)
Q Consensus       279 ~~~~~~~~~  287 (301)
                      .++++....
T Consensus       205 ~~~~~~~~~  213 (373)
T 3frk_A          205 AEKIKALSN  213 (373)
T ss_dssp             HHHHHHHHB
T ss_pred             HHHHHHHHh
Confidence            666665543

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.88  E-value=8.9e-23  Score=185.63  Aligned_cols=212  Identities=16%  Similarity=0.152  Sum_probs=150.5

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCC---CCHH--HHH-----HHHHHHhhhCCCCCCCCCEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNS---GIPP--ARR-----AIADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~-----~ia~~l~~~~~~~~~~~~i~  111 (301)
                      .++|+|..|.+.    +  ++.+.+++.+.+.+.....|+...   |.+.  +++     .+++++    +  .++++|+
T Consensus        23 ~~~i~~~~~~~~----~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~----g--~~~~~i~   90 (407)
T 2dkj_A           23 REGLELIASENF----V--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALF----G--AAWANVQ   90 (407)
T ss_dssp             HTSEECCTTCCC----C--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----T--CSEEECC
T ss_pred             hcceeeccCCCC----C--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHh----C--CCcceEE
Confidence            578999999742    3  688999998887642233465432   4443  344     455555    3  3455566


Q ss_pred             EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch---HHHHHhcCc--eEEEeecCCCCCCCCCHHHHHhhccc-CccEEE
Q 022213          112 VTLGCKQAVEVILSVLARPGANVLLPRPGWPYY---EGIAQRKQV--EVRHFDLLPERNWEVDLDAVEALADK-NTAAMV  185 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~---~~~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~  185 (301)
                      +++| ++++..++++++++||+|+++.|+|..+   ...++..|.  ..+.++++ .+++.+|++.+++.+++ ++++++
T Consensus        91 ~~sG-t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~v~  168 (407)
T 2dkj_A           91 PHSG-SQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVR-PDTELIDLEEVRRLALEHRPKVIV  168 (407)
T ss_dssp             CSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCC-TTTSSCCHHHHHHHHHHHCCSEEE
T ss_pred             ecch-HHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCC-cccCccCHHHHHHHHhhcCCeEEE
Confidence            6666 5699999999999999999999999887   344445555  34444332 23567999999999874 789999


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      +++|+||  ...+   +++|.++|++||+++|+|++|.. +.+.+.....+.     ...++++|+||.  ++|.|+||+
T Consensus       169 ~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~s~sK~--l~g~~~G~~  236 (407)
T 2dkj_A          169 AGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-----YAHVVTSTTHKT--LRGPRGGLI  236 (407)
T ss_dssp             ECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-----TCSEEEEESSGG--GCCCSCEEE
T ss_pred             EeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCccc-----cccEEEEecccc--CCCCCceEE
Confidence            8999998  5666   88999999999999999999997 554443222111     135889999996  468899999


Q ss_pred             EeeCCCCcccchhHHHHHHhhh
Q 022213          265 VTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ++++       ++++++++...
T Consensus       237 ~~~~-------~~~~~~l~~~~  251 (407)
T 2dkj_A          237 LSND-------PELGKRIDKLI  251 (407)
T ss_dssp             EESC-------HHHHHHHHHHH
T ss_pred             EECC-------HHHHHHHHhhh
Confidence            9853       24777776654

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.88  E-value=8.3e-22  Score=179.62  Aligned_cols=195  Identities=18%  Similarity=0.196  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHhc------CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCE
Q 022213           63 EAEDAIVDAVRS------GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        63 ~~~~~~~~~~~~------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~  133 (301)
                      .+.+++.+....      ...+.|+.. |...|++.+|+++.        .+..++   ++|+++|+..++.+++++||+
T Consensus        33 ~vl~a~~~~~~~~~~~~~~~~~~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~~GD~  103 (409)
T 3jzl_A           33 KVLDAFQENKVSDFHFHPSTGYGYDDE-GRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGILRPDDE  103 (409)
T ss_dssp             HHHHHHHHTTCCGGGGCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHCCTTCE
T ss_pred             HHHHHHHHhhhhhhccCCCcCCCCChh-HHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhcCCCCE
Confidence            455666654311      123345553 56789999999882        344555   899999999999999999999


Q ss_pred             EEEcC-CCCcchHH----------HHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC----CCCCcccCCC
Q 022213          134 VLLPR-PGWPYYEG----------IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN----PGNPCGNVFT  198 (301)
Q Consensus       134 Vl~~~-p~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~----p~nptG~~~~  198 (301)
                      |+++. |.|..+..          .++..|+++++++++.  ++.+|++.++++++++++++++++    |+||||.+.+
T Consensus       104 Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~  181 (409)
T 3jzl_A          104 LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK  181 (409)
T ss_dssp             EEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHH
T ss_pred             EEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCcccc
Confidence            99998 99998874          3456789999888754  456999999999998899999999    9999998755


Q ss_pred             HHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccc
Q 022213          199 YHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       199 ~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~  275 (301)
                         +++|+++|++  +|+++++|++|..+.+... +..   ++   ..++++|+||.++.+| .+.||++++        
T Consensus       182 ---l~~I~~la~~~~~~~~livD~a~~~~~~~~~-p~~---~g---~Div~~S~sK~lgg~~~~~GG~v~~~--------  243 (409)
T 3jzl_A          182 ---IKEMIVFVKNINPEVIVFVDNCYGEFVEYQE-PPE---VG---ADIIAGSLIKNPGGGLAKTGGYIAGK--------  243 (409)
T ss_dssp             ---HHHHHHHHHHHCTTCEEEEECTTCTTTSSCC-SGG---GT---CSEEEEETTSGGGTTTCSSCEEEEEC--------
T ss_pred             ---HHHHHHHHHhhCCCCEEEEeCCcccccccCC-ccc---cC---CeEEEECccccCCccCCceEEEEEeC--------
Confidence               8999999999  9999999999998664321 111   11   2389999999988776 446888874        


Q ss_pred             hhHHHHHHhhh
Q 022213          276 SGIIDSIKDCL  286 (301)
Q Consensus       276 ~~~~~~~~~~~  286 (301)
                      ++++++++...
T Consensus       244 ~~li~~l~~~~  254 (409)
T 3jzl_A          244 EALVDLCGYRL  254 (409)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            35888887743

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.88  E-value=1.6e-21  Score=178.25  Aligned_cols=157  Identities=15%  Similarity=0.169  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  161 (301)
                      ..++++.+|+++.        .+++++++|+++|+..++.+++++||+|+++.+.|.+....+    +..|+++.+++. 
T Consensus        84 ~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~-  154 (415)
T 2fq6_A           84 HFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-  154 (415)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT-
T ss_pred             HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC-
Confidence            4679999999882        246778889999999999999999999999999999766443    457899988865 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                            .|++++++++++++++|++++|+||||.+++   +++|+++|++  +|+++|+|++|+...+.    .++. ++
T Consensus       155 ------~d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~----~p~~-~g  220 (415)
T 2fq6_A          155 ------LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF----KALD-FG  220 (415)
T ss_dssp             ------TCGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS----CGGG-GT
T ss_pred             ------CCHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC----Cccc-cC
Confidence                  2789999999888999999999999999999   8899999999  99999999999864322    1221 22


Q ss_pred             CCCCEEEEecCcccCCCCcce-eEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPGWR-FGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~r-vG~~~~~~  268 (301)
                         ..+++.|+||.++.+|.+ +||+++++
T Consensus       221 ---~Div~~S~sK~lg~~g~~~~G~l~~~~  247 (415)
T 2fq6_A          221 ---IDVSIQAATKYLVGHSDAMIGTAVCNA  247 (415)
T ss_dssp             ---CSEEEEETTTTTTCSSSCCCEEEEECT
T ss_pred             ---CeEEEEeCccccCCCCCceEEEEEeCH
Confidence               238999999999998865 58888744

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.88  E-value=1.6e-22  Score=182.74  Aligned_cols=197  Identities=16%  Similarity=0.056  Sum_probs=144.4

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      .++++.+.+++.+.+.    ..|.+  .....++++.+++++    +.. .+++|++|+|+++++..++++++++||+|+
T Consensus        32 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl  102 (393)
T 3kgw_A           32 SNLAPRVLAAGSLRMI----GHMQKEMLQIMEEIKQGIQYVF----QTR-NPLTLVVSGSGHCAMETALFNLLEPGDSFL  102 (393)
T ss_dssp             CCCCHHHHHHTTCCCC----CTTSHHHHHHHHHHHHHHHHHH----TCC-CSEEEEESCCTTTHHHHHHHHHCCTTCEEE
T ss_pred             CCCCHHHHHHhccccc----CcccHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEE
Confidence            4566777776654321    12222  122346667777766    211 233699999999999999999999999999


Q ss_pred             EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      ++.++|.+  +...++..|.+++.++++..  +.+|++.+++.+++ +++++++++|+||||.+++   +++|.++|++|
T Consensus       103 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~  177 (393)
T 3kgw_A          103 TGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY  177 (393)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT
T ss_pred             EEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHc
Confidence            99988863  35677889999999988543  35899999999987 8999999999999999999   88899999999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |+++|+|++|....    ....+..+   +..+++.|+||+++. +.++||+++++        +++++++.
T Consensus       178 ~~~li~De~~~~g~----~~~~~~~~---~~d~~~~s~sK~~~~-~~g~g~~~~~~--------~~~~~~~~  233 (393)
T 3kgw_A          178 QCLLLVDSVASLGG----VPIYMDQQ---GIDIMYSSSQKVLNA-PPGISLISFND--------KAKYKVYS  233 (393)
T ss_dssp             TCEEEEECTTTTTT----SCCCTTTT---TCCEEEEESSSTTCC-CSSCEEEEECH--------HHHHHHHT
T ss_pred             CCEEEEECCccccC----cccchhhc---CCCEEEecCcccccC-CCceeEEEECH--------HHHHHHhc
Confidence            99999999987421    11112122   234888899997632 23489998843        47777754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.88  E-value=6.5e-22  Score=183.38  Aligned_cols=244  Identities=14%  Similarity=0.070  Sum_probs=163.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.++||..|.+..  .+. .++.+.+++.++++.... .|....+..++++++++++.+..+  .+.++|++|+|+
T Consensus        46 d~~g~~ylD~~~~~~~~--~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gg  120 (459)
T 4a6r_A           46 DSEGNKIIDGMAGLWCV--NVGYGRKDFAEAARRQMEELPF-YNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSG  120 (459)
T ss_dssp             ETTCCEEEETTHHHHTC--TTCBCCHHHHHHHHHHHHHCSC-CCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSH
T ss_pred             ECCCCEEEECCCchhcc--cCCCCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCch
Confidence            34578899998883221  122 468899999998875332 344434556788888888877654  456799999999


Q ss_pred             HHHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCC--C-CCCCCC---
Q 022213          117 KQAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLP--E-RNWEVD---  169 (301)
Q Consensus       117 ~~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~--~-~~~~~~---  169 (301)
                      ++|++.+++.+++        ++++|++.+|+|+++.......+.             ....++...  . ..+ .|   
T Consensus       121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~  199 (459)
T 4a6r_A          121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDE  199 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHH
Confidence            9999999999976        579999999999987554443322             223333211  0 111 34   


Q ss_pred             -----HHHHHhhccc---CccEEEEcCCCC-Cccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          170 -----LDAVEALADK---NTAAMVIINPGN-PCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       170 -----~~~l~~~~~~---~~~~v~l~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                           ++.|++.+.+   +..++++++|+| ++|. ..+.+++++|.++|++||+++|+||+|..+.+.+..+ ....++
T Consensus       200 ~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~-~~~~~~  278 (459)
T 4a6r_A          200 FGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQHFG  278 (459)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcC
Confidence                 6788887753   344556666654 4555 5588999999999999999999999999876655322 222333


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHH---hhh-cccCCCccccccc
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK---DCL-SIYSDIPTFIQVC  299 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~q~~  299 (301)
                      ...+++   +|||+++..|+|+||++++.        ++++.+.   ... ....+.++++|.+
T Consensus       279 ~~pdi~---t~sK~l~gg~~~lg~v~~~~--------~i~~~~~~~~~~~~~~t~~~~~~~~aa  331 (459)
T 4a6r_A          279 FQPDLF---TAAKGLSSGYLPIGAVFVGK--------RVAEGLIAGGDFNHGFTYSGHPVCAAV  331 (459)
T ss_dssp             CCCSEE---EECGGGGTTSSCCEEEEECH--------HHHHHHHHHCTTHHHHHHCSCHHHHHH
T ss_pred             CCCCee---ehhhhhcCCCCCccceeeCH--------HHHHHhhcCCCcccCCCCCCCHHHHHH
Confidence            333344   68999776669999999843        5777776   222 1233556666654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.88  E-value=5.1e-21  Score=176.96  Aligned_cols=199  Identities=13%  Similarity=0.029  Sum_probs=154.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC---CCEEEcCCHHHHHHHHHHHhcC-------
Q 022213           60 TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA---DDVYVTLGCKQAVEVILSVLAR-------  129 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~-------  129 (301)
                      .++.+.+++.+++.... .+|....+..++++++.+++.+.+|...+.   ..+++|+|+++++..++.++.+       
T Consensus        54 ~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~  132 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME  132 (452)
T ss_dssp             CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888887775332 346555577788888888888877743221   1499999999999999988864       


Q ss_pred             -CC-----CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHH
Q 022213          130 -PG-----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQ  203 (301)
Q Consensus       130 -~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~  203 (301)
                       +|     ++|++++ +|..+...++..|++++.+++++ +++.+|+++|++.+++++++|++++|+||||.+.+   ++
T Consensus       133 ~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~  207 (452)
T 2dgk_A          133 AAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEF---PQ  207 (452)
T ss_dssp             HTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCC---HH
T ss_pred             hcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HH
Confidence             55     5999999 99999999999999999998854 35789999999999888999999999999999988   88


Q ss_pred             HHHHHHHhC------CCeEEEccCCccccc---CCCCCCCccccCCCCC-EEEEecCcccCCCCcceeEEEEeeCC
Q 022213          204 EIAEMARKL------RVMVVADEVYGHLTF---GSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       204 ~i~~~~~~~------~~~ii~D~~y~~~~~---~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +|+++|+++      ++++++|++|+.+..   .+.....+   . ..+ .++..|++|. ++.|.|+||+++.+.
T Consensus       208 ~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~-~~~~d~~~~~~hK~-~~~~~~~G~~~~~~~  278 (452)
T 2dgk_A          208 PLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF---R-LPRVKSISASGHKF-GLAPLGCGWVIWRDE  278 (452)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST---T-STTEEEEEEETTTT-TCCCSSCEEEEESSG
T ss_pred             HHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc---C-CCCCcEEEECcccc-cCCCCCeEEEEEcCH
Confidence            888888884      999999999998653   22111111   1 112 2567788995 789999999998653

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.88  E-value=1.4e-21  Score=178.73  Aligned_cols=178  Identities=15%  Similarity=0.137  Sum_probs=140.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCCEEEEcC-CCCcchHH--------
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGANVLLPR-PGWPYYEG--------  146 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd~Vl~~~-p~~~~~~~--------  146 (301)
                      .|+. .|...|++.+|+++.        .+..++   ++|+++|+..++.+++++||+|++++ |.|.++..        
T Consensus        69 ~y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~  139 (427)
T 3i16_A           69 GYGD-IGRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENS  139 (427)
T ss_dssp             CTTC-HHHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCC
T ss_pred             CCCH-HHHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccc
Confidence            3444 356789999999982        233455   88899999999999999999999999 99998763        


Q ss_pred             ---HHHhcCceEEEeecCCCCCCCCCHHHHHhhcc--cCccEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCe
Q 022213          147 ---IAQRKQVEVRHFDLLPERNWEVDLDAVEALAD--KNTAAMVIIN----PGNPCGNVFTYHHLQEIAEMARK--LRVM  215 (301)
Q Consensus       147 ---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~----p~nptG~~~~~~~l~~i~~~~~~--~~~~  215 (301)
                         .++..|++++.++++.  ++.+|++.++++++  +++++|++++    |+||||.+.   ++++|+++|++  +|++
T Consensus       140 ~~~~l~~~G~~~~~v~~~~--~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~---dl~~i~~la~~~~~g~~  214 (427)
T 3i16_A          140 NMGSLKEFGINYKQVDLKE--DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIE---DIKSIVDCVKNIRKDII  214 (427)
T ss_dssp             SSCCTGGGTCEEEECCCCT--TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHH---HHHHHHHHHHHHCTTSE
T ss_pred             hHHHHHHcCCEEEEecCcc--CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHH---HHHHHHHHHHHhCCCCE
Confidence               3456789999888754  34689999999998  7889999998    999998774   59999999999  9999


Q ss_pred             EEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          216 VVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       216 ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +++|++|..+.+... +  + .++   ..|+++|+||.++.+| .+.||++++        ++++++++..
T Consensus       215 livD~a~~~~~~~~~-p--~-~~g---aDiv~~S~sK~lgg~g~~~gG~i~~~--------~~li~~l~~~  270 (427)
T 3i16_A          215 CFVDNCYGEFMDTKE-P--T-DVG---ADLIAGSLIKNIGGGIAPTGGYLAGT--------KDCIEKTSYR  270 (427)
T ss_dssp             EEEECTTTTTSSSSC-G--G-GGT---CSEEEEETTSGGGTTTCCSCEEEEEC--------HHHHHHHHHH
T ss_pred             EEEECCCccccccCC-c--c-ccC---CeEEEecCcccCCCCCCceEEEEEEC--------HHHHHHHHHh
Confidence            999999998764321 1  1 111   2389999999988776 678999874        3588888774

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.88  E-value=4.3e-22  Score=183.94  Aligned_cols=226  Identities=16%  Similarity=0.156  Sum_probs=151.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC-CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN-SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      ++..+++++.|.+...-.+. ++.+.+++.++++...   |... .+..++++++++.+.+..+  .+.++|++|+|+++
T Consensus        48 ~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggse  121 (449)
T 3a8u_X           48 KGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSE  121 (449)
T ss_dssp             TCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHH
T ss_pred             CCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHH
Confidence            46778999877532111222 6889999998886432   2221 3445666777777766443  46789999999999


Q ss_pred             HHHHHHHHhcC--------CCCEEEEcCCCCcchH-HHHHhcCc------------eEEEeecCC--CCCC-CCC-----
Q 022213          119 AVEVILSVLAR--------PGANVLLPRPGWPYYE-GIAQRKQV------------EVRHFDLLP--ERNW-EVD-----  169 (301)
Q Consensus       119 al~~~~~~l~~--------~gd~Vl~~~p~~~~~~-~~~~~~g~------------~~~~~~~~~--~~~~-~~~-----  169 (301)
                      |++.+++++..        +||+|++.+|+|+++. ..+...|.            .+..++...  ..++ ++|     
T Consensus       122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~  201 (449)
T 3a8u_X          122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG  201 (449)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence            99999998864        6799999999998753 33443331            234444321  1111 245     


Q ss_pred             ---HHHHHhhccc---CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          170 ---LDAVEALADK---NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       170 ---~~~l~~~~~~---~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                         ++.|++.+++   ...++++++| +|+||. ..+.+++++|.++|++||+++|+||+|..+.+.+. ...+..++..
T Consensus       202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~  280 (449)
T 3a8u_X          202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFGVT  280 (449)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcCCC
Confidence               8999988863   2234556666 467997 55789999999999999999999999987654442 1122223222


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      .+++   |+||.++. | +|+||+++++        ++++.++.
T Consensus       281 ~di~---s~sK~l~~-G~~~~G~~~~~~--------~~~~~l~~  312 (449)
T 3a8u_X          281 PDLM---CIAKQVTN-GAIPMGAVIAST--------EIYQTFMN  312 (449)
T ss_dssp             CSEE---EECGGGGT-TSSCCEEEEEEH--------HHHHHHHT
T ss_pred             CCEE---EEcccccC-CCCceEEEEECH--------HHHHHhhc
Confidence            3333   88999874 7 9999998853        47777765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.87  E-value=2.9e-22  Score=182.83  Aligned_cols=215  Identities=14%  Similarity=0.117  Sum_probs=141.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC------CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA------TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ...|+|..++.      +.++.+.+++.+.+.......|+      ...+..++++.+.+.+.+.++  .++++|++++|
T Consensus        25 ~~~i~l~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG   96 (417)
T 3n0l_A           25 CEGLEMIASEN------FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG   96 (417)
T ss_dssp             HHSEECCTTCC------CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH
T ss_pred             hcCeeeecccC------CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH
Confidence            35688866542      23678889888777432111222      222234555544444444333  45667888777


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCcchHH---HHHhcC--ceEEEeecCCCCCCCCCHHHHHhhcc-cCccEEEEcCC
Q 022213          116 CKQAVEVILSVLARPGANVLLPRPGWPYYEG---IAQRKQ--VEVRHFDLLPERNWEVDLDAVEALAD-KNTAAMVIINP  189 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p  189 (301)
                       ++++..++.+++++||+|+++.|+|.++..   .+...|  ..++.++++  .++.+|++.+++.++ .+++++++++|
T Consensus        97 -t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~  173 (417)
T 3n0l_A           97 -SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGAS  173 (417)
T ss_dssp             -HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCS
T ss_pred             -HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCc
Confidence             799999999999999999999999987543   333333  445555543  566799999999987 58899988888


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|  |...+   +++|.++|++||+++|+|+++. ...+.+..+..+.     ...+++.|+||++  +|.|+||+++++
T Consensus       174 ~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~G~~~~~~  241 (417)
T 3n0l_A          174 AY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-----YAHVVSSTTHKTL--RGPRGGIIMTND  241 (417)
T ss_dssp             SC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-----TCSEEEEESSTTT--CSCSCEEEEESC
T ss_pred             cc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-----cceEEEeeCcccc--CCCCeeEEEECC
Confidence            86  88888   8899999999999999999964 4444433232222     1238899999985  788999999854


Q ss_pred             CCCcccchhHHHHHHhhh
Q 022213          269 PNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~  286 (301)
                             ++++++++...
T Consensus       242 -------~~~~~~~~~~~  252 (417)
T 3n0l_A          242 -------EELAKKINSAI  252 (417)
T ss_dssp             -------HHHHHHHHHHH
T ss_pred             -------HHHHHHHhhhh
Confidence                   24777776654

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.87  E-value=4.8e-22  Score=182.98  Aligned_cols=206  Identities=16%  Similarity=0.144  Sum_probs=134.9

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      .+++.+|||..|.+.  ..++ .++.+.+++.++++...  .|..   .....++++.+++++        ..++|++++
T Consensus        62 ~~G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~--------g~~~v~~~~  129 (433)
T 1z7d_A           62 VNDKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLT--ICSRAFFSVPLGICERYLTNLL--------GYDKVLMMN  129 (433)
T ss_dssp             TTCCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCS--CCCTTSEEHHHHHHHHHHHHHH--------TCSEEEEES
T ss_pred             CCCCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCC--CccCCcCCHHHHHHHHHHHhhc--------CCCeEEEeC
Confidence            346778999887432  1255 77899999999987432  1211   112234555555554        257999999


Q ss_pred             CHHHHHHHHHHHhc---------CCC-CEEEEcCCCCcchHH-HHHhcC------------ceEEEeecCCCCCCCCCHH
Q 022213          115 GCKQAVEVILSVLA---------RPG-ANVLLPRPGWPYYEG-IAQRKQ------------VEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus       115 g~~~al~~~~~~l~---------~~g-d~Vl~~~p~~~~~~~-~~~~~g------------~~~~~~~~~~~~~~~~~~~  171 (301)
                      |+++|++.+++.+.         .+| |+|++++|+|+++.. .+...+            .++..++.       .|++
T Consensus       130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~  202 (433)
T 1z7d_A          130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE  202 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred             CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence            99999999998864         367 999999999987543 222223            23333332       3899


Q ss_pred             HHHhhc-ccCccEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          172 AVEALA-DKNTAAMVIINPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       172 ~l~~~~-~~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      .+++.+ +++++++++...+|++|.+ ++.+.+++|.++|++||+++|+||+|..+.+.+. ...+..++...+++   |
T Consensus       203 ~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~-~~~~~~~~~~~di~---t  278 (433)
T 1z7d_A          203 ALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKPDVI---L  278 (433)
T ss_dssp             HHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE---E
T ss_pred             HHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc-chhhHhcCCCCCEE---E
Confidence            999988 4555555444335678975 6888999999999999999999999987655442 22222222223343   8


Q ss_pred             CcccCCCCc-ceeEEEEeeC
Q 022213          250 ISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       250 ~SK~~~~~G-~rvG~~~~~~  268 (301)
                      +||.++ +| +|+||+++++
T Consensus       279 ~sK~l~-~G~~~~G~v~~~~  297 (433)
T 1z7d_A          279 LGKALS-GGHYPISAVLAND  297 (433)
T ss_dssp             ECGGGG-TTSSCCEEEEECH
T ss_pred             ECcccc-CCCCCeEEEEECH
Confidence            999987 79 9999999843

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.87  E-value=9.4e-22  Score=177.83  Aligned_cols=200  Identities=18%  Similarity=0.191  Sum_probs=153.0

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH-HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCE
Q 022213           56 PCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI-ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGAN  133 (301)
Q Consensus        56 p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~  133 (301)
                      |++++++.+.+++.+.++++.+..|++  ...+|++++ |+++.       ..+++++++|+++|+..++.++ +++||+
T Consensus        10 p~~~~~~~i~~a~~~~~~~~~~~~~~~--~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~~~Gd~   80 (377)
T 3ju7_A           10 ASTVPVIEYLDELKEIDASHIYTNYGP--INQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKRKKGKY   80 (377)
T ss_dssp             CCCCCGGGGHHHHHHHHHHTCCSSSCH--HHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSCTTCCE
T ss_pred             CCCCCcHHHHHHHHHHHHcCCcccCCH--HHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCCCCcCE
Confidence            457888899999999888654322333  468999999 99972       1567999999999999999998 899999


Q ss_pred             EEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccC--ccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          134 VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKN--TAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       134 Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      |+++.|+|..+...+...|.+++++++++ +++.+|++.+++++ +++  +++++   |+||+|...+   +++|.++|+
T Consensus        81 Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~~la~  153 (377)
T 3ju7_A           81 ALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYEELEK  153 (377)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHHHHHh
Confidence            99999999999999999999999999864 46789999999988 555  77665   7889999998   788888899


Q ss_pred             hCCCeEEEccCCcccccCCCCCCCc-cccCCCCCEEEEec--CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          211 KLRVMVVADEVYGHLTFGSIPYTPM-GLFGSIVPVITLGS--ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~~~~~~~-~~~~~~~~vi~~~s--~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       +|+++|+|++|+.......  ..+ ..+.   + +.+.|  .+|.++. | +.|+++.++       +++.++++....
T Consensus       154 -~~~~vi~D~a~a~g~~~~~--~~~g~~~~---d-~~~~S~~~~K~l~~-g-~gG~~~~~~-------~~l~~~~~~~~~  217 (377)
T 3ju7_A          154 -KGVPVVVDAAPGFGLMNGG--MHYGQDFS---G-MIIYSFHATKPFGI-G-EGGLIYSKN-------EEDIQRIKRMGN  217 (377)
T ss_dssp             -TTCCBEEECTTCTTCEETT--EETTTTCS---S-EEEEECBTTSSSCC-B-SCEEEEESC-------HHHHHHHHHHTB
T ss_pred             -cCCEEEEECCCccCCeECC--EeccCCCC---c-EEEEECCCCCcCCC-C-CcEEEEECC-------HHHHHHHHHHHh
Confidence             9999999999986432111  111 1111   1 44555  4698775 5 678887754       357777776654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.87  E-value=5.3e-22  Score=183.55  Aligned_cols=206  Identities=17%  Similarity=0.148  Sum_probs=138.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ++..+|+|+.|.+...-.+ .++.+.+++.++++...  .|   .+..++++++++++.+.++   +.++|++|+|+++|
T Consensus        55 ~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA  125 (453)
T 2cy8_A           55 DGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTET  125 (453)
T ss_dssp             TCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHH
T ss_pred             CCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHH
Confidence            4677899998864322122 67889999999887532  23   2456899999999988654   56899999999999


Q ss_pred             HHHHHHH---hcCCCCEEEEcCCCCcchHHHHHh-----------cCce------EEEeecCCCCCCCCCHHHHHhhccc
Q 022213          120 VEVILSV---LARPGANVLLPRPGWPYYEGIAQR-----------KQVE------VRHFDLLPERNWEVDLDAVEALADK  179 (301)
Q Consensus       120 l~~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~~-----------~g~~------~~~~~~~~~~~~~~~~~~l~~~~~~  179 (301)
                      ++.+++.   +.+ ++.|++.+|+|+++...+..           .|+.      +..++.       .|++.+++.+++
T Consensus       126 ~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~  197 (453)
T 2cy8_A          126 TLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFAN  197 (453)
T ss_dssp             HHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHh
Confidence            9999998   654 46888888999875432221           1221      222221       488999988863


Q ss_pred             --CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC
Q 022213          180 --NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL  255 (301)
Q Consensus       180 --~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~  255 (301)
                        ...++++++| +|+||.+. +.+++++|.++|++||+++|+||+|.++ +.+. ...+..++...+++   |+||.++
T Consensus       198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~di~---s~sK~l~  272 (453)
T 2cy8_A          198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLDVQPDLT---CLAKASA  272 (453)
T ss_dssp             HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHTCCCSEE---EEEGGGG
T ss_pred             cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhCCCCcEE---EEChhhh
Confidence              1234455666 47799765 7999999999999999999999999987 4332 11222222222333   8999987


Q ss_pred             CCcceeEEEEeeC
Q 022213          256 VPGWRFGWLVTND  268 (301)
Q Consensus       256 ~~G~rvG~~~~~~  268 (301)
                      . |+|+||+++++
T Consensus       273 ~-G~~~G~v~~~~  284 (453)
T 2cy8_A          273 G-GLPGGILGGRE  284 (453)
T ss_dssp             T-TSSCEEEEECH
T ss_pred             C-CcceEEEechH
Confidence            5 99999999853

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.87  E-value=1.4e-21  Score=178.80  Aligned_cols=195  Identities=17%  Similarity=0.164  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHhc------CCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE---cCCHHHHHHHHHHHhcCCCC
Q 022213           62 VEAEDAIVDAVRS------GKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV---TLGCKQAVEVILSVLARPGA  132 (301)
Q Consensus        62 ~~~~~~~~~~~~~------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---t~g~~~al~~~~~~l~~~gd  132 (301)
                      +.+.+++.+....      .....|+.. |...|++.+|+++        ..+..++   ++|+++|+..++.++++|||
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~--------g~e~alv~p~~~sGt~A~~~al~all~pGD  117 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIF--------NTESAFVRPHFVNGTHAIGAALFGNLRPND  117 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHH--------TCSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHh--------CCCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence            4566666654221      122345553 6778999999988        2344566   88999999999999999999


Q ss_pred             EEEEcC-CCCcchH-----------HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc--cCccEEEEcC----CCCCcc
Q 022213          133 NVLLPR-PGWPYYE-----------GIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD--KNTAAMVIIN----PGNPCG  194 (301)
Q Consensus       133 ~Vl~~~-p~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~----p~nptG  194 (301)
                      +|++++ |.|.++.           ..++..|++++.++.   +++.+|+++++++++  +++++|++++    |+||||
T Consensus       118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg  194 (427)
T 3hvy_A          118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL  194 (427)
T ss_dssp             EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred             EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence            999999 9998876           334567999998886   345799999999998  7899999998    999998


Q ss_pred             cCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCC
Q 022213          195 NVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNG  271 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~  271 (301)
                      .+.   ++++|+++|++  +|+++++|++|..+.+... +  +. ++   ..|+++|+||+++.+| .+.||++++    
T Consensus       195 ~v~---dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~-p--~~-~g---aDiv~~S~sK~lgg~g~~~GG~i~~~----  260 (427)
T 3hvy_A          195 RIA---EIAEIIKSIREVNENVIVFVDNCYGEFVEEKE-P--TD-VG---ADIIAGSLIKNIGGGIATTGGYIAGK----  260 (427)
T ss_dssp             CHH---HHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC-G--GG-GT---CSEEEEETTSGGGTTTCCSCEEEEEC----
T ss_pred             cHH---HHHHHHHHHHHhCCCCEEEEECCccccccCCC-C--cc-cC---CeEEEECCcccccccccceEEEEEEC----
Confidence            765   59999999999  8999999999988764321 1  11 11   2389999999987766 566888873    


Q ss_pred             cccchhHHHHHHhhh
Q 022213          272 IFQKSGIIDSIKDCL  286 (301)
Q Consensus       272 ~~~~~~~~~~~~~~~  286 (301)
                          ++++++++...
T Consensus       261 ----~~li~~l~~~~  271 (427)
T 3hvy_A          261 ----EEYVTQATFRV  271 (427)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHh
Confidence                35888887753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.87  E-value=3.8e-22  Score=184.59  Aligned_cols=242  Identities=16%  Similarity=0.055  Sum_probs=160.1

Q ss_pred             CCCCeeeccCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCF-RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      +++.+|||..|.+..  .+ ..++.+.+++.++++..  ..|....+..+.+.++++++.+..+. ...++|++|+|+++
T Consensus        59 ~g~~ylD~~~~~~~~--~lGh~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGse  133 (451)
T 3oks_A           59 DGNRLIDLGSGIAVT--TVGNSAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSALFNSGSE  133 (451)
T ss_dssp             TSCEEEESSHHHHTC--TTCTTCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEEESSHHH
T ss_pred             CCCEEEEcCCCcccc--ccCCCCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEEeCcHHH
Confidence            467788888773321  12 24788999999998743  34555456678888888888776542 13578999999999


Q ss_pred             HHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCc--------------eEEEeecCCC--C---C---CC---CCHH
Q 022213          119 AVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQV--------------EVRHFDLLPE--R---N---WE---VDLD  171 (301)
Q Consensus       119 al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~--------------~~~~~~~~~~--~---~---~~---~~~~  171 (301)
                      |++.+++.+..  .+++|++.+++|+++.......+.              .+..++....  .   +   ..   .+++
T Consensus       134 A~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  213 (451)
T 3oks_A          134 AVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAK  213 (451)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHH
Confidence            99999988764  458999999999977544433321              3444444210  0   0   00   1233


Q ss_pred             HHHhhc----ccCccEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEE
Q 022213          172 AVEALA----DKNTAAMVIINPGNPCG--NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVI  245 (301)
Q Consensus       172 ~l~~~~----~~~~~~v~l~~p~nptG--~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi  245 (301)
                      .+++.+    ..+..+++++.|.|++|  ...+.+.+++|.++|++||+++|+||+|..+.+.+. ...+..++...+++
T Consensus       214 ~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pdi~  292 (451)
T 3oks_A          214 RAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEGIDPDLI  292 (451)
T ss_dssp             HHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE
T ss_pred             HHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc-chhhhhcCCCCCee
Confidence            333333    33456777888877666  344677899999999999999999999998766553 22333333333344


Q ss_pred             EEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          246 TLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       246 ~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                         ||||.++. |+|+||++++.        ++++.++.... ...+.++++|.+
T Consensus       293 ---t~sK~l~~-G~~iG~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa  335 (451)
T 3oks_A          293 ---VTAKGIAG-GLPLSAVTGRA--------EIMDSPHVSGLGGTYGGNPIACAA  335 (451)
T ss_dssp             ---EECGGGGT-TSSCEEEEEEH--------HHHTCSCTTSBCCSSSSCHHHHHH
T ss_pred             ---eehhhhhC-CcceEEEEECH--------HHHhhhcCCCcCCCCCCCHHHHHH
Confidence               88999876 99999998843        46666654332 234566676654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.87  E-value=2.2e-21  Score=178.88  Aligned_cols=205  Identities=14%  Similarity=0.105  Sum_probs=144.7

Q ss_pred             CCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCC--CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFN--CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      +++.+|||..|.+..  .++ .++.+.+++.++++.....  .|. .....++++.+++++        ..++|++++|+
T Consensus        74 ~g~~ylD~~sg~~~~--~lgh~~p~v~~Ai~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~--------g~~~v~~~~sG  142 (439)
T 2oat_A           74 EGRKYFDFLSSYSAV--NQGHCHPKIVNALKSQVDKLTLTSRAFY-NNVLGEYEEYITKLF--------NYHKVLPMNTG  142 (439)
T ss_dssp             TCCEEEESSGGGGTT--TTCBTCHHHHHHHHHHHTTCSCCCTTSE-ESSHHHHHHHHHHHH--------TCSEEEEESSH
T ss_pred             CCCEEEEccCCcccc--cCCCCCHHHHHHHHHHHHhcCcccCccC-CHHHHHHHHHHHHhc--------CCCEEEEeCCH
Confidence            466789998875431  255 7789999999998753211  122 223466777777776        25789999999


Q ss_pred             HHHHHHHHHHhc---------CCC-CEEEEcCCCCcchH-HHHHhcC------------ceEEEeecCCCCCCCCCHHHH
Q 022213          117 KQAVEVILSVLA---------RPG-ANVLLPRPGWPYYE-GIAQRKQ------------VEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus       117 ~~al~~~~~~l~---------~~g-d~Vl~~~p~~~~~~-~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++|++.+++.+.         .+| |+|++.+|+|+++. ..+...+            .++..++.       .|++.+
T Consensus       143 seA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~l  215 (439)
T 2oat_A          143 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPAL  215 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHH
Confidence            999999999875         357 89999999998753 3333333            34444443       389999


Q ss_pred             Hhhcc-cCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          174 EALAD-KNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       174 ~~~~~-~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      ++.++ ++++++ +++| +|++|. ..+.+.+++|.++|++||+++|+||+|.++.+.+.. ..+..++...+++   |+
T Consensus       216 e~~l~~~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~-~~~~~~~~~~Di~---t~  290 (439)
T 2oat_A          216 ERALQDPNVAAF-MVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW-LAVDYENVRPDIV---LL  290 (439)
T ss_dssp             HHHTTSTTEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE---EE
T ss_pred             HHHhCCCCEEEE-EEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcc-hhHHHhCCCCcEE---Ee
Confidence            99884 445444 4555 567896 568889999999999999999999999876554432 2222233223343   89


Q ss_pred             cccCCCCc-ceeEEEEeeC
Q 022213          251 SKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       251 SK~~~~~G-~rvG~~~~~~  268 (301)
                      ||.++ +| +|+||+++++
T Consensus       291 sK~l~-~G~~~~G~v~~~~  308 (439)
T 2oat_A          291 GKALS-GGLYPVSAVLCDD  308 (439)
T ss_dssp             CGGGG-TTSSCCEEEEECH
T ss_pred             ccccc-CCCCCeEEEEECH
Confidence            99987 58 9999999853

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.87  E-value=2e-21  Score=180.16  Aligned_cols=245  Identities=16%  Similarity=0.073  Sum_probs=160.5

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+|||..|.... +.-..++.+.+++.++++.... .|....+..++++++++++.+..+  .+.++|++|+|+++
T Consensus        48 ~~G~~~lD~~~~~~~~-~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGse  123 (460)
T 3gju_A           48 NNGRKSIDAFAGLYCV-NVGYGRQKIADAIATQAKNLAY-YHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSD  123 (460)
T ss_dssp             TTCCEEEETTHHHHTC-TTCBCCHHHHHHHHHHHHHHSC-CCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred             CCCCEEEECCcchhhc-cCCCCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHH
Confidence            4578899999883211 1122468899999888874322 344444556778888888877543  46679999999999


Q ss_pred             HHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCC---CCCCCC-----
Q 022213          119 AVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPE---RNWEVD-----  169 (301)
Q Consensus       119 al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~---~~~~~~-----  169 (301)
                      |++.+++.+..        ++++|++.+++|+++.......+.             .+..++....   ++++.+     
T Consensus       124 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  203 (460)
T 3gju_A          124 ANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFS  203 (460)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHH
Confidence            99999999874        469999999999987544433321             2344442110   111233     


Q ss_pred             ---HHHHHhhccc---CccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          170 ---LDAVEALADK---NTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       170 ---~~~l~~~~~~---~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                         ++.|++.+.+   +..++++++| +|++|. +.+.+.+++|.++|++||+++|+||+|..+.+.+..+ ....++..
T Consensus       204 ~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~  282 (460)
T 3gju_A          204 QHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMF-GSDHYGIK  282 (460)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCC
Confidence               5788887752   2334444555 666776 7788899999999999999999999999876554322 22233333


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh-------h-cccCCCccccccc
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-------L-SIYSDIPTFIQVC  299 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~q~~  299 (301)
                      .+++   +|||+++..++|+||++++.        ++++.+...       . ....+.++++|.+
T Consensus       283 pdi~---t~sK~l~gG~~~lg~v~~~~--------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa  337 (460)
T 3gju_A          283 PDLI---TIAKGLTSAYAPLSGVIVAD--------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAA  337 (460)
T ss_dssp             CSEE---EECGGGTTTSSCCEEEEEEH--------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHH
T ss_pred             CCee---eeehhhcCCCCCeEEEEECH--------HHHHHHhcccccccccccCCCCCCCHHHHHH
Confidence            3333   78999754338999999854        577777531       1 1233556666654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.87  E-value=2.2e-21  Score=176.95  Aligned_cols=196  Identities=14%  Similarity=0.089  Sum_probs=142.0

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--------NSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      ++++.|+.+.+.     +.|+.+.+++.+++... ...+..        .....++++.+++++      +.++++|++|
T Consensus        27 ~~~~yld~~~~~-----~~~~~v~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~   94 (416)
T 1qz9_A           27 EGVIYLDGNSLG-----ARPVAALARAQAVIAEE-WGNGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVT   94 (416)
T ss_dssp             TTCEECCTTTSC-----CCBTTHHHHHHHHHHTC-CCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEEC
T ss_pred             CCeEeecCCCcC-----CCcHHHHHHHHHHHHHH-HhccCccccchhhHHHHHHHHHHHHHHHc------CCCcccEEEe
Confidence            567888888643     45667889998888642 111110        122356666666665      3467899999


Q ss_pred             CCHHHHHHHHHHHhc------CCCCEEE-EcCCCCcchHHH----HHhc--CceEEEeecCCCCCCCCCHHHHHhhcccC
Q 022213          114 LGCKQAVEVILSVLA------RPGANVL-LPRPGWPYYEGI----AQRK--QVEVRHFDLLPERNWEVDLDAVEALADKN  180 (301)
Q Consensus       114 ~g~~~al~~~~~~l~------~~gd~Vl-~~~p~~~~~~~~----~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (301)
                      +|+++++..++.+++      ++||+|+ ++.++|..+...    .+..  |.+++.+++         ++++++.++++
T Consensus        95 ~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~  165 (416)
T 1qz9_A           95 DTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQD  165 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTT
T ss_pred             CChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCC
Confidence            999999999998886      8999754 555677754332    2233  888888764         68899888888


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      ++++++++|+||||.+++   +++|.++|+++|+++|+|++|...    .....+..++   ..+++.|+||.+ .+|.|
T Consensus       166 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g----~~~~~~~~~~---~d~~~~s~~K~l-~~g~~  234 (416)
T 1qz9_A          166 TAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAG----AVPVDLHQAG---ADYAIGCTYKYL-NGGPG  234 (416)
T ss_dssp             EEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT----TSCCCHHHHT---CSEEEECSSSTT-CCCTT
T ss_pred             ceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccccc----CcCCChhhcC---CCEEEecCcccC-CCCCC
Confidence            899999999999999999   888999999999999999999842    1222232222   238889999995 46777


Q ss_pred             e-EEEEeeCC
Q 022213          261 F-GWLVTNDP  269 (301)
Q Consensus       261 v-G~~~~~~~  269 (301)
                      + ||+++++.
T Consensus       235 ~~g~l~~~~~  244 (416)
T 1qz9_A          235 SQAFVWVSPQ  244 (416)
T ss_dssp             CCCEEEECTT
T ss_pred             CeEEEEECHH
Confidence            7 99998653

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.87  E-value=1.8e-21  Score=178.62  Aligned_cols=157  Identities=19%  Similarity=0.154  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeec
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDL  160 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~  160 (301)
                      ...+|++.+++++.        .+..++++++++|+..++++++++||+|+++.|.|.++..    .+...|+++++++.
T Consensus        83 ~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~  154 (430)
T 3ri6_A           83 TVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDV  154 (430)
T ss_dssp             HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence            45788888888872        2346777777899999999999999999999999998766    66788999999876


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                      .       |++.+++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.    .+. .++ 
T Consensus       155 ~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~----~~~-~~g-  218 (430)
T 3ri6_A          155 M-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL----EAK-RLG-  218 (430)
T ss_dssp             T-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC----CGG-GGT-
T ss_pred             C-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----ChH-HcC-
Confidence            2       899999999989999999999999999998   888899999999999999999864431    111 121 


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEee
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                        ..+++.|+||.++.+|..+|.+++.
T Consensus       219 --~div~~S~sK~l~g~g~~~gG~vv~  243 (430)
T 3ri6_A          219 --VDIEVLSSTKFISGGGTSVGGVLID  243 (430)
T ss_dssp             --CSEEEEECCCEEETTEEECCEEEEE
T ss_pred             --CEEEEECCcccccCCCCceEEEEEE
Confidence              2389999999999888777777763

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.87  E-value=4.9e-22  Score=184.26  Aligned_cols=211  Identities=18%  Similarity=0.186  Sum_probs=146.7

Q ss_pred             CCCeeeccCCCC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           41 PRPVVPLGYGDP--TAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        41 ~~~~i~l~~g~p--~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      +..+++|..|++  +..+..++ +.+.+++.+++..+. ..|++..+..+||+++++++.        .+++++|+|+++
T Consensus        31 g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~  100 (467)
T 2oqx_A           31 GMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRG  100 (467)
T ss_dssp             TSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CC
T ss_pred             CCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHH
Confidence            556677777654  11122333 566777777775433 368777788899999999982        368999999999


Q ss_pred             HHHHHHHHhcCC-----C----CEEEEcCCCCcchHHHHHhcCceEEEeecC----CC----CCCCCCHHHHHhhccc--
Q 022213          119 AVEVILSVLARP-----G----ANVLLPRPGWPYYEGIAQRKQVEVRHFDLL----PE----RNWEVDLDAVEALADK--  179 (301)
Q Consensus       119 al~~~~~~l~~~-----g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~----~~----~~~~~~~~~l~~~~~~--  179 (301)
                      |+..++++++++     |    |+|++..+.|..+.......+..+......    ..    .++.+|++.|++.+++  
T Consensus       101 A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~  180 (467)
T 2oqx_A          101 AEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG  180 (467)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC
Confidence            999999999888     8    998877444444555555566665543211    11    2345899999999873  


Q ss_pred             --CccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCcc----------cccCCCCCCCccccC----CCC
Q 022213          180 --NTAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGH----------LTFGSIPYTPMGLFG----SIV  242 (301)
Q Consensus       180 --~~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~----------~~~~~~~~~~~~~~~----~~~  242 (301)
                        +++++++++|+||+ |.+++.+++++|+++|++||+++|+|+++..          ..+.+..   ...+.    ...
T Consensus       181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~---~~~~~~~~~~~~  257 (467)
T 2oqx_A          181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT---IEQITRETYKYA  257 (467)
T ss_dssp             GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSC---HHHHHHHHGGGC
T ss_pred             CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCcc---HHHHhhhhhccC
Confidence              68899999999998 8999999999999999999999999966543          1232221   21211    111


Q ss_pred             CEEEEecCcccCCCC-cceeEEEEeeC
Q 022213          243 PVITLGSISKRWLVP-GWRFGWLVTND  268 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~-G~rvG~~~~~~  268 (301)
                      + +++.|+||.+++| |   ||+++++
T Consensus       258 d-~~~~s~sK~~g~~~G---g~~~~~~  280 (467)
T 2oqx_A          258 D-MLAMSAKKDAMVPMG---GLLCMKD  280 (467)
T ss_dssp             S-EEEEESSSTTCCSSC---EEEEECS
T ss_pred             C-eEEEecccccCCCCc---eEEEecC
Confidence            2 4578999998877 5   7777643

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.87  E-value=6.5e-21  Score=174.99  Aligned_cols=180  Identities=19%  Similarity=0.203  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC-CCCcchHHHH----------HhcCceEEE
Q 022213           89 ARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR-PGWPYYEGIA----------QRKQVEVRH  157 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~-p~~~~~~~~~----------~~~g~~~~~  157 (301)
                      .++++.+.+.+.++......+++++ ++++|+..++.+++++||+|+++. |.|..+...+          +..|.+++.
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~  144 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA  144 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred             hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence            3555555555544433222233355 678999999999999999999998 9999887544          457899999


Q ss_pred             eecCCCCCCCCCHHHHHhhcccCccEEEEc-CCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCC
Q 022213          158 FDLLPERNWEVDLDAVEALADKNTAAMVII-NPGNPCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTP  234 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~  234 (301)
                      ++++.  ++.+|++.+++++++++++|+++ +|+||+|.+.+.+++++|+++|++  +|+++|+|++|..+.+... +..
T Consensus       145 v~~~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~-~~~  221 (431)
T 3ht4_A          145 VPLTE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE-PCH  221 (431)
T ss_dssp             CCBCT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC-GGG
T ss_pred             eCCCC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC-ccc
Confidence            98754  36799999999999889999998 599999999999999999999999  9999999999999876432 111


Q ss_pred             ccccCCCCCEEEEecCcccCCC-CcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          235 MGLFGSIVPVITLGSISKRWLV-PGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       235 ~~~~~~~~~vi~~~s~SK~~~~-~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                         +..   .++++|+||+++. .+...||++++        ++++++++...
T Consensus       222 ---~g~---Di~~~S~sK~lgg~~~~~GG~v~~~--------~~li~~l~~~~  260 (431)
T 3ht4_A          222 ---VGA---DLMAGSLIKNPGGGIVKTGGYIVGK--------EQYVEACAYRL  260 (431)
T ss_dssp             ---TTC---SEEEEETTSGGGTTTCSSCEEEEEC--------HHHHHHHHHHH
T ss_pred             ---cCC---eEEEcCccccCCCCCCCceEEEEec--------HHHHHHHHHHh
Confidence               121   2899999999553 22333999974        25788887643

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.86  E-value=1.4e-21  Score=180.45  Aligned_cols=226  Identities=14%  Similarity=0.056  Sum_probs=144.7

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+|||..|.+...-. ..++.+.+++.++++..  ..|....+..+.+.++++++.+..+  .+.++|++|+|+++
T Consensus        41 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse  115 (448)
T 3dod_A           41 INGKEYYDGFSSVWLNVHG-HRKKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAE  115 (448)
T ss_dssp             TTSCEEEETTHHHHTCSSC-BSCHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHH
T ss_pred             CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHH
Confidence            4578899998874321111 24688999999988743  2333334556788888888877654  34579999999999


Q ss_pred             HHHHHHHHhcC----CC----CEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCCCCC---------
Q 022213          119 AVEVILSVLAR----PG----ANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERNWEV---------  168 (301)
Q Consensus       119 al~~~~~~l~~----~g----d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~---------  168 (301)
                      |++.+++.+..    +|    |+|++.+|+|+++.......+.             ....++.  ...+..         
T Consensus       116 A~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  193 (448)
T 3dod_A          116 AMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDECR  193 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhhh
Confidence            99999999875    44    9999999999876543333221             1222222  111111         


Q ss_pred             --CHHHHHhhcc---cCccEEEEcCCC-CCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          169 --DLDAVEALAD---KNTAAMVIINPG-NPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       169 --~~~~l~~~~~---~~~~~v~l~~p~-nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                        |++.|++.++   ++++++++..++ |++| .+.+.+.+++|.++|++||+++|+||+|..+.+.+..+ ....++-.
T Consensus       194 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a~~~~~~~  272 (448)
T 3dod_A          194 DQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQ  272 (448)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh-hhhhcCCC
Confidence              3788888876   233444444445 7777 45677889999999999999999999999876655432 22333323


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      .+++   +|||.++. | +|+||++++.        ++++.++.
T Consensus       273 ~di~---t~sK~l~~-G~~~ig~v~~~~--------~~~~~~~~  304 (448)
T 3dod_A          273 PDLM---AAGKGITG-GYLPIAVTFATE--------DIYKAFYD  304 (448)
T ss_dssp             CSEE---EECGGGGT-TSSCCEEEEEEH--------HHHHTTCS
T ss_pred             CCEE---EecccccC-CcCceEEEEECH--------HHHHHhhh
Confidence            3333   78999865 8 5999999853        47777765

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.86  E-value=1.2e-20  Score=173.74  Aligned_cols=167  Identities=13%  Similarity=0.145  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----AQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  161 (301)
                      ..++|+.+++++.      .+ +.++++ ++++++..++++++++||+|+++.+.|.++...    ++..|+++++++. 
T Consensus       116 ~~~l~~~lA~l~g------~~-~~v~~~-sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-  186 (445)
T 1qgn_A          116 TVVLEEKISALEG------AE-STLLMA-SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP-  186 (445)
T ss_dssp             HHHHHHHHHHHHT------CS-EEEEES-CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-
T ss_pred             HHHHHHHHHHHhC------CC-cEEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC-
Confidence            4588999999872      22 445554 555999999999999999999999999986653    4567999998875 


Q ss_pred             CCCCCCCCHHHHHhhcccCc-cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          162 PERNWEVDLDAVEALADKNT-AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~-~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                            .|++.+++.+++++ ++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    .++ .++ 
T Consensus       187 ------~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~----~~~-~~g-  251 (445)
T 1qgn_A          187 ------ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ----KAL-ALG-  251 (445)
T ss_dssp             ------SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CTT-TTT-
T ss_pred             ------CCHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Ccc-ccC-
Confidence                  28999999998888 99999999999999999   889999999999999999999864322    111 122 


Q ss_pred             CCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          241 IVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                        ..++++|+||.++.+| .++||+++++        +++++++...
T Consensus       252 --~Div~~S~sK~~gg~gd~~~G~l~~~~--------~l~~~l~~~~  288 (445)
T 1qgn_A          252 --ADLVLHSATKFLGGHNDVLAGCISGPL--------KLVSEIRNLH  288 (445)
T ss_dssp             --CSEEEECTTTTTTCSSSCCCEEEEECH--------HHHHHHHHHH
T ss_pred             --CEEEEECCcccccccccceEEEEEECH--------HHHHHHHHHH
Confidence              2389999999988665 5799999843        4667666544

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.86  E-value=4.7e-22  Score=177.98  Aligned_cols=213  Identities=16%  Similarity=0.116  Sum_probs=149.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ....+.++.|..    .+++++.+.+++.+.+.   ...|++..+..+|++++++++.      .  +..++++|+++++
T Consensus        12 ~~~~~~~~~~~~----~~g~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~   76 (359)
T 3pj0_A           12 KTPYKLGGNGPR----NVGVLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQ   76 (359)
T ss_dssp             TCSEESSSSSCC----BHHHHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHH
T ss_pred             hcchhhcCCCcc----ccCCCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHH
Confidence            345555655542    24566777777766432   2357766678899999999982      2  2335568889999


Q ss_pred             HHHHHHhcCCCCE--EEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc-c
Q 022213          121 EVILSVLARPGAN--VLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC-G  194 (301)
Q Consensus       121 ~~~~~~l~~~gd~--Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt-G  194 (301)
                      ..++++++++||+  |+++.++|....   ......|.+++.++.   +++.+|++++++. .++++++++++|+||+ |
T Consensus        77 ~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G  152 (359)
T 3pj0_A           77 QIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-REPVSSVLIELPQREIGG  152 (359)
T ss_dssp             HHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTS
T ss_pred             HHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-cCCceEEEEEecccCCCc
Confidence            9999999988886  555555544321   222456889888875   3457999999998 6789999999999998 7


Q ss_pred             cCCCHHHHHHHHHHHHhCCCeEEEccCCccccc--CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCc
Q 022213          195 NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF--GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI  272 (301)
Q Consensus       195 ~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~--~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~  272 (301)
                      .+++.+++++|+++|++||+++|+|++|.....  .+.....+.   ...+ +++.|+||+++.++ + ||++.+     
T Consensus       153 ~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d-~~~~s~sK~~~~~~-g-g~~~~~-----  221 (359)
T 3pj0_A          153 QLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC---ALFD-SVYVSFYKGIGGIA-G-AILAGN-----  221 (359)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCS-EEEEESSSTTCCSS-C-EEEEEC-----
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh---ccCC-EEEEeccccCCCcc-e-EEEECC-----
Confidence            999999999999999999999999999875432  111111111   1122 45569999987763 2 677653     


Q ss_pred             ccchhHHHHHHhhh
Q 022213          273 FQKSGIIDSIKDCL  286 (301)
Q Consensus       273 ~~~~~~~~~~~~~~  286 (301)
                         ++++++++...
T Consensus       222 ---~~l~~~~~~~~  232 (359)
T 3pj0_A          222 ---DDFVQEAKIWK  232 (359)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHH
Confidence               35777777643

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.86  E-value=6.5e-21  Score=177.37  Aligned_cols=204  Identities=19%  Similarity=0.206  Sum_probs=151.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .++.|+ |...     ...+.+.+++.+.+.  .++.|.+   .+|..++++++++++.+..|.+  . .+++++|++++
T Consensus        67 ~~~~lg-~~~~-----~~~p~v~~~~~~~~~--~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~-~~~~~~ggt~a  135 (474)
T 1wyu_B           67 TFYPLG-SCTM-----KYNPKLHEEAARLFA--DLHPYQDPRTAQGALRLMWELGEYLKALTGMD--A-ITLEPAAGAHG  135 (474)
T ss_dssp             SCCCBT-TTCC-----CCCCHHHHHHHHTTS--SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHH
T ss_pred             Cccccc-cccc-----cCCHHHHHHHHHHHH--hcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--c-eeecChHHHHH
Confidence            578887 5421     222344555544321  2233443   4566788888888887766643  2 36788999999


Q ss_pred             HHHHHHHh----cCCCC-----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          120 VEVILSVL----ARPGA-----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       120 l~~~~~~l----~~~gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      +..++.++    .++||     +|+++.|+|..+...++..|.+++.++++.  ++.+|+++|++.++++++++++++| 
T Consensus       136 ~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~~t~~v~~~~p-  212 (474)
T 1wyu_B          136 ELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGPHVAALMLTNP-  212 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCSTTEEEEEECSS-
T ss_pred             HHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCCCceEEEEECC-
Confidence            98866655    35888     999999999999999999999999998753  4679999999999888899999998 


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-c---ceeEEEEe
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-G---WRFGWLVT  266 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G---~rvG~~~~  266 (301)
                      ||||.+.  +.+++|+++|+++|+++|+|++|....++.   .....++   ..+++.|+||+|++| |   .|+||+++
T Consensus       213 n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~---~~~~~~g---~di~~~s~~K~~~~p~g~gG~~~G~~~~  284 (474)
T 1wyu_B          213 NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGW---ARPGDMG---FDVVHLNLHKTFTVPHGGGGPGSGPVGV  284 (474)
T ss_dssp             CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT---CCHHHHT---CSEEECCTTTTTCCCCTTSCCCCCCEEE
T ss_pred             CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccC---CCcccCC---CcEEEEeCccccccCCCCCCCCeEEEEE
Confidence            6899883  238999999999999999999998766431   1222222   348888999999877 4   59999998


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      ++
T Consensus       285 ~~  286 (474)
T 1wyu_B          285 KA  286 (474)
T ss_dssp             CG
T ss_pred             cH
Confidence            65

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.86  E-value=3e-21  Score=176.94  Aligned_cols=214  Identities=14%  Similarity=0.136  Sum_probs=146.5

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .++..+|+|..|.+...-.+ .++.+.+++.++++...  .|+   +..++++++++.+.+.++   +.++|++++|+++
T Consensus        49 ~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~e  119 (424)
T 2e7u_A           49 ADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLERGL--TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTE  119 (424)
T ss_dssp             TTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCS--CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHH
T ss_pred             CCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCC--CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHH
Confidence            35778999998854321122 57889999999987532  232   234666777777766543   5689999999999


Q ss_pred             HHHHHHHH---hcCCCCEEEEcCCCCcchHHHHH-h-------------cCc------eEEEeecCCCCCCCCCHHHHHh
Q 022213          119 AVEVILSV---LARPGANVLLPRPGWPYYEGIAQ-R-------------KQV------EVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       119 al~~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~-~-------------~g~------~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      |++.+++.   +. +++.|++.+|+|+++...+. .             .|+      .+..++.       .|++.|++
T Consensus       120 a~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~  191 (424)
T 2e7u_A          120 ATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLRE  191 (424)
T ss_dssp             HHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHH
Confidence            99999986   44 45889999999987543221 1             121      2333332       47899998


Q ss_pred             hccc--CccEEEEcCCCCC-cccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          176 LADK--NTAAMVIINPGNP-CGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       176 ~~~~--~~~~v~l~~p~np-tG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++  +..++++++|+|+ ||.+. +.+++++|.++ ++||+++|+||+|.++ ..+.. .....++...+++   |||
T Consensus       192 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~di~---s~s  265 (424)
T 2e7u_A          192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG-GATELLGLKPDLV---TLG  265 (424)
T ss_dssp             HHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT-HHHHHHTCCCSEE---EEC
T ss_pred             HHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh-HHHHHhCCCcchh---hhh
Confidence            8863  2345667788665 89765 78999999999 9999999999999987 33321 1122222223333   999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |.++ +|+|+||+++++        ++++.++.
T Consensus       266 K~l~-~G~~~G~~~~~~--------~~~~~~~~  289 (424)
T 2e7u_A          266 KILG-GGLPAAAYAGRR--------EIMEKVAP  289 (424)
T ss_dssp             GGGG-TTSSCEEEEECH--------HHHTTBTT
T ss_pred             hhhh-CCcceEEEEEcH--------HHHhhhcc
Confidence            9988 499999999843        46666554

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.86  E-value=8.1e-22  Score=181.08  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=152.1

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.++||..|....  .++ .++.+.+++.+++.......|+. ....+|++.+++++    +   ..++|++|+|++
T Consensus        50 ~~g~~ylD~~~~~~~~--~lG~~~p~v~~A~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~---~~~~v~~~~~Gs  119 (429)
T 3k28_A           50 IDGNEYIDYVLSWGPL--IHGHANDRVVEALKAVAERGTSFGAPT-EIENKLAKLVIERV----P---SIEIVRMVNSGT  119 (429)
T ss_dssp             TTCCEEEESCGGGTTC--TTCBSCHHHHHHHHHHHHHCSCCSSCC-HHHHHHHHHHHHHS----T---TCSEEEEESSHH
T ss_pred             CCCCEEEECCCChhhc--ccCCCCHHHHHHHHHHHhhCcCcCCCC-HHHHHHHHHHHHhC----C---CCCEEEEeCChH
Confidence            4578899999885421  133 57899999999887644323333 34567777777765    2   468999999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHh-cCceEEEeecCCCCCCC------------CCHHHHHhhccc--C
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQR-KQVEVRHFDLLPERNWE------------VDLDAVEALADK--N  180 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~------------~~~~~l~~~~~~--~  180 (301)
                      ++++.+++.+..  ++++|++.+|+|+++...... .|.....+......++.            .|++.+++.+++  .
T Consensus       120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  199 (429)
T 3k28_A          120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD  199 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence            999999988864  678999999999865433222 22221111111111110            178899988863  2


Q ss_pred             ccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..++++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ +.+. ......++...++   .+|||.+++ |
T Consensus       200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~~~~di---~t~sK~~~~-G  273 (429)
T 3k28_A          200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY-NCGQGYYGVTPDL---TCLGKVIGG-G  273 (429)
T ss_dssp             GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST-THHHHHHTCCCSE---EEECGGGGT-T
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chHHHHhCCCCce---ehhhhhhcC-C
Confidence            344555566 44556555 6788999999999999999999999987 5432 1112222222233   378999874 9


Q ss_pred             ceeEEEEeeCCCCcccchhHHHHHHhhh----cccCCCccccccc
Q 022213          259 WRFGWLVTNDPNGIFQKSGIIDSIKDCL----SIYSDIPTFIQVC  299 (301)
Q Consensus       259 ~rvG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~q~~  299 (301)
                      +|+||++++.        ++++.++...    ....+.++++|.+
T Consensus       274 ~~iG~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~a~aa  310 (429)
T 3k28_A          274 LPVGAYGGKA--------EIMRQVAPSGPIYQAGTLSGNPLAMAA  310 (429)
T ss_dssp             SCCEEEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred             CCeEEEEEcH--------HHHhhhccCCCccccCCCCCChHHHHH
Confidence            9999998843        4666664421    1123455565543

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.86  E-value=4.4e-22  Score=178.14  Aligned_cols=194  Identities=11%  Similarity=0.065  Sum_probs=138.1

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC---CCCCCCC---CCC----CHHHHHHHHHHHhhhCCCCCCCCCEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG---KFNCYAT---NSG----IPPARRAIADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~---~~~~Y~~---~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~  111 (301)
                      +.+++++.|.      .++|+.+.+++.+.+...   ....|..   ..+    ..++++.+++++    +.. ++++|+
T Consensus         2 ~~~~~~~~g~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~v~   70 (360)
T 1w23_A            2 KQVFNFNAGP------SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIP-NDYQIL   70 (360)
T ss_dssp             CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEE
T ss_pred             CceEeecCCC------cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEE
Confidence            3578888885      256788999988877531   0111211   122    234555555555    432 357999


Q ss_pred             EcCCH-HHHHHHHHHHhcCC---CCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHh-hcccCccEEEE
Q 022213          112 VTLGC-KQAVEVILSVLARP---GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEA-LADKNTAAMVI  186 (301)
Q Consensus       112 ~t~g~-~~al~~~~~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l  186 (301)
                      +|+|+ ++++..++.+++.+   ||.|+++.++|..+ ..++..| +++.+++++++++ +|++++++ .++++++++++
T Consensus        71 ~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~k~v~~  147 (360)
T 1w23_A           71 FLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNENDAYLHI  147 (360)
T ss_dssp             EESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTEEEEEE
T ss_pred             EECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccCc-CCccchHhhccCCCCCEEEE
Confidence            99999 99999999999865   56677776666543 3456789 9999998643333 78889988 88778999999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++|+||||.+++  ++.      ++||+++|+|++|+.+..    +.++..+     .++++|+||.++.+|  +||+++
T Consensus       148 ~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~----~~~~~~~-----di~~~s~sK~~~~~G--~G~~~~  208 (360)
T 1w23_A          148 TSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR----PLKVNQF-----GMIYAGAQKNLGPSG--VTVVIV  208 (360)
T ss_dssp             ESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS----CCCGGGC-----SEEEEETTTTTSCTT--CEEEEE
T ss_pred             eCCCCCcceecc--ccc------ccCCceEEEechhhcCCC----CcCcccC-----CEEEEEcccccCCCC--cEEEEE
Confidence            999999999987  222      389999999999987442    2233333     188999999998666  999998


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      ++
T Consensus       209 ~~  210 (360)
T 1w23_A          209 KK  210 (360)
T ss_dssp             EH
T ss_pred             cH
Confidence            64

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.85  E-value=2.7e-21  Score=177.38  Aligned_cols=215  Identities=16%  Similarity=0.111  Sum_probs=145.6

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.++||..|.+.. + +. .++.+.+++.++++...  .|..   ..+++.++++++.+.++   ++++|++|+|++
T Consensus        49 ~~g~~~lD~~~~~~~~-~-lG~~~p~v~~a~~~~~~~~~--~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggs  118 (427)
T 3fq8_A           49 VDGNRYIDYVGTWGPA-I-CGHAHPEVIEALKVAMEKGT--SFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGT  118 (427)
T ss_dssp             TTSCEEEESSGGGTTC-T-TCBTCHHHHHHHHHHHTTCS--CCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHH
T ss_pred             CCCCEEEECCCchhhh-c-cCCCCHHHHHHHHHHHHhCC--CcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHH
Confidence            3578899999885432 1 32 57899999999887543  2332   34677777777776554   578999999999


Q ss_pred             HHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhc-Cce-------------------EEEeecCCCCCCCCCHHHHHh
Q 022213          118 QAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRK-QVE-------------------VRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       118 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-g~~-------------------~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      ++++.+++...  ..+++|++.+|+|+++....... +..                   +..++.       .|++.|++
T Consensus       119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  191 (427)
T 3fq8_A          119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHH
Confidence            99999995442  24589999999998653322221 111                   122221       18899999


Q ss_pred             hccc---CccEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          176 LADK---NTAAMVIINPGNPCGNVFT-YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       176 ~~~~---~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++   +++++++..++|++|.+.+ .+.+++|.++|++||+++|+||+|.++ +.+.. .....++...+   +.|+|
T Consensus       192 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~-~~~~~~~~~~d---i~t~s  266 (427)
T 3fq8_A          192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG-GVQEKFGVTPD---LTTLG  266 (427)
T ss_dssp             HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT-HHHHHTTCCCS---EEEEC
T ss_pred             HHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc-hhhHhcCCCCC---hhhhh
Confidence            8865   4455555555677787666 566999999999999999999999987 44322 11222222223   34889


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |.++ +|+|+||++++.        ++++.++.
T Consensus       267 K~~~-~G~~~G~~~~~~--------~~~~~~~~  290 (427)
T 3fq8_A          267 KIIG-GGLPVGAYGGKR--------EIMQLVAP  290 (427)
T ss_dssp             GGGG-TTSSCEEEEECH--------HHHTTBTT
T ss_pred             hhhh-CCcceEEEEEcH--------HHHHhhcc
Confidence            9988 799999998733        46666654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.85  E-value=2.9e-21  Score=177.58  Aligned_cols=206  Identities=14%  Similarity=0.077  Sum_probs=139.0

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+|+|+.|.+.....+ .++.+.+++.++++......|     ..++++++++.+.+..+   ..++|++|+|+++
T Consensus        53 ~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~l~~~la~~~~---~~~~v~~~~sgse  123 (434)
T 2epj_A           53 VDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWLYGA-----PGEAEVLLAEKILGYVK---RGGMIRFVNSGTE  123 (434)
T ss_dssp             TTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSS-----CCHHHHHHHHHHHHHHC---TTCEEEEESSHHH
T ss_pred             CCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHH
Confidence            35778999998864321122 578899999999875322222     23445555555544332   4689999999999


Q ss_pred             HHHHHHHH---hcCCCCEEEEcCCCCcchHHHHH--------------hcCc------eEEEeecCCCCCCCCCHHHHHh
Q 022213          119 AVEVILSV---LARPGANVLLPRPGWPYYEGIAQ--------------RKQV------EVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       119 al~~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~--------------~~g~------~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      |++.+++.   +. +++.|++.+|+|+++...+.              ..|+      .+..++.       .|++.|++
T Consensus       124 A~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~  195 (434)
T 2epj_A          124 ATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER  195 (434)
T ss_dssp             HHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred             HHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence            99999987   44 46788888999987533221              1122      2333432       37899998


Q ss_pred             hccc--CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          176 LADK--NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       176 ~~~~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++  ...++++++| +|+||.+. +.+.+++|.++|++||+++|+||+|..+ ..+. ...+..++...++   .|||
T Consensus       196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~di---~s~s  270 (434)
T 2epj_A          196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL-EGAQGYFNIEGDI---IVLG  270 (434)
T ss_dssp             HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-THHHHHHTCCCSE---EEEE
T ss_pred             HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-chhhHHhCCCCCe---eeec
Confidence            8864  2334555666 56799876 6999999999999999999999999976 3232 1112222222233   3899


Q ss_pred             ccCCCCcceeEEEEee
Q 022213          252 KRWLVPGWRFGWLVTN  267 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~  267 (301)
                      |.++. |+|+||++++
T Consensus       271 K~l~~-G~~~G~v~~~  285 (434)
T 2epj_A          271 KIIGG-GFPVGAVAGS  285 (434)
T ss_dssp             GGGGT-TSSCEEEEEC
T ss_pred             chhcC-Ccceeeeeec
Confidence            99886 9999999984

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.85  E-value=2.4e-21  Score=179.49  Aligned_cols=226  Identities=16%  Similarity=0.100  Sum_probs=150.5

Q ss_pred             CCC--CeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           40 DPR--PVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        40 ~~~--~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      +++  .+|||..|....  .++ .++.+.+++.++++...  .+....+..+.+.++++.+.+..+  .+.++|++|+|+
T Consensus        71 dG~~~~ylD~~s~~~~~--~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sG  144 (457)
T 3tfu_A           71 DGQPIEVLDAMSSWWTA--IHGHGHPALDQALTTQLRVMN--HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSG  144 (457)
T ss_dssp             TTEEEEEEETTHHHHTC--TTCBTCHHHHHHHHHHHHHCS--CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSH
T ss_pred             CCCeeEEEECCCcHhhh--ccCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcH
Confidence            577  889998873211  122 56889999998887532  121111223444445555444333  456799999999


Q ss_pred             HHHHHHHHHHhcC-------CC-CEEEEcCCCCcchHHHHHhcC--------------ceEEEeecCCCCCCCCCHHHHH
Q 022213          117 KQAVEVILSVLAR-------PG-ANVLLPRPGWPYYEGIAQRKQ--------------VEVRHFDLLPERNWEVDLDAVE  174 (301)
Q Consensus       117 ~~al~~~~~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~l~  174 (301)
                      ++|++.+++.+..       +| ++|++.+++|+++.......+              .....++.........|++.|+
T Consensus       145 seA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le  224 (457)
T 3tfu_A          145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFE  224 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHH
Confidence            9999999998875       55 589999999987644443331              1233333322211124788898


Q ss_pred             hhcc---cCccEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          175 ALAD---KNTAAMVIIN-PGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       175 ~~~~---~~~~~v~l~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                      +.++   ++++++++.. ++|++|.++ +.+.+++|.++|++||+++|+||+|.++.+.+.. ..+..++...+++   |
T Consensus       225 ~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~-~a~~~~~~~pdii---t  300 (457)
T 3tfu_A          225 AQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGAL-FAADHAGVSPDIM---C  300 (457)
T ss_dssp             HHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCSEE---E
T ss_pred             HHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccch-hHhHhcCCCceEE---E
Confidence            8886   4556666666 689999876 7788999999999999999999999987665532 2333333334445   8


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHH
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIK  283 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~  283 (301)
                      |||.++...+|+||++++.        ++++.+.
T Consensus       301 ~sK~l~gG~~~lG~v~~~~--------~i~~~~~  326 (457)
T 3tfu_A          301 VGKALTGGYLSLAATLCTA--------DVAHTIS  326 (457)
T ss_dssp             ECGGGGTTSSCCEEEEEEH--------HHHHHHH
T ss_pred             EChhhhCCCcceEEEEEcH--------HHHHHhh
Confidence            9998654337999999853        5777775

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.85  E-value=1.5e-20  Score=174.47  Aligned_cols=206  Identities=8%  Similarity=0.022  Sum_probs=144.0

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc----CC---CCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS----GK---FNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~----~~---~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +++|.|+.+...     +.|+.+.+++.+.+..    +.   ...|.+ ..-...+++.+++++      +.++++|++|
T Consensus        66 ~~~iyld~~~~g-----~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~t  134 (465)
T 3e9k_A           66 ENAIYFLGNSLG-----LQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV------GANEKEIALM  134 (465)
T ss_dssp             CBCEECBTTTSC-----CEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH------TCCGGGEEEC
T ss_pred             CCeEEecCCccC-----CChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc------CCCcCCEEEE
Confidence            467888777543     2233444444443321    11   111211 123366888888887      4568899999


Q ss_pred             CCHHHHHHHHHHHhcCCCC---EEEEcCCCCcch----HHHHHhcCceEEE--eecC-CCCCCCCCHHHHHhhcc---cC
Q 022213          114 LGCKQAVEVILSVLARPGA---NVLLPRPGWPYY----EGIAQRKQVEVRH--FDLL-PERNWEVDLDAVEALAD---KN  180 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd---~Vl~~~p~~~~~----~~~~~~~g~~~~~--~~~~-~~~~~~~~~~~l~~~~~---~~  180 (301)
                      +|++++++.++.++.++||   +|+++.|+|++.    ...++..|.++..  +.+. .++++.+|++++++.++   ++
T Consensus       135 ~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~  214 (465)
T 3e9k_A          135 NALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDS  214 (465)
T ss_dssp             SCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCC
Confidence            9999999999999987655   599999999874    3366678887532  1111 23456689999999986   56


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcce
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR  260 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~r  260 (301)
                      ++++++++|+||||.+++   +++|.++|+++|+++|+|++++...    .+..+..++.   .++++|++|.++....+
T Consensus       215 ~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~----~~~~~~~~~~---D~~~~s~~K~l~~gp~~  284 (465)
T 3e9k_A          215 IAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGN----VELYLHDWGV---DFACWCSYKYLNAGAGG  284 (465)
T ss_dssp             EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTT----SCCCHHHHTC---CEEEECSSSTTCCCTTC
T ss_pred             eEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCC----cCCchhhcCC---CEEEECcccccccCCCc
Confidence            888999999999999999   7888899999999999999988522    2222322222   38899999997433337


Q ss_pred             eEEEEeeC
Q 022213          261 FGWLVTND  268 (301)
Q Consensus       261 vG~~~~~~  268 (301)
                      +|+++++.
T Consensus       285 ~g~l~~~~  292 (465)
T 3e9k_A          285 IAGAFIHE  292 (465)
T ss_dssp             CCEEEECG
T ss_pred             eEEEEEcH
Confidence            89998754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.85  E-value=2.7e-21  Score=173.01  Aligned_cols=182  Identities=15%  Similarity=0.126  Sum_probs=132.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCC--EEEEcCCCCcchHH---HHHhcC
Q 022213           78 NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGA--NVLLPRPGWPYYEG---IAQRKQ  152 (301)
Q Consensus        78 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd--~Vl~~~p~~~~~~~---~~~~~g  152 (301)
                      ..|++..+..+|++++++++.      .  +..++++|+++++..++++++++||  .|+++.++|.....   .....|
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~------~--~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g  112 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLG------M--DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHP  112 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred             ccccCChHHHHHHHHHHHHhC------C--CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccC
Confidence            357776688999999999983      2  3345557888999999999998888  67776666553322   345668


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCccc--ccCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGHL--TFGS  229 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~--~~~~  229 (301)
                      .+++.++.   +++.+|++++++..  +++++++++|+||| |.+++.+++++|+++|++||+++|+|++|...  .+.+
T Consensus       113 ~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~  187 (357)
T 3lws_A          113 IETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE  187 (357)
T ss_dssp             CEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT
T ss_pred             cEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC
Confidence            88887763   34569999999874  38899999999998 99999999999999999999999999998721  1112


Q ss_pred             CCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          230 IPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       230 ~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      .....+.   ...+ +++.|+||+++.++.  ||++++        ++++++++...
T Consensus       188 ~~~~~~~---~~~d-~~~~s~sK~~~~~~g--g~~~~~--------~~~~~~~~~~~  230 (357)
T 3lws_A          188 KTAAEIA---GLFD-SIYISFYKGLGGIAG--AILAGP--------AAFCQTARIWK  230 (357)
T ss_dssp             CCHHHHH---TTSS-EEEEESSSTTCCSSC--EEEEEC--------HHHHHHHHHHH
T ss_pred             CChHHHH---hcCC-EEEEeccccCCCCce--EEEEcC--------HHHHHHHHHHH
Confidence            1111111   1112 447899999844432  998873        25777776543

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.85  E-value=8e-21  Score=176.84  Aligned_cols=227  Identities=14%  Similarity=0.101  Sum_probs=155.8

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      .+++.+|||..|....  .++ .++.+.+++.++++...  .|....+..+.+.++++++.+..+  .+.++|++++|++
T Consensus        51 ~~G~~ylD~~s~~~~~--~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGs  124 (476)
T 3i5t_A           51 EDGRRLIDGPAGMWCA--QVGYGRREIVDAMAHQAMVLP--YASPWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGS  124 (476)
T ss_dssp             TTCCEEEETTHHHHTC--TTCBCCHHHHHHHHHHHHHCC--CCCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHH
T ss_pred             CCCCEEEECCCchhhc--cCCCCCHHHHHHHHHHHHhcc--CcccCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchH
Confidence            4578899998883211  122 47889999999887532  122224567889999999988654  3456999999999


Q ss_pred             HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCce-------------EEEeecCCC-CCCCCC------
Q 022213          118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQVE-------------VRHFDLLPE-RNWEVD------  169 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~-~~~~~~------  169 (301)
                      +|++.+++.+..        .+++|++.+|+|+++.......+..             ...++.... ..+..+      
T Consensus       125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (476)
T 3i5t_A          125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD  204 (476)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence            999999999863        3579999999999875544433221             222221110 001122      


Q ss_pred             --HHHHHhhcc----cCccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc-ccCCC
Q 022213          170 --LDAVEALAD----KNTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG-LFGSI  241 (301)
Q Consensus       170 --~~~l~~~~~----~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~-~~~~~  241 (301)
                        ++.|++.++    +++.++++..++|++|. +.+.+.+++|.++|++||+++|+||+|..+.+.+.. ..+. .++-.
T Consensus       205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~-~~~~~~~~v~  283 (476)
T 3i5t_A          205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEW-FASEKVFGVV  283 (476)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-CHHHHTTCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCc-eeeecccCCC
Confidence              678888775    23455555556777885 788899999999999999999999999987665542 2233 33333


Q ss_pred             CCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          242 VPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      .+++   ++||.++. | +|+|+++++.        ++++.+..
T Consensus       284 pdi~---t~sK~l~~-G~~plg~v~~~~--------~i~~~~~~  315 (476)
T 3i5t_A          284 PDII---TFAKGVTS-GYVPLGGLAISE--------AVLARISG  315 (476)
T ss_dssp             CSEE---EECGGGGT-TSSCCEEEEECH--------HHHHTTSG
T ss_pred             cchh---hhhhhhcC-CCcCeEEEEECH--------HHHHHHhc
Confidence            3444   68999774 8 9999999843        47777765

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.85  E-value=2.9e-20  Score=170.48  Aligned_cols=157  Identities=20%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEe-ec
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHF-DL  160 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~-~~  160 (301)
                      ..++++.+++++..      +  ..++++++++|+..++.+++++||+|+++.+.|.++...+    +..|++++++ +.
T Consensus        60 ~~~l~~~la~~~g~------~--~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  131 (421)
T 2ctz_A           60 VDVLEKRLAALEGG------K--AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE  131 (421)
T ss_dssp             HHHHHHHHHHHHTC------S--EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred             HHHHHHHHHHHhCC------C--ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence            47899999999832      2  3455555699999999999999999999999999876554    6789999888 65


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCC-cccccCCCCCCCccccC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY-GHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~  239 (301)
                             .|++++++.++++++++++++|+||||.+.+   +++|.++|+++|+++|+|++| +.. +...   ++ .+.
T Consensus       132 -------~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~~---~~-~~~  196 (421)
T 2ctz_A          132 -------ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR---PL-AWG  196 (421)
T ss_dssp             -------CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC---GG-GGT
T ss_pred             -------CCHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccCC---cc-ccC
Confidence                   2789999999888999999999999999999   889999999999999999999 542 2221   12 122


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         ..+++.|+||.++.+|.|+|++++.+
T Consensus       197 ---~Di~~~s~~K~l~~~g~~~G~~~~~~  222 (421)
T 2ctz_A          197 ---AALVTHSLTKWVGGHGAVIAGAIVDG  222 (421)
T ss_dssp             ---CSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred             ---CeEEEECCcccccCCCCcEEEEEEec
Confidence               23899999999999999999998863

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.85  E-value=1.3e-20  Score=171.57  Aligned_cols=169  Identities=17%  Similarity=0.164  Sum_probs=131.9

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH-----HhcCceEEEeec
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA-----QRKQVEVRHFDL  160 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~-----~~~g~~~~~~~~  160 (301)
                      ..+|++.++++.        ..+++++++++++|+.. +..++++||+|+++.|.|.+....+     ...|+++++++.
T Consensus        69 ~~~l~~~la~l~--------g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~  139 (400)
T 3nmy_A           69 RFAYERCVAALE--------GGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL  139 (400)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred             HHHHHHHHHHHh--------CCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence            456778888876        23467778888999998 5678899999999999999655443     345999998876


Q ss_pred             CCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                             .|++.++++++++++++++++|+||||.+.+   +++|+++|++||+++|+|++|....+..    ++. +  
T Consensus       140 -------~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~----~~~-~--  202 (400)
T 3nmy_A          140 -------TDPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR----PLS-L--  202 (400)
T ss_dssp             -------TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----GGG-G--
T ss_pred             -------CCHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC----hhh-c--
Confidence                   2889999999888999999999999999998   8899999999999999999998644321    111 1  


Q ss_pred             CCCEEEEecCcccCCCCcceeEE-EEeeCCCCcccchhHHHHHHhhhc
Q 022213          241 IVPVITLGSISKRWLVPGWRFGW-LVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~-~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                       +..+++.|+||.++.+|.++|+ +++...      ++++++++....
T Consensus       203 -g~div~~S~sK~l~g~g~~~gG~~vv~~~------~~~~~~l~~~~~  243 (400)
T 3nmy_A          203 -GADLVVHSATKYLNGHSDMVGGIAVVGDN------AELAEQMAFLQN  243 (400)
T ss_dssp             -TCSEEEEETTTTTTCSSSCCCEEEEECSC------HHHHHHHHHHHH
T ss_pred             -CCcEEEecCccccCCCCCcceeEEEEeCC------HHHHHHHHHHHH
Confidence             2238999999999999999877 444332      357777766543

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.85  E-value=1.9e-21  Score=181.30  Aligned_cols=208  Identities=12%  Similarity=0.047  Sum_probs=148.4

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHHHhhhCCCCCCC--CCEEEc
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC------YATNSGIPPARRAIADYLSRDLPYKLSA--DDVYVT  113 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~t  113 (301)
                      .+.|+|..+++      ++++.+.+++.+.+.+.-...      |+...+..++++.+.+++.+.+|...+.  .+|+++
T Consensus        44 ~~~i~L~a~e~------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~  117 (483)
T 1rv3_A           44 RVGLELIASEN------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY  117 (483)
T ss_dssp             HSSEECCTTCC------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS
T ss_pred             hcCeEEEcCCC------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC
Confidence            46899977752      357888899888776421111      2222334677877777777777654221  248888


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcC--ceEEEeecCCCCCCCCCHHHHHhhcc-cCcc
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEG--------IAQRKQ--VEVRHFDLLPERNWEVDLDAVEALAD-KNTA  182 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  182 (301)
                      +|+ +++..++.++++|||+|+++++.|.++..        .+...|  ...+.+++++ .++.+|+++|++.++ .+++
T Consensus       118 sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~-~~~~iD~d~le~~i~~~~tk  195 (483)
T 1rv3_A          118 SGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLFHPK  195 (483)
T ss_dssp             SHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCS
T ss_pred             CcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcccc-CCCcCCHHHHHHHHhhcCCc
Confidence            887 89988899999999999999998886642        122333  3444444443 357799999999998 6899


Q ss_pred             EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      +|++ +++|++ .+++   +++|.++|+++|+++|+|++|. .+.+.+....++.  .   ..+++.|+||++  .|.|.
T Consensus       196 lIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--~---~div~~s~~K~l--~Gprg  263 (483)
T 1rv3_A          196 LIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--H---CHVVTTTTHKTL--RGCRA  263 (483)
T ss_dssp             EEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--T---CSEEEEESSGGG--CCCSC
T ss_pred             EEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--C---CcEEEecCcccC--CCCCc
Confidence            9888 999988 8888   8888999999999999999986 3333333333332  1   128889999985  68889


Q ss_pred             EEEEeeCC
Q 022213          262 GWLVTNDP  269 (301)
Q Consensus       262 G~~~~~~~  269 (301)
                      ||+++++.
T Consensus       264 G~i~~~~~  271 (483)
T 1rv3_A          264 GMIFYRRG  271 (483)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcch
Confidence            99998764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.85  E-value=4e-21  Score=172.24  Aligned_cols=194  Identities=10%  Similarity=0.028  Sum_probs=137.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-C-EEE
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYATNSGIPPARRAIADYLSRDLPYKLSAD-D-VYV  112 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~-i~~  112 (301)
                      .++.++.|.      .++|+.+.+++.+.+.+..        ..+|.+  +..++++++.+.+.+.+|.  +++ + +++
T Consensus         4 ~~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~~i~~   73 (362)
T 2c0r_A            4 RAYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGN--PTGYKVLFI   73 (362)
T ss_dssp             CCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTC--CSSEEEEEE
T ss_pred             ceeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEE
Confidence            467776663      5678899999988775310        111211  2345667777777666663  443 5 578


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcch--HHHHHhcCceEEEeecCCC--CCCCCCHHHHHhhcccCccEEEEcC
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYY--EGIAQRKQVEVRHFDLLPE--RNWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      |+|+++++..++.+++++||+|+++.+.+...  ...++..| +++.+++..+  .+..++.++++  ++++++++++++
T Consensus        74 t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~  150 (362)
T 2c0r_A           74 QGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTS  150 (362)
T ss_dssp             SSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEES
T ss_pred             CCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeC
Confidence            89999999999999999999999887765442  35667789 9999987532  23334665553  566889999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      |+||||..++  ++++|      +|+++|+|++|.....    +..+..+     .+++.|+||+++.+|  +||++++.
T Consensus       151 ~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~----~~~~~~~-----d~~~~s~~K~~g~~G--~G~l~~~~  211 (362)
T 2c0r_A          151 NETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR----PFDLNQF-----GLVYAGAQKNLGPSG--VTVVIVRE  211 (362)
T ss_dssp             EETTTTEECS--SCCCC------TTSCEEEECTTTTTSS----CCCGGGC-----SEEEEETTTTTCCSS--CEEEEEEG
T ss_pred             CcCccceecc--ccccc------CCCEEEEEChhhccCC----ccchhHC-----cEEEEeccccccCcC--cEEEEEcH
Confidence            9999999744  25554      7999999999986432    2223322     277889999999888  99999865

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.84  E-value=1.8e-20  Score=174.27  Aligned_cols=245  Identities=13%  Similarity=0.054  Sum_probs=160.1

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+|||..|.... +--..++.+.+++.++++.... .|....+..+.+.++++.+.+..+  .+.++|++++|++
T Consensus        51 d~~G~~ylD~~s~~~~~-~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGs  126 (472)
T 3hmu_A           51 DSEGEEILDAMAGLWCV-NIGYGRDELAEVAARQMRELPY-YNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGS  126 (472)
T ss_dssp             ETTCCEEECTTHHHHTC-TTCBCCHHHHHHHHHHHHHCSC-CCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHH
T ss_pred             ECCCCEEEECCCchhhc-cCCCCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHH
Confidence            34578899998872211 1112468899999998875332 233333445667777777766543  3567999999999


Q ss_pred             HHHHHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhcCc------------eEEEeecCC--C-CCCCCC-----
Q 022213          118 QAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQV------------EVRHFDLLP--E-RNWEVD-----  169 (301)
Q Consensus       118 ~al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~~~-----  169 (301)
                      +|++.+++.+..        ++++|++.+++|+++.......+.            .+..++...  . ..+ .+     
T Consensus       127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~  205 (472)
T 3hmu_A          127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFG  205 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHH
Confidence            999999999875        468999999999987544443332            233444211  0 111 23     


Q ss_pred             ---HHHHHhhccc---CccEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          170 ---LDAVEALADK---NTAAMVIINP-GNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       170 ---~~~l~~~~~~---~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                         ++.|++.+++   ...+++++.| ++++|.+. +.+.+++|.++|++||+++|+||+|..+.+.+.. .....++..
T Consensus       206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~a~~~~~v~  284 (472)
T 3hmu_A          206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW-FGTQTMGIR  284 (472)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-CHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc-chhHHhCCC
Confidence               6778877752   2334455555 66677655 8889999999999999999999999987665532 222333333


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh--hc-ccCCCccccccc
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC--LS-IYSDIPTFIQVC  299 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~q~~  299 (301)
                      .+++   +|||+++..|+|+||++++.        ++++.+...  .. ...+.++++|.|
T Consensus       285 pdi~---t~sK~l~gg~~plG~v~~~~--------~i~~~~~~~~~~~~~t~~~np~a~aA  334 (472)
T 3hmu_A          285 PHIM---TIAKGLSSGYAPIGGSIVCD--------EVAHVIGKDEFNHGYTYSGHPVAAAV  334 (472)
T ss_dssp             CSEE---EECGGGTTTSSCCEEEEEEH--------HHHHHHTTSCBCCCCTTTTCHHHHHH
T ss_pred             Ccee---eechhhhcCCcceEEEEECH--------HHHHhcccCCccccCCCCCCHHHHHH
Confidence            3444   68999877779999999843        577777321  11 123455666554

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.84  E-value=1.6e-20  Score=171.53  Aligned_cols=215  Identities=17%  Similarity=0.135  Sum_probs=132.9

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-----CCCCCHHHHHHHH-HHHhhhCCCCCCCCCEEEcCCH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-----TNSGIPPARRAIA-DYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-----~~~g~~~lr~~ia-~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      +.++|..+..      +.++.+.+++.+++...-...|+     ......+.+++++ +.+.+..+  .+. ..++++|+
T Consensus        33 ~~i~l~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~-~~v~~~~G  103 (425)
T 3ecd_A           33 SQVELIASEN------IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN--AGH-ANVQPHSG  103 (425)
T ss_dssp             HSEECCTTCC------CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT--CSE-EECCCSSH
T ss_pred             cceeeecccC------CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC--CCC-ceeecCch
Confidence            5688866642      12788889988877432111121     1111111333333 33333222  222 23458889


Q ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcc---hHHHHHhcCc--eEEEeecCCCCCCCCCHHHHHhhcc-cCccEEEEcCCC
Q 022213          117 KQAVEVILSVLARPGANVLLPRPGWPY---YEGIAQRKQV--EVRHFDLLPERNWEVDLDAVEALAD-KNTAAMVIINPG  190 (301)
Q Consensus       117 ~~al~~~~~~l~~~gd~Vl~~~p~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~  190 (301)
                      ++++..++.+++++||+|+++.|+|.+   +.......|.  +.+.++..+ +++.+|++.+++.++ .+++++++++|+
T Consensus       104 s~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~  182 (425)
T 3ecd_A          104 AQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLIIAGFSA  182 (425)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEEECSC
T ss_pred             HHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEEEEcccc
Confidence            999999999999999999999999987   3322223444  445555432 356799999999986 478999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ||+  ..+   +++|.++|++||+++|+|++|. .+.+.+..+..+...     .+++.|+||++  +|.|+||++++++
T Consensus       183 ~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~-----di~~~s~sK~l--~g~~~g~~~~~~~  250 (425)
T 3ecd_A          183 YPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHA-----HVVTSTTHKTL--RGPRGGFVLTNDE  250 (425)
T ss_dssp             CCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTC-----SEEEEESSGGG--CCCSCEEEEESCH
T ss_pred             CCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcC-----cEEEecCCccc--CCCCcEEEEeCCH
Confidence            964  444   7899999999999999999954 334444333333221     18899999996  6789999998542


Q ss_pred             CCcccchhHHHHHHhhh
Q 022213          270 NGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (301)
                             ++...++...
T Consensus       251 -------~~~~~~~~~~  260 (425)
T 3ecd_A          251 -------EIAKKINSAV  260 (425)
T ss_dssp             -------HHHHHHHHHH
T ss_pred             -------HHHHHHHhhh
Confidence                   3666665543

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.84  E-value=7.6e-21  Score=174.53  Aligned_cols=223  Identities=12%  Similarity=0.073  Sum_probs=138.8

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.++||..|.... +.-..++.+.+++.++++......|+.     +.+.++++.+.+..+   ..++|++|+|+++
T Consensus        50 ~~g~~ylD~~~~~~~~-~lG~~~p~v~~A~~~~~~~~~~~~~~~-----~~~~~la~~l~~~~~---~~~~v~~~~sGse  120 (429)
T 4e77_A           50 VDGKAYIDYVGSWGPM-ILGHNHPAIRQAVIEAVERGLSFGAPT-----EMEVKMAQLVTDLVP---TMDMVRMVNSGTE  120 (429)
T ss_dssp             TTCCEEEESSGGGTTC-TTCBTCHHHHHHHHHHHTTCSCCSSCC-----HHHHHHHHHHHHHST---TCSEEEEESSHHH
T ss_pred             CCCCEEEECCCchhcc-ccCCCCHHHHHHHHHHHHhCcccCCCC-----HHHHHHHHHHHhhCC---CCCEEEEeCcHHH
Confidence            3578899998885421 111257889999999987543222322     444445555444333   4789999999999


Q ss_pred             HHHHHHHHhc--CCCCEEEEcCCCCcchHHHHH-hcCceEEEeecCCCCCC------------CCCHHHHHhhccc--Cc
Q 022213          119 AVEVILSVLA--RPGANVLLPRPGWPYYEGIAQ-RKQVEVRHFDLLPERNW------------EVDLDAVEALADK--NT  181 (301)
Q Consensus       119 al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~------------~~~~~~l~~~~~~--~~  181 (301)
                      +++.+++...  ..++.|++.+++|+++..... ..+.....+......+.            ..|++.+++.+++  ..
T Consensus       121 a~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~  200 (429)
T 4e77_A          121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQE  200 (429)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTT
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCC
Confidence            9999998654  356899999999987643211 11111000000000000            0278999988864  34


Q ss_pred             cEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          182 AAMVIINPGNPCGNVF--TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~--~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      .++++++|+|++|...  +.+.+++|.++|++||+++|+||+|.++ ..+. ......++...++   .|+||.++ +|+
T Consensus       201 ~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-~~~~~~~~~~pdi---~t~sK~~~-~G~  274 (429)
T 4e77_A          201 VACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-AGAQDYYHVIPDL---TCLGKIIG-GGM  274 (429)
T ss_dssp             EEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT-TCHHHHTTCCCSE---EEEEGGGG-TTS
T ss_pred             EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc-chHHHhcCCCCCe---eeeccccc-CCC
Confidence            4567788876655333  3556999999999999999999999987 4432 2222233322333   38999987 799


Q ss_pred             eeEEEEeeCCCCcccchhHHHHHHh
Q 022213          260 RFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       260 rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      |+||++++.        ++++.++.
T Consensus       275 ~~G~~~~~~--------~~~~~l~~  291 (429)
T 4e77_A          275 PVGAFGGRR--------EVMNALAP  291 (429)
T ss_dssp             CCEEEEECH--------HHHTTBTT
T ss_pred             CeEEEEECH--------HHHHHhcc
Confidence            999998743        46666654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.83  E-value=2.7e-19  Score=167.56  Aligned_cols=202  Identities=13%  Similarity=0.086  Sum_probs=154.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEE---EcCCHHHHHHHHHHHhcCC-----
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVY---VTLGCKQAVEVILSVLARP-----  130 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~---~t~g~~~al~~~~~~l~~~-----  130 (301)
                      .+++.+.+++.+.+.... ..|....+..++++.+.+++.+.+|...++++++   +|+|+++++..++.++..+     
T Consensus        67 ~~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~  145 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR  145 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence            345678888887765422 2343334567788888888888777654455554   4999999999999888655     


Q ss_pred             ---CC-----EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHH
Q 022213          131 ---GA-----NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       131 ---gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                         ||     .|+++.++|..+...++..|++++.++++. +++.+|++++++++++++++|++++|+||||.+.+   +
T Consensus       146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l  221 (502)
T 3hbx_A          146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---V  221 (502)
T ss_dssp             HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---H
T ss_pred             HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---H
Confidence               77     999999999999999999999999998754 34779999999999988999999999999999999   7


Q ss_pred             HHHHHHHHhC------CCeEEEccCCccccc---CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          203 QEIAEMARKL------RVMVVADEVYGHLTF---GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       203 ~~i~~~~~~~------~~~ii~D~~y~~~~~---~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++|.++|+++      |+++++|++|+.+..   .+.....+.   ...-.++..|.+|. ++.+.++||+++.+.
T Consensus       222 ~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~---~~~~D~v~~s~hK~-l~~p~g~G~~~~~~~  293 (502)
T 3hbx_A          222 KLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR---LPLVKSINVSGHKY-GLVYAGIGWVIWRNK  293 (502)
T ss_dssp             HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT---STTEEEEEEETTTT-TCCCSSCEEEEESSG
T ss_pred             HHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC---CCCceEEEECcccc-cCCCCCeEEEEEeCH
Confidence            7888888888      999999999986541   222111111   11112667789997 667788999988654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.83  E-value=5.6e-19  Score=165.51  Aligned_cols=195  Identities=9%  Similarity=-0.017  Sum_probs=147.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC--------CC-----C
Q 022213           66 DAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR--------PG-----A  132 (301)
Q Consensus        66 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--------~g-----d  132 (301)
                      +.+...+. .....|....+..++++++.+++.+.+|.+.+.+++++|+|+|+++..++.++.+        +|     +
T Consensus       111 ~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~  189 (504)
T 2okj_A          111 EWLTSTAN-TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK  189 (504)
T ss_dssp             HHHHHHHC-CBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCC
T ss_pred             HHHHHhhc-cCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCC
Confidence            44444443 2223566555566778888777777666443367899999999999999998853        56     6


Q ss_pred             -EEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHH
Q 022213          133 -NVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHL  202 (301)
Q Consensus       133 -~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l  202 (301)
                       .|+++.+.|.++...++..|.   +++.++++  .++.+|++.|++.+++      ++++|++++|+||||.+.+   +
T Consensus       190 ~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l  264 (504)
T 2okj_A          190 LVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---I  264 (504)
T ss_dssp             EEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---H
T ss_pred             eEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---H
Confidence             788999999999888888877   78888874  3577999999998865      4788999999999999988   8


Q ss_pred             HHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          203 QEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       203 ~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++|+++|++||+++++|++|+.+.+..... ..+.... ..+ +++.|++|.++.| .++|+++++++
T Consensus       265 ~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~-~~D-~i~~~~hK~~~~p-~~~g~l~~~~~  329 (504)
T 2okj_A          265 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE-RAN-SVTWNPHKMMGVL-LQCSAILVKEK  329 (504)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG-GCS-EEEECTTSTTCCC-SCCEEEEESST
T ss_pred             HHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc-cCC-EEEECchhhcCCC-cceEEEEEECH
Confidence            889999999999999999999876532221 1222111 112 6677999998766 68999998664

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.82  E-value=6.8e-19  Score=165.15  Aligned_cols=199  Identities=10%  Similarity=-0.022  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcC------------
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLAR------------  129 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~------------  129 (301)
                      ..+.+.+...+... ...|....+..++++++++|+.+.+|...+.+.+++|+|+|+++..++.++.+            
T Consensus       110 ~~~~e~l~~~~~~~-~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~  188 (511)
T 3vp6_A          110 GLAGEWLTSTANTN-MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA  188 (511)
T ss_dssp             HHHHHHHHHHHCCC-SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred             HHHHHHHHHHhccC-CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence            34456666666533 34687777888999999999998888665567899999999999998888764            


Q ss_pred             --CCCEEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhcccC------ccEEEEcCCCCCcccCCC
Q 022213          130 --PGANVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADKN------TAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       130 --~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~  198 (301)
                        +++.|+++.+.|.++...++..|+   +++.++.+.  ++.+|++.|++.+++.      ++++++++++||||.+-+
T Consensus       189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~  266 (511)
T 3vp6_A          189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP  266 (511)
T ss_dssp             GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred             cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence              567899999999999999999998   888888753  4679999999998654      778899999999999977


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC-CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY-TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                         +++|+++|++||+++++|++|+......+.. ..+.... .. -+++.+++|+++.| ..+|++++++.
T Consensus       267 ---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~-~a-Dsv~~~~hK~l~~p-~g~g~l~~~~~  332 (511)
T 3vp6_A          267 ---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE-RA-NSVTWNPHKMMGVL-LQCSAILVKEK  332 (511)
T ss_dssp             ---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG-GC-SEEEECTTSTTCCC-SCCEEEEESST
T ss_pred             ---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc-cC-CEEEECcccccCCC-cCeEEEEEeCH
Confidence               8999999999999999999999765422111 1111111 11 15667999998776 77899988764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.82  E-value=1.9e-19  Score=167.95  Aligned_cols=200  Identities=12%  Similarity=0.089  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCC-------CCCEEEcCCHHHHHHHHHHHhcCC---
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLS-------ADDVYVTLGCKQAVEVILSVLARP---  130 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~t~g~~~al~~~~~~l~~~---  130 (301)
                      +..+.+.+...+.. ....|....+..++++++++++.+.+|.+.+       ...+++|+|+|+|+..++.++.++   
T Consensus        87 ~~~~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~  165 (486)
T 1js3_A           87 PAMLADMLCGAIGC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR  165 (486)
T ss_dssp             HHHHHHHHHHHHCC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhh
Confidence            44567777777643 3335665556789999999999887775432       246899999999999988776431   


Q ss_pred             ------CC--------E--EEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCcc------EEEEcC
Q 022213          131 ------GA--------N--VLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTA------AMVIIN  188 (301)
Q Consensus       131 ------gd--------~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~v~l~~  188 (301)
                            ||        .  |+++.+.|.++...++..|++++.++++  .++.+|++.|++.++++++      ++++++
T Consensus       166 ~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~  243 (486)
T 1js3_A          166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL  243 (486)
T ss_dssp             HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             hhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeC
Confidence                  43        3  7789999999999999999999999874  4677999999999976543      788899


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+||||.+-+   +++|+++|++||+++++|++|+.+.+..+.... +..+. ..+ .+..+++|.+++| +++||++++
T Consensus       244 ~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~-~ad-si~~~~hK~~~~p-~~~G~l~~~  317 (486)
T 1js3_A          244 GTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE-FAD-SFNFNPHKWLLVN-FDCSAMWVK  317 (486)
T ss_dssp             SCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG-GCS-EEEECHHHHSSCC-SSCEEEEES
T ss_pred             CCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcc-ccC-eeEEchhhhcCCC-cceEEEEEe
Confidence            9999999977   999999999999999999999976542211111 11111 123 4457899997776 899999986


Q ss_pred             CC
Q 022213          268 DP  269 (301)
Q Consensus       268 ~~  269 (301)
                      ++
T Consensus       318 ~~  319 (486)
T 1js3_A          318 RR  319 (486)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.81  E-value=1.9e-18  Score=156.54  Aligned_cols=157  Identities=13%  Similarity=0.205  Sum_probs=127.5

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI  123 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~  123 (301)
                      +|++..+.|      ..++.+.+++.+++...   .|.+..+..++|+++++++.      .  +++++++++++++..+
T Consensus         3 ~~~~~~~~~------~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~a   65 (390)
T 3b8x_A            3 MINYPLASS------TWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLM   65 (390)
T ss_dssp             --CBCSCCC------CCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHH
T ss_pred             ceeccCCCC------CCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHH
Confidence            455555543      34567888888888643   35555678999999999983      2  2678888888999999


Q ss_pred             HHHh-------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccC
Q 022213          124 LSVL-------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNV  196 (301)
Q Consensus       124 ~~~l-------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  196 (301)
                      +.++       .++||+|+++.++|.++...++..|.++++++++++ ++.+|++.+++.++++++++++++   ++|..
T Consensus        66 l~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~  141 (390)
T 3b8x_A           66 IAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNP  141 (390)
T ss_dssp             HHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCC
T ss_pred             HHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccCh
Confidence            9999       789999999999999999999999999999998653 467999999999988888888874   56666


Q ss_pred             CCHHHHHHHHHHHHhCCCeEEEccCCcc
Q 022213          197 FTYHHLQEIAEMARKLRVMVVADEVYGH  224 (301)
Q Consensus       197 ~~~~~l~~i~~~~~~~~~~ii~D~~y~~  224 (301)
                      .+   +++|.++|+++|+++|+|++|+.
T Consensus       142 ~~---~~~i~~l~~~~~~~li~D~a~~~  166 (390)
T 3b8x_A          142 NN---FDEINKIIGGRDIILLEDNCESM  166 (390)
T ss_dssp             CC---HHHHHHHHTTSCCEEEEECTTCT
T ss_pred             hh---HHHHHHHHHHcCCEEEEECcCcc
Confidence            66   88999999999999999999995

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.81  E-value=1e-19  Score=168.09  Aligned_cols=212  Identities=15%  Similarity=0.087  Sum_probs=142.2

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC---CCCHHHH--HHHH-HHHhhhCCCCCCCCCEEE-cCC
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN---SGIPPAR--RAIA-DYLSRDLPYKLSADDVYV-TLG  115 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~g~~~lr--~~ia-~~l~~~~~~~~~~~~i~~-t~g  115 (301)
                      +.|+|..+. +     +.++.+.+++.+.+.+.-...|+..   .|...++  ++++ +++.+.++  .+  .+.+ ++|
T Consensus        46 ~~i~l~~~~-~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~--~~~v~~~s  115 (447)
T 3h7f_A           46 DTLEMIASE-N-----FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AE--FANVQPHS  115 (447)
T ss_dssp             HSEECCTTC-C-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CS--EEECCCSS
T ss_pred             CceeEecCC-C-----CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CC--ceEEEeCC
Confidence            678885543 2     2378888988877753211123221   2444444  4444 55544333  22  2444 788


Q ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCCcch-H--HH--HHhcCceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCC
Q 022213          116 CKQAVEVILSVLARPGANVLLPRPGWPYY-E--GI--AQRKQVEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINP  189 (301)
Q Consensus       116 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~-~--~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p  189 (301)
                      +++++..++.+++++||+|+++.|+|.++ .  ..  ....+...+++++++ .++.+|++++++.++. +++++++++|
T Consensus       116 Gs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~i~~~~~  194 (447)
T 3h7f_A          116 GAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEFRPKVIIAGWS  194 (447)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHHCCSEEEEECS
T ss_pred             HHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhcCCeEEEEcCC
Confidence            89999999999999999999999998762 1  11  122344556666543 3456999999998853 6888888899


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +||++.  +   +++|.++|+++|+++|+|++|. .+.+.+..+.++..    . -+++.|+||++  +|+|.||++++.
T Consensus       195 ~~~~~~--~---l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~----~-di~~~s~sK~l--~G~~gG~i~~~~  262 (447)
T 3h7f_A          195 AYPRVL--D---FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPH----A-DVVSTTVHKTL--GGGRSGLIVGKQ  262 (447)
T ss_dssp             SCCSCC--C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT----C-SEEEEESSGGG--CCCSCEEEEECG
T ss_pred             CCCCcc--C---HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCC----C-cEEEecCCcCC--CCCCeEEEEECH
Confidence            999887  3   8999999999999999999974 34444432222211    1 17799999986  488999999743


Q ss_pred             CCCcccchhHHHHHHhh
Q 022213          269 PNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       269 ~~~~~~~~~~~~~~~~~  285 (301)
                              +++++++..
T Consensus       263 --------~~~~~l~~~  271 (447)
T 3h7f_A          263 --------QYAKAINSA  271 (447)
T ss_dssp             --------GGHHHHHHH
T ss_pred             --------HHHHHHhhh
Confidence                    366666554

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.81  E-value=1.3e-18  Score=162.77  Aligned_cols=201  Identities=15%  Similarity=0.114  Sum_probs=148.4

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh----c------
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL----A------  128 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l----~------  128 (301)
                      +.++.+.+++.....+.....|.......++++++.+++.+.+|.+ ..+++++|+|+++++..++.++    +      
T Consensus       111 ~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~  189 (497)
T 2qma_A          111 PLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGH  189 (497)
T ss_dssp             CBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence            4566776666555444334456554456788888778777766643 2378999999999999998874    2      


Q ss_pred             ---CC------CC-EEEEcCCCCcchHHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhcccC----cc--EEEEcCC
Q 022213          129 ---RP------GA-NVLLPRPGWPYYEGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADKN----TA--AMVIINP  189 (301)
Q Consensus       129 ---~~------gd-~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~--~v~l~~p  189 (301)
                         ++      || .|+++.+.|.++...+...|.   +++.++++  .++.+|+++|++.++++    ++  +++++++
T Consensus       190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~  267 (497)
T 2qma_A          190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAG  267 (497)
T ss_dssp             CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred             chhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCC
Confidence               12      46 799999999998888888876   78888874  35679999999988653    33  7788899


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +||||.+.+   +++|+++|++||+++++|++|+.+.+... .. .+..+. ..+ +++.|++|+++.| .++|++++++
T Consensus       268 ~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~-~~D-~i~~s~hK~l~~p-~~~G~l~~~~  340 (497)
T 2qma_A          268 TTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE-RAH-SISVDFHKLFYQT-ISCGALLVND  340 (497)
T ss_dssp             CTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG-GCS-EEEEETTTTTCCC-SSCEEEEESC
T ss_pred             CCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc-cCC-EEEEcchhccCCC-cceEEEEEeC
Confidence            999999988   88999999999999999999998765322 11 111121 112 6677999997777 6999999866


Q ss_pred             C
Q 022213          269 P  269 (301)
Q Consensus       269 ~  269 (301)
                      +
T Consensus       341 ~  341 (497)
T 2qma_A          341 K  341 (497)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.81  E-value=4.9e-20  Score=170.16  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=124.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           82 TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        82 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      +.....++++.+++ +    +  .+ +++++|+|+++++..++++++++||+|+++.|+|.++...+...|.++++++..
T Consensus        55 ~~~~~~~~~~~la~-~----g--~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~  126 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-H----S--DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETH  126 (446)
T ss_dssp             CSSHHHHHHHHHCS-C----T--TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred             cchHHHHHHHHHHh-c----C--CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence            33345677777776 5    2  33 689999999999999999999999999999999999988888999999998873


Q ss_pred             CCCC----CCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCcc
Q 022213          162 PERN----WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMG  236 (301)
Q Consensus       162 ~~~~----~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~  236 (301)
                      .+.+    +.+|++.+   +..+++++++++ +|++|.+.+   +++|+++|++||+++|+|++|+. +.|.+. +.+..
T Consensus       127 ~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~  198 (446)
T 2x3l_A          127 QSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTL  198 (446)
T ss_dssp             ECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGG
T ss_pred             eccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChH
Confidence            2222    45677777   445788999998 556999999   88999999999999999999996 435443 22332


Q ss_pred             ccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .++.+   +++.|+||.++ ++.++||+++++.
T Consensus       199 ~~g~D---i~~~S~~K~l~-~~~g~g~l~~~~~  227 (446)
T 2x3l_A          199 NYQAD---YVVQSFHKTLP-ALTMGSVLYIHKN  227 (446)
T ss_dssp             GGTCS---EEEECHHHHSS-SCTTCEEEEEETT
T ss_pred             HcCCC---EEEECCccccc-cccccEEEEEcCC
Confidence            33322   89999999633 3345899998664

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.81  E-value=1e-19  Score=165.88  Aligned_cols=204  Identities=13%  Similarity=0.080  Sum_probs=128.6

Q ss_pred             ChHHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE
Q 022213           60 TAVEAEDAIVDAVRSGKFNC------YATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~  133 (301)
                      .++.+.+++.+++.+.....      |........+++...+++.+.++  .++++|++++| ++++..++.+++++||+
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~~~gd~  118 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALLQPGDT  118 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHCCTTCE
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhcCCCCE
Confidence            46889999988774321111      22222333444433344444333  45566666665 88999999999999999


Q ss_pred             EEEcCCCCcchH---HHHHhcC--ceEEEeecCCCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHH
Q 022213          134 VLLPRPGWPYYE---GIAQRKQ--VEVRHFDLLPERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAE  207 (301)
Q Consensus       134 Vl~~~p~~~~~~---~~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~  207 (301)
                      |+++.|+|..+.   ......|  ...+.++.+  .++.+|++.+++.+++ +++++++++|+||+  ..+   +++|.+
T Consensus       119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~---l~~l~~  191 (420)
T 3gbx_A          119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--VVD---WAKMRE  191 (420)
T ss_dssp             EEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--CCC---HHHHHH
T ss_pred             EEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--ccC---HHHHHH
Confidence            999999997632   2222233  344444443  4567999999999876 58999998999874  566   889999


Q ss_pred             HHHhCCCeEEEccCCcccc-cCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          208 MARKLRVMVVADEVYGHLT-FGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       208 ~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +|++||+++|+||+|.... +.+..+..+..     ..|++.|+||+++  |.+.||+++++.-     +++...++..
T Consensus       192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~-----~di~~~s~sK~~~--g~~gg~~~~~~~~-----~~~~~~~~~~  258 (420)
T 3gbx_A          192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVPH-----AHVVTTTTHKTLA--GPRGGLILAKGGD-----EELYKKLNSA  258 (420)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHTTSSCCSTTT-----SSEEEEESSGGGC--SCSCEEEEESSCC-----HHHHHHHHHH
T ss_pred             HHHHcCCEEEEECCcchhceecccCCccccc-----CCEEEeecccCCC--CCCceEEEEcCCc-----HHHHHHhhhh
Confidence            9999999999999976433 33322222211     2388999999975  5556999985421     1366666554

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.80  E-value=2.2e-19  Score=165.95  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=137.6

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHH-H-HHHH---HHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAE-D-AIVD---AVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~-~-~~~~---~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      .+++.++||..|.+..  .+. .++.+. + ++.+   ++....  .|.+ .+..+.+.++++.+.+..+ ..+.++|++
T Consensus        51 ~~g~~ylD~~~~~~~~--~lG~~~p~v~~~~A~~~~~~~~~~~~--~~~~-~~~~~~~~~la~~la~~~~-~~~~~~v~~  124 (449)
T 2cjg_A           51 ITGRRYLDMFTFVASS--ALGMNPPALVDDREFHAELMQAALNK--PSNS-DVYSVAMARFVETFARVLG-DPALPHLFF  124 (449)
T ss_dssp             TTCCEEEESSHHHHTC--SSCBSCHHHHTCHHHHHHHHHHHTCC--CCTT-TCCCHHHHHHHHHHHHHHC-CTTCCEEEE
T ss_pred             CCCcEEEEccCCcccc--CCCCCCHHHHHHHHHHHHHHHHHhcC--CCCc-ccCCHHHHHHHHHHHHhcC-CCCCCEEEE
Confidence            3466788887775321  132 367888 8 9988   776432  2332 2333444444444444333 245789999


Q ss_pred             cCCHHHHHHHHHHHhc---C----------C-CCEEEEcCCCCcchHHHHHh-c--------Cc-----eEEEeecCCCC
Q 022213          113 TLGCKQAVEVILSVLA---R----------P-GANVLLPRPGWPYYEGIAQR-K--------QV-----EVRHFDLLPER  164 (301)
Q Consensus       113 t~g~~~al~~~~~~l~---~----------~-gd~Vl~~~p~~~~~~~~~~~-~--------g~-----~~~~~~~~~~~  164 (301)
                      |+|+++|++.+++.+.   .          + ||+|++.+|+|+++...... .        +.     ++..++.+...
T Consensus       125 ~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  204 (449)
T 2cjg_A          125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG  204 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred             eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence            9999999999998653   2          2 89999999999875432211 1        22     34444442100


Q ss_pred             CC--------CCCHHHHHhhcc---cCccEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          165 NW--------EVDLDAVEALAD---KNTAAMVIINPGNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       165 ~~--------~~~~~~l~~~~~---~~~~~v~l~~p~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      ..        ..+++.|++.++   ++++++++..++||+| ...+.+++++|.++|++||+++|+||+|..+.+.+. .
T Consensus       205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~  283 (449)
T 2cjg_A          205 LDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-A  283 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-S
T ss_pred             hhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-c
Confidence            11        134566888774   3455554444468999 589999999999999999999999999998766553 2


Q ss_pred             CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ..+..++...+++   ++||.+     |+||+++++
T Consensus       284 ~~~~~~~~~~di~---t~sK~l-----~iG~~~~~~  311 (449)
T 2cjg_A          284 WAYQQLDVAPDIV---AFGKKT-----QVCGVMAGR  311 (449)
T ss_dssp             STHHHHTCCCSEE---EECGGG-----SSEEEEECG
T ss_pred             eeecccCCCceEE---EecCcc-----cEEEEEECH
Confidence            2222222223333   789996     799999854

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.80  E-value=3.2e-18  Score=160.75  Aligned_cols=181  Identities=11%  Similarity=0.006  Sum_probs=138.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-------C-CCC------EEEEcCCCCcch
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-------R-PGA------NVLLPRPGWPYY  144 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-------~-~gd------~Vl~~~p~~~~~  144 (301)
                      .|....+..++++++.+++.+..|  .+.+++++|+|+|+|+..++.++.       + +||      +|+++.+.|+++
T Consensus       139 ~~~~s~~~~~le~~~~~~la~l~g--~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~  216 (515)
T 2jis_A          139 TYEIAPVFVLMEEEVLRKLRALVG--WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI  216 (515)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHT--CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             chhhchHHHHHHHHHHHHHHHHhC--CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence            566555656666666666655545  346789999999999999888874       2 576      899999999999


Q ss_pred             HHHHHhcCc---eEEEeecCCCCCCCCCHHHHHhhccc------CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCe
Q 022213          145 EGIAQRKQV---EVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVM  215 (301)
Q Consensus       145 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~  215 (301)
                      ...++..|.   +++.++++  .++.+|++.|++.+++      ++++|++++|+|+||.+.+   +++|+++|+++|++
T Consensus       217 ~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~~  291 (515)
T 2jis_A          217 QKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHGLW  291 (515)
T ss_dssp             HHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCE
T ss_pred             HHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCCe
Confidence            888888888   88888874  3567999999998865      4788999999999999998   88999999999999


Q ss_pred             EEEccCCcccccCCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          216 VVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       216 ii~D~~y~~~~~~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +++|++|+.+.+....+. .+..+.  .-.+++.|++|+++.| .++|++++++.
T Consensus       292 l~vD~a~~~~~~~~~~~~~~~~g~~--~aD~v~~s~hK~l~~p-~g~G~l~~~~~  343 (515)
T 2jis_A          292 LHVDAAWGGSVLLSQTHRHLLDGIQ--RADSVAWNPHKLLAAG-LQCSALLLQDT  343 (515)
T ss_dssp             EEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESCC
T ss_pred             EEEehhhhhHHHhChhhHhhcCCCc--cCCEEEECcccccCCC-CCeeEEEEeCh
Confidence            999999998776432221 122111  1127888999997755 57999998664

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.79  E-value=7.4e-19  Score=159.58  Aligned_cols=209  Identities=11%  Similarity=0.069  Sum_probs=138.1

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC------CCCCHHHH----HHHHHHHhhhCCCCCCCCCEE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT------NSGIPPAR----RAIADYLSRDLPYKLSADDVY  111 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~g~~~lr----~~ia~~l~~~~~~~~~~~~i~  111 (301)
                      ..+++++.++|     +  ++.+.+++.+++.+.....|+.      .....+++    +.+++++    +  .+++.++
T Consensus        24 ~~~~~~~~~~~-----~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~----g--~~~~~i~   90 (405)
T 2vi8_A           24 AKIELIASENF-----V--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF----G--AEHANVQ   90 (405)
T ss_dssp             HSEECCTTCCC-----C--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----T--CSEEECC
T ss_pred             cceeeccCccc-----C--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCceEEE
Confidence            45777765553     2  6888899888774221111211      11123454    4666666    2  3444444


Q ss_pred             EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH-H--HHhcC--ceEEEeecCCCCCCCCCHHHHHhhccc-CccEEE
Q 022213          112 VTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG-I--AQRKQ--VEVRHFDLLPERNWEVDLDAVEALADK-NTAAMV  185 (301)
Q Consensus       112 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~-~--~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~  185 (301)
                      +++| ++++..++.+++++||+|+++.|+|..+.. .  +...|  .+++.+++++ .++.+|++.+++.+++ ++++++
T Consensus        91 ~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~  168 (405)
T 2vi8_A           91 PHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIV  168 (405)
T ss_dssp             CSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEE
T ss_pred             ecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEE
Confidence            5555 999999999999999999999999987643 1  12333  3677776542 3567999999999876 788777


Q ss_pred             EcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc-CCCCCCCccccCCCCCEEEEecCcccCC-CCcceeEE
Q 022213          186 IINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWL-VPGWRFGW  263 (301)
Q Consensus       186 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~rvG~  263 (301)
                      + +|+|. |...+   +++|.++|++||+++|+|++|..... .+.....   +. ..+ ++++|+||+++ .+|   ||
T Consensus       169 ~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~~-~~d-i~~~s~sK~~~g~~g---G~  235 (405)
T 2vi8_A          169 A-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---VP-YAH-FVTTTTHKTLRGPRG---GM  235 (405)
T ss_dssp             E-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---TT-TCS-EEEEESSSTTCCCSC---EE
T ss_pred             E-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCCCc---cc-cCC-EEEEeccccCCCCCC---eE
Confidence            6 55553 45556   88999999999999999999995332 2211111   11 112 88999999987 556   99


Q ss_pred             EEeeCCCCcccchhHHHHHHhhh
Q 022213          264 LVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ++++.        +++++++...
T Consensus       236 ~~~~~--------~~~~~l~~~~  250 (405)
T 2vi8_A          236 ILCQE--------QFAKQIDKAI  250 (405)
T ss_dssp             EEECH--------HHHHHHHHHH
T ss_pred             EEEcH--------HHHHHHHhhh
Confidence            99842        4777776653

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.76  E-value=1.4e-18  Score=157.81  Aligned_cols=195  Identities=9%  Similarity=0.002  Sum_probs=122.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE-cCCHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYV-TLGCKQ  118 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-t~g~~~  118 (301)
                      .+.+++|+.|.      .++|+.+.+++.+..... ....+.+  ...++.+++.+.+.+.+|.. ++++|++ |+|+++
T Consensus        38 ~~~~~~~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~  108 (398)
T 2fyf_A           38 KPRDGRFGSGP------SKVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATA  108 (398)
T ss_dssp             SCSSCBCCSSS------CCCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHH
T ss_pred             ccCCccccCCC------CCCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhH
Confidence            34567777553      356678888776521110 1112222  11223344444444434433 3468998 999999


Q ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcc-hHHHHHhc--CceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCccc
Q 022213          119 AVEVILSVLARPGANVLLPRPGWPY-YEGIAQRK--QVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGN  195 (301)
Q Consensus       119 al~~~~~~l~~~gd~Vl~~~p~~~~-~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  195 (301)
                      +++.++++++++| .+.+..+.|.. ....+...  |.+++.++++  .++..+.     .+++++++|++++|+||||.
T Consensus       109 al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~  180 (398)
T 2fyf_A          109 FWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGV  180 (398)
T ss_dssp             HHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTE
T ss_pred             HHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcce
Confidence            9999999999887 22233333321 12234555  7888888875  2333332     24567899999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          196 VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       196 ~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +++.+++.++      +|+++|+|++|..+..    +..+..     ..+++.|+||.++.+| ++||+++++
T Consensus       181 ~~~~~~i~~~------~~~~vivD~a~~~~~~----~~~~~~-----~di~~~s~sK~~~~~g-g~g~l~~~~  237 (398)
T 2fyf_A          181 AVAVRRPEGS------DDALVVIDATSGAGGL----PVDIAE-----TDAYYFAPQKNFASDG-GLWLAIMSP  237 (398)
T ss_dssp             ECCCCCCTTC------C-CEEEEECTTTTTTS----CCCGGG-----CSEEEECTTSTTCSCS-SEEEEEECH
T ss_pred             ecchHHhhhh------cCCeEEEEeccccCCc----ccCccc-----CcEEEEecCcccCCCC-ceEEEEECH
Confidence            9996555544      7999999999987442    112221     2278999999998886 699998843

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.63  E-value=3.6e-20  Score=171.14  Aligned_cols=230  Identities=16%  Similarity=0.046  Sum_probs=151.0

Q ss_pred             cCCCCCeeeccCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCF-RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+|||..|....  .+ ..++.+.+++.+++.......|.. ....+|.+.+++++      + ..+.+++++|+
T Consensus        96 D~dG~~yiD~~~~~~~~--~lGh~~p~V~~Av~~q~~~~~~~~~~~-~~~~~Lae~L~~~~------p-~~~~v~~~nSG  165 (465)
T 2yky_A           96 DVDGHAYVNFLGEYTAG--LFGHSHPVIRAAVERALAVGLNLSTQT-ENEALFAEAVCDRF------P-SIDLVRFTNSG  165 (465)
Confidence            34688899998885321  12 246788899988887543323433 33456666666665      1 35789999999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHH----hcCc--eEEEeecCCCCCCCCCHHHHHhhcc---cCccEEE
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQ----RKQV--EVRHFDLLPERNWEVDLDAVEALAD---KNTAAMV  185 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~----~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~  185 (301)
                      ++|++.+++...  ..+|+|++.+++|+++.....    ..|+  .+..++.       .|++.|++.++   +++++++
T Consensus       166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi  238 (465)
T 2yky_A          166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAIL  238 (465)
Confidence            999999998764  345999999999987643322    1222  1222221       37888888887   4566666


Q ss_pred             EcCCCCCcccCC-CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          186 IINPGNPCGNVF-TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       186 l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      +...++++|.+. +.+.+++|.++|++||+++|+||+|. +..+ . ......++..   .-+.+|||.++. |+|+||+
T Consensus       239 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~-~~a~~~~gv~---pDi~t~sK~lg~-G~piG~v  311 (465)
T 2yky_A          239 VEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-G-GGAQEMLGIS---ADLTTLGKYIGG-GMSFGAF  311 (465)
Confidence            544356699655 57889999999999999999999999 6332 1 1122222211   234489999886 9999999


Q ss_pred             EeeCCCCcccchhHHHHHHh-----h-hcccCCCccccccc
Q 022213          265 VTNDPNGIFQKSGIIDSIKD-----C-LSIYSDIPTFIQVC  299 (301)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~q~~  299 (301)
                      +++.        ++++.+..     . .....+.++++|.+
T Consensus       312 ~~~~--------~i~~~l~~~~~g~~~~~~T~~~npla~aA  344 (465)
T 2yky_A          312 GGRR--------DLMERFDPARDGAFAHAGTFNNNILTMSA  344 (465)
Confidence            9854        36666554     1 11233556666654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.76  E-value=1e-18  Score=161.74  Aligned_cols=173  Identities=13%  Similarity=0.065  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH-HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCK-QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~-~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-  162 (301)
                      .++.+++.+++.+.+|.  +++ +++|+|+| .++..++.++..  +|+.|+++.+.|..+...++..|++++.+++.+ 
T Consensus       132 ~~~~~~~~~~la~~~g~--~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~  208 (456)
T 2z67_A          132 YALTNKILESFFKQLGL--NVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLD  208 (456)
T ss_dssp             HHHHHHHHHHHHHHTTC--CCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHHHHHcCC--CCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEecc
Confidence            44555556666555553  344 99999999 456556666544  678899999999999999999999999988643 


Q ss_pred             CCCCCCCHHHHHhhc-c----cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc
Q 022213          163 ERNWEVDLDAVEALA-D----KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL  237 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~-~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~  237 (301)
                      ++++.+|+++|++.+ +    .++.++++++|+||||.+.+   +++|+++|+++|+++++|++|+.+.++. .+.....
T Consensus       209 ~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~-~~~~~~~  284 (456)
T 2z67_A          209 GDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY-LEKLKKA  284 (456)
T ss_dssp             TTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH-HHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh-hHHHHHh
Confidence            345679999999988 4    35666778999999999998   8888899999999999999998765421 0001111


Q ss_pred             cCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          238 FGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +....+ +++.|++|.+ +.+.++||+++++
T Consensus       285 ~~~~~D-~~~~s~hK~~-~~p~g~G~l~~~~  313 (456)
T 2z67_A          285 FKYRVD-AVVSSSDKNL-LTPIGGGLVYSTD  313 (456)
T ss_dssp             HTSCCS-EEEEEHHHHH-CCCSSCEEEEESC
T ss_pred             hCCCCC-EEEEcCCCCc-CCCCCeEEEEEcC
Confidence            111112 6778999974 4568999999844

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=149.27  Aligned_cols=199  Identities=11%  Similarity=0.060  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC--------CCEEEcCCHHHHHHHHHHHhcC---
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA--------DDVYVTLGCKQAVEVILSVLAR---  129 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~--------~~i~~t~g~~~al~~~~~~l~~---  129 (301)
                      |..+.+.+...++. ....|....+..++++++++|+.+.+|.+...        ...++|+|+|+++..++.+..+   
T Consensus        92 ~~~~~~~~~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~  170 (481)
T 4e1o_A           92 PSLLGDMLADAINC-LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKI  170 (481)
T ss_dssp             HHHHHHHHHHHHCC-CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHH
Confidence            44556666666654 34468777788999999999998876654221        3679999999999888887643   


Q ss_pred             ----------------CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC------ccEEEEc
Q 022213          130 ----------------PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN------TAAMVII  187 (301)
Q Consensus       130 ----------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~  187 (301)
                                      +++.|+++.+.|.++...+...|.+++.++++  .++.+|++.|++++++.      +..++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~  248 (481)
T 4e1o_A          171 LEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCAT  248 (481)
T ss_dssp             HHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence                            56799999999999988888889999999874  45679999999998653      5667888


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCc-cccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM-GLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~-~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      .++|+||.+-+   +++|+++|++||+++++|++|+...+........ ..+. ..+ .+..+++|+++.| ..+|++++
T Consensus       249 ~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~-~aD-si~~~~hK~l~~p-~g~g~l~~  322 (481)
T 4e1o_A          249 LGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE-YAD-SFTFNPSKWMMVH-FDCTGFWV  322 (481)
T ss_dssp             BSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG-GCS-EEEECHHHHSSCC-SSCEEEEE
T ss_pred             cCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc-cCC-EEEEChHHhcCCC-CceEEEEE
Confidence            99999999987   8899999999999999999998764322111111 1111 112 5567999997776 56788877


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      .+
T Consensus       323 ~~  324 (481)
T 4e1o_A          323 KD  324 (481)
T ss_dssp             SB
T ss_pred             eC
Confidence            55

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.73  E-value=7.9e-17  Score=157.16  Aligned_cols=170  Identities=12%  Similarity=0.058  Sum_probs=129.4

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN  165 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  165 (301)
                      +.++++.+++++.      .+ +.+++++|+++++..++.+++++||+|+++.++|.++...+...|+++++++...+ .
T Consensus       207 v~~~ee~la~l~G------~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~  278 (755)
T 2vyc_A          207 FGESEKYAARVFG------AD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-R  278 (755)
T ss_dssp             HHHHHHHHHHHHT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-T
T ss_pred             HHHHHHHHHHHhC------CC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-c
Confidence            4577788887772      22 45888999999999999999999999999999999988888889999999887532 2


Q ss_pred             CC----C-----CHHHHHhhccc--Ccc--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccc-
Q 022213          166 WE----V-----DLDAVEALADK--NTA--------AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHL-  225 (301)
Q Consensus       166 ~~----~-----~~~~l~~~~~~--~~~--------~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~-  225 (301)
                      ++    +     |++.+++++++  +++        ++++++| ||+|.+.+   +++|+++|++|++++++|++|... 
T Consensus       279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~  354 (755)
T 2vyc_A          279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYA  354 (755)
T ss_dssp             TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred             cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhc
Confidence            32    4     89999998854  333        8888998 79999998   889999999999999999999854 


Q ss_pred             ccCCC--CCCCccc--cC-CCCCEEEEecCcccCCCCcce-eEEEEeeCC
Q 022213          226 TFGSI--PYTPMGL--FG-SIVPVITLGSISKRWLVPGWR-FGWLVTNDP  269 (301)
Q Consensus       226 ~~~~~--~~~~~~~--~~-~~~~vi~~~s~SK~~~~~G~r-vG~~~~~~~  269 (301)
                      .+.+.  ...++..  .+ ...++|++.|+||+  ++|.+ .|++++++.
T Consensus       355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~--L~g~~~g~~i~~~~~  402 (755)
T 2vyc_A          355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKL--LNALSQASYIHVREG  402 (755)
T ss_dssp             GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTS--SSCCTTCEEEEEECC
T ss_pred             ccCcccCCcchhcCCcCCccCCCeEEEECcccc--ccCcCCeeeeeecCc
Confidence            23321  1222211  12 23467899999998  45666 566666553

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.72  E-value=1.3e-17  Score=161.58  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=128.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH-HHhcCceEEEeecCCC
Q 022213           85 GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI-AQRKQVEVRHFDLLPE  163 (301)
Q Consensus        85 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~  163 (301)
                      -+.++++.+|+++.      .+ ..+++++|+++++..++.+++++||+|+++.++|.++... +...|+++++++....
T Consensus       174 ~i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~  246 (730)
T 1c4k_A          174 PAVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  246 (730)
T ss_dssp             HHHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence            35789999999882      33 3488899999999999999999999999999999988777 7888999988876432


Q ss_pred             CCCC----CCHHHH-----HhhcccC------c----cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc
Q 022213          164 RNWE----VDLDAV-----EALADKN------T----AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH  224 (301)
Q Consensus       164 ~~~~----~~~~~l-----~~~~~~~------~----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~  224 (301)
                       .|+    +|++.|     +++++++      +    +++++++| ||+|.+.+   +++|+++|+++++++++|++|..
T Consensus       247 -~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~  321 (730)
T 1c4k_A          247 -PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG  321 (730)
T ss_dssp             -TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred             -ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccccc
Confidence             233    678887     8888765      4    78899998 58999998   88999999999999999999975


Q ss_pred             c-ccCCCC--CCCcc--ccCC-CCCEEEEecCcccCCCCcceeE-EEEeeC
Q 022213          225 L-TFGSIP--YTPMG--LFGS-IVPVITLGSISKRWLVPGWRFG-WLVTND  268 (301)
Q Consensus       225 ~-~~~~~~--~~~~~--~~~~-~~~vi~~~s~SK~~~~~G~rvG-~~~~~~  268 (301)
                      . .|.+..  ..++.  .++. +.++++++|+||+  ++|.+.| ++++++
T Consensus       322 ~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~--L~g~~~gg~I~v~~  370 (730)
T 1c4k_A          322 YEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ--QAGFSQTSQIHKKD  370 (730)
T ss_dssp             GGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH--SSCCTTCEEEEEEC
T ss_pred             ccccCcccCCcCcccccccCCCCCCEEEEECCCCC--CCCCCCEEEEEecc
Confidence            3 343211  11221  1122 3467999999998  4566654 554544

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.71  E-value=1.5e-16  Score=143.59  Aligned_cols=168  Identities=14%  Similarity=0.181  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH--HHHHhcCc--eEEEeecCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE--GIAQRKQV--EVRHFDLLPE  163 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~--~~~~~~~~~~  163 (301)
                      ++++++++.+.+.++  .+ +.+++|+|+|++++.++..+ ++||+|++++++|+++.  ..++..|.  +++.++....
T Consensus        35 ~~~~~~~~~l~~~~~--~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  110 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYN--AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERT  110 (379)
T ss_dssp             HHHHHHHHHHHHHHT--CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEES
T ss_pred             HHHHHHHHHHHHHhC--CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccc
Confidence            344444444444333  23 68899999999999988655 69999999999998643  34555564  6777765321


Q ss_pred             ------CC-CCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCc
Q 022213          164 ------RN-WEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM  235 (301)
Q Consensus       164 ------~~-~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~  235 (301)
                            .. ..+|++++++.++ .+++++++++++||||.+++.+++++|.++|++||+++|+|+++. .   . .+..+
T Consensus       111 g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~-~~~~~  185 (379)
T 3ke3_A          111 EDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---C-VWLDM  185 (379)
T ss_dssp             SCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---T-CCCCH
T ss_pred             ccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---C-ccccc
Confidence                  11 1489999999885 478999999999999999999999999999999999999999975 1   1 22223


Q ss_pred             cccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          236 GLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       236 ~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ..++-   .+++.|++|+++.+ .++|+++++.
T Consensus       186 ~~~~~---d~~~~s~~K~l~~~-~g~g~~~~~~  214 (379)
T 3ke3_A          186 KELGI---DVLISAPQKGWSST-PCAGLVMLSA  214 (379)
T ss_dssp             HHHTC---SEEEECTTTTTCSC-CCEEEEEECH
T ss_pred             cccCC---CEEEecchhhcCCC-CceEEEEECH
Confidence            22222   27888999987653 4589998743

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.71  E-value=9.1e-17  Score=149.24  Aligned_cols=206  Identities=11%  Similarity=0.043  Sum_probs=124.4

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC------CCCCHHHHHHHHHHHhhhCCCCCCCCC---EEEc
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT------NSGIPPARRAIADYLSRDLPYKLSADD---VYVT  113 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~---i~~t  113 (301)
                      ..|.|-.++ +     .+++.|.+++.+.+.+.-...|+.      .....++++...+.+.+.+|  .+.+.   .+++
T Consensus        55 ~~i~lias~-n-----~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g--~~~~~~~~~v~~  126 (490)
T 2a7v_A           55 RGLELIASE-N-----FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQP  126 (490)
T ss_dssp             HSEECCTTC-C-----CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECCC
T ss_pred             cCceEECCC-C-----CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcC--CCcccCceEEeC
Confidence            567776543 2     257889999888775422112221      11234666333344444344  34432   3556


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH---H-----HHHhcCceE--EEeecCCCCCCCCCHHHHHhhccc-Ccc
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYE---G-----IAQRKQVEV--RHFDLLPERNWEVDLDAVEALADK-NTA  182 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~---~-----~~~~~g~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~  182 (301)
                      +++++|+..++.++++|||+|+++.+.|.++.   .     .+...|..+  +.+++++ .++.+|++++++.+.+ +++
T Consensus       127 ~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~k  205 (490)
T 2a7v_A          127 YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPR  205 (490)
T ss_dssp             SSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCS
T ss_pred             CchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCc
Confidence            68899999999999999999999999886532   1     223445433  3444433 3467999999998863 688


Q ss_pred             EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          183 AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       183 ~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      +++++.++||+  ..+   +++|.++|++||+++++|+++. .+.+.+..+.++. . -   -+++.|+||++  .|.|.
T Consensus       206 lIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~-a---Div~~S~hK~l--~Gp~G  273 (490)
T 2a7v_A          206 LIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-H-A---DIVTTTTHKTL--RGARS  273 (490)
T ss_dssp             EEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-T-C---SEEEEESSGGG--CSCSC
T ss_pred             EEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-C-C---CEEEECCcccC--ccccc
Confidence            88888888875  455   8899999999999999999965 4444443333332 1 1   18889999986  46678


Q ss_pred             EEEEeeCC
Q 022213          262 GWLVTNDP  269 (301)
Q Consensus       262 G~~~~~~~  269 (301)
                      |++++++.
T Consensus       274 G~i~~~~~  281 (490)
T 2a7v_A          274 GLIFYRKG  281 (490)
T ss_dssp             EEEEEECS
T ss_pred             hheeeccc
Confidence            99998763

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.70  E-value=3e-16  Score=144.37  Aligned_cols=191  Identities=22%  Similarity=0.286  Sum_probs=124.0

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHH--HHHHhcCCCCCCCC--CCCC----HHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAI--VDAVRSGKFNCYAT--NSGI----PPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~--~~~~~~~~~~~Y~~--~~g~----~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      +..++.|.|+    ...|+.+.+.+  .....  .+..|.+  .+|.    .++++.+++++    |  .+++++++++|
T Consensus        66 ~~~~~~g~~~----~~~p~~v~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~la~~~----g--~~~~~i~~~~g  133 (438)
T 1wyu_A           66 KAFLGGGVRS----HHVPPVVQALAARGEFLT--AYTPYQPEVSQGVLQATFEYQTMIAELA----G--LEIANASMYDG  133 (438)
T ss_dssp             TCCCCSSCCC----CCCCHHHHHHHTSHHHHH--CCSCCSGGGCHHHHHHHHHHHHHHHHHH----T--SSEECSCBSSH
T ss_pred             ccccCCCccC----CcCcHHHHHHHhcchhhh--cCCCCcchhhhhHHHHHHHHHHHHHHHh----C--CCccceEEeCc
Confidence            4566677653    45566664443  22222  1122321  3343    35555566655    3  46678999999


Q ss_pred             HHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          116 CKQAVEVILSVL-ARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       116 ~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      ++.+.+.+..++ .++||+|+++.+.|+.+...+    +..|++++.++.   .++.+|+++    +++++++|++++| 
T Consensus       134 ~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~---~~~~~d~~~----i~~~t~~v~i~~p-  205 (438)
T 1wyu_A          134 ATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL---EGGRTPLPE----VGEEVGAVVVQNP-  205 (438)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC---BTTBCCCCC----CCTTEEEEEEESS-
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC---cCCccCHHH----hCCCeEEEEEECC-
Confidence            994444443332 478999999999999886544    458999999986   234577665    5667899999999 


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccC---CcccccCCCCCCCccccCCCCCEEEEecCcccCC----CCcceeEE
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEV---YGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL----VPGWRFGW  263 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~---y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~----~~G~rvG~  263 (301)
                      ||||.+.+   +++|+++|+++|+++|+|..   +..+      ..+ ..++.  + +++.| +|.|+    +.|.|+||
T Consensus       206 n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~------~~~-~~~g~--D-~~~~s-~kk~~~~~~~~Gp~~G~  271 (438)
T 1wyu_A          206 NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL------KPP-GAYGA--D-IAVGD-GQSLGLPMGFGGPHFGF  271 (438)
T ss_dssp             CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB------CCH-HHHTC--S-EEEEE-CTTTTCCCGGGCSCCEE
T ss_pred             CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc------CCC-ccCCC--C-EEEEC-CcccCCCccCCCCCeeE
Confidence            99999998   88999999999999996632   3221      111 22222  2 55666 66554    45679999


Q ss_pred             EEeeC
Q 022213          264 LVTND  268 (301)
Q Consensus       264 ~~~~~  268 (301)
                      ++++.
T Consensus       272 l~~~~  276 (438)
T 1wyu_A          272 LATKK  276 (438)
T ss_dssp             EEECG
T ss_pred             EEEcH
Confidence            99854

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.69  E-value=5e-16  Score=144.40  Aligned_cols=198  Identities=13%  Similarity=0.034  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-------CCEEEcCCHHHHHHHHHHHhcC-----
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSA-------DDVYVTLGCKQAVEVILSVLAR-----  129 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-------~~i~~t~g~~~al~~~~~~l~~-----  129 (301)
                      ..+.+.+...++. ....|....+..++++++.+|+.+.+|.+...       ...++|+|+|+++..++.+..+     
T Consensus        88 ~~~~~~l~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~  166 (475)
T 3k40_A           88 AIVADMLSGAIAC-IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE  166 (475)
T ss_dssp             HHHHHHHHHHHCC-CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCc-cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence            4455556665543 33467776788899999999999877754221       3689999999999888877632     


Q ss_pred             --------------CCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC------ccEEEEcCC
Q 022213          130 --------------PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN------TAAMVIINP  189 (301)
Q Consensus       130 --------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p  189 (301)
                                    +++.|+++...|.++...++..|++++.++++  .++ +|+++|++.+++.      +..++++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~  243 (475)
T 3k40_A          167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG  243 (475)
T ss_dssp             HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred             hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence                          34689999999999999999999999999875  345 9999999998653      456788899


Q ss_pred             CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          190 GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       190 ~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      +|+||.+.+   +++|+++|++||+++++|++|+...+....... +..+. .. -.+..+++|+++.| ..+|++++.+
T Consensus       244 ~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~-~~-Ds~~~~~hK~l~~p-~g~g~l~~~~  317 (475)
T 3k40_A          244 TTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE-SA-DSFNFNPHKWMLVN-FDCSAMWLKD  317 (475)
T ss_dssp             CTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG-GC-SEEEECHHHHSSCC-SSCEEEEESS
T ss_pred             CCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc-cC-CEEEECchhccCCC-CceEEEEEeC
Confidence            999999988   889999999999999999999875432111111 11111 11 16678999986655 5688888866


Q ss_pred             C
Q 022213          269 P  269 (301)
Q Consensus       269 ~  269 (301)
                      .
T Consensus       318 ~  318 (475)
T 3k40_A          318 P  318 (475)
T ss_dssp             G
T ss_pred             H
Confidence            4

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.68  E-value=5e-16  Score=144.29  Aligned_cols=214  Identities=12%  Similarity=0.047  Sum_probs=141.3

Q ss_pred             CCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           39 NDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSG---KFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      .+++.+|||..|.....  ++ .++.+.+++.+++...   ....|+. ....++++.+++.+.+..+  ...++|++++
T Consensus        60 ~dG~~ylD~~~g~~~~~--lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~  134 (472)
T 1ohv_A           60 VDGNRMLDLYSQISSIP--IGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMA  134 (472)
T ss_dssp             TTSCEEEESSHHHHTCS--SCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEES
T ss_pred             CCCCEEEECCCCHhhcc--cCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeC
Confidence            45778999988864321  22 4788889988765321   1123443 2457899999997766443  2567999999


Q ss_pred             CHHHHHHHHHHHhc-------C------------------CC---CEEEEcCCCCcchHHHHH-hcCce--------E--
Q 022213          115 GCKQAVEVILSVLA-------R------------------PG---ANVLLPRPGWPYYEGIAQ-RKQVE--------V--  155 (301)
Q Consensus       115 g~~~al~~~~~~l~-------~------------------~g---d~Vl~~~p~~~~~~~~~~-~~g~~--------~--  155 (301)
                      |+++|++.+++.+.       .                  +|   ++|++.+++|+++..... ..|..        .  
T Consensus       135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~  214 (472)
T 1ohv_A          135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD  214 (472)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred             CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence            99999999998873       1                  46   899999999998644332 22221        0  


Q ss_pred             -EEeecCCCC-----C--C-----CCCHHHHHhhccc------CccEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCe
Q 022213          156 -RHFDLLPER-----N--W-----EVDLDAVEALADK------NTAAMVIINPGNPCGN-VFTYHHLQEIAEMARKLRVM  215 (301)
Q Consensus       156 -~~~~~~~~~-----~--~-----~~~~~~l~~~~~~------~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~  215 (301)
                       ..+++....     .  +     ..|++.|++.+++      ++++|++...+|++|. ..+.+.+++|.++|++||++
T Consensus       215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l  294 (472)
T 1ohv_A          215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA  294 (472)
T ss_dssp             CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred             CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence             111221000     0  0     1257888888865      5666766666888997 56799999999999999999


Q ss_pred             EEEccCCcccccCCCCCCCccccCCC--CCEEEEecCcccCCCCcceeEEEE
Q 022213          216 VVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       216 ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +|+||+|..+.+.+. ...+..++-.  .+   +.||||.+ +.|   ||++
T Consensus       295 li~DEv~~g~g~~g~-~~~~~~~gv~~~~D---i~t~sK~~-l~G---G~~~  338 (472)
T 1ohv_A          295 FLVDEVQTGGGSTGK-FWAHEHWGLDDPAD---VMTFSKKM-MTG---GFFH  338 (472)
T ss_dssp             EEEECTTTTTTTTSS-SSGGGGGCCSSCCS---EEEECGGG-SSE---EEEE
T ss_pred             EEEeCcccCCCCCCC-chhccccCCCCCCC---EEEEcccc-ccC---CccC
Confidence            999999987655442 2233333211  22   34899995 445   7776

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.67  E-value=6.8e-16  Score=148.59  Aligned_cols=167  Identities=14%  Similarity=0.115  Sum_probs=125.2

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERN  165 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  165 (301)
                      +.++++.+|+++..       ...+++++|++.|+..++.+++++||+|+++.++|.++...+...|+++++++... +.
T Consensus       197 i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~~  268 (715)
T 3n75_A          197 HKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-NA  268 (715)
T ss_dssp             HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-CT
T ss_pred             HHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-cc
Confidence            57899999999832       23567788888999999999999999999999999999999999999999998653 23


Q ss_pred             CCC---------CHHHHHhhcccC--cc---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc-cCCC
Q 022213          166 WEV---------DLDAVEALADKN--TA---AMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT-FGSI  230 (301)
Q Consensus       166 ~~~---------~~~~l~~~~~~~--~~---~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~  230 (301)
                      +++         |++.++++++++  ++   ++++++| |++|.+.+   +++|+++|++++  +++|++|+... |.+ 
T Consensus       269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~~-  341 (715)
T 3n75_A          269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSP-  341 (715)
T ss_dssp             TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGSG-
T ss_pred             cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccCC-
Confidence            443         899999988642  33   7899999 99999999   677777777663  79999998653 432 


Q ss_pred             CCCCccccCC---CCC-EEEEecCcccCCCCcc-eeEEEEeeCC
Q 022213          231 PYTPMGLFGS---IVP-VITLGSISKRWLVPGW-RFGWLVTNDP  269 (301)
Q Consensus       231 ~~~~~~~~~~---~~~-vi~~~s~SK~~~~~G~-rvG~~~~~~~  269 (301)
                      ..........   .+. +++++|+||+++  |+ ..|++.+++.
T Consensus       342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~  383 (715)
T 3n75_A          342 IYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGD  383 (715)
T ss_dssp             GGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred             ccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence            1111111111   122 367999999954  44 3588888664

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.50  E-value=3.3e-14  Score=128.34  Aligned_cols=194  Identities=12%  Similarity=0.016  Sum_probs=132.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--------CCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCC-CCEE
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--------FNCYAT--NSGIPPARRAIADYLSRDLPYKLSA-DDVY  111 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--------~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~  111 (301)
                      +++.++.| |     -+.|+.|.+++.+.+.+..        ....+.  ..-+.+.|+.+++++      +++. ++|+
T Consensus        27 ~~yl~~ag-p-----t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll------~~~~~~evi   94 (386)
T 3qm2_A           27 QVFNFSSG-P-----AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL------NIPSNYKVL   94 (386)
T ss_dssp             CCEECCSS-S-----CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH------TCCTTEEEE
T ss_pred             cCccccCC-C-----CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh------CCCCCceEE
Confidence            45555544 3     3567888888876553210        111111  235788999999999      4433 4688


Q ss_pred             E-cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecC-CCCCCCCCHHHHHhhcccCccEEEEc
Q 022213          112 V-TLGCKQAVEVILSVLARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLL-PERNWEVDLDAVEALADKNTAAMVII  187 (301)
Q Consensus       112 ~-t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~  187 (301)
                      + |+|+|+++++++..+.++||+|++..-++.+  +...++..| ++..++.+ ...+..++++.++..+++++++|.++
T Consensus        95 f~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~  173 (386)
T 3qm2_A           95 FCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYC  173 (386)
T ss_dssp             EEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEEC
T ss_pred             EEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEE
Confidence            8 6899999999999999999998755444433  334456678 88888764 12333367778888888889999889


Q ss_pred             CCCCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          188 NPGNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       188 ~p~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      +..|.||+. .+   +++|.     +|+++++|.+++.    +..+..+..++     +.+.|..|.+|-+|  +|++++
T Consensus       174 h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~----g~~pidv~~~~-----~~~~s~hK~lGP~G--~g~l~v  234 (386)
T 3qm2_A          174 PNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI----LSAPLDVSRYG-----VIYAGAQKNIGPAG--LTLVIV  234 (386)
T ss_dssp             SEETTTTEECCC---CCCCC-----TTCCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCTT--EEEEEE
T ss_pred             CCcCCcCEecCc---hhhhc-----CCCEEEEEccccc----CCCCCCccccC-----EEEEecccccCCCc--cEEEEE
Confidence            888999996 77   55553     7999999999986    33444455443     46689999987666  788877


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      +.
T Consensus       235 ~~  236 (386)
T 3qm2_A          235 RE  236 (386)
T ss_dssp             EG
T ss_pred             CH
Confidence            65

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.49  E-value=7.9e-14  Score=125.33  Aligned_cols=186  Identities=11%  Similarity=-0.004  Sum_probs=131.2

Q ss_pred             CCCChHHHHHHHHHHHhcCC-----C---CCCCC--CCCCHHHHHHHHHHHhhhCCCCCCC-CCEEE-cCCHHHHHHHHH
Q 022213           57 CFRTAVEAEDAIVDAVRSGK-----F---NCYAT--NSGIPPARRAIADYLSRDLPYKLSA-DDVYV-TLGCKQAVEVIL  124 (301)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-----~---~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~-t~g~~~al~~~~  124 (301)
                      ..+.|+.|.+++.+.+.+..     .   ...++  ..-+.+.|+.+++++      ++++ ++|++ |.|+|+++++++
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll------~~~~~~evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL------AVPDNYKVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH------TCCTTEEEEEESSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh------CCCCCCeEEEEcCchHHHHHHHH
Confidence            46788999999988775210     0   00110  011356777888888      3443 56888 589999999999


Q ss_pred             HHhcCC--CCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          125 SVLARP--GANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       125 ~~l~~~--gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..+..+  ||+|++..-++.+  +...++..|..++.++.+.  ++..+++.++..++++++.|.+++..|.||+.++. 
T Consensus        95 ~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-  171 (377)
T 3e77_A           95 LNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-  171 (377)
T ss_dssp             HHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-
T ss_pred             HhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCCCccEEEEeCccCchheEchh-
Confidence            999865  9999877665553  3345566787777666532  34466777777788889999999889999999994 


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                             +|+++|+++++|.+.+.    +..+..+..++     +++.|..|++|-+|  +|+++++..
T Consensus       172 -------i~~~~~~~~~vD~~q~~----g~~~id~~~~~-----~~~~s~~K~~gp~G--~g~l~~~~~  222 (377)
T 3e77_A          172 -------IPDVKGAVLVCDMSSNF----LSKPVDVSKFG-----VIFAGAQKNVGSAG--VTVVIVRDD  222 (377)
T ss_dssp             -------CCCCTTCCEEEECTTTT----TSSCCCGGGCS-----EEEEEGGGTTSCTT--CEEEEEETT
T ss_pred             -------hhccCCCEEEEEccccc----CCCCCchhhcC-----EEEEecccccCCCc--cEEEEEcHH
Confidence                   36789999999999986    33344444443     47789999997677  677777653

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.43  E-value=6.7e-13  Score=118.74  Aligned_cols=192  Identities=12%  Similarity=0.091  Sum_probs=129.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCC--CC-----CCCCHHHHHHHHHHHhhhCCCCCC-CCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCY--AT-----NSGIPPARRAIADYLSRDLPYKLS-ADD  109 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y--~~-----~~g~~~lr~~ia~~l~~~~~~~~~-~~~  109 (301)
                      .+++++|+.|-      -+.|+.|.+++.+.+....   ..-|  ..     ..-+.+.|+.+++++      +++ +++
T Consensus         3 ~~~~~~f~pgp------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll------~~~~~~~   70 (361)
T 3m5u_A            3 AMRKINFSAGP------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY------ELNDDYE   70 (361)
T ss_dssp             -CCCEECCSSS------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH------TCCTTEE
T ss_pred             ccceEeecCCC------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh------CCCCCce
Confidence            45778888773      3567899999988764210   0001  11     012456777888887      344 457


Q ss_pred             EEE-cCCHHHHHHHHHHHhcCCCCEEE-EcCCCCc-chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213          110 VYV-TLGCKQAVEVILSVLARPGANVL-LPRPGWP-YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       110 i~~-t~g~~~al~~~~~~l~~~gd~Vl-~~~p~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      |++ |+|+|+++++++..+. +||+++ +..-.|. .+...++..|.++..++.+....+..+++.  + ++++++.|.+
T Consensus        71 v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~  146 (361)
T 3m5u_A           71 VLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYI  146 (361)
T ss_dssp             EEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEE
T ss_pred             EEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEE
Confidence            887 9999999999999998 888763 2222332 234455678999999988654332234555  3 7788999999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++..|.||..++.        +++ +|+++++|.+.+..    ..+..+..++     +++.|..|.+|-+|  +|++++
T Consensus       147 ~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~g----~~~id~~~~d-----~~~~s~~K~~gp~G--~g~l~~  206 (361)
T 3m5u_A          147 CSNNTIYGTQYQN--------YPK-TKTPLIVDASSDFF----SRKVDFSNIA-----LFYGGVQKNAGISG--LSCIFI  206 (361)
T ss_dssp             ESEETTTTEECSS--------CCC-CSSCEEEECGGGTT----SSCCCCTTEE-----EEEEETTTTSSCTT--CEEEEE
T ss_pred             eCCCCCcceeCCc--------ccc-cCCEEEEEcccccC----CCCCCcccCC-----EEEEechhccCCCc--cEEEEE
Confidence            9888999998772        233 49999999999862    2333333321     78889999997666  777777


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      +.
T Consensus       207 ~~  208 (361)
T 3m5u_A          207 RK  208 (361)
T ss_dssp             EH
T ss_pred             cH
Confidence            43

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.22  E-value=1.9e-11  Score=111.43  Aligned_cols=175  Identities=12%  Similarity=0.035  Sum_probs=118.8

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC----CCEEEEcCCCCcchHHHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP----GANVLLPRPGWPYYEGIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~  161 (301)
                      ...+.+.+..++.+..|.+ +....++++|+|.+..+++.+.+++    ++.|+++.-+|.+....+...|+++++++..
T Consensus        96 ~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~  174 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV  174 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEee
Confidence            4456666666666655532 2234588888885555555555443    8999999999999999999999999998763


Q ss_pred             C-CCCCCCCHHHHHhhccc---CccEEEEcCCC-CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc
Q 022213          162 P-ERNWEVDLDAVEALADK---NTAAMVIINPG-NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG  236 (301)
Q Consensus       162 ~-~~~~~~~~~~l~~~~~~---~~~~v~l~~p~-nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  236 (301)
                      + ++...+|++.+++++++   ..+++++.+|+ +.+|.+-+   +++|+++|++||+++++|++|+.........+ -.
T Consensus       175 ~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~-~~  250 (450)
T 3bc8_A          175 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHLI-QQ  250 (450)
T ss_dssp             EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH-HH
T ss_pred             ecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhhhhHhHH-HH
Confidence            2 23567999999999965   24566666774 45677877   99999999999999999999996432110000 01


Q ss_pred             ccC-CCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          237 LFG-SIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       237 ~~~-~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      .+. ...+ .++.|++|++.. -...+++.+.
T Consensus       251 a~~~~~AD-~~v~S~HK~l~a-~~~~~~l~~r  280 (450)
T 3bc8_A          251 GARVGRID-AFVQSLDKNFMV-PVGGAIIAGF  280 (450)
T ss_dssp             HHHHSCCC-EEEEEHHHHHSC-CSSCEEEEES
T ss_pred             HhcccCCC-EEEECCccCCCc-hhccEEEEec
Confidence            110 0111 677899999544 3445666654

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.21  E-value=1.9e-11  Score=110.59  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=119.2

Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCC----CCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCC
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARP----GANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEV  168 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~  168 (301)
                      .+|++. .|++ .....++++|+|.++.+++.+.+++    ||+|+++.-+|.+....+...|+++++++... .+...+
T Consensus       123 ld~L~~-~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~i  200 (501)
T 3hl2_A          123 LDIIKL-AGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRT  200 (501)
T ss_dssp             HHHHHH-TTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEE
T ss_pred             HHHHHH-cCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCC
Confidence            345544 4544 2346899999998887777777763    49999999999999999999999999997632 234678


Q ss_pred             CHHHHHhhcccC---ccEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc-cCCCCCCCccccC-CCC
Q 022213          169 DLDAVEALADKN---TAAMVIINP-GNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT-FGSIPYTPMGLFG-SIV  242 (301)
Q Consensus       169 ~~~~l~~~~~~~---~~~v~l~~p-~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~-~~~~~~~~~~~~~-~~~  242 (301)
                      |++.+++++++.   ..++++.++ .|..+.+-+   +++|+++|++||+++++|++|+... +....+.....++ -+ 
T Consensus       201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD-  276 (501)
T 3hl2_A          201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID-  276 (501)
T ss_dssp             CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC-
T ss_pred             CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc-
Confidence            999999998752   334444444 454456666   9999999999999999999998744 1111111111222 12 


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                        +++.|..|.+.+| +. |.++....      +++++++..
T Consensus       277 --~vVqS~HK~llvp-IG-G~ii~~~d------~e~l~~~~~  308 (501)
T 3hl2_A          277 --AFVQSLDKNFMVP-VG-GAIIAGFN------DSFIQEISK  308 (501)
T ss_dssp             --EEEEEHHHHHCCC-SS-CEEEEESC------HHHHHHHHH
T ss_pred             --EEEecccccceee-cC-ceEEEeCC------HHHHHHHHH
Confidence              6888999997766 11 44443222      346666544

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.18  E-value=3.3e-10  Score=104.01  Aligned_cols=205  Identities=17%  Similarity=0.134  Sum_probs=129.5

Q ss_pred             cCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           38 KNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        38 ~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ..+++.+||+..|. +...  -..++.+.+++.++++...  .+. +.....+|.+.+++++    +   ..+.++++++
T Consensus        83 D~dG~~ylD~~~g~~~~~l--GH~hp~v~~Av~~q~~~~~--~~~~~~~~~~~lae~l~~~~----p---~~~~v~f~~S  151 (454)
T 4ao9_A           83 DADGHRYADFIAEYTAGVY--GHSAPEIRDAVIEAMQGGI--NLTGHNLLEGRLARLICERF----P---QIEQLRFTNS  151 (454)
T ss_dssp             ETTCCEEEESSGGGGTTTT--CSCCHHHHHHHHHHHHTCS--CCCSEESSHHHHHHHHHHHS----T---TCSEEEEESS
T ss_pred             ECCCCEEEEccccHHhhcc--cCCCHHHHHHHHHHHhcCC--CccCCcHHHHHHHHHHHHhC----C---CCCEEEEeCc
Confidence            44688899997762 2211  1246789999999987543  222 2222345555555554    2   4578999999


Q ss_pred             HHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHh----cC--ceEEEeecCCCCCCCCCHHHHHhhcccC--ccEEE
Q 022213          116 CKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQR----KQ--VEVRHFDLLPERNWEVDLDAVEALADKN--TAAMV  185 (301)
Q Consensus       116 ~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~----~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~  185 (301)
                      +++|.+.+++....  ..++|+...-+|++.......    ..  .....+|.       .|.+.+++.+++.  ..+.+
T Consensus       152 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAav  224 (454)
T 4ao9_A          152 GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVV  224 (454)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEE
T ss_pred             hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEE
Confidence            99999999987753  347899888888864321110    01  11222221       4788888877542  23444


Q ss_pred             EcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEE
Q 022213          186 IINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW  263 (301)
Q Consensus       186 l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~  263 (301)
                      +.-| ....|.+ .+.+.+++|.++|++||+++|.||+...  ..+..+ ....++-..+++   +++|.++ .|+.+|.
T Consensus       225 IvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~-a~e~~gv~PDi~---t~gK~lg-gG~Piga  297 (454)
T 4ao9_A          225 LVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHG-LANKLGIRSDLT---TLGKYIG-GGMSFGA  297 (454)
T ss_dssp             EECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTC-HHHHHTCCCSEE---EEEGGGG-TTSSCEE
T ss_pred             EeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcccc-chhccCCCCcEE---EeccccC-CCCccee
Confidence            5555 4456654 5678899999999999999999999963  212111 112233333455   7789954 6789999


Q ss_pred             EEee
Q 022213          264 LVTN  267 (301)
Q Consensus       264 ~~~~  267 (301)
                      +++.
T Consensus       298 ~~~~  301 (454)
T 4ao9_A          298 FGGR  301 (454)
T ss_dssp             EEEC
T ss_pred             eeeH
Confidence            9874

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.05  E-value=8.2e-09  Score=94.97  Aligned_cols=221  Identities=16%  Similarity=0.147  Sum_probs=129.7

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQ  118 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~  118 (301)
                      .+++.+||+..|.-.. .--..++.+.+++.+++..-....+..  ...+...++++.+.+..+ .-..+.+++++++++
T Consensus        61 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~lae~L~~~~p-~~~~~~v~f~~sGsE  136 (456)
T 4atq_A           61 VDGNSFIDLGSGIAVT-SVGASDPAVVAAVQEAAAHFTHTCFMV--TPYEGYVAVTEQLNRLTP-GDHAKRTVLFNSGAE  136 (456)
T ss_dssp             TTSCEEEESSHHHHTC-TTCTTCHHHHHHHHHHHHHCSCCTTTT--SCCHHHHHHHHHHHHHSS-CSSCEEEEEESSHHH
T ss_pred             CCCCEEEEccccHHHH-hcCCCCHHHHHHHHHHHhhccCcccCc--cCcHHHHHHHHHHHHhCC-CCCCcEEEEeCChHH
Confidence            4577788887661110 011245788899998887532111111  112333345555544221 112457999999999


Q ss_pred             HHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHh-cC-------------ceEEEeecCCC----CCCCCCHHHHHh---
Q 022213          119 AVEVILSVLAR--PGANVLLPRPGWPYYEGIAQR-KQ-------------VEVRHFDLLPE----RNWEVDLDAVEA---  175 (301)
Q Consensus       119 al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~-~g-------------~~~~~~~~~~~----~~~~~~~~~l~~---  175 (301)
                      |.+.+++....  ...+|+...-+|++....... .+             ..+..+|....    .....+.+.++.   
T Consensus       137 A~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  216 (456)
T 4atq_A          137 AVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAIT  216 (456)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHH
Confidence            99999987642  447899888899875332221 11             12333333210    001112222222   


Q ss_pred             ----hcccCccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEec
Q 022213          176 ----LADKNTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGS  249 (301)
Q Consensus       176 ----~~~~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s  249 (301)
                          .+..+..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||+...+...+. ......++-..+++   +
T Consensus       217 ~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~-~~a~e~~gv~PDiv---t  292 (456)
T 4atq_A          217 MIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEGVVPDII---T  292 (456)
T ss_dssp             HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTTCCCSEE---E
T ss_pred             HHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc-cccccccCCCCchh---h
Confidence                22233445555556 4445654 5668999999999999999999999998765553 33344444445566   6


Q ss_pred             CcccCCCCcceeEEEEeeC
Q 022213          250 ISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~  268 (301)
                      ++|.+ ..|+.+|.+++..
T Consensus       293 ~gK~l-ggg~P~~av~~~~  310 (456)
T 4atq_A          293 MAKGI-AGGLPLSAITGRA  310 (456)
T ss_dssp             ECGGG-GTTSSCEEEEEEH
T ss_pred             hhhcc-cCcCCceeeEecH
Confidence            68995 5789999998853

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.04  E-value=9.7e-09  Score=94.87  Aligned_cols=230  Identities=14%  Similarity=0.082  Sum_probs=137.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSG-IPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+||+..|.-... --...+.+.+++.++++.-.  .|....+ ..+....+|+.|.+..+  .+.+.|++++++
T Consensus        63 D~dG~~ylD~~~g~~~~~-lGh~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sG  137 (473)
T 4e3q_A           63 DVNGRRYLDANSGLWNMV-AGFDHKGLIDAAKAQYERFP--GYHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSG  137 (473)
T ss_dssp             ETTCCEEEETTTTTTTCT-TCSCCHHHHHHHHHHHHHCC--CCCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSH
T ss_pred             eCCCCEEEEcccCHHHhh-ccCCCHHHHHHHHHHHHhcc--cccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCch
Confidence            456889999988732211 11245788899998887432  2222111 23445556666655332  235689999999


Q ss_pred             HHHHHHHHHHhc-------CCC-CEEEEcCCCCcchHHHH-HhcCc-----------eEEEeecCCC---CCCCCC----
Q 022213          117 KQAVEVILSVLA-------RPG-ANVLLPRPGWPYYEGIA-QRKQV-----------EVRHFDLLPE---RNWEVD----  169 (301)
Q Consensus       117 ~~al~~~~~~l~-------~~g-d~Vl~~~p~~~~~~~~~-~~~g~-----------~~~~~~~~~~---~~~~~~----  169 (301)
                      ++|.+.+++...       +++ .+|+...-+|++..... ...+.           ....++....   ......    
T Consensus       138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  217 (473)
T 4e3q_A          138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQF  217 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHH
Confidence            999999998753       133 57888888888642222 11111           1222221100   000011    


Q ss_pred             ----HHHHHhhccc---CccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          170 ----LDAVEALADK---NTAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       170 ----~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                          .+++++.+..   +..+.++.-| ..-.|.+ .+.+.+++|.++|++||+++|.||+...|...+.- .....++-
T Consensus       218 ~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~-fa~e~~gv  296 (473)
T 4e3q_A          218 VARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-WGCVTYDF  296 (473)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSS-CHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccch-hHHHhcCC
Confidence                2234443322   3345556656 4445654 55679999999999999999999999998655532 23333444


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                      ..+++   +++|.++..++.+|.+++++        ++.+.+..
T Consensus       297 ~PDi~---t~~K~l~gG~~Pl~av~~~~--------~i~~~~~~  329 (473)
T 4e3q_A          297 TPDAI---ISSKNLTAGFFPMGAVILGP--------ELSKRLET  329 (473)
T ss_dssp             CCSEE---EECGGGGTTSSCCEEEEECH--------HHHHHHHH
T ss_pred             CCChH---HhcccccCCCCCcccccccH--------HHHHHhcc
Confidence            44566   67999765559999999843        46666644

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.03  E-value=4.5e-09  Score=103.44  Aligned_cols=215  Identities=13%  Similarity=0.072  Sum_probs=126.8

Q ss_pred             CeeeccCCCCCCCCCCC-C-hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           43 PVVPLGYGDPTAFPCFR-T-AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~-~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      .++|+..|.-..  .++ . .+.+.+++.++++.-.  .+.......+...++++.|.+..+.+ ..+.+++++++++|+
T Consensus       381 ~ylD~~sg~~~~--~lGh~~~p~i~~Ai~~Q~~~l~--h~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~  455 (831)
T 4a0g_A          381 QQFDACASWWTQ--GPDPTFQAELAREMGYTAARFG--HVMFPENVYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAI  455 (831)
T ss_dssp             EEEETTHHHHTC--CCCHHHHHHHHHHHHHHHHHHS--SCCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHH
T ss_pred             heeeecccHhhc--CCCCCCCHHHHHHHHHHHhhcc--cccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHH
Confidence            567776651110  122 2 5788999998887421  11111112344446666665532200 146899999999999


Q ss_pred             HHHHHHhc-----CCC------------CEEEEcCCCCcch-HHHHHhcCce---------------E------------
Q 022213          121 EVILSVLA-----RPG------------ANVLLPRPGWPYY-EGIAQRKQVE---------------V------------  155 (301)
Q Consensus       121 ~~~~~~l~-----~~g------------d~Vl~~~p~~~~~-~~~~~~~g~~---------------~------------  155 (301)
                      +.+++...     ..|            .+|+...-+|++- ...+...|..               +            
T Consensus       456 E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  535 (831)
T 4a0g_A          456 EIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG  535 (831)
T ss_dssp             HHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETT
T ss_pred             HHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCC
Confidence            99998762     122            3688888888753 2222222210               0            


Q ss_pred             -EEeecCCC-C-------CCCCC------------------HHHHHhhccc-------CccEEEEcCC--CCCcccCC-C
Q 022213          156 -RHFDLLPE-R-------NWEVD------------------LDAVEALADK-------NTAAMVIINP--GNPCGNVF-T  198 (301)
Q Consensus       156 -~~~~~~~~-~-------~~~~~------------------~~~l~~~~~~-------~~~~v~l~~p--~nptG~~~-~  198 (301)
                       ..++.... .       .+ .+                  .+.+++.+.+       ...+.++.-|  ++..|... +
T Consensus       536 ~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~  614 (831)
T 4a0g_A          536 SWNISLPESFSEIAPEYGTF-TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD  614 (831)
T ss_dssp             EEEEECCTTSCCCCSSTTEE-SCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred             ceEecCCccccccccccccc-cchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence             01111100 0       00 01                  2456666642       2334455555  57777754 7


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc-ceeEEEEeeC
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG-WRFGWLVTND  268 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~  268 (301)
                      .+.+++|.++|++||+++|+||++..+...+..+ ....++-..+++   ++||.++. | +++|+++++.
T Consensus       615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~PDii---tlsK~L~g-G~~Plgav~~~~  680 (831)
T 4a0g_A          615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIA---CFAKLLTG-GMVPLAVTLATD  680 (831)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-THHHHSSCCSEE---EECGGGGT-TSSCCEEEEECH
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCccccccCCCch-hhHhcCCCCcEE---EEeccccc-CccCcEEEEECH
Confidence            8899999999999999999999999886666544 333333334444   79999765 6 8999999854

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.67  E-value=2.8e-07  Score=83.26  Aligned_cols=220  Identities=11%  Similarity=0.058  Sum_probs=124.3

Q ss_pred             cccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC------CCCCCHHHHHHHHH
Q 022213           22 AVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA------TNSGIPPARRAIAD   95 (301)
Q Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~   95 (301)
                      ..+|.++++...+.     ...-|+|=..+.      .+.+.+.+++...+.+.=.-.|+      --+.+.++..-..+
T Consensus        39 Dpei~~~i~~E~~R-----Q~~~ieLIASEN------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~  107 (490)
T 3ou5_A           39 DPEMWELLQREKDR-----QCRGLELIASEN------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQR  107 (490)
T ss_dssp             CHHHHHHHHHHHHH-----HHHSEECCTTCC------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-----HHcCceEecCCC------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHH
Confidence            44566666544332     245577744442      34567878777666532111222      11123344443334


Q ss_pred             HHhhhCCCCCCCC----CEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCc--eEEEeecC
Q 022213           96 YLSRDLPYKLSAD----DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG--------IAQRKQV--EVRHFDLL  161 (301)
Q Consensus        96 ~l~~~~~~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~  161 (301)
                      ...+-++.  +..    ||-. .++++|...++.+|++|||+|+-.+..+.++..        .+...|.  +...++++
T Consensus       108 rak~lF~a--~~A~w~VNVQP-~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd  184 (490)
T 3ou5_A          108 RALEAFDL--DPAQWGVNVQP-YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN  184 (490)
T ss_dssp             HHHHHTTC--CTTTEEEECCC-SSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEE
T ss_pred             HHHHHhCC--CccccCCCCCc-CCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC
Confidence            44444442  322    3333 456799999999999999999988776665421        1112222  34444444


Q ss_pred             CCCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccC
Q 022213          162 PERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFG  239 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~  239 (301)
                      ++ +..+|.|++++...+ +++.|++..-.+|  ..++   ++++.++|.+-|.++++|-++.. ++-++..+.|+.. .
T Consensus       185 ~~-t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-A  257 (490)
T 3ou5_A          185 PK-TGLIDYNQLALTARLFRPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A  257 (490)
T ss_dssp             TT-TTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-C
T ss_pred             CC-CCcccHHHHHHHHhhcCCCeEEECCccCc--cccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-c
Confidence            43 446999999987765 7887776544444  3456   56666666688999999999873 4444555555543 2


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .    |+..|++|+  ++|-|-|.|...+
T Consensus       258 D----vVTtTTHKT--LrGPrGG~Il~~~  280 (490)
T 3ou5_A          258 D----IVTTTTHKT--LRGARSGLIFYRK  280 (490)
T ss_dssp             S----EEEEESSST--TCSCSCEEEEEEC
T ss_pred             e----EEecccccc--ccCCCceEEEecc
Confidence            1    889999999  5788889988765

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=82.86  E-value=5.8  Score=36.63  Aligned_cols=112  Identities=16%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             CCCCCCCCEEEcCCHHHHHHHHHHHhcC---C---------C-C-----EEEEcCCCCcc-------------------h
Q 022213          102 PYKLSADDVYVTLGCKQAVEVILSVLAR---P---------G-A-----NVLLPRPGWPY-------------------Y  144 (301)
Q Consensus       102 ~~~~~~~~i~~t~g~~~al~~~~~~l~~---~---------g-d-----~Vl~~~p~~~~-------------------~  144 (301)
                      ...++++.|.++.++..++...+++|.+   .         | .     ..+...|.|.-                   +
T Consensus       125 ~L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~  204 (525)
T 3gh5_A          125 DLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQ  204 (525)
T ss_dssp             EEEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHH
T ss_pred             EEEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHHHHH
Confidence            3345667788888887787777777742   1         1 1     13455666641                   1


Q ss_pred             HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213          145 EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV  217 (301)
Q Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii  217 (301)
                      ......+++....+.+..+.+|.+..+.+.++-.....    .......|..++.+++++|++.|+++++-||
T Consensus       205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~----~~~~~~~~g~YT~~di~eIv~YA~~rgI~VI  273 (525)
T 3gh5_A          205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSK----GQVGGGPGGYYTQEQFKDIVSYAAERYIEVI  273 (525)
T ss_dssp             HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTS----CCTTSSCCCCBCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHcCCcEEEEEeccCCccccccccchhhhhccCc----cccCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence            22333445555555554444444333322221110000    0011234678999999999999999999876

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=80.38  E-value=8.6  Score=32.19  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             CCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------
Q 022213          106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------  179 (301)
Q Consensus       106 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------  179 (301)
                      +..-+++|.+++..=..+.+.|.+.|-+|++..-.-.......+..|.+...+..+-     -|.+.+++.+++      
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADS-----ANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence            444566666666555777788889999988876554455556666676666665533     355565554432      


Q ss_pred             CccEEEEcCC-CCCccc--CCCHHHHHHHHHHH
Q 022213          180 NTAAMVIINP-GNPCGN--VFTYHHLQEIAEMA  209 (301)
Q Consensus       180 ~~~~v~l~~p-~nptG~--~~~~~~l~~i~~~~  209 (301)
                      +.. ++++|. .++.+.  -++.++|+++.++-
T Consensus       103 ~iD-iLVNNAG~~~~~~~~~~~~e~w~~~~~vN  134 (273)
T 4fgs_A          103 RID-VLFVNAGGGSMLPLGEVTEEQYDDTFDRN  134 (273)
T ss_dssp             CEE-EEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred             CCC-EEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence            233 445554 222222  46788998888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-47
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	6e-45
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	2e-44
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	4e-29
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	6e-28
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-25
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-24
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	5e-22
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	7e-22
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	3e-21
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	3e-20
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	3e-20
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	1e-19
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	2e-19
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	3e-17
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	6e-15
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	1e-14
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	3e-14
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	1e-13
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	7e-13
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	2e-11
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	7e-11
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	3e-10
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	4e-09
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	1e-04

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score =  161 bits (408), Expect = 1e-47
 Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 7/232 (3%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           +     +V L  G+P     F T    ++A   A+  GK   YA  +GIP  R A+A+  
Sbjct: 27  RRQGVDLVALTAGEPD----FDTPEHVKEAARRALAQGKTK-YAPPAGIPELREALAEKF 81

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            R+    ++ ++  VT+G  QA+  +   +  PG  V++  P W  Y  + +     V  
Sbjct: 82  RRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVE 141

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
            + LPE  +  D + V       T A+V+ +P NP G V+    L+ +A +A +    +V
Sbjct: 142 VETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLV 201

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP 269
           +DE+Y HL +    ++P  +       +T+   +K + + GWR G+      
Sbjct: 202 SDEIYEHLLYEGEHFSPGRVAPE--HTLTVNGAAKAFAMTGWRIGYACGPKE 251

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  154 bits (391), Expect = 6e-45
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
           + V+ LG G+P     F T    ++   +A+  G    Y  N G+   R AIA+ L +  
Sbjct: 25  KDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQN 79

Query: 102 PYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160
             +     ++ V LG  QA  + LS   + G  VL+P P +  Y         +      
Sbjct: 80  GIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPT 139

Query: 161 LPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE 220
             E  + +++D ++      T A++I +P NP G V T   L+EIA+   +  ++V++DE
Sbjct: 140 YEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDE 199

Query: 221 VYGHLTFGSIPYTPM-GLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
           VY H  +    +  +  L G     IT+   SK + + GWR G++ 
Sbjct: 200 VYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA 245

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  153 bits (387), Expect = 2e-44
 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           K +   V     G+P     F T     +A   A+  GK   Y   +G P  R AIA  L
Sbjct: 26  KAEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQGKTR-YGPAAGEPRLREAIAQKL 80

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            RD      AD++ VT G KQ++  ++  +  PG  V++P P W  Y  + +  +     
Sbjct: 81  QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVI 140

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
                E  ++V  + +       T  +V   P NP G V+T   ++ IA++A +  + V+
Sbjct: 141 LPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVL 200

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVP--VITLGSISKRWLVPGWRFGWLVTNDP 269
           +DE+Y  + +    +  +G          +     +K + + GWR G+L    P
Sbjct: 201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP 254

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score =  112 bits (282), Expect = 4e-29
 Identities = 40/295 (13%), Positives = 84/295 (28%), Gaps = 58/295 (19%)

Query: 9   WGFEDKQEHKAAPAVTVKTSLASIIDSVNKND-------------------PRPVVPLGY 49
           W  +  +E +A   +       + +D +                             +  
Sbjct: 4   WTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVAS 63

Query: 50  GDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI--PPARRAIADYLSRDLPYKLSA 107
           GD      +    +   A++ +        +   S        + I +          +A
Sbjct: 64  GDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV--GNAAA 121

Query: 108 DDVYVTLGC--KQAVEVILSVLAR--------PGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            D Y+  G    Q +  ++  L+         P + V+   P +P +    +        
Sbjct: 122 KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK-------- 173

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           +       W  +      +++      ++ +P NP G +   H + +            +
Sbjct: 174 YFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKG--------CKSI 223

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGI 272
            D VY    +  I Y            I L ++SK     G RFGW +  D +  
Sbjct: 224 YDMVYYWPHYTPIKYKAD-------EDILLFTMSKFTGHSGSRFGWALIKDESVY 271

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  109 bits (272), Expect = 6e-28
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 5/261 (1%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           +     V+ L  GDP  F  F+     ++A   A++ G  N Y  + G+P  R+AI +  
Sbjct: 26  EKKGIKVIRLNIGDPVKFD-FQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVERE 83

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            R     ++ DDV VT    +A+++I   L  PG  +L+P P +P Y G+ +    +   
Sbjct: 84  KRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVE 143

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
           +  + E +W+ D+D +       T A+ +INP NP G ++    L+EI  +A +  + V+
Sbjct: 144 YRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVI 203

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG 277
           +DE+Y  +T+     +P  L    VPVI +  +SK +   GWR G++   DP     +  
Sbjct: 204 SDEIYDLMTYEGEHISPGSLTKD-VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE-- 260

Query: 278 IIDSIKDCLSIYSDIPTFIQV 298
           + ++I     I     T  Q 
Sbjct: 261 VREAIDRLARIRLCPNTPAQF 281

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (256), Expect = 1e-25
 Identities = 51/276 (18%), Positives = 81/276 (29%), Gaps = 16/276 (5%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           K DPR   V L  G    +    P  +   EAE  +    +    + Y    G+   R A
Sbjct: 21  KEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNA--QPHGASLYLPMEGLNCYRHA 78

Query: 93  IADYLSRDLPYKLSADDVYVTLGCKQAVEV----ILSVLARPGANVLLPRPGWPYYEGIA 148
           IA  L       L    V        +  +           P + V +  P W  +  I 
Sbjct: 79  IAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF 138

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEAL---ADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
                EV  +    E    V  + + A        +  ++     NP G   T      +
Sbjct: 139 AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAV 198

Query: 206 AEMARKLRVMVVADEVYGHLTFGS--IPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
            E+ +   ++   D  Y     G     Y    +  + +P +   S SK + + G R G 
Sbjct: 199 IEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGG 258

Query: 264 LVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299
           L     +       +          YS  P F    
Sbjct: 259 LSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQV 294

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 99.3 bits (246), Expect = 2e-24
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 5/226 (2%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
                 V+ L  G+P     F T     +  V  ++ G+   Y    GI   R  IA  +
Sbjct: 24  IKKGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKGEVK-YTDPRGIYELREGIAKRI 78

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
                  +S D V VT G KQA+      L  PG  V++  P W  Y          V  
Sbjct: 79  GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNV 138

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
            +    +N++  L+ VE L    T A++I +P NP G V+    L+ +  +A+K    ++
Sbjct: 139 VETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII 198

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
           +DEVY  L +     + + +      ++ +   SK   + GWR G+
Sbjct: 199 SDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGY 244

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 93.1 bits (230), Expect = 5e-22
 Identities = 40/283 (14%), Positives = 73/283 (25%), Gaps = 23/283 (8%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           + DP P  V LG G    D           + E  I  A  S   + Y    G+   R  
Sbjct: 25  REDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRI--ANNSSLNHEYLPILGLAEFRTC 82

Query: 93  IADYLSRDLPYKLSAD---------DVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPY 143
            +     D    L                     + +    +        V +  P W  
Sbjct: 83  ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN 142

Query: 144 YEGIAQRKQVEVRHFDLLPERNWEV----DLDAVEALADKNTAAMVIINPGNPCGNVFTY 199
           + G+      +        +            +    A + +  ++     NP G   T 
Sbjct: 143 HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTP 202

Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF---GSIVPVITLGSISKRWLV 256
              ++IA + ++  +    D  Y     G++      +         +    S SK + +
Sbjct: 203 EQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGL 262

Query: 257 PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299
              R G L             +    K     +S+ P      
Sbjct: 263 YNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARI 305

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 92.4 bits (228), Expect = 7e-22
 Identities = 42/250 (16%), Positives = 73/250 (29%), Gaps = 20/250 (8%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
             D R   V LG G    D        +   AE  I +   S   + Y   +G+P     
Sbjct: 24  GQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND--SSYNHEYLGITGLPSLTSN 81

Query: 93  IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA----RPGANVLLPRPGWPYYEGIA 148
            A  +       L  D V           + +S        P   V L +P W  +  I 
Sbjct: 82  AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF 141

Query: 149 QRKQVEVRHFDLLPERNWEVDLDAVEALA---DKNTAAMVIINPGNPCGNVFTYHHLQEI 205
           + + ++   +         +DL+          + +  ++     NP G   T     +I
Sbjct: 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTP------MGLFGSIVPVITLGSISKRWLVPGW 259
            +       + + D  Y     G +          +    ++ PV    S +K   + G 
Sbjct: 202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE 261

Query: 260 RFGWLVTNDP 269
           R G       
Sbjct: 262 RVGCFHLALT 271

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (223), Expect = 3e-21
 Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 17/235 (7%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSGIPPARRAIADYLSRD 100
             VV LG G P     F     A +A   AV      N Y    G PP  + +A +    
Sbjct: 25  HDVVNLGQGFPD----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80

Query: 101 LPYKLSADD-VYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFD 159
           L  ++     V VT+G   A+      L   G  V++  P +  YE +            
Sbjct: 81  LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVS 140

Query: 160 LLP----------ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA 209
           L P            NW++D   +       T A+V+  P NP G VF+   L+ +A + 
Sbjct: 141 LKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLC 200

Query: 210 RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGW 263
           ++  V+ + DEVY  + +    +  +     +    +T+GS  K +   GW+ GW
Sbjct: 201 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGW 255

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (216), Expect = 3e-20
 Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 17/276 (6%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           + D RP  + LG G    +    P   +  +AE  +++   +     Y    GIP   R 
Sbjct: 21  RADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE---NETTKNYLGIDGIPEFGRC 77

Query: 93  IADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN----VLLPRPGWPYYEG-- 146
             + L       ++               + ++            V +  P WP ++   
Sbjct: 78  TQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF 137

Query: 147 -IAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEI 205
             A  +  E  ++D          L      A      +      NP G   T    Q +
Sbjct: 138 NSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTL 197

Query: 206 AEMARKLRVMVVADEVYGHLTFGSIPYTP--MGLFGSIVPVITLGSISKRWLVPGWRFGW 263
           A+++ +   + + D  Y     G                 +I   S SK + +   R G 
Sbjct: 198 AQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGA 257

Query: 264 LVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299
                 +                + YS+ P      
Sbjct: 258 CTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASV 293

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 87.4 bits (215), Expect = 3e-20
 Identities = 55/273 (20%), Positives = 90/273 (32%), Gaps = 14/273 (5%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           + DPR   + LG G         P  R    AE  +++   +     YA  SG P  ++A
Sbjct: 21  RADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE---TETTKTYAGLSGEPEFQKA 77

Query: 93  IADYLSRD-LPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRK 151
           + + +  D L  + +A    V         + L+ +A P   V +  P WP +  I    
Sbjct: 78  MGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM 137

Query: 152 QVEVRHFDLLPERNWEV---DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEM 208
            + V+ +         V    + A  A A K    ++     NP G   T     EIA +
Sbjct: 138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASI 197

Query: 209 ARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGSISKRWLVPGWRFGWLVT 266
             K   + + D  Y     G           +     V+   S SK + +   R G L+ 
Sbjct: 198 LEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLA 257

Query: 267 NDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299
              +   ++             YS  P      
Sbjct: 258 LCADAATRELAQGAMAFLNRQTYSFPPFHGAKI 290

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 85.8 bits (211), Expect = 1e-19
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 19/278 (6%)

Query: 38  KNDPRP-VVPLGYG----DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA 92
           K D     + LG G    D           +AE  I           Y   +G+    RA
Sbjct: 23  KRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK---KMDKEYLPIAGLADFTRA 79

Query: 93  IADYLSRDLPYKLSADDVYVTLG-----CKQAVEVILSVLARPGANVLLPRPGWPYYEGI 147
            A+    +      +       G       +     L    +   +V LP+P W  +  I
Sbjct: 80  SAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI 139

Query: 148 AQRKQVEVRHFDLLPERNWEVDLDAVEALA---DKNTAAMVIINPGNPCGNVFTYHHLQE 204
            +   ++++ +     +   +D            + +  ++     NP G        +E
Sbjct: 140 FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKE 199

Query: 205 IAEMARKLRVMVVADEVYGHLTFGSIPYTPMG---LFGSIVPVITLGSISKRWLVPGWRF 261
           +A + +K  ++   D  Y     G I              + V+   S +K   + G R 
Sbjct: 200 LASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA 259

Query: 262 GWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC 299
           G       +    K            +YS+ P      
Sbjct: 260 GAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARI 297

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 85.9 bits (211), Expect = 2e-19
 Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 14/243 (5%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNS 84
           AS +  + K      V+ L  G   P  FP        +   V+ +     K   Y T  
Sbjct: 16  ASEVRELLKLVETSDVISLAGGLPAPETFP----VETIKKIAVEVLEEHADKALQYGTTK 71

Query: 85  GIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYY 144
           G  P R A+A ++ +     +S  ++    G +QA+++I  V   PG  +++  P +   
Sbjct: 72  GFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAA 131

Query: 145 EGIAQRKQVEVRHFDLLPE----RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH 200
               +    E     L  +       E  L+ +     +      +    NP G   +  
Sbjct: 132 IQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVD 191

Query: 201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWR 260
             +++ E+A +   ++V D  Y  L +   P  P+  F     VI LG+ SK  L PG+R
Sbjct: 192 RRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK-ILAPGFR 250

Query: 261 FGW 263
            GW
Sbjct: 251 IGW 253

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 78.9 bits (193), Expect = 3e-17
 Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 19/207 (9%)

Query: 80  YATNSGIPPARRAIADYLS--RDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137
           +    G+P  ++A+ D+++  R        + + +T G   A E  +  LA PG  VL+P
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 139

Query: 138 RPGWP-YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------NTAAMVIINPG 190
            P +P +   +  R  VE+          +++   A+E    +          +++ NP 
Sbjct: 140 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 199

Query: 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM----------GLFGS 240
           NP G   T + L  +        + +++DE+Y    F S  +  +               
Sbjct: 200 NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 259

Query: 241 IVPVITLGSISKRWLVPGWRFGWLVTN 267
              V  + S+SK   +PG+R G + +N
Sbjct: 260 WQRVHVVYSLSKDLGLPGFRVGAIYSN 286

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 72.4 bits (176), Expect = 6e-15
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 17/201 (8%)

Query: 80  YATNSGIPPARRAIADYLSR--DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLP 137
           +    G+P  R+AIA ++ +      +   + V +  G   A E I+  LA PG   L+P
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVP 138

Query: 138 RPGWPYYEGI----AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM---VIINPG 190
            P +P +          + + +        +     +      A K+   +   ++ NP 
Sbjct: 139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPS 198

Query: 191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP------- 243
           NP G       L+ +     +  + +V DE+Y    F +  +  +               
Sbjct: 199 NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKD 258

Query: 244 -VITLGSISKRWLVPGWRFGW 263
            V  + S+SK   +PG+R G 
Sbjct: 259 LVHIVYSLSKDMGLPGFRVGI 279

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 74/254 (29%), Positives = 132/254 (51%), Gaps = 11/254 (4%)

Query: 29  LASIIDSVNKN-DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIP 87
           + ++ D+   +  P+P++ L  GDPT      T+      + +A+ S + N Y    G P
Sbjct: 16  IRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSP 75

Query: 88  PARRAIADYLSR------DLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGW 141
            AR A+A +         +L   +  D+V +  G    + + ++ +   G   L+P+PG+
Sbjct: 76  EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGF 135

Query: 142 PYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHH 201
           P+YE + +   + +  ++  PE +WE DLD +  L D  T  +++ NP NPCG+ F+  H
Sbjct: 136 PHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKH 195

Query: 202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP----MGLFGSIVPVITLGSISKRWLVP 257
           +++I  +A +LR+ + +DE+Y  + F           +  F + VP + LG  +K  +VP
Sbjct: 196 VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP 255

Query: 258 GWRFGWLVTNDPNG 271
           GWR GWL+  DP+G
Sbjct: 256 GWRLGWLLYVDPHG 269

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 70.6 bits (171), Expect = 3e-14
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSGIPPARRAIADYLSRDL 101
            + LG G P     +     A +A+  A  S     N Y    G P   +A++   S+ +
Sbjct: 28  PLNLGQGFPD----YHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLV 83

Query: 102 PYKLS-ADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDL 160
              ++   +V VT+G  +A+   +      G  V++  P +  YE + +      R   L
Sbjct: 84  DRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPL 143

Query: 161 LPERN--------WEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL 212
            P +         W +D + +EAL ++ T  ++I  P NP G V     L+ +A + +K 
Sbjct: 144 KPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW 203

Query: 213 RVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGW 263
            V+ V+DEVY H+ F    +  +    G     IT+GS  K + + GW+ GW
Sbjct: 204 NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGW 255

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.9 bits (164), Expect = 1e-13
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 38  KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYL 97
           K     +  L  G P      +T     + I +     +   Y+ ++GI   R A A Y 
Sbjct: 24  KKRGVRIHHLNIGQPD----LKTPEVFFERIYENKP--EVVYYSHSAGIWELREAFASYY 77

Query: 98  SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH 157
            R     +  ++V VT G  +A+    +V+A PG  +L+  P +  Y   A+   V++  
Sbjct: 78  KRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIP 137

Query: 158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV 217
                E  + +    +E+  ++ T  +V+ NP NP G V+    ++ + E+A +  + ++
Sbjct: 138 VTRRMEEGFAIP-QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLI 196

Query: 218 ADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV 265
            DEVY  + F     + + +    V VI   S+SK++   G R G L+
Sbjct: 197 VDEVYSEIVFRGEFASALSIESDKVVVID--SVSKKFSACGARVGCLI 242

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 65.9 bits (159), Expect = 7e-13
 Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 15/221 (6%)

Query: 44  VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPY 103
            V LG G P+            +A+  A+  G+ + YA  +G+P  R A+A+       +
Sbjct: 27  AVNLGQGFPS----NPPPPFLLEAVRRAL--GRQDQYAPPAGLPALREALAEE------F 74

Query: 104 KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPE 163
            +  + V VT G  +A+ V+L  L  PG  V++  P +  Y   A     + R   L   
Sbjct: 75  AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLT 134

Query: 164 RNWEV-DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVY 222
                 DL A+E      T A+++  P NP G VF    L+ IA +AR   + +++DEVY
Sbjct: 135 PEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVY 194

Query: 223 GHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGW 263
             L +G  P             +       R    G+R GW
Sbjct: 195 DELYYGERPRRLREFAPERTFTVGSAGK--RLEATGYRVGW 233

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 6/223 (2%)

Query: 42  RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDL 101
              + L  G    FP F      ++ +   V  G  N YA  +G+   R AIA    R  
Sbjct: 26  HQAINLSQG----FPDFDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLY 80

Query: 102 PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLL 161
            Y+  AD                        + ++           A      +     L
Sbjct: 81  GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL 140

Query: 162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV 221
              ++ VD     AL  + T  +++  P NP   V+       + +      + V++DEV
Sbjct: 141 QPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEV 200

Query: 222 YGHLTFGSIPYTPMGLFGSIVP-VITLGSISKRWLVPGWRFGW 263
           Y H+ F    +  +     +    + + S  K + + GW+ G+
Sbjct: 201 YEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 243

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 60.2 bits (144), Expect = 7e-11
 Identities = 41/241 (17%), Positives = 86/241 (35%), Gaps = 9/241 (3%)

Query: 37  NKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADY 96
           N      VVPL   D      F+   E  + +   +       Y         ++ +  +
Sbjct: 26  NPEVGNEVVPLSVADME----FKNPPELIEGLKKYLDETVLG-YT--GPTEEYKKTVKKW 78

Query: 97  LSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANV-LLPRPGWPYYEGIAQRKQVEV 155
           +     + +  D +  T G   AV   +    +PG  V ++    +P++  I  +++  +
Sbjct: 79  MKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKII 138

Query: 156 RHFDLLPERNWEV-DLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRV 214
               L  +  + +      +   DKN  A++  +P NP G V+    LQ+I ++  K  +
Sbjct: 139 ECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL 198

Query: 215 MVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274
           M+ +DE++  L      +T        +   T+   +          G       N   +
Sbjct: 199 MLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR 258

Query: 275 K 275
           +
Sbjct: 259 E 259

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.0 bits (139), Expect = 3e-10
 Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 21/169 (12%)

Query: 61  AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV 120
               ++     +         ++            +L  D       D          A+
Sbjct: 31  GFLIDEKDKALLN----TYIGSSYFAEKVNEYGLKHLGGD-----ENDKCVGFNRTSSAI 81

Query: 121 EVILSVLARPG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK 179
              +  L      + L   PG P  E   +   V  ++F+          +  +    DK
Sbjct: 82  LATILALKPKKVIHYLPELPGHPSIERSCK--IVNAKYFESD-------KVGEILNKIDK 132

Query: 180 NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFG 228
           +T  ++  +  +    V    + +++   A+    +V  D+  G     
Sbjct: 133 DTLVIITGSTMDL--KVIELENFKKVINTAKNKEAIVFVDDASGARVRL 179

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 54.5 bits (129), Expect = 4e-09
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 9/231 (3%)

Query: 46  PLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKL 105
           P    D      F TA    +A+   +  G F  Y+          AIA + S      +
Sbjct: 3   PFTISDMD----FATAPCIIEALNQRLMHGVFG-YSRWKN-DEFLAAIAHWFSTQHYTAI 56

Query: 106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRH--FDLLPE 163
            +  V         V  ++   +  G  V++  P +  +    +  Q  V     +   +
Sbjct: 57  DSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQAD 116

Query: 164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG 223
             +         LA      M++ +P NP G V+T   L+ +A++  +  V V++DE++ 
Sbjct: 117 GWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHM 176

Query: 224 HLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQ 274
            + +G  P+ P     +      L S SK + +P     + +  + +    
Sbjct: 177 DMVWGEQPHIPWS-NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDA 226

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 13/244 (5%)

Query: 30  ASIIDSVNKNDPRP-VVPLGYG--DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGI 86
           +SII  + K       +  G G  DP  FP  +   E    I++         Y+T  G 
Sbjct: 25  SSIIREILKFAADKDAISFGGGVPDPETFP-RKELAEIAKEIIEKEYHYTLQ-YSTTEGD 82

Query: 87  PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG 146
           P  ++ I   L R        +D  +     Q    ++  L     +  +          
Sbjct: 83  PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI 142

Query: 147 IAQRKQVEVRHFDLLPERNWEVDL-------DAVEALADKNTAAMVIINPGNPCGNVFTY 199
            A R+ +       L +   ++++               +     V+ N  NP G   + 
Sbjct: 143 NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL 202

Query: 200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW 259
              + + E+A K  + +V D+ YG L +      P+   G    V+ L +   + L PG 
Sbjct: 203 EKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL-NTFSKVLAPGL 261

Query: 260 RFGW 263
           R G 
Sbjct: 262 RIGM 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.9
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.88
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.82
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.8
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.77
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.76
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.74
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.73
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.72
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.71
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.69
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.68
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.67
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.63
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.63
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.61
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.6
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.6
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.59
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.59
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.58
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.56
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.54
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.53
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.51
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.51
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.5
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.49
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.47
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.44
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.43
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.4
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.39
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.38
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.34
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.32
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.3
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.28
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.25
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.25
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.25
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.15
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.14
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.13
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.02
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.02
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.0
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.98
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.92
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.91
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.9
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.88
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.82
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.79
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.75
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.66
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	97.88
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.36
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.97
d1ofux_	119	Hypothetical protein PA3008 {Pseudomonas aeruginos	84.72

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.1e-48  Score=348.34  Aligned_cols=271  Identities=24%  Similarity=0.403  Sum_probs=236.5

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARR   91 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~   91 (301)
                      -.+++++..+++.++.+.+.+.+ +. ..+.++|+|+.|+|    +|++|+.+++++.+++.++. .+|+++.|.++||+
T Consensus         3 ~~~~r~~~~~~s~~~~i~~~a~~-~~-~~G~~vi~l~~g~p----~~~~p~~i~~a~~~~~~~~~-~~Y~~~~G~~~lR~   75 (382)
T d1b5pa_           3 GLSRRVQAMKPSATVAVNAKALE-LR-RQGVDLVALTAGEP----DFDTPEHVKEAARRALAQGK-TKYAPPAGIPELRE   75 (382)
T ss_dssp             CCCHHHHHCCCCHHHHHHHHHHH-HH-HTTCCCEECCCSSC----SSCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHH-HH-hCCCCeEECCCCCC----CCCCCHHHHHHHHHHHhcCC-cCCCCCCCCHHHHH
Confidence            35788899999999999875443 32 34789999999996    47889999999999887654 48999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           92 AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      ++++++.+.++..+++++|++|+|+++++..++++++++||.|++++|+|.+|...++..|.+++.+++.+++++.+|++
T Consensus        76 ~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (382)
T d1b5pa_          76 ALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE  155 (382)
T ss_dssp             HHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHH
T ss_pred             HHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99999999899999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      ++++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+...  ..+++|+++|||
T Consensus       156 ~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~S  233 (382)
T d1b5pa_         156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAA  233 (382)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEEST
T ss_pred             HHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecch
Confidence            999999988999999999999999999999999999999999999999999999998765555433  235899999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |.|++||+|+||+++++        ++++++..... ...+++.+.|.+
T Consensus       234 K~~~~~GlR~G~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~  274 (382)
T d1b5pa_         234 KAFAMTGWRIGYACGPK--------EVIKAMASVSRQSTTSPDTIAQWA  274 (382)
T ss_dssp             TTTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHH
T ss_pred             hhccCcHhheEEEEECH--------HHHHHHHHHHHhcccCcccccccc
Confidence            99999999999999743        47777766543 344566666643

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.1e-47  Score=347.25  Aligned_cols=273  Identities=23%  Similarity=0.356  Sum_probs=237.5

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARR   91 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~   91 (301)
                      ..+++++..+++.+..+.+...+ + ++.+.++|+|+.|+|    ++++|+.+.+++.++++.+. .+|+++.|.++||+
T Consensus         2 ~~~~~~~~~~~s~~~~i~~~a~~-~-~~~g~~vi~l~~G~p----~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lR~   74 (388)
T d1j32a_           2 KLAARVESVSPSMTLIIDAKAKA-M-KAEGIDVCSFSAGEP----DFNTPKHIVEAAKAALEQGK-TRYGPAAGEPRLRE   74 (388)
T ss_dssp             CCCHHHHTSCCCSSTTTHHHHHH-H-HTTTCCCEECCCSSC----SSCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHH
T ss_pred             chhhHhhcCCcCHHHHHHHHHHH-H-HHCCCCeEECCCCCC----CCCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHH
Confidence            35677888999987776654433 3 345789999999996    47888999999999887644 47999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           92 AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      ++++++.+.++..+++++|++|+|+++++..++++++++||.|++++|+|..|...++..|.+++.++...+++|.+|++
T Consensus        75 aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  154 (388)
T d1j32a_          75 AIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPE  154 (388)
T ss_dssp             HHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHH
T ss_pred             HHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC--CCEEEEec
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI--VPVITLGS  249 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s  249 (301)
                      ++++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++..+.++......  +++|+++|
T Consensus       155 ~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S  234 (388)
T d1j32a_         155 QIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSG  234 (388)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEE
T ss_pred             HHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecC
Confidence            9999999889999999999999999999999999999999999999999999999987777776655432  47999999


Q ss_pred             CcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          250 ISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       250 ~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      |||.|++||+|+||++++.        ++++.+.+... ...+++.+.|.+
T Consensus       235 ~SK~~~~~GlRvG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a  277 (388)
T d1j32a_         235 FAKTYAMTGWRVGFLAGPV--------PLVKAATKIQGHSTSNVCTFAQYG  277 (388)
T ss_dssp             STTTTTCTTTCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHH
T ss_pred             ChhhhhcchhHeEEEEECH--------HHHHHHHHhhhhccccccHHHHHH
Confidence            9999999999999999743        47777766543 455677777765

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-46  Score=340.12  Aligned_cols=268  Identities=25%  Similarity=0.406  Sum_probs=233.3

Q ss_pred             cchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           13 DKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      .+.+.+..+++.|+++.+...+      .+++|+|+.|+|+    +++|+.+++++.++++++ ..+|++..|.++||++
T Consensus         2 ~s~~~~~~~~s~ir~~~~~~~~------~~dvi~l~~g~p~----~~~p~~v~~~~~~a~~~~-~~~Y~~~~G~~~lr~a   70 (388)
T d1gdea_           2 LSDRLELVSASEIRKLFDIAAG------MKDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREA   70 (388)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHH------CTTCEECCCCSCC----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred             hhhhhhhCCccHHHHHHHHHhC------CCCeEECCCCCCC----CCCCHHHHHHHHHHHhcC-ccCCCCCcCCHHHHHH
Confidence            3567888899999999875443      5789999999964    788999999999998764 3489999999999999


Q ss_pred             HHHHHhhhCCC-CCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           93 IADYLSRDLPY-KLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        93 ia~~l~~~~~~-~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      +|+|+.+.++. ...+++|++|+|+++++..++.+++++||+|++++|+|..|...++..|.+++.+++..+++|.+|++
T Consensus        71 ia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  150 (388)
T d1gdea_          71 IAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVD  150 (388)
T ss_dssp             HHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHH
T ss_pred             HHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHH
Confidence            99999875543 45677899999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC-CCCEEEEecC
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS-IVPVITLGSI  250 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~  250 (301)
                      +|++.++++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++..+.. .+++|+++||
T Consensus       151 ~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  230 (388)
T d1gdea_         151 ELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGF  230 (388)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEES
T ss_pred             HHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCC
Confidence            999999989999999999999999999999999999999999999999999999998777777766654 3579999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.|++||+|+||+++++        +++.++..... ...+++.+.|.+
T Consensus       231 SK~~~~~GlR~G~ii~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  272 (388)
T d1gdea_         231 SKTFAMTGWRLGFVAAPS--------WIIERMVKFQMYNATCPVTFIQYA  272 (388)
T ss_dssp             TTTTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHH
T ss_pred             hhhccCccccEEEEEeec--------cchhhhhhccccccccccccchhh
Confidence            999999999999999854        46667666543 345666666654

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.9e-46  Score=335.85  Aligned_cols=281  Identities=26%  Similarity=0.498  Sum_probs=230.9

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARR   91 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~   91 (301)
                      +.+++.... ...|+++... ..++. +.+.++|+|+.|+|... +|++|+.+++++.++++++ .++|++..|.++||+
T Consensus         3 ~~s~r~~~~-~~~ir~i~~~-a~~l~-~~G~~vi~l~~G~P~~~-df~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~   77 (395)
T d1xi9a_           3 RASKRALSV-EYAIRDVVLP-ARELE-KKGIKVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRK   77 (395)
T ss_dssp             CCCHHHHTC-CC-------C-HHHHH-HTTCCCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHH
T ss_pred             cchhccccC-cHHHHHHHHH-HHHHH-HCCCCeEECCCCCCCCC-CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHH
Confidence            345666665 5689998753 33343 34789999999998542 5889999999999998764 347999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHH
Q 022213           92 AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLD  171 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (301)
                      ++++++.+++|..+++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|.+++.++...+++|.+|++
T Consensus        78 aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~  157 (395)
T d1xi9a_          78 AIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDID  157 (395)
T ss_dssp             HHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHH
T ss_pred             HHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887888999999


Q ss_pred             HHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          172 AVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       172 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      ++++.+.++++++++++||||||.+++.+++++|+++|++|+++||+|++|.++.|++... +........++|+++|||
T Consensus       158 ~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~vi~~~S~S  236 (395)
T d1xi9a_         158 DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLTKDVPVIVMNGLS  236 (395)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHCSSSCEEEEEEST
T ss_pred             HHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccccc-chhhcCCCCCEEEEeCcc
Confidence            9999998899999999999999999999999999999999999999999999999875443 333445567899999999


Q ss_pred             ccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccccC
Q 022213          252 KRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVCE  300 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  300 (301)
                      |.|++||+|+||++++++....  ..+.+..........+++.++|.++
T Consensus       237 K~~~~~GlRvG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~  283 (395)
T d1xi9a_         237 KVYFATGWRLGYMYFVDPENKL--SEVREAIDRLARIRLCPNTPAQFAA  283 (395)
T ss_dssp             TTTCCGGGCCEEEEEECTTCTT--HHHHHHHHHHHHHTCCSCSHHHHHH
T ss_pred             hhcccchhhcEeeEecCHHHHH--HHHHHHHHHhhcCCCCcCHHHHHHH
Confidence            9999999999999887765433  1233333333445567888888753

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.3e-44  Score=329.52  Aligned_cols=284  Identities=27%  Similarity=0.553  Sum_probs=234.5

Q ss_pred             cccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHH
Q 022213            9 WGFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPP   88 (301)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~   88 (301)
                      |+.+.+...+ ..-++|+.+.+.+ +  ....+.++|+|+.|+|+..+.+++++.+.+++.+.+......+|++..|.++
T Consensus         1 ~~~~~~~~~~-~~~~pir~~~~~~-~--~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~   76 (412)
T d1bw0a_           1 WDVSMSNHAG-LVFNPIRTVSDNA-K--PSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPE   76 (412)
T ss_dssp             CCCCCCHHHH-TCCCHHHHHHHTC-C--CCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHH
T ss_pred             CCCChhhccc-CCccHHHHHHHhc-C--CCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHH
Confidence            8878877755 4467888877643 1  1234568999999999866666777888899988888777778999999999


Q ss_pred             HHHHHHHHHhhhC------CCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           89 ARRAIADYLSRDL------PYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        89 lr~~ia~~l~~~~------~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      ||+++|+|+.+++      +..+++++|++|+|+++++..++++++++||+|++++|+|..|...++..|.+++.+++..
T Consensus        77 LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~  156 (412)
T d1bw0a_          77 AREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP  156 (412)
T ss_dssp             HHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG
T ss_pred             HHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCcccccccccc
Confidence            9999999998864      3457889999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc----cc
Q 022213          163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG----LF  238 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~----~~  238 (301)
                      +++|..+++.+++...++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.+..    ..
T Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~  236 (412)
T d1bw0a_         157 ENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF  236 (412)
T ss_dssp             GGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS
T ss_pred             ccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccc
Confidence            88899999999999988999999999999999999999999999999999999999999999999865443322    22


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccc
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQV  298 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~  298 (301)
                      ....++++++|+||.|+++|+|+||++++++...  .+.++...........+++.+.|.
T Consensus       237 ~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (412)
T d1bw0a_         237 ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGN--GPSFLEGLKRVGMLVCGPCTVVQA  294 (412)
T ss_dssp             CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCS--CHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             ccccccccccccCccCccCCCCcccccccchhhc--chhhhhhhccccccccCCchhhhh
Confidence            3345689999999999999999999999875322  234555555554444444444443

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=1.7e-43  Score=322.74  Aligned_cols=270  Identities=23%  Similarity=0.384  Sum_probs=232.1

Q ss_pred             cccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC--CCCCCCCCCCHH
Q 022213           11 FEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK--FNCYATNSGIPP   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~   88 (301)
                      +..+.+.+..+++.+.++.+...       ..++|||+.|+|+    +++|+.+++++.+++++..  .++|++..|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~I~L~~G~Pd----~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~   70 (418)
T d2r5ea1           2 FDLPKRYQGSTKSVWVEYIQLAA-------QYKPLNLGQGFPD----YHAPKYALNALAAAANSPDPLANQYTRGFGHPR   70 (418)
T ss_dssp             CCCCGGGTTCCCCHHHHHHHHHH-------HHCCEECSSSCCS----SCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHH
T ss_pred             CchhhhhcCCCCCHHHHHHHHhc-------CCCCEEccCCCCC----CCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHH
Confidence            45677888888888888876433       2478999999964    7788999999999987543  457999999999


Q ss_pred             HHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCC---
Q 022213           89 ARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPER---  164 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~---  164 (301)
                      ||++||+++.+++|..+++ ++|++|+|+++|+..++++++++||.|++++|+|+.|...+...|.+++.+++.++.   
T Consensus        71 lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  150 (418)
T d2r5ea1          71 LVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGG  150 (418)
T ss_dssp             HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSS
T ss_pred             HHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEeccccccc
Confidence            9999999999988888885 799999999999999999999999999999999999999999999999999886543   


Q ss_pred             -----CCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccC
Q 022213          165 -----NWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       165 -----~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                           .+..+.+++......+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++....++..+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~  230 (418)
T d2r5ea1         151 TISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLP  230 (418)
T ss_dssp             CEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             chhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccc
Confidence                 256788888888888899999999999999999999999999999999999999999999999876666665554


Q ss_pred             C-CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          240 S-IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       240 ~-~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      . ..+++++.|+||.+++||+|+||+++++        ++++.+.+... ...+++++.|.+
T Consensus       231 ~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~--------~~i~~~~~~~~~~~~~~~~~~q~a  284 (418)
T d2r5ea1         231 GMWERTITIGSAGKTFSLTGWKIGWAYGPE--------ALLKNLQMVHQNCVYTCATPIQEA  284 (418)
T ss_dssp             TTGGGEEEEEEHHHHTTCGGGCCEEEESCH--------HHHHHHHHHHTTTTCSCCHHHHHH
T ss_pred             cccceeeeeecCCccccCCCcccccccccc--------hhhhhhhhcccccccccccchhhh
Confidence            3 4689999999999999999999999854        57788877654 455677777754

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3e-43  Score=316.53  Aligned_cols=258  Identities=24%  Similarity=0.370  Sum_probs=226.5

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +++....+.+.+..+.+...+ +. +.++++|+|+.|+|+    +++|+.+.+++.+.+.++. .+|++..|.++||+++
T Consensus         2 ~~r~~~~~~~~~~~~~~~a~~-~~-~~G~~vI~l~~G~p~----~~~p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~ai   74 (375)
T d1o4sa_           2 SRRISEIPISKTMELDAKAKA-LI-KKGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELREGI   74 (375)
T ss_dssp             CHHHHHSCCCSSHHHHHHHHH-HH-HTTCCCEECCCSSCS----SCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHH
T ss_pred             chhhhhCCCCHHHHHHHHHHH-HH-HCCCCeEECCCcCCC----CCCCHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHHH
Confidence            567788888888887654433 32 247889999999964    7788999999999887654 4799999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++++.+.++...++++|++|+|+++++..++++++++||.|++++|+|+.|.......+.....++....+++.++.+.+
T Consensus        75 a~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (375)
T d1o4sa_          75 AKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEV  154 (375)
T ss_dssp             HHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHH
T ss_pred             HhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHH
Confidence            99999988989999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      +.....+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++......+...+..+++|+++|+||.
T Consensus       155 ~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  234 (375)
T d1o4sa_         155 EGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKS  234 (375)
T ss_dssp             HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTT
T ss_pred             HHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhh
Confidence            99888889999999999999999999999999999999999999999999999877666555555666799999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      |++||+|+||+++++        +.++.+....
T Consensus       235 ~~l~G~R~G~~~~~~--------~~~~~~~~~~  259 (375)
T d1o4sa_         235 HSMTGWRVGYLISSE--------KVATAVSKIQ  259 (375)
T ss_dssp             TTCGGGCCEEEECCH--------HHHHHHHHHH
T ss_pred             ccCCccccccccccc--------cchhhhhhhh
Confidence            999999999999854        3556555543

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-43  Score=318.18  Aligned_cols=268  Identities=24%  Similarity=0.384  Sum_probs=229.8

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-FNCYATNSGIPPARRA   92 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~   92 (301)
                      .++.+..+.++..++.+.. .      ++++|+|++|+|+    +++|+.+.+++.++++++. .++|++..|.++||++
T Consensus         4 ~~r~~~~~~~~~~~~~~~~-~------~~dvI~l~~G~p~----~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LRea   72 (418)
T d1w7la_           4 ARRLDGIDYNPWVEFVKLA-S------EHDVVNLGQGFPD----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKI   72 (418)
T ss_dssp             CGGGTTCCCCTHHHHHHHH-H------TSCCEECCCCSCS----SCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHH
T ss_pred             CccccCCCCCHHHHHHHHh-C------CCCCEECCCCCCC----CCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHH
Confidence            4566677777877776532 1      6789999999964    7888999999999987653 4579999999999999


Q ss_pred             HHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC---------
Q 022213           93 IADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP---------  162 (301)
Q Consensus        93 ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~---------  162 (301)
                      +++++.+.+|..+++ ++|++|+|+++++..++++++++||.|++++|+|+.|...+...|.+.+.++..+         
T Consensus        73 ia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~  152 (418)
T d1w7la_          73 LASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELG  152 (418)
T ss_dssp             HHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSE
T ss_pred             HHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccc
Confidence            999999988888875 6899999999999999999999999999999999999999999999988887654         


Q ss_pred             -CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          163 -ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       163 -~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                       +.++.+|.+++.....++++++++++||||||.+++.+++++|+++|+++++++|+|++|.++.|++..+.++..+...
T Consensus       153 ~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~  232 (418)
T d1w7la_         153 SSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM  232 (418)
T ss_dssp             EGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred             cccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc
Confidence             2345678888888888888999999999999999999999999999999999999999999999988777777776543


Q ss_pred             -CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCcccccccC
Q 022213          242 -VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       242 -~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                       ++++++.|+||.+++||+|+||+++++        +++.++++... ...+++++.|.++
T Consensus       233 ~~~~i~~~S~SK~~~~pG~RvG~~v~~~--------~~~~~l~~~~~~~~~~~~~~~q~~~  285 (418)
T d1w7la_         233 WERTLTIGSAGKTFSATGWKVGWVLGPD--------HIMKHLRTVHQNSVFHCPTQSQAAV  285 (418)
T ss_dssp             GGGEEEEEEHHHHTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTSCCCHHHHHHH
T ss_pred             ccccceecccCccccCCCCcccccccch--------hhhhhhccccccccccccchhhHHH
Confidence             579999999999999999999999854        47788877754 3557778877653

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.5e-42  Score=313.44  Aligned_cols=268  Identities=21%  Similarity=0.304  Sum_probs=221.4

Q ss_pred             chhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           14 KQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      +.+++..++++|+++++.... . ++.+.++|+|+.|+|+    +++|+.+.+++.++..  ...+|++..|.++||+++
T Consensus         2 ~~r~~~~~~~~i~~l~~~a~~-~-~~~g~~vi~l~~G~p~----~~~p~~~~~al~~~~~--~~~~Y~~~~G~~~LR~ai   73 (389)
T d2gb3a1           2 SDRVLLTEESPIRKLVPFAEM-A-KKRGVRIHHLNIGQPD----LKTPEVFFERIYENKP--EVVYYSHSAGIWELREAF   73 (389)
T ss_dssp             CHHHHSCCCCTTGGGHHHHHH-H-HHTTCEEEECSSCCCC----SCCCTHHHHHHHHTCC--SSCCCCCTTCCHHHHHHH
T ss_pred             ChhhhcCCCCHHHHHHHHHHH-H-HHcCCCEEECCCCCCC----CCCCHHHHHHHHhcCC--CCCCCCCCcCCHHHHHHH
Confidence            567888999999998764332 2 2347899999999974    7788888888876532  456899999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++|+.+.+|+.+++++|++|+|+++++..++.+++++||.|++++|+|..+...+...|.....++...... ..+.+.+
T Consensus        74 a~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~  152 (389)
T d2gb3a1          74 ASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEG-FAIPQNL  152 (389)
T ss_dssp             HHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGT-SCCCTTG
T ss_pred             HHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCccccccccccccc-cchhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999888754433 3455666


Q ss_pred             HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCccc
Q 022213          174 EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKR  253 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~  253 (301)
                      .....++++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.+++.......  ...++++++.|+||.
T Consensus       153 ~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~--~~~~~~~v~~s~sK~  230 (389)
T d2gb3a1         153 ESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS--IESDKVVVIDSVSKK  230 (389)
T ss_dssp             GGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG--SCCTTEEEEEESTTT
T ss_pred             hhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccc--ccccccccccccccc
Confidence            777777889999999999999999999999999999999999999999999998765443332  233578999999999


Q ss_pred             CCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          254 WLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       254 ~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      +++||+|+||+++++.       .++..+....+...+++.+.|.+
T Consensus       231 ~~~~GlRiG~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~  269 (389)
T d2gb3a1         231 FSACGARVGCLITRNE-------ELISHAMKLAQGRLAPPLLEQIG  269 (389)
T ss_dssp             TTCGGGCCEEEECSCH-------HHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             ccCcccceeeeeccch-------hHHHHHhhhhhcccccccccccc
Confidence            9999999999998652       35555555554444555555543

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=2.2e-41  Score=307.11  Aligned_cols=272  Identities=21%  Similarity=0.296  Sum_probs=222.1

Q ss_pred             ccccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCH
Q 022213           10 GFEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIP   87 (301)
Q Consensus        10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~   87 (301)
                      ....+++.+..+.+.|+++.+..       +.+++|+|+.|.|+  |...+.+.+.+++.+.++..  ...+|++..|.+
T Consensus         4 ~~~~~~~~~~~~~s~ire~~~~~-------~~~~~i~l~~G~P~--~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~   74 (403)
T d1wsta1           4 DSFFSEKAMLMKASEVRELLKLV-------ETSDVISLAGGLPA--PETFPVETIKKIAVEVLEEHADKALQYGTTKGFT   74 (403)
T ss_dssp             GGGCCHHHHHCCCHHHHHHHHHH-------TSSSCEECCCCCCC--GGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHh-------CCCCcEECCCCCCC--ccccCHHHHHHHHHHHHHhCcccccCCCCCcCCH
Confidence            45678889999999999997732       25789999999986  33445677778888777543  245799999999


Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      +||+++|+|+.+++|.++++++|++|+|+++++..++++++++||.|++++|+|..|...+...|.+++.++.+....+.
T Consensus        75 ~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  154 (403)
T d1wsta1          75 PLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRV  154 (403)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECH
T ss_pred             HHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCcc
Confidence            99999999999989989999999999999999999999999999999999999999999999999999999876543322


Q ss_pred             CCHHHHH-hh---cccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCC
Q 022213          168 VDLDAVE-AL---ADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       168 ~~~~~l~-~~---~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~  243 (301)
                      ....... ..   .+.....+++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....++...+...+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~  234 (403)
T d1wsta1         155 DLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGR  234 (403)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSC
T ss_pred             ccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCc
Confidence            2222111 11   1223456777999999999999999999999999999999999999999998887878877777789


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++++|+||.+ +||+|+||+++++        ++++++..... ...++++..|.+
T Consensus       235 ~i~~~S~SK~~-~~G~RiG~~i~~~--------~~i~~~~~~~~~~~~~~~~~~~~~  282 (403)
T d1wsta1         235 VIYLGTFSKIL-APGFRIGWVAAHP--------HLIRKMEIAKQSIDLCTNTFGQAI  282 (403)
T ss_dssp             EEEEEESTTTT-CGGGCCEEEEECH--------HHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             EEEEcccccee-cCcccccccccch--------HHHHHHHHHHhhhccccccchhhh
Confidence            99999999997 5999999999843        47777766543 344666666644

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=2e-41  Score=306.65  Aligned_cols=235  Identities=20%  Similarity=0.309  Sum_probs=202.5

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      .+.++|+|++|+|    +|++|+.+++++.++++.+. ++|+  .|..+||+++++|+++++|..+++++|++|+|++++
T Consensus        29 ~g~~vi~l~~g~p----df~~p~~v~~al~~~~~~~~-~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~a  101 (394)
T d1c7na_          29 VGNEVVPLSVADM----EFKNPPELIEGLKKYLDETV-LGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPA  101 (394)
T ss_dssp             CCTTCCCCCSSSC----SSCCCHHHHHHHHHHHHHCC-CSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred             cCCCeEEccCCCC----CCCCCHHHHHHHHHHHhCCC-cCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhh
Confidence            4789999999996    48899999999999987653 3675  478999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCC
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~  197 (301)
                      +..+++++++|||.|++++|.|.++.......|.+.+.++... +..+.+|.+.++..+. ++++++++++||||||.++
T Consensus       102 l~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~  181 (394)
T d1c7na_         102 VFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVW  181 (394)
T ss_dssp             HHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCC
T ss_pred             hhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceec
Confidence            9999999999999999999999999999999999988887643 3456688888887664 4688999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccc
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQK  275 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~  275 (301)
                      +.+++++|+++|++++++||+||+|.++.|++....+......  ..+++++.|+||.|+++|+|+||++++++      
T Consensus       182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~------  255 (394)
T d1c7na_         182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP------  255 (394)
T ss_dssp             CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH------
T ss_pred             cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccCh------
Confidence            9999999999999999999999999999998765555443322  35789999999999999999999998663      


Q ss_pred             hhHHHHHHhhhcc
Q 022213          276 SGIIDSIKDCLSI  288 (301)
Q Consensus       276 ~~~~~~~~~~~~~  288 (301)
                       .+.+.++.....
T Consensus       256 -~i~~~~~~~~~~  267 (394)
T d1c7na_         256 -DIRERFTKSRDA  267 (394)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -hhhhhhhhhhhh
Confidence             466666666543

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-40  Score=295.82  Aligned_cols=246  Identities=23%  Similarity=0.361  Sum_probs=213.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQA  119 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~a  119 (301)
                      +.++|||+.|+|+    +++|+.+++++.++++++ .++|++..|.++||+++|+|+++.+|...+++ +|++|+|++++
T Consensus        25 ~~~~i~l~~G~Pd----~~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~a   99 (382)
T d1u08a_          25 QHQAINLSQGFPD----FDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA   99 (382)
T ss_dssp             HTTCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred             cCCCEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHH
Confidence            4689999999974    778899999999988764 45899999999999999999999888888776 59999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          120 VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       120 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +..++++++++||.|++++|+|+.+...+...|.....++.. ..++..|+++++...+++++++++++||||||.+++.
T Consensus       100 l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~  178 (382)
T d1u08a_         100 LYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQ  178 (382)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhccCccEEEECCCCccccccccc
Confidence            999999999999999999999999999999999888877764 4567789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc-CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF-GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~-~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      +++++|+++|++++++++.|++|..+.+.+......... ...+++|++.|+||.+++||+|+||+++++        ++
T Consensus       179 ~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~--------~~  250 (382)
T d1u08a_         179 ADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--------PI  250 (382)
T ss_dssp             HHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--------HH
T ss_pred             ccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc--------hh
Confidence            999999999999999999999999988876544443333 233579999999999999999999999743        47


Q ss_pred             HHHHHhhhc-ccCCCcccccccC
Q 022213          279 IDSIKDCLS-IYSDIPTFIQVCE  300 (301)
Q Consensus       279 ~~~~~~~~~-~~~~~~~~~q~~~  300 (301)
                      +.++..... ...+++.+.|.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~q~a~  273 (382)
T d1u08a_         251 SAEIRKVHQYLTFSVNTPAQLAL  273 (382)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             HHHHHhhhccccccccccccccc
Confidence            777776654 4567888888764

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=9.6e-41  Score=302.82  Aligned_cols=248  Identities=14%  Similarity=0.135  Sum_probs=206.6

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCC---CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGD---PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~---p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      .+.+.|+++|+.+++...++    ..+++|||++|.   ++  +..+..+.++++..+....+..++|++..|+++||++
T Consensus         6 ~~~~~p~d~i~~~~~~~~~d----~~~~~InL~iG~~~d~~--~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~a   79 (401)
T d7aata_           6 HVEMGPPDPILGVTEAFKRD----TNSKKMNLGVGAYRDDN--GKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRA   79 (401)
T ss_dssp             TCCCCCCCHHHHHHHHHHHC----CCTTCEECCCCSCCCTT--SCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHH
T ss_pred             cCCCCCCChHHHHHHHHhCC----CCCCcEEccCCCCcCCC--CCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Confidence            35578899999998765442    356789999994   33  2345568899998888877666689999999999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEEcCCH-----HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213           93 IADYLSRDLPYKLSADDVYVTLGC-----KQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~t~g~-----~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      +++++.+.++....+++|+++.++     .+++..+++++++|||.|++++|+|+.|...++..|.+++.+++..++++.
T Consensus        80 ia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~  159 (401)
T d7aata_          80 SAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCS  159 (401)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTE
T ss_pred             HHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEecccccccc
Confidence            999999887777778888765443     357888889999999999999999999999999999999999998888888


Q ss_pred             CCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcc---ccCCC
Q 022213          168 VDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMG---LFGSI  241 (301)
Q Consensus       168 ~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~---~~~~~  241 (301)
                      .+.+.+.+.+.   ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+..   .....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~  239 (401)
T d7aata_         160 LDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQG  239 (401)
T ss_dssp             ECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             ccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhh
Confidence            99998887663   4678899999999999999999999999999999999999999999999764322221   11233


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .+++++.|+||.++++|+|+||++++..
T Consensus       240 ~~~~~~~s~sk~~~~~G~RiG~~~~~~~  267 (401)
T d7aata_         240 IDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             CCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             cccceeEeccccceeeccccceeecchH
Confidence            5679999999999999999999999765

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-40  Score=303.58  Aligned_cols=268  Identities=19%  Similarity=0.255  Sum_probs=219.9

Q ss_pred             cccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCCCCHH
Q 022213           11 FEDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG--KFNCYATNSGIPP   88 (301)
Q Consensus        11 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~   88 (301)
                      .++++..+...++.|+++.+.       +.++++|+|+.|.|+  |...+++.+.++++++++..  ...+|+++.|.++
T Consensus        14 ~~~s~~~~~~~~s~ir~~~~~-------~~~~~~I~l~~G~Pd--~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~   84 (420)
T d1vp4a_          14 GKISKIGQNMKSSIIREILKF-------AADKDAISFGGGVPD--PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPV   84 (420)
T ss_dssp             HHCCHHHHTCCCCCHHHHTTT-------TTSTTCEECCCCSCC--GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHH
T ss_pred             HHHhHHHHhCCCcHHHHHHHH-------hCCCCcEecCCcCCC--CccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHH
Confidence            356777788888999988651       247899999999986  33444567778877777643  2458999999999


Q ss_pred             HHHHHHHHHhhhCCCC-CCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCC
Q 022213           89 ARRAIADYLSRDLPYK-LSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWE  167 (301)
Q Consensus        89 lr~~ia~~l~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (301)
                      ||++||+|+.+++|.. +++++|++|+|+++++..++.+++++||.|++++|+|..|...++..|.+++.++.+..   +
T Consensus        85 LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~  161 (420)
T d1vp4a_          85 LKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---G  161 (420)
T ss_dssp             HHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---E
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc---c
Confidence            9999999999988875 78999999999999999999999999999999999999999999999999999987543   3


Q ss_pred             CCHHHHHhhcc---------cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          168 VDLDAVEALAD---------KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       168 ~~~~~l~~~~~---------~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                      ++++.++..+.         ..+.++++++||||||.+++.+++++|+++|++|++++|+||+|.++.|++....+....
T Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~  241 (420)
T d1vp4a_         162 MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI  241 (420)
T ss_dssp             ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH
T ss_pred             cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc
Confidence            67776654321         123355678999999999999999999999999999999999999999987766666666


Q ss_pred             CCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          239 GSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ...+++++++|+||.+ ++|+|+||+++++        ++++++.+... ...+++.+.|.+
T Consensus       242 ~~~~~~i~~~s~sk~~-~~G~RiG~~~~~~--------~~i~~l~~~~~~~~~~~~~~~q~~  294 (420)
T d1vp4a_         242 GGPERVVLLNTFSKVL-APGLRIGMVAGSK--------EFIRKIVQAKQSADLCSPAITHRL  294 (420)
T ss_dssp             HCTTTEEEEEESTTTT-CGGGCEEEEECCH--------HHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             ccccceeEEecccccc-ccccccccccccc--------hhhhhhhhhhhhccccCchhhhhh
Confidence            6667899999999984 6999999999743        58888877654 355677777754

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-40  Score=292.96  Aligned_cols=219  Identities=21%  Similarity=0.305  Sum_probs=196.0

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHH
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVI  123 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~  123 (301)
                      +|+|++|+|    +|++|+.+.+++.+.+..+.+ +|++..| .++|+++++++.+++|.++++++|++|+|+++++..+
T Consensus         1 ~~~~~~~~~----df~~p~~i~eal~~~~~~~~~-~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~   74 (361)
T d1d2fa_           1 LLPFTISDM----DFATAPCIIEALNQRLMHGVF-GYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL   74 (361)
T ss_dssp             CEECCSSSC----SSCCCHHHHHHHHHHHTTCCC-CCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred             CcCcCCCCC----CCCCCHHHHHHHHHHHhCCCC-CCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHH
Confidence            589999996    488999999999998876544 7998877 7899999999999999999999999999999999999


Q ss_pred             HHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHH
Q 022213          124 LSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHH  201 (301)
Q Consensus       124 ~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~  201 (301)
                      +.+++++||+|++++|+|..|...++..|.+++.++... .+++.+|++.++..+.+ +++++++++||||||.+++.++
T Consensus        75 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~  154 (361)
T d1d2fa_          75 IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDE  154 (361)
T ss_dssp             HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTH
T ss_pred             hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhh
Confidence            999999999999999999999999999999998888754 45567899999988854 7789999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          202 LQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       202 l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +++|+++|+++++++|+||+|.++.|++....++.... ..+++++.|+||.++++|+|+||++++++
T Consensus       155 ~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~~~  221 (361)
T d1d2fa_         155 LEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYGIIENS  221 (361)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred             hhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceeeecchh
Confidence            99999999999999999999999999876666665543 35789999999999999999999987653

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-38  Score=284.50  Aligned_cols=259  Identities=27%  Similarity=0.359  Sum_probs=213.1

Q ss_pred             ccchhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q 022213           12 EDKQEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARR   91 (301)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~   91 (301)
                      +.+.+....+.+-+.++.+ +..      ..++|||+.|+|+    +++|+.+.+++++++.+  ..+|+++.|..+||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-la~------~~~~I~ls~g~p~----~~~p~~i~~al~~~l~~--~~~Y~~~~G~~elr~   68 (368)
T d1v2da_           2 RLHPRTEAAKESIFPRMSG-LAQ------RLGAVNLGQGFPS----NPPPPFLLEAVRRALGR--QDQYAPPAGLPALRE   68 (368)
T ss_dssp             CCCGGGGGC---CHHHHHH-HHH------HHTCEECCCCSCS----SCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHH
T ss_pred             CCChhhhhcCCCHHHHHHH-Hhc------cCCCEEecCCCCC----CCCCHHHHHHHHHHhhc--ccCCCCCcCCHHHHH
Confidence            4566777777766666653 222      3478999999964    77889999999998763  358999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCH
Q 022213           92 AIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDL  170 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~  170 (301)
                      +||+++      ++++++|++|+|+++++..++.+++++||.|++++|+|..+...+...|.+++.++++. .+++.+|+
T Consensus        69 aiA~~~------~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  142 (368)
T d1v2da_          69 ALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDL  142 (368)
T ss_dssp             HHHHHH------TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCH
T ss_pred             HHHhhc------ccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCH
Confidence            999998      57899999999999999999999999999999999999999999999999998888743 35678999


Q ss_pred             HHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecC
Q 022213          171 DAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       171 ~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +.+++.++++++.+++++||||||.+++.+++++|+++|++|++++|+|++|..+.+........  ....++++++.|+
T Consensus       143 ~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  220 (368)
T d1v2da_         143 SALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR--EFAPERTFTVGSA  220 (368)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHH--HHCTTTEEEEEEH
T ss_pred             HHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccc--cccccccceeecc
Confidence            99999999999999999999999999999999999999999999999999999877654333222  2234567889999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ||.++++|+|+||+++++.        +++.+++... ...+++.+.|.+
T Consensus       221 sk~~~~~G~R~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~q~~  262 (368)
T d1v2da_         221 GKRLEATGYRVGWIVGPKE--------FMPRLAGMRQWTSFSAPTPLQAG  262 (368)
T ss_dssp             HHHTTCGGGCCEEEECCTT--------THHHHHHHHHHHTSSCCHHHHHH
T ss_pred             ccccccccccccccccccc--------ccchhhhhhhccccccccccccc
Confidence            9999999999999998653        5666666544 355677777754

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=1.8e-38  Score=290.16  Aligned_cols=246  Identities=21%  Similarity=0.361  Sum_probs=196.7

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcC----------CCCCCCCCCCCHHHHHHHHHHHhhhCCC--CCCC
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSG----------KFNCYATNSGIPPARRAIADYLSRDLPY--KLSA  107 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~----------~~~~Y~~~~g~~~lr~~ia~~l~~~~~~--~~~~  107 (301)
                      ++.++|+|+.+++.     .+.+.+.+.+.+.....          ...+|++..|.++||++||+|+++.++.  .+++
T Consensus        34 np~G~i~l~~aen~-----l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~  108 (428)
T d1iaya_          34 NPNGVIQMGLAENQ-----LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDP  108 (428)
T ss_dssp             STTSBEECSSCCCC-----SSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCT
T ss_pred             CCCceEEeecccCc-----cchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCCh
Confidence            45679999999853     23344544444321110          1236999999999999999999998774  4678


Q ss_pred             CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCceEEEeecCCCCCCCCCHHHHHhhc------ccC
Q 022213          108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR-KQVEVRHFDLLPERNWEVDLDAVEALA------DKN  180 (301)
Q Consensus       108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~------~~~  180 (301)
                      ++|++|+|++++++.++++++++||+|++++|+|..+...+.. .|++++++++...++|.+|.+.++..+      ..+
T Consensus       109 e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~  188 (428)
T d1iaya_         109 ERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIK  188 (428)
T ss_dssp             TSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             hhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCC
Confidence            9999999999999999999999999999999999999776664 589999999988888999999887643      235


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc--------CCCCCEEEEecCcc
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--------GSIVPVITLGSISK  252 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--------~~~~~vi~~~s~SK  252 (301)
                      ++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.++.++        ...+++++++||||
T Consensus       189 ~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK  268 (428)
T d1iaya_         189 VKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK  268 (428)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTT
T ss_pred             ceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCC
Confidence            6789999999999999999999999999999999999999999999987766665433        23357999999999


Q ss_pred             cCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCcccccc
Q 022213          253 RWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQV  298 (301)
Q Consensus       253 ~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~  298 (301)
                      .|+++|+|+||++++++       .+.+.++..... ...+...|.
T Consensus       269 ~~~~~GlRiG~~~~~~~-------~l~~~~~~~~~~-~~~~~~~~~  306 (428)
T d1iaya_         269 DMGLPGFRVGIIYSFND-------DVVNCARKMSSF-GLVSTQTQY  306 (428)
T ss_dssp             TSSCGGGCEEEEEESCH-------HHHHHHHHHHTT-SCCCHHHHH
T ss_pred             cccCCCccccccccccc-------chhhhhhhhhcc-ccccccccc
Confidence            99999999999998542       366666655443 334444543

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=1.7e-38  Score=290.54  Aligned_cols=246  Identities=19%  Similarity=0.342  Sum_probs=194.7

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHhhhCC--CCCCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS-----------GKFNCYATNSGIPPARRAIADYLSRDLP--YKLSA  107 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~  107 (301)
                      +.++|+|+.+++.    + +.+.+.+.+.+....           ..+.+|+++.|.++||+++|+|+++.++  +.+++
T Consensus        35 p~G~i~l~~~en~----l-~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~p  109 (431)
T d1m7ya_          35 TNGIIQMGLAENQ----L-CFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP  109 (431)
T ss_dssp             TTSBEECSSCCCC----S-CHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred             CCcEEEeeccccc----c-cHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCc
Confidence            4569999999854    2 234444444331100           0123699999999999999999999876  45678


Q ss_pred             CCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCceEEEeecCCCCCCCCCHHHHHhhccc------C
Q 022213          108 DDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR-KQVEVRHFDLLPERNWEVDLDAVEALADK------N  180 (301)
Q Consensus       108 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~  180 (301)
                      ++|++|+|++++++.+++++++|||.|++++|+|..+...+.. .|++++++++..+++|.++.+.+++.+.+      +
T Consensus       110 e~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~  189 (431)
T d1m7ya_         110 NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLR  189 (431)
T ss_dssp             GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCC
T ss_pred             ceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCc
Confidence            9999999999999999999999999999999999988777764 58999999998888899999998876642      5


Q ss_pred             ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC----------CCCEEEEecC
Q 022213          181 TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS----------IVPVITLGSI  250 (301)
Q Consensus       181 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~----------~~~vi~~~s~  250 (301)
                      ++++++++||||||.+++.+++++|+++|++++++||+||+|..+.|+++.+.++..+..          .+++|+++|+
T Consensus       190 ~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~  269 (431)
T d1m7ya_         190 VKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSL  269 (431)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEES
T ss_pred             ceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecC
Confidence            678999999999999999999999999999999999999999999998776666543321          2469999999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhcccCCCccccccc
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ||.|+++|+|+||+++++        +++.+.........+++...|.+
T Consensus       270 SK~~~~~G~RiG~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~  310 (431)
T d1m7ya_         270 SKDLGLPGFRVGAIYSND--------DMVVAAATKMSSFGLVSSQTQHL  310 (431)
T ss_dssp             SSSSCCGGGCEEEEEESC--------HHHHHHHHHHGGGSCCCHHHHHH
T ss_pred             cccccCCCCccceeccch--------hhhHHHHHHHhccccccccccch
Confidence            999999999999999854        24433333333334455555543

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-39  Score=292.39  Aligned_cols=277  Identities=17%  Similarity=0.132  Sum_probs=211.3

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSGIPPARRA   92 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~   92 (301)
                      +...|.++|+.+++.+.++    ..+++|||++|   +|..  ..+.++.++++........ ..+.|++..|+++||++
T Consensus         5 ~~~~~~dpi~~~~~~~~~d----~~~~kInL~iG~~~d~~g--~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~a   78 (397)
T d3tata_           5 VDAYAGDPILTLMERFKED----PRSDKVNLSIGLYYNEDG--IIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHA   78 (397)
T ss_dssp             CCCCCCCTTTTHHHHHHHS----CCSSCEECSCCSCCCTTS--SCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHhcC----CCCCcEEccCCCCcCCCC--CCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHH
Confidence            4456788999888755332    24567999999   4432  2455678888866544332 35579999999999999


Q ss_pred             HHHHHhhhCCCCCCCCCEEEcCCHHHH----HHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           93 IADYLSRDLPYKLSADDVYVTLGCKQA----VEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i~~t~g~~~a----l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      +++|+.+.++..+++++|+++.|++++    +.+++..+++|||.|++++|+|..|...++..|.+++.+++..+.++..
T Consensus        79 ia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~  158 (397)
T d3tata_          79 IAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV  158 (397)
T ss_dssp             HHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSC
T ss_pred             HHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhcccc
Confidence            999999888777788999888777664    5666667789999999999999999999999999999999988888888


Q ss_pred             CHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-ccc-cCCCCC
Q 022213          169 DLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MGL-FGSIVP  243 (301)
Q Consensus       169 ~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~~-~~~~~~  243 (301)
                      +.+.+.+.+.   ++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++....+ +.. .....+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  238 (397)
T d3tata_         159 RFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLP  238 (397)
T ss_dssp             CHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCC
T ss_pred             chHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCc
Confidence            9888777654   46678889999999999999999999999999999999999999999997533222 211 223457


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh-hcccCCCcccccccC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC-LSIYSDIPTFIQVCE  300 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~  300 (301)
                      +|++.|+||.++++|+|+||++++...... .......+... .....+++.+.|.++
T Consensus       239 ~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~  295 (397)
T d3tata_         239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEA-AGRVLGQLKATVRRNYSSPPNFGAQVV  295 (397)
T ss_dssp             CEECBCCHHHHTBTTTCCBCCEEECSSTTH-HHHHHHHHHHHTTTTTSSCCSHHHHHH
T ss_pred             eEEEecCcccccccCccccccccchhHHHH-HHHHHHHHHHHhhcccccccHHHHHHH
Confidence            899999999999999999999987653110 01111122222 223456677777653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-38  Score=284.72  Aligned_cols=248  Identities=19%  Similarity=0.160  Sum_probs=187.8

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRA   92 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~   92 (301)
                      ++...|+++|+.+.+.+.+    ...+++|||++|   +++  +..+.++.|++++.+..++...++|++..|+++||++
T Consensus         4 ~~~~~p~d~i~~~~~~~~~----d~~~~kInL~iG~~~d~~--g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~a   77 (396)
T d2q7wa1           4 NITAAPADPILGLADLFRA----DERPGKINLGIGVYKDET--GKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRC   77 (396)
T ss_dssp             TCCCCCC---------------------CEESSCCSCCCTT--SCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHH
T ss_pred             ccccCCCChHHHHHHHHhc----cCCCCcEEeeCCCccCCC--CCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHH
Confidence            3456889999988764432    224668999999   444  3356678899998888877777789999999999999


Q ss_pred             HHHHHhhhCCCCCCCCCE--EEcCCHHHHHHHHHHH--hcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCC
Q 022213           93 IADYLSRDLPYKLSADDV--YVTLGCKQAVEVILSV--LARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEV  168 (301)
Q Consensus        93 ia~~l~~~~~~~~~~~~i--~~t~g~~~al~~~~~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (301)
                      +++|+.++++....++.+  +++.|++.++..++..  .+++||.|++++|+|++|...++.+|.+++.++...+.++..
T Consensus        78 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~  157 (396)
T d2q7wa1          78 TQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTL  157 (396)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccccccccc
Confidence            999998877765555554  4577776666555544  468999999999999999999999999999999987777777


Q ss_pred             CHHHHHhhc---ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc-c-CCCCC
Q 022213          169 DLDAVEALA---DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL-F-GSIVP  243 (301)
Q Consensus       169 ~~~~l~~~~---~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~-~-~~~~~  243 (301)
                      +...+++..   .++++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.|++....+... . ....+
T Consensus       158 ~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  237 (396)
T d2q7wa1         158 DFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKE  237 (396)
T ss_dssp             CHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSC
T ss_pred             ccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccc
Confidence            777766644   346778889999999999999999999999999999999999999999997543322211 1 22356


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeCC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      ++++.|+||.|+++|+|+||++++..
T Consensus       238 ~~~~~s~sk~~~~~G~R~G~~~~~~~  263 (396)
T d2q7wa1         238 LIVASSYSKNFGLYNERVGACTLVAA  263 (396)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred             ccccccccccccccCCCccccccchh
Confidence            79999999999999999999999764

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=3.3e-37  Score=280.36  Aligned_cols=279  Identities=15%  Similarity=0.134  Sum_probs=208.0

Q ss_pred             hhhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCCCHHHH
Q 022213           15 QEHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSGIPPAR   90 (301)
Q Consensus        15 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr   90 (301)
                      .++...|+++|+.+.+...+    ...+++|||++|   +|+.  ..+.++.|+++.+....+. ..++|++..|.++||
T Consensus         6 ~~~~~~~~d~i~~~~~~~~~----d~~~~kInL~iG~~~d~~g--~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr   79 (412)
T d1yaaa_           6 NNIELLPPDALFGIKQRYGQ----DQRATKVDLGIGAYRDDNG--KPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLT   79 (412)
T ss_dssp             TTCCCCCCCTTHHHHHHHHT----CCCSSCEECSSCCCBCTTS--CBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred             hcCCcCCCChHHHHHHHHhc----CCCCCcEEeecCCCcCCCC--CCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHH
Confidence            45778999999998875543    234568999999   4542  2445578888765444332 356799999999999


Q ss_pred             HHHHHHHhhhCCCCCCCCCEEE--cCCHHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           91 RAIADYLSRDLPYKLSADDVYV--TLGCKQAVEVIL--SVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        91 ~~ia~~l~~~~~~~~~~~~i~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      +++++++.+.++.....+.+++  +.|+..++..++  ..++++||.|++++|+|..|...++..|.+++.+++..++++
T Consensus        80 ~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~  159 (412)
T d1yaaa_          80 SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK  159 (412)
T ss_dssp             HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTT
T ss_pred             HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccc
Confidence            9999999887665444555443  345555554443  344679999999999999999999999999999998777888


Q ss_pred             CCCHHHHHhhcc---cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCc------cc
Q 022213          167 EVDLDAVEALAD---KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPM------GL  237 (301)
Q Consensus       167 ~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~------~~  237 (301)
                      ..+.+.++..+.   ++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++....+.      ..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  239 (412)
T d1yaaa_         160 SLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK  239 (412)
T ss_dssp             EECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred             cccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhc
Confidence            889888887664   345678889999999999999999999999999999999999999999976433221      12


Q ss_pred             cCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHH----Hhh-hcccCCCcccccccC
Q 022213          238 FGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSI----KDC-LSIYSDIPTFIQVCE  300 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~q~~~  300 (301)
                      .....++|++.|+||.|+++|+|+||+++++..... ..+....+    ... ..+..+++.++|.++
T Consensus       240 ~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  306 (412)
T d1yaaa_         240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQ-NKTIKPAVTSQLAKIIRSEVSNPPAYGAKIV  306 (412)
T ss_dssp             TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTT-HHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             cccCCCeEEEEecCCccccCcCceEEEEEchhhhhh-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            344567999999999999999999999998753111 11112221    112 234567788888653

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=3.3e-37  Score=280.33  Aligned_cols=248  Identities=16%  Similarity=0.114  Sum_probs=192.5

Q ss_pred             hhhcCCcccHHHHHHHHHhhcccCCCCCeeeccCC---CCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHH
Q 022213           16 EHKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYG---DPTAFPCFRTAVEAEDAIVDAVRSG-KFNCYATNSGIPPARR   91 (301)
Q Consensus        16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g---~p~~~p~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~   91 (301)
                      .+.+.++++|+.+++.+.+    ...+++|||++|   +++  ...+.++.|+++.+....+. ..++|++..|+++||+
T Consensus         8 ~~~~~~~~~i~~l~~~~~~----d~~~~~Inl~iG~~~d~~--g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lre   81 (412)
T d1ajsa_           8 EVPQAQPVLVFKLIADFRE----DPDPRKVNLGVGAYRTDD--CQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT   81 (412)
T ss_dssp             TCCCCCCCHHHHHHHHHHT----CCCTTCEECCSCCCCCTT--SCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred             hCCcCCCChHHHHHHHHhc----CCCCCcEEeeCCCCcCCC--CCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHH
Confidence            3567888999998876543    235678999999   444  23456678888766554443 3557999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCCEE--EcCCHHHHHHHHHHHh-------cCCCCEEEEcCCCCcchHHHHHhcCceEEEee-cC
Q 022213           92 AIADYLSRDLPYKLSADDVY--VTLGCKQAVEVILSVL-------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFD-LL  161 (301)
Q Consensus        92 ~ia~~l~~~~~~~~~~~~i~--~t~g~~~al~~~~~~l-------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~-~~  161 (301)
                      ++++++.+.++..+..++++  .|.|++.++..+..++       .+|||.|++++|+|+.|...++..|.+.+.++ ..
T Consensus        82 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~  161 (412)
T d1ajsa_          82 CASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW  161 (412)
T ss_dssp             HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred             HHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccc
Confidence            99999988777666677654  4566666655554443       68999999999999999999999998866554 33


Q ss_pred             CCCCCCCCHHHHHhhc---ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC---c
Q 022213          162 PERNWEVDLDAVEALA---DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP---M  235 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~---~  235 (301)
                      .+.++..|.+.+++.+   .++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++.....   .
T Consensus       162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  241 (412)
T d1ajsa_         162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR  241 (412)
T ss_dssp             ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred             ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhh
Confidence            4556678888776654   456788899999999999999999999999999999999999999999997643222   1


Q ss_pred             cccCCCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          236 GLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       236 ~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .......+++++.|+||.++++|+|+||++++..
T Consensus       242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~  275 (412)
T d1ajsa_         242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK  275 (412)
T ss_dssp             HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             hhhhhcccccccccccccccCCCCCccccccchh
Confidence            1223345689999999999999999999998765

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.1e-36  Score=275.24  Aligned_cols=247  Identities=19%  Similarity=0.187  Sum_probs=194.9

Q ss_pred             hhcCCcccHHHHHHHHHhhcccCCCCCeeeccCCC---CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHH
Q 022213           17 HKAAPAVTVKTSLASIIDSVNKNDPRPVVPLGYGD---PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAI   93 (301)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~l~~g~---p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i   93 (301)
                      .+..++++|+.+++.+.++    ..+++|||++|.   ++  +..+.++.+.+++++.++....++|++..|+++||+++
T Consensus         5 ~~~~~~d~i~~l~~~~~~d----~~~~~InL~iG~~~d~~--g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~ai   78 (394)
T d2ay1a_           5 LKPQAPDKILALMGEFRAD----PRQGKIDLGVGVYKDAT--GHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAM   78 (394)
T ss_dssp             CCCCCCCSHHHHHHHHHHC----CCTTCEECCCCSCCCTT--SCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHhCC----CCCCCEEccCCCccCCC--CCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Confidence            4678889999988766432    356789999994   33  23456688999998888776666899999999999999


Q ss_pred             HHHHhhhCCCCCCCCCEEEcCC-HHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           94 ADYLSRDLPYKLSADDVYVTLG-CKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        94 a~~l~~~~~~~~~~~~i~~t~g-~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      ++++.+..+.....+.+++++| +..++...+..+.++||.|++++|+|..|...++.+|.+++.+++..+..+..+.+.
T Consensus        79 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~  158 (394)
T d2ay1a_          79 GELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             HHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence            9999876554433434433333 244466666677799999999999999999999999999999998777677677666


Q ss_pred             HHhhc---ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCcccc--CCCCCEEEE
Q 022213          173 VEALA---DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLF--GSIVPVITL  247 (301)
Q Consensus       173 l~~~~---~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~vi~~  247 (301)
                      +++..   .++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+....  ....+++++
T Consensus       159 ~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T d2ay1a_         159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA  238 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred             HHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccc
Confidence            66544   3456778889999999999999999999999999999999999999999975433222211  233468999


Q ss_pred             ecCcccCCCCcceeEEEEeeCC
Q 022213          248 GSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       248 ~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      .|+||.++++|+|+||++++..
T Consensus       239 ~s~sk~~~~~G~R~G~~~~~~~  260 (394)
T d2ay1a_         239 ASCSKNFGIYRERTGCLLALCA  260 (394)
T ss_dssp             EECTTTTTCGGGCEEEEEEECS
T ss_pred             ccccccccCCcccccchhhchh
Confidence            9999999999999999998765

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.9e-34  Score=256.93  Aligned_cols=233  Identities=18%  Similarity=0.315  Sum_probs=188.0

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      +.++|+|+.|.+    .+++|+.+.+++.+...  ....|++ .+..+||+++|+++      ++++++|++|+|+++++
T Consensus        21 p~~~idls~~~n----p~~~p~~~~~a~~~~~~--~~~~Yp~-~~~~~Lr~aia~~~------~v~~~~I~~~~g~~~~~   87 (355)
T d1lc5a_          21 PDQLLDFSANIN----PLGMPVSVKRALIDNLD--CIERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESI   87 (355)
T ss_dssp             GGGSEECSSCCC----TTCCCHHHHHHHHHTGG--GGGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHH
T ss_pred             hhheEEccCCCC----CCCCCHHHHHHHHHHHH--HhccCCC-CChHHHHHHHHHHh------CCCHHHEEecccHHHHH
Confidence            457999999964    26678889999888765  3456865 46799999999998      57889999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                      ..++..+.  |+.+++..|.|..|.......+.+++.+++..++++.++ +.+.+.+.++++++++++||||||.+++.+
T Consensus        88 ~~~~~~~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e  164 (355)
T d1lc5a_          88 FTVASGLK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERP  164 (355)
T ss_dssp             HHHHHHHC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhhhc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhh
Confidence            98887763  566777889999998899999999999999877777776 456667778899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHH
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIID  280 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~  280 (301)
                      ++++|+++|++|++++|+||+|.++.+.+.....  .....+++|+++||||.|++||+|+||+++++.       .+.+
T Consensus       165 ~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~-------~~~~  235 (355)
T d1lc5a_         165 LLQAIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD-------AAMA  235 (355)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG--GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH-------HHHH
T ss_pred             hhhhhhhhccccccccccccceeeeeeecccccc--cccccccceeecccccccccccccccceeccch-------hhhH
Confidence            9999999999999999999999998876544332  233446899999999999999999999998652       2445


Q ss_pred             HHHhhhcccCCCccccccc
Q 022213          281 SIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       281 ~~~~~~~~~~~~~~~~q~~  299 (301)
                      .++.... ..+.+.++|.+
T Consensus       236 ~~~~~~~-~~~~~~~~~~~  253 (355)
T d1lc5a_         236 RMRRQQM-PWSVNALAALA  253 (355)
T ss_dssp             HHHHHSC-TTCSCHHHHHH
T ss_pred             HHHhhcC-Ccccccccccc
Confidence            5554433 34556666654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.7e-33  Score=247.52  Aligned_cols=226  Identities=19%  Similarity=0.253  Sum_probs=179.2

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      +..++++|.|+.|++    .+++|+.+.+++.+.+....+..| |..|..+||+++|+|+.+.   .+++++|++|+|++
T Consensus        15 ~~~~~d~~~l~~~en----p~~~p~~i~~~~~~~~~~~~~~~y-p~~g~~~Lr~aia~~~~~~---~v~~d~I~it~G~~   86 (334)
T d2f8ja1          15 ETEKRDKTYLALNEN----PFPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSVGNGAD   86 (334)
T ss_dssp             CCCCCCSEECSSCCC----SSCCCHHHHHHHHHHCCTTGGGSC-CCSSCHHHHHHHHHHHTCS---SCCGGGEEEEEHHH
T ss_pred             cccCCCceEEECCCC----CCCCCHHHHHHHHHHhhcchhcCC-CCCCcHHHHHHHHHHhccc---CCCcceEEecCcch
Confidence            345789999999974    267889999999888876655445 5579999999999999663   36889999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCC
Q 022213          118 QAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVF  197 (301)
Q Consensus       118 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  197 (301)
                      ++++++++    +||+|++++|+|..|...++..|++++.++++.+..  .+     +...++++++++++||||||.++
T Consensus        87 ~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG~~~  155 (334)
T d2f8ja1          87 EIIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTGHVF  155 (334)
T ss_dssp             HHHHHHHH----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTCCCC
T ss_pred             hHHHHHhh----hccccccccccccccccchhccCCcccccccccccc--cc-----ccccccceEEEecccccccceee
Confidence            99988765    469999999999999999999999999999865432  11     22345788999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchh
Q 022213          198 TYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSG  277 (301)
Q Consensus       198 ~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~  277 (301)
                      +++++++    +.++++++|+||+|.++.+....    ......+++|+++|+||+++++|+|+||++++.        +
T Consensus       156 s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~~----~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~--------~  219 (334)
T d2f8ja1         156 EREEIER----ILKTGAFVALDEAYYEFHGESYV----DFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--------K  219 (334)
T ss_dssp             CHHHHHH----HHTTTCEEEEECTTGGGTCCCCG----GGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH--------H
T ss_pred             cHHHhhc----cccceeEEeecccchhhcccccc----cccccCceEEEEecCccccchhhhhhhhcccch--------H
Confidence            9766654    34679999999999876543321    122344689999999999999999999999843        5


Q ss_pred             HHHHHHhhhcccCCCccccccc
Q 022213          278 IIDSIKDCLSIYSDIPTFIQVC  299 (301)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~q~~  299 (301)
                      ++.+++.... ..+.+.++|.+
T Consensus       220 ~i~~l~~~~~-~~~~s~~~~~~  240 (334)
T d2f8ja1         220 FIDAYNRVRL-PFNVSYVSQMF  240 (334)
T ss_dssp             HHHHHHHHSC-TTCSCHHHHHH
T ss_pred             HHHHHHHhhc-ccccchhhhhh
Confidence            8888887765 34567777764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-32  Score=242.58  Aligned_cols=224  Identities=21%  Similarity=0.361  Sum_probs=178.4

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQA  119 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~a  119 (301)
                      ...+.|.|+.+++   | +++++.+        ....+..|+++ +..+||+++|+++      ++++++|++|+|++++
T Consensus        25 ~~~~~i~L~~ne~---p-~~~~~~~--------~~~~l~rYPd~-~~~~Lr~~ia~~~------gv~pe~I~it~Gs~ea   85 (354)
T d1fg7a_          25 GGNGDVWLNANEY---P-TAVEFQL--------TQQTLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEG   85 (354)
T ss_dssp             TTTCSEECSSCCC---S-SCCCCCC--------CCCCTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHH
T ss_pred             CCCCCEEeeCCCC---C-CCCCHHH--------HHHHHhcCCCC-cHHHHHHHHHHHh------CCChHHeeeccCchHH
Confidence            3567899999863   2 2333221        22345579764 5689999999998      5789999999999999


Q ss_pred             HHHHHHHhcCCCC-EEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCC
Q 022213          120 VEVILSVLARPGA-NVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFT  198 (301)
Q Consensus       120 l~~~~~~l~~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  198 (301)
                      +..+++++++||| .|+++.|+|..|...++..|.+++.++.  .++|.+|+++++..+. +++++++++||||||.+++
T Consensus        86 i~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~  162 (354)
T d1fg7a_          86 IELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLIN  162 (354)
T ss_dssp             HHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhccc-ccceeeccCCCccceeEee
Confidence            9999999999998 5889999999999999999999988876  3578899999998774 6889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhH
Q 022213          199 YHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGI  278 (301)
Q Consensus       199 ~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~  278 (301)
                      .++++.+.+.++ ++.++|+||+|.++.++....   .......++++++||||.|+++|+|+||++++.        ++
T Consensus       163 ~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~--------~~  230 (354)
T d1fg7a_         163 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA---GWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--------EV  230 (354)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--------HH
T ss_pred             eccccccccccc-ccccccccccchhhccccccc---hhhcccccceEEeCCccccCCCccccccccccc--------hh
Confidence            999999988775 577888899998877543221   123345688999999999999999999999743        58


Q ss_pred             HHHHHhhhcccCCCcccccc
Q 022213          279 IDSIKDCLSIYSDIPTFIQV  298 (301)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~q~  298 (301)
                      ++++.+.... .+.+.+.|.
T Consensus       231 i~~l~~~~~~-~~~~~~~~~  249 (354)
T d1fg7a_         231 INLLMKVIAP-YPLSTPVAD  249 (354)
T ss_dssp             HHHHHHHSCS-SCSCHHHHH
T ss_pred             hhhhhhhcCc-cchhhHHHH
Confidence            8888776653 244555553

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.96  E-value=3.1e-30  Score=233.54  Aligned_cols=223  Identities=16%  Similarity=0.152  Sum_probs=168.3

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHH--hcCCCCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAV--RSGKFNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      +.-++++++|+|.++    .|-+...+...++  ...+.+.|....+    .++|+++|+++.....+...+..+|++++
T Consensus        55 ~~~~~~~~~gdp~~~----~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~  130 (425)
T d2hoxa1          55 QGCSADVASGDGLFL----EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (425)
T ss_dssp             TTCCEECCSCCCGGG----HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCceeeCCCCCCCCC----CHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECC
Confidence            455899999998643    2223333333322  2233335554322    27999999999887777666777899999


Q ss_pred             CHHHHHHHHHHHh--------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213          115 GCKQAVEVILSVL--------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       115 g~~~al~~~~~~l--------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      |++|+|++++++|        ++|||+|+++.|+|+.|....+..+.+...        |.+|.+.+++.++.+++++++
T Consensus       131 Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~--------~~~D~~~~~~~~~~~~~ii~l  202 (425)
T d2hoxa1         131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMV  202 (425)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEE
T ss_pred             CHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc--------cCCCHHHHHhhCCCCceEEEE
Confidence            9999999999999        468999999999999999988888765443        456788888888888999999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++||||||.+..          +..+++.+|+||+|.+..|.     ++.  ...+++|+++||||.|+++|+|+||+++
T Consensus       203 ~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-----~~~--~~~~~~Ivl~S~SK~fglaGlRiGw~i~  265 (425)
T d2hoxa1         203 TSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-----PIK--YKADEDILLFTMSKFTGHSGSRFGWALI  265 (425)
T ss_dssp             ESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-----CCC--SCBCCSEEEEEHHHHTSCGGGCCEEEEE
T ss_pred             ECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-----chh--hhcCCeEEEEeCHHhccCcchheeeEEe
Confidence            999999998743          33568999999999764442     222  2235789999999999999999999988


Q ss_pred             eCCCCcccchhHHHHHHhhhc-ccCCCccccccc
Q 022213          267 NDPNGIFQKSGIIDSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      +++       .+.++++.+.. ...+++.++|.+
T Consensus       266 ~~~-------~i~~~~~~~~~~~~~~vs~~~Q~a  292 (425)
T d2hoxa1         266 KDE-------SVYNNLLNYMTKNTEGTPRETQLR  292 (425)
T ss_dssp             CCH-------HHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             CCH-------HHHHHHHHhhccCcccCCHHHHHH
Confidence            653       47777777655 355788898865

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=3.4e-25  Score=196.69  Aligned_cols=163  Identities=16%  Similarity=0.206  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNW  166 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~  166 (301)
                      ..+++.+|+|+        ..|++++|+|+++|+.+++.+++++||.|+++.++|.+....++..|.+++.+|++...++
T Consensus        50 ~~~~~~~A~~~--------g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~  121 (364)
T d2e7ja1          50 DFIHNQLPKFL--------GCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDY  121 (364)
T ss_dssp             HHHHTHHHHHT--------TSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTC
T ss_pred             HHHHHHHHHHh--------CcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeecccccc
Confidence            45788888887        3578999999999999999999999999999999999887888899999999998766678


Q ss_pred             CCCHHHHHhhcccC-----ccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          167 EVDLDAVEALADKN-----TAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       167 ~~~~~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                      .+|++.+++.+++.     ++.+++++|+||||.+.+   +++|+++|++||+++++|++|+...+    +..+..++-+
T Consensus       122 ~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~----~~~~~~~g~D  194 (364)
T d2e7ja1         122 AITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEIGAD  194 (364)
T ss_dssp             CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHHTCS
T ss_pred             ccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh----hhcccccccc
Confidence            89999999988543     346888999999999999   88999999999999999999975332    2223333222


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         ++++|++|.++.+| ++||+++++
T Consensus       195 ---~~~~S~~K~~~~~g-~~g~l~~~~  217 (364)
T d2e7ja1         195 ---FIVGSGHKSMAASG-PIGVMGMKE  217 (364)
T ss_dssp             ---EEEEEHHHHSSCCS-SCEEEEECT
T ss_pred             ---eeeeccccccCCCC-CEEEEEECH
Confidence               78889999988877 799999865

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=7.4e-24  Score=188.74  Aligned_cols=218  Identities=14%  Similarity=0.071  Sum_probs=158.1

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ...++++.....    .++.++...+.    +..    .+++..+..++++..++.+..     ...+++++|+|+++|+
T Consensus        19 ~~~i~~~~gl~~----~~~~~~~~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~   81 (366)
T d2aeua1          19 RDALYDLSGLSG----GFLIDEKDKAL----LNT----YIGSSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAI   81 (366)
T ss_dssp             GGGCEECSSCCC----CCCCCHHHHHH----HTS----TTHHHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHH
T ss_pred             cchHhhhccCCC----CCCccHHHHHH----HHH----hcCchhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHH
Confidence            455788865543    24455444333    321    133333556788888877742     3457899999999999


Q ss_pred             HHHHHHhcCCCCEEEEc-CCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          121 EVILSVLARPGANVLLP-RPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      ..++.++.+++|.|+++ .|+|..+...++..|.+++  +.       -|++++++.++++++++++++|+||+  +++.
T Consensus        82 ~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~-------~d~e~l~~~i~~~tk~i~~~~p~n~~--~~~~  150 (366)
T d2aeua1          82 LATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES-------DKVGEILNKIDKDTLVIITGSTMDLK--VIEL  150 (366)
T ss_dssp             HHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE-------SCHHHHHTTCCTTEEEEEECBCTTSC--BCCH
T ss_pred             HHHHHHhCCCCEEEEecCCCcchhHHHHHHhcCCeEE--CC-------CCHHHHHHhcCCCceEEEEEecCCCC--cCCH
Confidence            99999987554545554 6899999999999998754  32       27999999999999999999999985  4677


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHH
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGII  279 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~  279 (301)
                      +++++|+++|++||+++|+|++|+...+...........+.   .++++|+||.  ++|+|+||++++.        +++
T Consensus       151 ~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~---di~~~S~sK~--~~g~~~G~i~~~~--------~~i  217 (366)
T d2aeua1         151 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGA---DLVVTSTDKL--MEGPRGGLLAGKK--------ELV  217 (366)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC---SEEEEETTSS--SSSCSCEEEEEEH--------HHH
T ss_pred             HHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCc---eEEEeccccc--ccccceeEEEecH--------HHH
Confidence            88999999999999999999999987664322222222222   2888999997  4689999999854        588


Q ss_pred             HHHHhhhc-ccCCCccccccc
Q 022213          280 DSIKDCLS-IYSDIPTFIQVC  299 (301)
Q Consensus       280 ~~~~~~~~-~~~~~~~~~q~~  299 (301)
                      ++++.... +..+++++.|.+
T Consensus       218 ~~~~~~~~~~g~~~~~~~~~a  238 (366)
T d2aeua1         218 DKIYIEGTKFGLEAQPPLLAG  238 (366)
T ss_dssp             HHHHHHHHTTTCBCCHHHHHH
T ss_pred             HHHHHHHhcccccCCHHHHHH
Confidence            88887754 445666666654

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.6e-21  Score=174.84  Aligned_cols=188  Identities=17%  Similarity=0.179  Sum_probs=147.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCC--C----------CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHH
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNS--G----------IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSV  126 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~--g----------~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~  126 (301)
                      +.++.+.+++.+.+....  .|+.+.  .          +.++|+.+|+++      ++++++|++|+|+|+++..++.+
T Consensus        13 p~~~~v~ea~~~~~~~~~--~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l------g~~~~~I~~~~~~t~~l~~~~~~   84 (391)
T d1p3wa_          13 PVDPRVAEKMMQFMTMDG--TFGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVFTSGATESDNLAIKG   84 (391)
T ss_dssp             CCCHHHHHHHHTTTSTTS--CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcc--ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHHHHhh
Confidence            567889999988876433  344321  1          336788899998      57889999999999999999887


Q ss_pred             hc----CCCCEEEEcCCCCcchHHH---HHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCH
Q 022213          127 LA----RPGANVLLPRPGWPYYEGI---AQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTY  199 (301)
Q Consensus       127 l~----~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  199 (301)
                      +.    ++||+|++.++.|+++...   ++..|+++..++.+.  ...+|++.+++++++++++|++++++||||.+++ 
T Consensus        85 ~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~-  161 (391)
T d1p3wa_          85 AANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD-  161 (391)
T ss_dssp             HHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCC-
T ss_pred             hhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECC-
Confidence            64    6999999999999976443   345699999998754  3458999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          200 HHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       200 ~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                        +++|+++|+++|+++++|.++....    .+..+..++.+   +++.|++|.+|.+|  +|+++++.
T Consensus       162 --~~~I~~~~~~~~~~~ivD~~~~~g~----~~~d~~~~~~D---~~~~s~~k~~g~~g--~g~~~~~~  219 (391)
T d1p3wa_         162 --IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQLKVD---LMSFSGHKIYGPKG--IGALYVRR  219 (391)
T ss_dssp             --HHHHHHHHHHHTCEEEEECTTTBTT----BCCCTTTSCCS---EEEEESTTTTSCSS--CEEEEECB
T ss_pred             --HHHHHHHhccCCcEEEEeeccccCC----ccccchhcccc---ccccccccccCCCc--eEEEEEec
Confidence              7889999999999999999998633    23333333332   78889999987777  46665544

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.82  E-value=1.8e-19  Score=160.71  Aligned_cols=204  Identities=18%  Similarity=0.134  Sum_probs=146.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhc---CCCCCCCCCCC----CHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRS---GKFNCYATNSG----IPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      ..+-|+.+...     +.|..+.+++.+.++.   .....|.....    +.++|+.+|+++      ++++++|++|+|
T Consensus         7 ~~~yld~~~~~-----~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~i~~~~g   75 (381)
T d1elua_           7 NKTYFNFGGQG-----ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITDN   75 (381)
T ss_dssp             TSEECCTTTCC-----CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEESS
T ss_pred             CCEEeeCCccc-----CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh------CCCcccEEEECC
Confidence            34667777532     4566788888776642   11111211111    345778888887      467889999999


Q ss_pred             HHHHHHHHHHHh-cCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCC
Q 022213          116 CKQAVEVILSVL-ARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPG  190 (301)
Q Consensus       116 ~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  190 (301)
                      +|++++.++.++ .++||+|+++++.|++..    ...+..|+++..++...........+.+++.++++++++++++++
T Consensus        76 ~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~  155 (381)
T d1elua_          76 VTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLL  155 (381)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBC
T ss_pred             hHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhccccccccccccc
Confidence            999999999998 479999999999998543    345567999999987544433344677888888899999999999


Q ss_pred             CCcccCCCHHHHHHHHHHHHhC----CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          191 NPCGNVFTYHHLQEIAEMARKL----RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~----~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      |+||.+++   +++|.++|+++    ++++++|.+++..    ..+..+..++.+   +++.|++|.++.| .++|++.+
T Consensus       156 n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g----~~~~~~~~~~~D---~~~~s~~K~~~~p-~G~g~l~~  224 (381)
T d1elua_         156 WNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSRLEVD---YYAFTGHKWFAGP-AGVGGLYI  224 (381)
T ss_dssp             TTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTTSCCS---EEEEESSSTTCCC-TTCEEEEE
T ss_pred             ccccccch---hhHHHHHHhhcccccccccccccccccc----cccccccccccc---ccccccccccccc-chhhHHHh
Confidence            99999999   66677777764    6999999998863    233333333333   8899999997654 45677776


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      ..
T Consensus       225 ~~  226 (381)
T d1elua_         225 HG  226 (381)
T ss_dssp             CT
T ss_pred             hH
Confidence            43

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=7.2e-18  Score=149.88  Aligned_cols=186  Identities=16%  Similarity=0.167  Sum_probs=143.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCC-----------CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSG-----------IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL  127 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g-----------~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l  127 (301)
                      ++|+.+.+++.+.++..    |+.+.+           +.+.|+.+++++      ++++++|++++|+|+++..++.++
T Consensus        12 ~~p~~v~ea~~~~~~~~----~~np~~~~~~~~~~~~~~~~aR~~ia~l~------~~~~~~i~~~~~~T~~l~~~~~~~   81 (376)
T d1eg5a_          12 RVDDRVLEEMIVFYREK----YGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTV   81 (376)
T ss_dssp             CCCHHHHHHHHHHHHTC----CCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc----CCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHhhhhcc
Confidence            55688999998888742    332222           335688899998      678999999999999999988754


Q ss_pred             ----cCCCCEEEEcCCCCcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHH
Q 022213          128 ----ARPGANVLLPRPGWPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYH  200 (301)
Q Consensus       128 ----~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  200 (301)
                          ..+|+.|++....|..+.   ..++..|.+++.+|++.  ++.+|+++++++++++++++++++++|+||..++.+
T Consensus        82 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~  159 (376)
T d1eg5a_          82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVE  159 (376)
T ss_dssp             HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHH
T ss_pred             cccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCCCceEEEEECCccccceeeeeh
Confidence                467889999988888654   34456699999998864  346999999999999999999999999999999955


Q ss_pred             HHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          201 HLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       201 ~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++.++++ |+..++++++|.++..    +..+..+..++-+   ++++|++|++|.+|.++.|+
T Consensus       160 ~i~~~~~-~~~~~~~~~vD~~q~~----g~~~~d~~~~~~D---~~~~s~~K~~gp~G~~~l~~  215 (376)
T d1eg5a_         160 DVTRIVK-KKNKETLVHVDAVQTI----GKIPFSLEKLEVD---YASFSAHKFHGPKGVGITYI  215 (376)
T ss_dssp             HHHHHHH-HHCTTCEEEEECTTTT----TTSCCCCTTTCCS---EEEEEGGGGTSCTTCEEEEE
T ss_pred             hhhhhhh-hcccCceeEEEeeecc----ccccccccccCcc---ceecccceeecCCCceeEEe
Confidence            5555544 3455899999999876    2233333333322   89999999998889877776

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.3e-17  Score=149.88  Aligned_cols=203  Identities=17%  Similarity=0.211  Sum_probs=154.8

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCC--------CCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATN--------SGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~--------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      +++++-|+.+.-     -+.|..+.+++.+.++..........        .-+.+.|+.+|+++..     .++++|++
T Consensus        20 ~~~~iYld~a~~-----~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~-----~~~~~i~~   89 (405)
T d1jf9a_          20 GLPLAYLDSAAS-----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-----RSAEELVF   89 (405)
T ss_dssp             TEECEECCTTTC-----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-----SCGGGEEE
T ss_pred             CCCeEEEeCccc-----cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-----CCcccccc
Confidence            456788887752     25678899999888764211000000        1144667888888732     34689999


Q ss_pred             cCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          113 TLGCKQAVEVILSVL----ARPGANVLLPRPGWPY----YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       113 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +.|+|+++..++.++    .++||.|++.+-.|++    +....+..|+++..+|++++  ..++++.++..++++++++
T Consensus        90 ~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~--g~~~~~~~~~~i~~~t~lv  167 (405)
T d1jf9a_          90 VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPTLFDEKTRLL  167 (405)
T ss_dssp             ESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--SCBCGGGHHHHCCTTEEEE
T ss_pred             cCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC--CcCCHHHHHHhccCCcEEE
Confidence            999999999888864    3689999999999986    34555678999999998654  3589999999999999999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      ++++.+|.||.+++   +++|+++|+++|+++++|.+++.    +..+..+..++-+   +++.|+.|++|-+|  +|++
T Consensus       168 ~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~~~~D---~~~~s~hK~~Gp~G--~g~l  235 (405)
T d1jf9a_         168 AITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQALDCD---FYVFSGHKLYGPTG--IGIL  235 (405)
T ss_dssp             EEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCSS--CEEE
T ss_pred             EEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec----cccccchhhcCCc---eeeccccccccCCC--ceee
Confidence            99999999999999   88899999999999999999987    3334444444444   99999999977666  6777


Q ss_pred             Eee
Q 022213          265 VTN  267 (301)
Q Consensus       265 ~~~  267 (301)
                      .++
T Consensus       236 ~v~  238 (405)
T d1jf9a_         236 YVK  238 (405)
T ss_dssp             EEC
T ss_pred             eec
Confidence            763

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.8e-17  Score=147.66  Aligned_cols=214  Identities=13%  Similarity=0.112  Sum_probs=163.1

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEc
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF------NCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVT  113 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t  113 (301)
                      +++.+++|+..+.   -.+...+.+++++.+++++-.+      .-++...-+.+|++.+|+|+        ..+..+++
T Consensus        36 ~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~--------g~e~al~~  104 (383)
T d1bs0a_          36 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--------GYSRALLF  104 (383)
T ss_dssp             TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH--------TCSEEEEE
T ss_pred             CCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc--------CCCceEEe
Confidence            3667899988874   2455678899999888874211      11222223578889999988        45789999


Q ss_pred             CCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc---CccEEEEcCCC
Q 022213          114 LGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK---NTAAMVIINPG  190 (301)
Q Consensus       114 ~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~  190 (301)
                      ++++.+...++.++..++|.|++....|.......+..+.+.+.++.       .|.+.+++.+.+   +.+.+++..+.
T Consensus       105 ~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~v~  177 (383)
T d1bs0a_         105 ISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVF  177 (383)
T ss_dssp             SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred             cccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecCCC
Confidence            99999999999999999999999999999988888888888877764       577888776643   45677888999


Q ss_pred             CCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCC
Q 022213          191 NPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPN  270 (301)
Q Consensus       191 nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~  270 (301)
                      +.+|.+.+   +.+|.++|++||+++++||+++...++.........+. ....+.+.+++|.++.+|   |+++++.  
T Consensus       178 s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~-~~~~~~~~t~~ka~g~~G---g~v~~~~--  248 (383)
T d1bs0a_         178 SMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFGVSG---AAVLCSS--  248 (383)
T ss_dssp             TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTSSCC---EEEEECH--
T ss_pred             CCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcC-Cccccccccccccccccc---cccccch--
Confidence            99999999   77788889999999999999999887643222222222 233467789999999887   8888743  


Q ss_pred             CcccchhHHHHHHhhh
Q 022213          271 GIFQKSGIIDSIKDCL  286 (301)
Q Consensus       271 ~~~~~~~~~~~~~~~~  286 (301)
                            +.++.++...
T Consensus       249 ------~~~~~l~~~~  258 (383)
T d1bs0a_         249 ------TVADYLLQFA  258 (383)
T ss_dssp             ------HHHHHHHHHC
T ss_pred             ------hHHHHHHhhc
Confidence                  4777776653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.74  E-value=3e-17  Score=146.13  Aligned_cols=224  Identities=16%  Similarity=0.116  Sum_probs=163.5

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFN------CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTL  114 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~  114 (301)
                      ++.+++|+..+.   -.+...+.++++..++++.-...      -++...-+.+|++.+|+|+        ..+..++.+
T Consensus        44 ~~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--------g~e~all~~  112 (396)
T d2bwna1          44 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--------QKEAALVFS  112 (396)
T ss_dssp             EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--------TCSEEEEES
T ss_pred             CeEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--------CCCceeeee
Confidence            467899999984   35677789999998888742111      1222222467888888887        457899999


Q ss_pred             CHHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---c-CccEEEEcC
Q 022213          115 GCKQAVEVILSVL--ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---K-NTAAMVIIN  188 (301)
Q Consensus       115 g~~~al~~~~~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~-~~~~v~l~~  188 (301)
                      ++..|...++.++  ..++|.|+...-.|.+....++..+.++..++.       .|.+.+++.++   + +.+.+++..
T Consensus       113 sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H-------nd~~~l~~l~~~~~~~~~~~iv~eg  185 (396)
T d2bwna1         113 SAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-------NDVAHLRELIAADDPAAPKLIAFES  185 (396)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-------TCHHHHHHHHHHSCTTSCEEEEEES
T ss_pred             cchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec-------chHHHhhhHHhhhcccCceeEEEEe
Confidence            9999999999988  468899999999999888888889988887764       35555555442   2 345667778


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC-CCEEEEecCcccCCCCcceeEEEEee
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI-VPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~-~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ..+.+|.+.+   +.+|+++|++||+++++||+++..+++...--....++.. ...|+++||||+||..|   |+++++
T Consensus       186 vySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~  259 (396)
T d2bwna1         186 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS  259 (396)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred             eccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchh
Confidence            8899999999   8888889999999999999999988864332222222211 23489999999999998   998874


Q ss_pred             CCCCcccchhHHHHHHhhhc--ccCCCcccc
Q 022213          268 DPNGIFQKSGIIDSIKDCLS--IYSDIPTFI  296 (301)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  296 (301)
                      .        ++++.++....  .++++.++.
T Consensus       260 ~--------~~i~~l~~~~~~~ifStalpp~  282 (396)
T d2bwna1         260 A--------RMVDAVRSYAPGFIFSTSLPPA  282 (396)
T ss_dssp             H--------HHHHHHHHHCHHHHTSBCCCHH
T ss_pred             H--------HHHHHHHhhcchhhhcccCcHH
Confidence            3        58888887643  344444333

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.73  E-value=6.5e-17  Score=143.51  Aligned_cols=194  Identities=16%  Similarity=0.126  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      ++-.+++.++++++.+   .......+|++.+|+++        ..+++++++++|.|+.+++.++ +++||+|+++..+
T Consensus        12 ~~~~~~~~~~~~~~~~---~~G~~v~~~E~~la~~~--------g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~   80 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWI---TTGPKNQELEAAFCRLT--------GNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT   80 (376)
T ss_dssp             HHHHHHHHHHHHHTCC---SSSHHHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred             HHHHHHHHHHHhcCCC---cCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence            4556778888886643   33335789999999999        3467899999999999999999 7899999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |......+...|.++++++++++ .+.+|++.+++++++++++|+++|   ..|...+   +.+|.++|+++|+++|+|+
T Consensus        81 ~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~---~~~i~~i~~~~~i~vIeD~  153 (376)
T d1mdoa_          81 WVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPVH---YAGAPAD---LDAIYALGERYGIPVIEDA  153 (376)
T ss_dssp             CHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCBCEEC
T ss_pred             ccccccchhccccceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEeC---CCCCccc---hhHHHHHHHhcCceEEecc
Confidence            99999999999999999998764 567999999999999999888654   6788888   7888888999999999999


Q ss_pred             CCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          221 VYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       221 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +++....-..  ..+..+   +..++-++.+|.++..  .-|.++..+       +++..+++....
T Consensus       154 a~a~g~~~~~--~~~g~~---g~~~~Sf~~~K~l~~g--~GG~i~t~~-------~~l~~~~~~~~~  206 (376)
T d1mdoa_         154 AHATGTSYKG--RHIGAR---GTAIFSFHAIKNITCA--EGGIVVTDN-------PQFADKLRSLKF  206 (376)
T ss_dssp             TTCTTCEETT--EETTSS---SEEEEECCTTSSSCSS--SCEEEEESC-------HHHHHHHHHHTB
T ss_pred             chhccCeeCC--eecccc---cCccccCCCcCCCCCC--CCCEEEEec-------hhHHHHHHhhcc
Confidence            9986432111  111111   2123334456876443  347776644       357777776654

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=7.8e-17  Score=144.34  Aligned_cols=215  Identities=13%  Similarity=0.109  Sum_probs=155.9

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-------CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-------TNSGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      +++.+|||+..+.   -.+...+.+++++.++++...+ .+.       ...-+.+|++.+|+|+        ..+.+++
T Consensus        43 dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~-~~~~sr~~~g~~~~~~~lE~~lA~~~--------g~e~al~  110 (401)
T d1fc4a_          43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGF-GMASVRFICGTQDSHKELEQKLAAFL--------GMEDAIL  110 (401)
T ss_dssp             TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCS-CCCSCHHHHCCBHHHHHHHHHHHHHH--------TCSEEEE
T ss_pred             CCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCC-CcccceeeccCcHHHHHHHHHHHHhh--------cCCceEE
Confidence            5788999988873   2456678999999998874322 111       1122457888888888        4678999


Q ss_pred             cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc---c---CccEEEE
Q 022213          113 TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD---K---NTAAMVI  186 (301)
Q Consensus       113 t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~---~~~~v~l  186 (301)
                      ++++++|...++.+++.++|.|++..-.|.++...+...+.+...++.       .|.+.++..++   +   ...++++
T Consensus       111 ~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~liv~  183 (401)
T d1fc4a_         111 YSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIAT  183 (401)
T ss_dssp             ESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             ecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEEEE
Confidence            999999999999999999999999999999988888888888776654       45666665442   1   2345555


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCC-CEEEEecCcccCCCCcceeEEEE
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV-PVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~-~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      ....+..|...+   +++|.++|++||+++|+||+++...++.........+...+ ..|++.|+||.++  |...|++.
T Consensus       184 egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~  258 (401)
T d1fc4a_         184 DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTA  258 (401)
T ss_dssp             ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEE
T ss_pred             cCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCccccc
Confidence            666777888888   88888889999999999999999887643222222222222 2388999999974  33348887


Q ss_pred             eeCCCCcccchhHHHHHHhhh
Q 022213          266 TNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ++        .++++.++...
T Consensus       259 g~--------~~~~~~l~~~~  271 (401)
T d1fc4a_         259 AR--------KEVVEWLRQRS  271 (401)
T ss_dssp             EC--------HHHHHHHHHHC
T ss_pred             CC--------HHHHHHHHcCC
Confidence            63        25777777653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=1.3e-16  Score=140.93  Aligned_cols=157  Identities=24%  Similarity=0.263  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  161 (301)
                      ...|++.++++.        ..+..+++++++.|+..++.+++++||+|+++...|.+...++    ...|+++.+++. 
T Consensus        61 ~~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~-  131 (392)
T d1gc0a_          61 LNLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-  131 (392)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-
T ss_pred             HHHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc-
Confidence            457888888886        4567899999999999999999999999999999999875554    456899988865 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|++++++++++++++|++.+|.||+..+.+   +++|+++|+++|+++++|+.+..-.+.  +  |+ .++-+
T Consensus       132 ------~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~--~--Pl-~~GaD  197 (392)
T d1gc0a_         132 ------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ--R--PL-ELGAD  197 (392)
T ss_dssp             ------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC--C--GG-GGTCS
T ss_pred             ------cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc--C--hH-HhCCC
Confidence                  5789999999999999999999999999999   999999999999999999999864432  1  22 22333


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                         |++.|.+|.++..|--+|-+++.+
T Consensus       198 ---ivihS~TKyi~Ghsd~~~G~v~~~  221 (392)
T d1gc0a_         198 ---LVVHSATKYLSGHGDITAGIVVGS  221 (392)
T ss_dssp             ---EEEEETTTTTTCSSSCCCEEEEEC
T ss_pred             ---EEEEecceeecCCcccccccccch
Confidence               999999999876554444444433

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.69  E-value=6.6e-16  Score=136.50  Aligned_cols=164  Identities=16%  Similarity=0.218  Sum_probs=131.4

Q ss_pred             CCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcC
Q 022213           79 CYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQ  152 (301)
Q Consensus        79 ~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g  152 (301)
                      .|+..  .....|.+.++++.        ..+..+++++++.|+..++.+++++||+|+++...|.+...    .+...|
T Consensus        56 ~Y~R~~nPT~~~LE~~la~LE--------gg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G  127 (397)
T d1y4ia1          56 IYTRLGNPTTDALEKKLAVLE--------RGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG  127 (397)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT
T ss_pred             eeeCCCCHHHHHHHHHHHHHh--------CCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCc
Confidence            46552  12345667777775        34678899999999999999999999999999999987544    445789


Q ss_pred             ceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCC
Q 022213          153 VEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPY  232 (301)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~  232 (301)
                      +++.+++.       .|++.+++++++++++|++.+|.||+..+.+   +++|+++|+++|+++++|+.+..-...    
T Consensus       128 i~~~~vd~-------~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~----  193 (397)
T d1y4ia1         128 INVRFVDA-------GKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ----  193 (397)
T ss_dssp             CEEEEECT-------TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----
T ss_pred             eEeeccCC-------CCHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC----
Confidence            99998864       4789999999999999999999999999999   899999999999999999999863322    


Q ss_pred             CCccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          233 TPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       233 ~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .++. ++-+   |++.|++|.++..+--+|.+++.+
T Consensus       194 ~Pl~-~GaD---ivihS~TKyi~Ghsdvl~G~v~~~  225 (397)
T d1y4ia1         194 QPLQ-LGAD---IVVHSVTKYINGHGDVIGGIIVGK  225 (397)
T ss_dssp             CGGG-GTCS---EEEEETTTTTTCSSCCCCEEEEEC
T ss_pred             cchh-cCCC---EEEEehhhhcCCCcceeeeccCCC
Confidence            2222 2222   999999999988777777766654

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.68  E-value=1.7e-15  Score=135.88  Aligned_cols=200  Identities=15%  Similarity=0.186  Sum_probs=151.2

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCC----------CHHHHHHHHHHHhhhCCCCCC-CCC
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSG----------IPPARRAIADYLSRDLPYKLS-ADD  109 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----------~~~lr~~ia~~l~~~~~~~~~-~~~  109 (301)
                      ++++|-|+.+--     -+.|+.+.+++.+.++.... +-. ..+          +.+.|+.+++++      +++ ++.
T Consensus        20 ~~~~iYld~a~~-----~~~p~~v~~~~~~~~~~~~~-n~~-s~~~~~~~~~~~~~e~aR~~ia~ll------ga~~~~~   86 (408)
T d1t3ia_          20 GHPLVYLDNAAT-----SQKPRAVLEKLMHYYENDNA-NVH-RGAHQLSVRATDAYEAVRNKVAKFI------NARSPRE   86 (408)
T ss_dssp             TEECEECBTTTC-----CCCCHHHHHHHHHHHHHTCC-CC---CCSHHHHHHHHHHHHHHHHHHHHT------TCSCGGG
T ss_pred             CCCeEEeeCccc-----cCCCHHHHHHHHHHHHhcCC-CCC-chhhHHHHHHHHHHHHHHHHHHHHh------CCCCccc
Confidence            456788988753     24678888999887764211 110 111          235778888887      454 578


Q ss_pred             EEEcCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcch----HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213          110 VYVTLGCKQAVEVILSVL----ARPGANVLLPRPGWPYY----EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNT  181 (301)
Q Consensus       110 i~~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  181 (301)
                      ++++++++++++.++.++    .++||+|++.+-.|++.    ....+..|.++..++....  ...+.+.+++.+++++
T Consensus        87 i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~l~~~~~~~t  164 (408)
T d1t3ia_          87 IVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ--ESFDLEHFKTLLSEKT  164 (408)
T ss_dssp             EEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT--SSBCHHHHHHHCCTTE
T ss_pred             EEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc--ccccHHHhhhccCCCc
Confidence            999999999999988763    46899999999999853    3345667999999887543  3478999999999999


Q ss_pred             cEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCccee
Q 022213          182 AAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRF  261 (301)
Q Consensus       182 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rv  261 (301)
                      ++|++++.+|-||..++   +++|.++|+++|+++++|.+++.    +..+..+..++-+   +++.|..|.+|-+|  +
T Consensus       165 ~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~~~~D---~~~~s~hK~~gp~G--~  232 (408)
T d1t3ia_         165 KLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLIDCD---WLVASGHKMCAPTG--I  232 (408)
T ss_dssp             EEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCTT--C
T ss_pred             eEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec----ccccccccccCCc---eEEeccccccCCCC--c
Confidence            99999999999999999   88888999999999999999986    3344445444444   88999999865455  6


Q ss_pred             EEEEee
Q 022213          262 GWLVTN  267 (301)
Q Consensus       262 G~~~~~  267 (301)
                      |+++++
T Consensus       233 g~l~v~  238 (408)
T d1t3ia_         233 GFLYGK  238 (408)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            777764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.67  E-value=2.3e-15  Score=134.03  Aligned_cols=195  Identities=18%  Similarity=0.175  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPG  140 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~  140 (301)
                      .+-.+++.+.++.+... +....-..++++.+|+|+        ...+++.++++|.|+.++++++ +++||+|+++..+
T Consensus        13 ~~~~~~~~~~l~~g~~~-~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t   83 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWW-RMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFT   83 (384)
T ss_dssp             HHHHHHHHHHHHTSCCB-TTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred             HHHHHHHHHHHHcCCee-ecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccc
Confidence            44567788888866431 122224678999999998        4568999999999999999998 6899999999999


Q ss_pred             CcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEcc
Q 022213          141 WPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADE  220 (301)
Q Consensus       141 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~  220 (301)
                      |......+...|.+++++++++ ..+.+|++.+++.+.+++++++   +.+..|...+   +.+|.++|+++++++|+|.
T Consensus        84 ~~a~~~ai~~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d---~~~i~~~~~~~~i~lieD~  156 (384)
T d1b9ha_          84 FISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDA  156 (384)
T ss_dssp             CTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEEC
T ss_pred             cccccccccccccccccccccc-cccccchhhhcccccccccccc---cccccccccc---cccchhhhhhhhhhhhhhh
Confidence            9999999999999999999854 4567999999999998898876   4566777777   7888888999999999999


Q ss_pred             CCccccc-CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          221 VYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       221 ~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      +++.... .+.   .+..++.  -.++-.+.+|.++.  -.-|.+++.+++       +.++++...
T Consensus       157 a~a~ga~~~g~---~~g~~g~--~~~~Sf~~~K~i~~--g~GG~i~t~~~~-------~~~~~~~~~  209 (384)
T d1b9ha_         157 AHAHGARWQGK---RVGELDS--IATFSFQNGKLMTA--GEGGAVVFPDGE-------TEKYETAFL  209 (384)
T ss_dssp             TTCTTCEETTE---EGGGSSS--CEEEECCTTSSSCS--SSCEEEEECTTC-------HHHHHHHHH
T ss_pred             ceecccccCCE---ecCcccc--cceecccccccccc--cccchhhhhhHH-------HHHHHHHHH
Confidence            9986442 222   1222322  12444555787543  335778776643       556655543

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=7.3e-15  Score=129.42  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~  161 (301)
                      ...|++.++++-        ..+..++++++..|+..++.+++++||.|++....|.+..    ..+...|....+++. 
T Consensus        52 ~~~le~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-  122 (384)
T d1cs1a_          52 RDVVQRALAELE--------GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-  122 (384)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-
T ss_pred             HHHHHHHHHHHh--------CCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-
Confidence            456778888776        3567999999999999999999999999999999998653    344456777777653 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .|.+.++..+++++++|++..|.||+..+.+   +++|+++|+++|+++|+|+.+..-.+.    .++. ++-+
T Consensus       123 ------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~----~Pl~-~GaD  188 (384)
T d1cs1a_         123 ------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ----NPLA-LGAD  188 (384)
T ss_dssp             ------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CGGG-GTCS
T ss_pred             ------CCHHHHHhhccccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc----cccc-cCCC
Confidence                  5788999999999999999999999999999   889999999999999999999753322    2222 2222


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                         |++.|.+|.++..|--+|-+++.+.      +++..+++..
T Consensus       189 ---iVvhS~TKyi~Ghsdv~~G~vv~~~------~~~~~~~~~~  223 (384)
T d1cs1a_         189 ---LVLHSCTKYLNGHSDVVAGVVIAKD------PDVVTELAWW  223 (384)
T ss_dssp             ---EEEEETTTTTTCSSCCCCEEEEESS------HHHHHHHHHH
T ss_pred             ---EEEEccccccccCCCcccccccCCc------hhhhhhhhhh
Confidence               9999999998876655555444332      2355555544

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=1.5e-14  Score=127.36  Aligned_cols=168  Identities=17%  Similarity=0.182  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~  161 (301)
                      ...|.+.+|.+-        ..+..++++++..|+. ++..++++||+|++..+.|.+...+++    ..|+++.+++. 
T Consensus        51 ~~~le~~la~LE--------~~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~-  120 (380)
T d1ibja_          51 RDALESLLAKLD--------KADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-  120 (380)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-
T ss_pred             HHHHHHHHHHHc--------CCceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc-
Confidence            356777777776        3467889999999996 566888999999999999987765554    46888887754 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                            .+.++++++++++++++++..|.||+..+.+   +++|+++|+++|+++|+|+.++.....    .++. ++-+
T Consensus       121 ------~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~----~Pl~-~GaD  186 (380)
T d1ibja_         121 ------TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----RPLE-LGAD  186 (380)
T ss_dssp             ------TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----CGGG-TTCS
T ss_pred             ------chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc----cccc-cCCC
Confidence                  5789999999999999999999999999999   888889999999999999999863322    2222 2222


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                         |++.|++|.++..|--+|-+++.+.      +.+..+++...
T Consensus       187 ---iVvhS~TKyi~GhsDv~~G~v~~~~------~~~~~~~~~~~  222 (380)
T d1ibja_         187 ---IVMHSATKFIAGHSDVMAGVLAVKG------EKLAKEVYFLQ  222 (380)
T ss_dssp             ---EEEEETTTTTTCSSCCCCEEEEECS------HHHHHHHHHHH
T ss_pred             ---EEEecccceeccccCccccccccch------hhHHHHHHhhc
Confidence               9999999998886655555444332      23555555543

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.61  E-value=1.1e-14  Score=129.08  Aligned_cols=190  Identities=15%  Similarity=0.132  Sum_probs=138.3

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcc
Q 022213           65 EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVL-ARPGANVLLPRPGWPY  143 (301)
Q Consensus        65 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~  143 (301)
                      .+++.+.++++.+.++++  -...|++.+++++        ..+.+++++++|.|+.++++++ .++||+|++|..+|..
T Consensus         4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~--------~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a   73 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYS--------KSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA   73 (374)
T ss_dssp             HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred             HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence            366778887665444444  3688999999998        3458999999999999999999 6799999999999999


Q ss_pred             hHHHHHhcCceEEEeecCCCCCCCCCHHH--HHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccC
Q 022213          144 YEGIAQRKQVEVRHFDLLPERNWEVDLDA--VEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEV  221 (301)
Q Consensus       144 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~  221 (301)
                      ....+...|.+++++++++.. +..+.+.  .......+++++++++.   .|...+   +.+|.++|++++++||+|.+
T Consensus        74 ~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~vIED~a  146 (374)
T d1o69a_          74 SVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKECEKKPKALILTHL---YGNAAK---MDEIVEICKENDIVLIEDAA  146 (374)
T ss_dssp             GTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCEEEEECT
T ss_pred             hHHHHhhccceeEeccccccc-ccccccccccchhccccccccccccc---ccchhh---hHHHHHHhhccCcchhhhhh
Confidence            889999999999999987432 2233333  33455667888886554   566667   88888899999999999999


Q ss_pred             Cccccc-CCCCCCCccccCCCCCEEEEecC--cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          222 YGHLTF-GSIPYTPMGLFGSIVPVITLGSI--SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       222 y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~--SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      ++.... .+.   .++.++.    +.+.||  +|.++..|  -|.++..+       +++.++++....
T Consensus       147 ~a~g~~~~~~---~~G~~gd----~~~fSf~~~K~l~tge--GG~i~tnn-------~~~~~~~~~~~~  199 (374)
T d1o69a_         147 EALGSFYKNK---ALGTFGE----FGVYSYNGNKIITTSG--GGMLIGKN-------KEKIEKARFYST  199 (374)
T ss_dssp             TCTTCEETTE---ETTSSSS----EEEEECCTTSSSCCSS--CEEEEESC-------HHHHHHHHHHTB
T ss_pred             hhhcceECCe---ecCCCCc----eEEEeccCcccccccc--ceeehhhh-------HHHHHhhccccc
Confidence            987442 222   2233322    555566  57765443  47777644       357777776654

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=1.3e-14  Score=128.26  Aligned_cols=169  Identities=14%  Similarity=0.150  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  161 (301)
                      ...|.+.+|++.        ..+..+++++++.|+..++.+++++||+|++....|.+...++    ...|++..+++. 
T Consensus        69 ~~~LE~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-  139 (398)
T d1qgna_          69 TVVLEEKISALE--------GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP-  139 (398)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-
T ss_pred             HHHHHHHHHHHh--------CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc-
Confidence            456778888876        3568999999999999999999999999999999998765444    456888887753 


Q ss_pred             CCCCCCCCHHHH-HhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCC
Q 022213          162 PERNWEVDLDAV-EALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       162 ~~~~~~~~~~~l-~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~  240 (301)
                            .+.+.. +....+++++|++.+|.||+..+.+   +++|+++|+++|+++|+|+.+..-...    .++ .++-
T Consensus       140 ------~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~----~Pl-~~Ga  205 (398)
T d1qgna_         140 ------ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ----KAL-ALGA  205 (398)
T ss_dssp             ------SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CTT-TTTC
T ss_pred             ------cchhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC----Cch-hhCC
Confidence                  244444 4455678999999999999999999   999999999999999999999763332    222 1222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +   |++.|++|.++..+--+|-+++.+       ++.+.+++....
T Consensus       206 D---iVihS~TKy~~Ghsdv~~G~v~~~-------~~~~~~~~~~~~  242 (398)
T d1qgna_         206 D---LVLHSATKFLGGHNDVLAGCISGP-------LKLVSEIRNLHH  242 (398)
T ss_dssp             S---EEEECTTTTTTCSSSCCCEEEEEC-------HHHHHHHHHHHH
T ss_pred             C---EEEEechhhcCcccceeehhhcch-------hhhhhhhhhhcc
Confidence            2   899999999988766666665544       246666666543

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.60  E-value=2.5e-15  Score=134.28  Aligned_cols=204  Identities=11%  Similarity=0.009  Sum_probs=142.9

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC--------CCCCHHHHHHHHHHHhhhCCCCCCCCCEEE
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT--------NSGIPPARRAIADYLSRDLPYKLSADDVYV  112 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~--------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~  112 (301)
                      .+++|.|+.+.-     -++|..+.+++.+.+.+... +...        ..-..++|+.+|+++      ++++++|++
T Consensus        25 ~~~~iYLd~as~-----g~~p~~v~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~e~~R~~iA~ll------ga~~~ei~~   92 (404)
T d1qz9a_          25 PEGVIYLDGNSL-----GARPVAALARAQAVIAEEWG-NGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVV   92 (404)
T ss_dssp             CTTCEECCTTTS-----CCCBTTHHHHHHHHHHTCCC-CCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEE
T ss_pred             CCCCEEcCCccc-----ccCCHHHHHHHHHHHHHHhc-ccCcccccchhHHHHHHHHHHHHHHHh------CCCCCcEEE
Confidence            457889988863     24566788888888764211 1110        011236788888887      678999999


Q ss_pred             cCCHHHHHHHHHHHh------cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEE
Q 022213          113 TLGCKQAVEVILSVL------ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVI  186 (301)
Q Consensus       113 t~g~~~al~~~~~~l------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  186 (301)
                      |.++|+++..++...      ..+|+.|++.+-.+.+........+.+...+....  ....+.+.+++++++++++|++
T Consensus        93 ~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~T~lV~i  170 (404)
T d1qz9a_          93 TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL--RLVDSPEELPQAIDQDTAVVML  170 (404)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE--EEESSGGGHHHHCSTTEEEEEE
T ss_pred             ecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec--cccccchhHHHhcCCCceEEEE
Confidence            999999998876533      25788888887777654333333333322222211  1236778899999999999999


Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          187 INPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       187 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++.+|.||..++   +++|+++|+++++++++|.++....    .+..+...+.+   +++.|.+|.+..+.-..|+++.
T Consensus       171 ~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~----~~~~~~~~~~d---~~~~s~~K~~~~~~g~~g~~~~  240 (404)
T d1qz9a_         171 THVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA----VPVDLHQAGAD---YAIGCTYKYLNGGPGSQAFVWV  240 (404)
T ss_dssp             ESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT----SCCCHHHHTCS---EEEECSSSTTCCCTTCCCEEEE
T ss_pred             ecccccccceec---HHHHhccccccccceeEEeeccccc----cccccccccce---EEEEechhhcccCCceEEEEEe
Confidence            999999999999   9999999999999999999998733    33334333333   8888999987665555677776


Q ss_pred             eC
Q 022213          267 ND  268 (301)
Q Consensus       267 ~~  268 (301)
                      +.
T Consensus       241 ~~  242 (404)
T d1qz9a_         241 SP  242 (404)
T ss_dssp             CT
T ss_pred             ch
Confidence            54

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=2e-14  Score=127.86  Aligned_cols=159  Identities=21%  Similarity=0.224  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG----IAQRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~  161 (301)
                      ...|.+.|+++-        ..+..++++++..|+..++.+++++||+|+++...|.+...    .+...|++..+++..
T Consensus        60 ~~~LE~~la~LE--------~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~  131 (421)
T d2ctza1          60 VDVLEKRLAALE--------GGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE  131 (421)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred             HHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc
Confidence            456777777776        35678999999999999999999999999999999987644    445788998887541


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCc-ccccCCCCCCCccccCC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYG-HLTFGSIPYTPMGLFGS  240 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~  240 (301)
                            -..+..+..+++++++|++.+|.||+..+.+   +++|+++|+++|+++|+|+.++ .-..    ..|+ .++-
T Consensus       132 ------~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~----~~Pl-~~Ga  197 (421)
T d2ctza1         132 ------ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYL----LRPL-AWGA  197 (421)
T ss_dssp             ------CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTS----CCGG-GGTC
T ss_pred             ------cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEeccccccccee----cccc-ccCC
Confidence                  2346667778889999999999999999999   9999999999999999999997 3221    1222 2222


Q ss_pred             CCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          241 IVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       241 ~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      +   |++.|.+|.++..+--+|-+++.+.
T Consensus       198 D---iVvhS~TKyl~GHsD~l~G~vv~~~  223 (421)
T d2ctza1         198 A---LVTHSLTKWVGGHGAVIAGAIVDGG  223 (421)
T ss_dssp             S---EEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             c---EEEEechhhccCCCCeEEEEEEcCC
Confidence            3   9999999999887666666665444

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.1e-14  Score=125.83  Aligned_cols=158  Identities=13%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCceEEEeecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIA----QRKQVEVRHFDLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  161 (301)
                      ...|.+.++++-        ..+..+++++++.|+..++.+++++||+|++....|.+...++    ...|+++.+++. 
T Consensus        60 ~~~le~~la~LE--------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~-  130 (391)
T d1cl1a_          60 HFSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-  130 (391)
T ss_dssp             HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT-
T ss_pred             HHHHHHHHHHHh--------CCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC-
Confidence            345677777765        4568999999999999999999999999999999999765554    456888888764 


Q ss_pred             CCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCeEEEccCCcccccCCCCCCCccccC
Q 022213          162 PERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK--LRVMVVADEVYGHLTFGSIPYTPMGLFG  239 (301)
Q Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~--~~~~ii~D~~y~~~~~~~~~~~~~~~~~  239 (301)
                            .|.+.++++++++++++++.+|.||+..+.+   +++|+++|++  +|+++|+|+.+......    .++. ++
T Consensus       131 ------~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~----~Pl~-~G  196 (391)
T d1cl1a_         131 ------LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF----KALD-FG  196 (391)
T ss_dssp             ------TCGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS----CGGG-GT
T ss_pred             ------ccccccccccccccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh----cccc-cc
Confidence                  4678899999999999999999999999999   6677777755  59999999999874432    2222 22


Q ss_pred             CCCCEEEEecCcccCCCCcceeEEEEeeCC
Q 022213          240 SIVPVITLGSISKRWLVPGWRFGWLVTNDP  269 (301)
Q Consensus       240 ~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~  269 (301)
                      -+   |++.|++|.++..+--+|-+++.+.
T Consensus       197 aD---ivvhS~TKy~~GhsdvlgG~vv~~~  223 (391)
T d1cl1a_         197 ID---VSIQAATKYLVGHSDAMIGTAVCNA  223 (391)
T ss_dssp             CS---EEEEETTTTTTCSSSCCCEEEEECT
T ss_pred             cc---eEEeecchhccccccccccceeccc
Confidence            22   9999999998886655555544443

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=4.2e-16  Score=135.08  Aligned_cols=189  Identities=15%  Similarity=0.091  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCC
Q 022213           61 AVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPG  140 (301)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~  140 (301)
                      .+++++|+.++..+  ...|++.....+|++.+|+++        ..+++++++|+++|+..++++++++||.+++..+.
T Consensus        13 ~p~v~~A~~~a~~g--~~~yg~~p~~~~le~~lA~~~--------G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~   82 (343)
T d1m6sa_          13 TEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETF--------GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADS   82 (343)
T ss_dssp             CHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTC
T ss_pred             CHHHHHHHHhhhcC--CcccCCCHHHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHHHhccCCceeccccc
Confidence            35788888655322  225777667889999999998        34578999999999999999999999999999998


Q ss_pred             CcchH---HHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC------cc-EEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          141 WPYYE---GIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN------TA-AMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       141 ~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~-~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      +..+.   ......+.....++.   .....+++.++..+...      +. .++.+.++|+.|.+.+.+++++|+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~  159 (343)
T d1m6sa_          83 HIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAK  159 (343)
T ss_dssp             HHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             cceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHH
Confidence            87543   233334444444443   23346888888877642      23 3455667899999999999999999999


Q ss_pred             hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          211 KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      ++++++++|+++..+.......... ..... ....+.+.+|  +..|.+.|+++.
T Consensus       160 ~~g~~~~~D~a~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~--~~~g~~~~~~~~  211 (343)
T d1m6sa_         160 EHGINVHIDGARIFNASIASGVPVK-EYAGY-ADSVMFCLSK--GLCAPVGSVVVG  211 (343)
T ss_dssp             HHTCEEEEEETTHHHHHHHHCCCHH-HHHHT-CSEEEEESSS--TTCCSSCEEEEE
T ss_pred             hcCeEEEeccccccccccccccchh-hhccc-cccccccccc--cccccccccccc
Confidence            9999999999998765432111111 11111 1233333333  455666777775

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.56  E-value=3.4e-14  Score=123.16  Aligned_cols=155  Identities=17%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCCC
Q 022213           88 PARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLPE  163 (301)
Q Consensus        88 ~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~  163 (301)
                      .|++.+|++-        ..+..+++++++.|+..++.+++++||+|+++...|.+..    ..+...|+++.+++.   
T Consensus         2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~---   70 (331)
T d1pffa_           2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---   70 (331)
T ss_dssp             HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred             HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc---
Confidence            4788888887        4567899999999999999999999999999999998653    445678999998865   


Q ss_pred             CCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHH-HhCCCeEEEccCCcccccCCCCCCCccccCCCC
Q 022213          164 RNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMA-RKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIV  242 (301)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~-~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  242 (301)
                          .|.+.++++++++++.+++..|.||+..+.+   ++++++++ +++++++|+|+.+......  ++..   ++-+ 
T Consensus        71 ----~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~--~pl~---~GaD-  137 (331)
T d1pffa_          71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT--NPLD---LGVD-  137 (331)
T ss_dssp             ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC--CGGG---GTCS-
T ss_pred             ----cchhhHhhhcccccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc--cccc---cCCC-
Confidence                4778999999999999999999999999999   77677764 5789999999999864432  2222   2222 


Q ss_pred             CEEEEecCcccCCCCcceeEEEEeeC
Q 022213          243 PVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       243 ~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                        |++.|++|.++..|--+|-+++.+
T Consensus       138 --iVv~S~TKy~~Gh~d~~~G~v~~~  161 (331)
T d1pffa_         138 --IVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             --EEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             --EEEecchhhcCCCCcccccccccc
Confidence              999999999888655555554433

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.54  E-value=1.1e-13  Score=125.61  Aligned_cols=218  Identities=14%  Similarity=0.105  Sum_probs=146.4

Q ss_pred             CCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHH
Q 022213           41 PRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAV  120 (301)
Q Consensus        41 ~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al  120 (301)
                      ..-+|||-.-...    .++.+...    .++.-++ ..|+......+|++.+++++        ..+.++++++++.|.
T Consensus        41 ~~v~iDl~sDs~t----~am~~~~~----aa~~~GD-d~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An  103 (456)
T d1c7ga_          41 KDIYIDLLTDSGT----NAMSDKQW----AGMMIGD-EAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAE  103 (456)
T ss_dssp             GGCSEECSCSSSC----CCEEHHHH----HHTTSCC-CCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHH
T ss_pred             cceeeEcccCCCc----ccchHHHH----HHHhccc-hhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHH
Confidence            3457788654432    22333332    2332222 25887777889999999999        567899999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC--------CCCCCCCHHHHHhhcccC----ccEEEEcC
Q 022213          121 EVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP--------ERNWEVDLDAVEALADKN----TAAMVIIN  188 (301)
Q Consensus       121 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~----~~~v~l~~  188 (301)
                      .+++++++++||.|+.... |......+...|..++.+....        ...+.+|++.+++.++++    +..+++.+
T Consensus       104 ~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~  182 (456)
T d1c7ga_         104 NLLSQLAIKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAV  182 (456)
T ss_dssp             HHHHHHHCCTTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred             HHHHHHhcCCCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeee
Confidence            9999999999999987665 4444455667788877665321        123568999999988642    34678889


Q ss_pred             CCCCc-ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc--c-----CCCCCCCcccc----CCCCCEEEEecCcccCCC
Q 022213          189 PGNPC-GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT--F-----GSIPYTPMGLF----GSIVPVITLGSISKRWLV  256 (301)
Q Consensus       189 p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~--~-----~~~~~~~~~~~----~~~~~vi~~~s~SK~~~~  256 (301)
                      ++|+. |.+++.+++++|.++|++||+.+++|++...-.  +     .+....++...    ....+ ++..|++|.++.
T Consensus       183 ~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad-~~s~s~~K~~~~  261 (456)
T d1c7ga_         183 TVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYAD-GCTMSGKKDCLV  261 (456)
T ss_dssp             SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTTTTCC
T ss_pred             cccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccc-cEEEeccccccc
Confidence            98875 678899999999999999999999999975311  0     00011111110    01112 556699999776


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHHhhh
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIKDCL  286 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~  286 (301)
                      ++  .|+++.++       +++.++++...
T Consensus       262 ~~--GG~i~~~~-------~~l~~~~r~~~  282 (456)
T d1c7ga_         262 NI--GGFLCMND-------EEMFSAAKELV  282 (456)
T ss_dssp             SS--CEEEEESC-------HHHHHHHHHHH
T ss_pred             cc--eeEEEcCC-------HHHHHHHHHhc
Confidence            53  37777644       34667666543

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.53  E-value=1.8e-13  Score=120.93  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYE----GIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~  162 (301)
                      ..|.+.++++-        ..+..+++++++.|+..++.+++++||.|++....|.+..    ..+...|+++.+++.  
T Consensus        62 ~~le~~la~LE--------g~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~--  131 (394)
T d1e5ea_          62 SNLEGKIAFLE--------KTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT--  131 (394)
T ss_dssp             HHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred             HHHHHHHHHHh--------CCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCC--
Confidence            45677777765        3567899999999999999999999999999999997653    345678999998875  


Q ss_pred             CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH-hCCCeEEEccCCcccccCCCCCCCccccCCC
Q 022213          163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR-KLRVMVVADEVYGHLTFGSIPYTPMGLFGSI  241 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~-~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~  241 (301)
                           .|.+++++++++++++|++..|.||+..+.+   ++++++.++ ++++++|+|+.+..-...    .|+ .++-+
T Consensus       132 -----~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~----~Pl-~~GaD  198 (394)
T d1e5ea_         132 -----AIPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT----NPV-DFGVD  198 (394)
T ss_dssp             -----TSTTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC----CGG-GGTCS
T ss_pred             -----CCHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC----Cch-hcCCC
Confidence                 4667899999999999999999999999999   777777665 468999999999864432    222 22223


Q ss_pred             CCEEEEecCcccCCCCcceeEEEEe
Q 022213          242 VPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       242 ~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                         |++.|.+|.++..+-=+|-+++
T Consensus       199 ---iVvhS~TKy~~GhsDv~~G~v~  220 (394)
T d1e5ea_         199 ---VVVHSATKYINGHTDVVAGLIC  220 (394)
T ss_dssp             ---EEEEETTTTTTCSSCCCCEEEE
T ss_pred             ---EEEechhhhcCCCccccccccc
Confidence               9999999998875555554444

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.51  E-value=6e-14  Score=123.20  Aligned_cols=188  Identities=14%  Similarity=0.114  Sum_probs=129.8

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCCC--EEEcCCHHHHHHHHHHHhcCCCCE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSADD--VYVTLGCKQAVEVILSVLARPGAN  133 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~--i~~t~g~~~al~~~~~~l~~~gd~  133 (301)
                      -+.++.|++++.+    ...+.+.+  ..-..+.|+.+++++      ++++++  +++|+|+|+++++++.++..++|.
T Consensus         9 ~~~~~~V~~A~~~----~~~~~~~~~~~~~~~~~r~~l~~l~------~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~   78 (361)
T d1m32a_           9 LTTSRTVKEAMLF----DSCTWDDDYNIGVVEQIRQQLTALA------TASEGYTSVLLQGSGSYAVEAVLGSALGPQDK   78 (361)
T ss_dssp             CCCCHHHHHTTCC----CCCTTSHHHHTTTHHHHHHHHHHHH------CSSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred             CCCCHHHHHHhhh----hccCCCcHHHHHHHHHHHHHHHHHh------CCCCCCEEEEECCCHHHHHHHHHHHhhhhccc
Confidence            3556677665432    22222221  234578999999998      455554  778899999999999999988888


Q ss_pred             EEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          134 VLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       134 Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      +++....+..  ........+.....+..........+.+.......++++.+++++.+|.||..++   +++|.++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~  155 (361)
T d1m32a_          79 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHR  155 (361)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred             cceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhcc
Confidence            7777665543  2334445556655555443333223344444556678999999999999999999   8888999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCC-cceeEEEEee
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVP-GWRFGWLVTN  267 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-G~rvG~~~~~  267 (301)
                      +|+++++|.+++...    .+..+..++-   .+++.|..|.++.| |  +|+++++
T Consensus       156 ~g~~~~vDa~qs~G~----~~~d~~~~~~---D~~~~s~~K~l~gp~G--~g~l~~~  203 (361)
T d1m32a_         156 YGKTYIVDAMSSFGG----IPMDIAALHI---DYLISSANKCIQGVPG--FAFVIAR  203 (361)
T ss_dssp             HTCEEEEECTTTTTT----SCCCTTTTTC---SEEEEESSSTTCCCSS--EEEEEEE
T ss_pred             cceeeEeecccccCc----cccccccccc---ceEEeeecccccCCCC--ceEEEec
Confidence            999999999998733    3333444333   38999999997664 6  6777765

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=127.07  Aligned_cols=186  Identities=13%  Similarity=0.078  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCC-CCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSA-DDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      +.++.|++++..    ....+...  .+-+.+.|+.+++++      +++. ..|+++.|+|+++++++..++.+||+++
T Consensus        29 ~~~~~Vl~am~~----~~i~HRs~~f~~i~~ea~~~l~~ll------g~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~   98 (388)
T d1h0ca_          29 NLPPRIMAAGGL----QMIGSMSKDMYQIMDEIKEGIQYVF------QTRNPLTLVISGSGHCALEAALVNVLEPGDSFL   98 (388)
T ss_dssp             CCCHHHHHHHTC----CCCCTTSHHHHHHHHHHHHHHHHHH------TCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEE
T ss_pred             CCCHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHh------CCCCCcEEEEcCcHHHHHHHHHHHhhccCCcee
Confidence            456777776532    22222221  111456666677776      3333 3689999999999999999999999999


Q ss_pred             EcCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-cCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          136 LPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-KNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 ~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      +...++.+.  .......+.....+..  ..+...+.+++++.+. .+++.+++++.+|.||...+   +++|+++|+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~  173 (388)
T d1h0ca_          99 VGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFGELCHRY  173 (388)
T ss_dssp             ECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHTT
T ss_pred             eecccceeeeecccccccccccccccc--CCccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHHHHhhcc
Confidence            998888754  3334445555555444  3344588888877554 47899999999999999999   88999999999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEee
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      |+++++|.+++...    .+..+..++-+   +++.|..|.++.|+ .+|+++.+
T Consensus       174 g~~~~vD~~qs~g~----~~~d~~~~~~D---~~~~s~~K~~~gp~-g~~~~~~~  220 (388)
T d1h0ca_         174 KCLLLVDSVASLGG----TPLYMDRQGID---ILYSGSQKALNAPP-GTSLISFS  220 (388)
T ss_dssp             TCEEEEECTTTTTT----SCCCTTTTTCS---EEEEESSSTTCCCT-TCEEEEEC
T ss_pred             cccceecccccccc----ccccccccccc---eecccccccccCCC-ceEEEeec
Confidence            99999999998633    23333333322   88889999976653 45666553

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.50  E-value=5.5e-13  Score=117.79  Aligned_cols=193  Identities=15%  Similarity=0.150  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCC--CEEEEcC
Q 022213           62 VEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPG--ANVLLPR  138 (301)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~g--d~Vl~~~  138 (301)
                      ++-.+++.++++.+.   |....-...|++++++++        ..+++++++++|.|+.++++++. .+|  |+|+++.
T Consensus        12 ~~~~~~v~~~l~~~~---~~~G~~v~~fE~~~~~~~--------g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~   80 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFL--------GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP   80 (371)
T ss_dssp             HHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred             HHHHHHHHHHHcCCC---ccCCHHHHHHHHHHHHHH--------CcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccc
Confidence            455678888887654   333234688999999998        34579999999999999999985 344  4899999


Q ss_pred             CCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213          139 PGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVA  218 (301)
Q Consensus       139 p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~  218 (301)
                      -+|......+...|.++++++++++.  ..+.+.+++.+.++++++++++   ..|...+   +.+|.++|+++++++|+
T Consensus        81 ~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~vh---~~G~~~~---~~~i~~~~~~~~i~lIE  152 (371)
T d2fnua1          81 ISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVD---YAGKSVE---VESVQKLCKKHSLSFLS  152 (371)
T ss_dssp             SSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHHTCEEEE
T ss_pred             ccccccceeeeccCcccccccccccc--cccchhhhhhccchhhcccccc---ccccccc---cccccccccccchhhcc
Confidence            99999889999999999999987654  3566788888888899888664   5688888   77888889999999999


Q ss_pred             ccCCccccc-CCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          219 DEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       219 D~~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      |.+++.... .+..   .+.++.  -.++-...+|.+.+.+  -|.++..+       +++.++++....
T Consensus       153 Daaqa~Ga~~~~~~---~G~~g~--~~~~Sf~~~K~l~~g~--GG~i~t~~-------~~~~~~~~~~~~  208 (371)
T d2fnua1         153 DSSHALGSEYQNKK---VGGFAL--ASVFSFHAIKPITTAE--GGAVVTND-------SELHEKMKLFRS  208 (371)
T ss_dssp             ECTTCTTCEETTEE---TTSSSS--EEEEECCTTSSSCCSS--CEEEEESC-------HHHHHHHHHHTB
T ss_pred             chhhccCceecccc---CCcccc--cccccccccccccccc--ceEEEeec-------hhhhhhcccccc
Confidence            999987443 2211   222221  1133344488865433  57777644       357788777654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=6e-14  Score=119.89  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPR  138 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~  138 (301)
                      +++|.+.+++.+..... ...|++.....++|+.+++++      +.++++|++|+|+|+++..++..+.++++.+++..
T Consensus        11 g~~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~------g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~   83 (340)
T d1svva_          11 GMHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELL------ERPDADVHFISGGTQTNLIACSLALRPWEAVIATQ   83 (340)
T ss_dssp             CCCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHH------TCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEET
T ss_pred             CCCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHHhhhcccccccc
Confidence            45678999998875533 346877667788999999999      45778999999999999999999999999999998


Q ss_pred             CCCcchHHHH--HhcCceEEEeecCCCCCCCCCHHHHHhhcc------cCccEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 022213          139 PGWPYYEGIA--QRKQVEVRHFDLLPERNWEVDLDAVEALAD------KNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR  210 (301)
Q Consensus       139 p~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~  210 (301)
                      +.+..+....  ...+........  ... ..+.+.......      ..+..++++.+.|..|.+...+++..+.+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (340)
T d1svva_          84 LGHISTHETGAIEATGHKVVTAPC--PDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCK  160 (340)
T ss_dssp             TSHHHHSSTTHHHHTTCCEEEECC--TTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHH
T ss_pred             ccceeeeecccccccceeeeeccc--ccc-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccc
Confidence            8887653222  223333322222  222 233333333221      12334555666666788889999999999999


Q ss_pred             hCCCeEEEccCCccccc
Q 022213          211 KLRVMVVADEVYGHLTF  227 (301)
Q Consensus       211 ~~~~~ii~D~~y~~~~~  227 (301)
                      +++.++++|++|.....
T Consensus       161 ~~g~~~~~d~a~~~~~~  177 (340)
T d1svva_         161 EHGLYLFLDGARLASAL  177 (340)
T ss_dssp             HHTCEEEEECTTHHHHH
T ss_pred             cccceeeeeccceeeee
Confidence            99999999999976443

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.47  E-value=3.4e-13  Score=116.17  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=127.3

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHH
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVE  121 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~  121 (301)
                      ++.++|...++     .++.|++++++.++..+ ....|+......++|+.+++++.      . +..+++|+|+|+|+.
T Consensus         2 ~~~~~f~s~n~-----~g~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g------~-~~~v~f~~sGt~An~   68 (345)
T d1v72a1           2 PPALGFSSDNI-----AGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE------R-DVEVFLVPTGTAANA   68 (345)
T ss_dssp             CCCCBCSCGGG-----CCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT------S-CCEEEEESCHHHHHH
T ss_pred             CCCcCcCCCCC-----CCCCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHC------C-CcEEEECCchHHHHH
Confidence            56778887664     34577899999876543 33457666677889999999983      2 346899999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCCcch---HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC------cc-EEEEcCCCC
Q 022213          122 VILSVLARPGANVLLPRPGWPYY---EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN------TA-AMVIINPGN  191 (301)
Q Consensus       122 ~~~~~l~~~gd~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~-~v~l~~p~n  191 (301)
                      .++..++.+++.+++....+...   .......+..+..++.  ......+++.++..+.+.      +. .++...+.|
T Consensus        69 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  146 (345)
T d1v72a1          69 LCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQAT  146 (345)
T ss_dssp             HHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC
T ss_pred             HHHHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceeeeeeccc
Confidence            99999999888888776665543   2333445555555433  334458999999887652      22 345567788


Q ss_pred             CcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc
Q 022213          192 PCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF  227 (301)
Q Consensus       192 ptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~  227 (301)
                      +.|...+.++++++.++|++||+++++|+++.....
T Consensus       147 ~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~  182 (345)
T d1v72a1         147 EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL  182 (345)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred             cccccccchhhhhHHHHHHhcCceeeecccccceec
Confidence            999999999999999999999999999999986543

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.9e-12  Score=112.51  Aligned_cols=219  Identities=14%  Similarity=0.019  Sum_probs=154.0

Q ss_pred             CCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCC---CEEEcCCH
Q 022213           40 DPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSAD---DVYVTLGC  116 (301)
Q Consensus        40 ~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~---~i~~t~g~  116 (301)
                      ++.+..||......     ..++.+.+.+.+.++.+- ..+.......++.+.+.+++.+-++.+....   .=++|+|+
T Consensus        51 dg~~~~n~asf~~t-----~~~~~~~~l~~~~~~~N~-~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~Gg  124 (450)
T d1pmma_          51 DGNARQNLATFCQT-----WDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS  124 (450)
T ss_dssp             SCCGGGBCSCCSCC-----CCCHHHHHHHHHTTTCBT-TCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSH
T ss_pred             CCCccccccccccC-----CCCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCch
Confidence            35556777766533     234677788877776432 2333222346788888888877666432211   24899999


Q ss_pred             HHHHHHHHHHhcC-----------CC-CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          117 KQAVEVILSVLAR-----------PG-ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       117 ~~al~~~~~~l~~-----------~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      |+|+.+++.+...           .+ ..++++...|.++...++..|+++..++.++. ++.+|++.+++++++++.+|
T Consensus       125 SeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~~t~~V  203 (450)
T d1pmma_         125 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDENTIGV  203 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhhCceEE
Confidence            9999988877532           12 34777788899999999999999999988653 47899999999999999999


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHH---HHHhCCCeEEEccCCcccc--cCCCCCCCccccCCCCC-EEEEecCcccCCCCc
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAE---MARKLRVMVVADEVYGHLT--FGSIPYTPMGLFGSIVP-VITLGSISKRWLVPG  258 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~---~~~~~~~~ii~D~~y~~~~--~~~~~~~~~~~~~~~~~-vi~~~s~SK~~~~~G  258 (301)
                      +.+.+++.||.+-+.+++.+|++   .|+++|+++.+|.+|+.+.  |..+.......   ..+ --+..|.+|. +...
T Consensus       204 v~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~---~~~aDSi~~s~HK~-~~~p  279 (450)
T d1pmma_         204 VPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR---LPRVKSISASGHKF-GLAP  279 (450)
T ss_dssp             ECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT---STTEEEEEEETTTT-TCCC
T ss_pred             EeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhc---ccceeEeecChhhc-cCCC
Confidence            99999999999999776666554   4678999999999998754  22211111111   112 2566799998 4555


Q ss_pred             ceeEEEEeeCC
Q 022213          259 WRFGWLVTNDP  269 (301)
Q Consensus       259 ~rvG~~~~~~~  269 (301)
                      ..+||++..++
T Consensus       280 ~g~g~l~~r~~  290 (450)
T d1pmma_         280 LGCGWVIWRDE  290 (450)
T ss_dssp             SSCEEEEESSG
T ss_pred             CCeeEEEecCh
Confidence            66999998664

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.7e-12  Score=114.52  Aligned_cols=166  Identities=19%  Similarity=0.174  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----hcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQ----RKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~  162 (301)
                      ..|.+.++++-        ..+..++++++..|+..+ ..++.+||+|++....|.+...++.    ..|+++.+++   
T Consensus        58 ~~lE~~la~LE--------~~~~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~---  125 (393)
T d1n8pa_          58 ENLERAVAALE--------NAQYGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN---  125 (393)
T ss_dssp             HHHHHHHHHHT--------TCSEEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES---
T ss_pred             HHHHHHHHHHh--------CCceEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee---
Confidence            45666666664        346778888889999755 4667899999999999987655554    4567666653   


Q ss_pred             CCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHH----hCCCeEEEccCCcccccCCCCCCCcccc
Q 022213          163 ERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR----KLRVMVVADEVYGHLTFGSIPYTPMGLF  238 (301)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~----~~~~~ii~D~~y~~~~~~~~~~~~~~~~  238 (301)
                           .+.+++++++++++++|++..|.||+..+.+   +++|+++|+    ++|+++|+|+.+......    .++ .+
T Consensus       126 -----~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~----~Pl-~~  192 (393)
T d1n8pa_         126 -----DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS----NPL-NF  192 (393)
T ss_dssp             -----SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC----CGG-GG
T ss_pred             -----cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC----Cch-hh
Confidence                 3457899999999999999999999999999   777777776    789999999999864432    122 22


Q ss_pred             CCCCCEEEEecCcccCCCCc-ceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          239 GSIVPVITLGSISKRWLVPG-WRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       239 ~~~~~vi~~~s~SK~~~~~G-~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      +-+   |++.|++|.++..| .-.|.++..+       +++.++++....
T Consensus       193 GAD---iVvhS~TKyi~GhsDv~~G~v~~~~-------~~~~~~l~~~~~  232 (393)
T d1n8pa_         193 GAD---IVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQN  232 (393)
T ss_dssp             TCS---EEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHH
T ss_pred             CCC---EEEEccccccCCCCccccceeeecc-------hhHHHHHHHHHh
Confidence            223   99999999987754 4555555433       245666665543

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.40  E-value=8.2e-13  Score=120.10  Aligned_cols=138  Identities=14%  Similarity=0.175  Sum_probs=105.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE-------EEEcCCCCcchHHHHHhc
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN-------VLLPRPGWPYYEGIAQRK  151 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~-------Vl~~~p~~~~~~~~~~~~  151 (301)
                      .|+...+..+|++.+++++        ..+++++++++++|.+.++++++++|+.       ++...+.|..+.......
T Consensus        70 ~y~~~~~~~~le~~~a~l~--------g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~  141 (465)
T d1ax4a_          70 AYAGSRNYYDLKDKAKELF--------NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELN  141 (465)
T ss_dssp             CSSSCHHHHHHHHHHHHHH--------CCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHT
T ss_pred             hhccChHHHHHHHHHHHHH--------CCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHc
Confidence            5887778889999999998        4578999999999999999999865433       455555555666667778


Q ss_pred             CceEEEeecC--------CCCCCCCCHHHHHhhccc----CccEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCeEEE
Q 022213          152 QVEVRHFDLL--------PERNWEVDLDAVEALADK----NTAAMVIINPGNPC-GNVFTYHHLQEIAEMARKLRVMVVA  218 (301)
Q Consensus       152 g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~ii~  218 (301)
                      |..++.+...        ....+.+|.+.+++++++    .+..+++..++|.. |..++.+.+++|.++|++||+++|+
T Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~  221 (465)
T d1ax4a_         142 GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM  221 (465)
T ss_dssp             TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence            8877665431        123456899999998864    23344555556554 4568999999999999999999999


Q ss_pred             ccCCcc
Q 022213          219 DEVYGH  224 (301)
Q Consensus       219 D~~y~~  224 (301)
                      |+++..
T Consensus       222 D~~~~~  227 (465)
T d1ax4a_         222 DSARFC  227 (465)
T ss_dssp             ECTTHH
T ss_pred             ECcchh
Confidence            999864

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.8e-13  Score=122.48  Aligned_cols=175  Identities=13%  Similarity=0.077  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHH-HHHHHHHHh---cCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCC
Q 022213           87 PPARRAIADYLSRDLPYKLSADDVYVTLGCKQ-AVEVILSVL---ARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP  162 (301)
Q Consensus        87 ~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~-al~~~~~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  162 (301)
                      ..+..++.+++.+.+|.... ...++|+|+++ ++.+++.++   ..+++.|+++...|.++...+...|.+++.++...
T Consensus        93 ~~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~  171 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL  171 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence            35666677766665553322 34455555554 454555554   34679999999999999999999999998887533


Q ss_pred             -CCCCCCCHHHHHhhccc----CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCC-cc
Q 022213          163 -ERNWEVDLDAVEALADK----NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTP-MG  236 (301)
Q Consensus       163 -~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~-~~  236 (301)
                       .+.+.+|+++|++++++    ++.+|++++|+|++|.+.+   +++|+++|++||+++++|++|+........... ..
T Consensus       172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  248 (445)
T d3bc8a1         172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA  248 (445)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred             cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccccchhcc
Confidence             34577999999998853    5677888999999999998   999999999999999999999854321000000 00


Q ss_pred             ccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          237 LFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       237 ~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      .+.. . -++..|.+|.++.|. ..|+++..+
T Consensus       249 ~~~~-v-d~~~~s~hK~~~~p~-g~~~l~~~~  277 (445)
T d3bc8a1         249 RVGR-I-DAFVQSLDKNFMVPV-GGAIIAGFN  277 (445)
T ss_dssp             HHSC-C-CEEEEEHHHHHSCCS-SCEEEEESC
T ss_pred             CcCC-c-ceEEecCccccccCC-CCceeeeCC
Confidence            1111 0 177789999866553 456666644

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.9e-12  Score=113.27  Aligned_cols=151  Identities=13%  Similarity=0.120  Sum_probs=112.2

Q ss_pred             CCCCCEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcc-
Q 022213          105 LSADDVYVTLGCKQAVEVILSVLA---RPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALAD-  178 (301)
Q Consensus       105 ~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-  178 (301)
                      .+++.|++|+|+|+++++++.++.   ++||+|++..-.+.+  +...++..+.....+... +.+...+.+.+++.+. 
T Consensus        55 ~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  133 (382)
T d2bkwa1          55 SKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ  133 (382)
T ss_dssp             GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH
T ss_pred             CCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccccccc-CCCCccchhHHHHHhhh
Confidence            355679999999999999999996   579999998877765  345556778877766532 3344578888877664 


Q ss_pred             cCccEEEEcCCCCCcccCCCHHHHHHHHHHHH--hCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCC-
Q 022213          179 KNTAAMVIINPGNPCGNVFTYHHLQEIAEMAR--KLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWL-  255 (301)
Q Consensus       179 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~--~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-  255 (301)
                      .+++.+++++.+|.||...+   +.++.+.|+  .+++++++|.+.+.    +..+..+..++-+   +++.|..|+++ 
T Consensus       134 ~~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs~----g~~pid~~~~giD---~~~~s~~K~l~g  203 (382)
T d2bkwa1         134 NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI----GCEEFEFDEWGVD---FALTASQKAIGA  203 (382)
T ss_dssp             SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCC
T ss_pred             ccchheeeeecccccccccc---chhhhhhccccccceeeeeeccccc----ccccccccccCee---EEeecccccCcC
Confidence            46789999999999999999   555555544  45699999999987    3344445444433   88999999984 


Q ss_pred             CCcceeEEEEeeC
Q 022213          256 VPGWRFGWLVTND  268 (301)
Q Consensus       256 ~~G~rvG~~~~~~  268 (301)
                      -+|  +|+++++.
T Consensus       204 P~G--~g~l~vs~  214 (382)
T d2bkwa1         204 PAG--LSISLCSS  214 (382)
T ss_dssp             CSC--EEEEEECH
T ss_pred             CCc--hhhhhccH
Confidence            466  78888753

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.34  E-value=1e-12  Score=118.39  Aligned_cols=168  Identities=14%  Similarity=0.103  Sum_probs=120.4

Q ss_pred             CCCCEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCceEEEeecCC-CCCCCCCHHHHHhhccc---
Q 022213          106 SADDVYVTLGCKQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLP-ERNWEVDLDAVEALADK---  179 (301)
Q Consensus       106 ~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  179 (301)
                      +....++..|++.++.+++.+...  ++++|+++.-.|.++...+...|++++.++..+ .+.+.+|+++|++.+++   
T Consensus       129 ~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~  208 (434)
T d2z67a1         129 NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE  208 (434)
T ss_dssp             CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHH
T ss_pred             CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhh
Confidence            334566677777788778777753  789999999999999889999999998887533 33457999999998864   


Q ss_pred             --CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCccccc-CCCCCCCccccCCCCCEEEEecCcccCCC
Q 022213          180 --NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTF-GSIPYTPMGLFGSIVPVITLGSISKRWLV  256 (301)
Q Consensus       180 --~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~-~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  256 (301)
                        ++.++++++|++++|.+.+   +++|+++|++||+++++|++|+.... ..........+.-+   +++.|++|.++.
T Consensus       209 ~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D---~~~~s~hK~l~~  282 (434)
T d2z67a1         209 LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVD---AVVSSSDKNLLT  282 (434)
T ss_dssp             TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCS---EEEEEHHHHHCC
T ss_pred             cCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcc---eEEEcCcccccc
Confidence              4566788899999999998   88999999999999999999975331 11111111112111   778899998665


Q ss_pred             CcceeEEEEeeCCCCcccchhHHHHHHhhhc
Q 022213          257 PGWRFGWLVTNDPNGIFQKSGIIDSIKDCLS  287 (301)
Q Consensus       257 ~G~rvG~~~~~~~~~~~~~~~~~~~~~~~~~  287 (301)
                      | ...|++...+       ++++++++....
T Consensus       283 ~-~g~~~~~~~~-------~~~~~~~~~~~~  305 (434)
T d2z67a1         283 P-IGGGLVYSTD-------AEFIKEISLSYP  305 (434)
T ss_dssp             C-SSCEEEEESC-------HHHHHHHHTTSC
T ss_pred             C-CCccccccCc-------HHHHHHHHhhcc
Confidence            4 3345665543       346666665443

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=9.7e-12  Score=108.67  Aligned_cols=184  Identities=18%  Similarity=0.220  Sum_probs=126.6

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCC--CCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYATN--SGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      .+.++.|++++.+.    .+..+.+.  .-+.+.++.+.+++    +  .+.+.+++++|+|.++++++..++.+||+|+
T Consensus         9 ~~v~~~V~~am~~~----~~~hr~~~f~~i~~~~~~~l~~ll----~--~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vl   78 (348)
T d1iuga_           9 VRLHPKALEALARP----QLHHRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGERVL   78 (348)
T ss_dssp             CCCCHHHHHHHHSC----CCCTTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCCHHHHHHhcCC----CCCCCCHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCchHHHHHHHHHhcccccccce
Confidence            45677887776432    22222220  01234444455554    2  4556789999999999999999999999999


Q ss_pred             EcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-
Q 022213          136 LPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL-  212 (301)
Q Consensus       136 ~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-  212 (301)
                      +..-++.+  +...++.++.++..++.....  .++++.   ....+.+.+++++..+.||...+   +++|.++|+++ 
T Consensus        79 v~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~  150 (348)
T d1iuga_          79 VPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKN  150 (348)
T ss_dssp             EEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHC
T ss_pred             eecchHHHHHHHHHHHhcCcccccccccCCC--cccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhh
Confidence            88777553  456778889888888764432  244333   33457888999999999999999   67777777666 


Q ss_pred             -CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccC-CCCcceeEEEEeeC
Q 022213          213 -RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRW-LVPGWRFGWLVTND  268 (301)
Q Consensus       213 -~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~rvG~~~~~~  268 (301)
                       +.++++|.+.+...    .+..+..+.-+   +++.|..|++ +-||  +|++++++
T Consensus       151 ~~~l~~vDavss~g~----~~i~~d~~~iD---~~~~~sqK~l~gppG--~~~v~~s~  199 (348)
T d1iuga_         151 PEGLVGADMVTSLLV----GEVALEAMGVD---AAASGSQKGLMCPPG--LGFVALSP  199 (348)
T ss_dssp             TTCEEEEECTTTBTT----BCCCSGGGTCS---EEEEESSSTTCCCSC--EEEEEECH
T ss_pred             ccceeechhhhcccc----cccccccccCC---EEEeccccceecCCc--eeeeeech
Confidence             47889999988632    33344443333   8889999998 5566  78888754

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.30  E-value=2e-11  Score=107.90  Aligned_cols=185  Identities=12%  Similarity=0.149  Sum_probs=127.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCCCC-CEEEcCCHHHHHHHHHHHhcCCCCEEE
Q 022213           59 RTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLSAD-DVYVTLGCKQAVEVILSVLARPGANVL  135 (301)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl  135 (301)
                      ..++.|++++.    ....++++.  .+-+.+.|+.+++++      +++.. .|+++.|+|.+++.++.++..+|++|+
T Consensus        27 ~~~~~V~~Am~----~~~~~hr~~ef~~i~~~~r~~L~~ll------~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl   96 (388)
T d2ch1a1          27 NCSKRVLTAMT----NTVLSNFHAELFRTMDEVKDGLRYIF------QTENRATMCVSGSAHAGMEAMLSNLLEEGDRVL   96 (388)
T ss_dssp             CCCHHHHHHTT----SCCCCTTCHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCHHHHHHhC----cCCCCCCCHHHHHHHHHHHHHHHHHh------CCCCCeEEEEcCcHHHHHHHHHHHhcccccccc
Confidence            45677776653    222333432  112345666666666      23444 466778899999999999999999999


Q ss_pred             EcCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhhc-ccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 022213          136 LPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEALA-DKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKL  212 (301)
Q Consensus       136 ~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~  212 (301)
                      +..-++.+.  ....+.++...+.+...+..  ..+.+..+... ..+++.+++++.+|.||...+   +++|+++|+++
T Consensus        97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~  171 (388)
T d2ch1a1          97 IAVNGIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH  171 (388)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT
T ss_pred             ccccccccccchhhhhhhccccccccccccc--ccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc
Confidence            887777654  34566778887777765433  36666666554 347889999999999999999   78888889999


Q ss_pred             CCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          213 RVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       213 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      +.++++|.+.+...    .+..+..++-   .+++.|..|.++.|+ .+|+++.
T Consensus       172 ~~~~~vD~~ss~g~----~pid~~~~~~---d~~~~s~~K~~~gp~-G~g~~~~  217 (388)
T d2ch1a1         172 DCLLIVDAVASLCG----VPFYMDKWEI---DAVYTGAQKVLGAPP-GITPISI  217 (388)
T ss_dssp             TCEEEEECTTTBTT----BCCCTTTTTC---CEEECCCC-CCCCCS-SCEEEEE
T ss_pred             cceeeeeeeecccc----cccchhccCc---eEEEEccccccCCCC-eEEEEec
Confidence            99999999998733    3333443333   388889999865532 3566655

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.28  E-value=6.7e-12  Score=113.87  Aligned_cols=169  Identities=17%  Similarity=0.091  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEE-EcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHh-cCceEEEe--ecC
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVY-VTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQR-KQVEVRHF--DLL  161 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~-~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~--~~~  161 (301)
                      +.++++.+|+++        ..++.+ +++|++.++.+++.++++|||+|+++.-+|.+....... .+..+.+.  +.+
T Consensus        68 i~eae~~~A~~~--------ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~  139 (462)
T d1c4ka2          68 AVAAEKHAARVY--------NADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  139 (462)
T ss_dssp             HHHHHHHHHHHT--------TCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHh--------CCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence            578999999998        234554 456667777788999999999999999999887654443 34444443  332


Q ss_pred             CCCC------CCCCHHHHHh---------hcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccc
Q 022213          162 PERN------WEVDLDAVEA---------LADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLT  226 (301)
Q Consensus       162 ~~~~------~~~~~~~l~~---------~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~  226 (301)
                      +...      ..++.+.++.         +...+++.+++.+.+|-.|.+.+   +++|+++|+++|+++++|+++....
T Consensus       140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~~  216 (462)
T d1c4ka2         140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYE  216 (462)
T ss_dssp             TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred             cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhccc
Confidence            2111      1233333332         33345666666666778999999   8899999999999999999998644


Q ss_pred             cCC-CCCCCccccC----CC-CCEEEEecCcccCCCCcceeEEEEee
Q 022213          227 FGS-IPYTPMGLFG----SI-VPVITLGSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       227 ~~~-~~~~~~~~~~----~~-~~vi~~~s~SK~~~~~G~rvG~~~~~  267 (301)
                      ... ..........    .. .-.+++.|++|.++.++  .|.++..
T Consensus       217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~  261 (462)
T d1c4ka2         217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHK  261 (462)
T ss_dssp             GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEE
T ss_pred             cccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEe
Confidence            321 1111111111    11 12488999999976654  3555443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.25  E-value=1.4e-11  Score=108.27  Aligned_cols=186  Identities=12%  Similarity=0.099  Sum_probs=125.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCC--CCCCHHHHHHHHHHHhhhCCCCCC-CCCEEEcCCHHHHHHHHHHHhcCCCCEE
Q 022213           58 FRTAVEAEDAIVDAVRSGKFNCYAT--NSGIPPARRAIADYLSRDLPYKLS-ADDVYVTLGCKQAVEVILSVLARPGANV  134 (301)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l~~~gd~V  134 (301)
                      -+.|+.|+++|.    ....++++.  ..-+.+.|+.+++++      +++ ...|++++|+|++++.++..+..+|+++
T Consensus        27 ~~v~~~Vl~am~----~~~~~hr~~ef~~i~~~~r~~l~~ll------~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~   96 (377)
T d1vjoa_          27 SNAHPSVLQAMN----VSPVGHLDPAFLALMDEIQSLLRYVW------QTENPLTIAVSGTGTAAMEATIANAVEPGDVV   96 (377)
T ss_dssp             CCCCHHHHHHHS----SCCCCTTSHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhC----cCCCCCCCHHHHHHHHHHHHHHHHHh------CCCCCeEEEEcCcHHHHHHHHHHhcccccccc
Confidence            356677776653    223333332  112456666666666      333 3467888999999999999999999999


Q ss_pred             EEcCCCCcch--HHHHHhcCceEEEeecCCCCCCCCCHHHHHhh-cccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 022213          135 LLPRPGWPYY--EGIAQRKQVEVRHFDLLPERNWEVDLDAVEAL-ADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARK  211 (301)
Q Consensus       135 l~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~  211 (301)
                      ++..-.+...  .......+.....+......  ..+.+..+.. .+.+++.+++++.+|.||...+   +++|.++|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~  171 (377)
T d1vjoa_          97 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCRE  171 (377)
T ss_dssp             EEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred             ceeeechhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhh
Confidence            9887777643  33445556666655543322  2455555443 4457888899999999999999   8899999999


Q ss_pred             CCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEEe
Q 022213          212 LRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLVT  266 (301)
Q Consensus       212 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~  266 (301)
                      +|.++++|.+++...    .+..+..++.+   +++.|..|.++.|+ .+|+++.
T Consensus       172 ~g~~~~vDa~~~~g~----~~~~~~~~~~d---~~~~s~~K~~~gp~-g~~~~~~  218 (377)
T d1vjoa_         172 FGTLLLVDTVTSLGG----VPIFLDAWGVD---LAYSCSQKGLGCSP-GASPFTM  218 (377)
T ss_dssp             HTCEEEEECTTTTTT----SCCCTTTTTCS---EEECCSSSTTCSCS-SCEEEEE
T ss_pred             ccceEEEecchhhhh----hhhcccccccc---eeeecccccccCCC-EEEEecc
Confidence            999999999998622    33334333333   78889999865543 3555554

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=7.5e-12  Score=113.71  Aligned_cols=138  Identities=16%  Similarity=0.177  Sum_probs=106.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCE---------EEEcCCCCcchHHHHH
Q 022213           79 CYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGAN---------VLLPRPGWPYYEGIAQ  149 (301)
Q Consensus        79 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~---------Vl~~~p~~~~~~~~~~  149 (301)
                      .|+...+..+|++.+++++        ..+.+++++++++|...++.+++++||.         ++.....|........
T Consensus        69 ~Y~~~~~~~~le~~~a~l~--------G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  140 (467)
T d2v1pa1          69 AFSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ  140 (467)
T ss_dssp             CSSSCHHHHHHHHHHHHHT--------CCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH
T ss_pred             hhcCCchHHHHHHHHHHHH--------CCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH
Confidence            5877677889999999998        4567899999999999999999876554         4444555555566777


Q ss_pred             hcCceEEEeecCCC--------CCCCCCHHHHHhhccc----CccEEEEcCCCCC-cccCCCHHHHHHHHHHHHhCCCeE
Q 022213          150 RKQVEVRHFDLLPE--------RNWEVDLDAVEALADK----NTAAMVIINPGNP-CGNVFTYHHLQEIAEMARKLRVMV  216 (301)
Q Consensus       150 ~~g~~~~~~~~~~~--------~~~~~~~~~l~~~~~~----~~~~v~l~~p~np-tG~~~~~~~l~~i~~~~~~~~~~i  216 (301)
                      ..|..+..++....        ....+|++.+++.+++    .+.++++...+|. .|.+++.+.+++|.++|++||+++
T Consensus       141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l  220 (467)
T d2v1pa1         141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV  220 (467)
T ss_dssp             HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred             HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence            88999888876432        1245889999998753    3455666677664 467889999999999999999999


Q ss_pred             EEccCCcc
Q 022213          217 VADEVYGH  224 (301)
Q Consensus       217 i~D~~y~~  224 (301)
                      |+|+++..
T Consensus       221 ~~D~a~~~  228 (467)
T d2v1pa1         221 VMDSARFA  228 (467)
T ss_dssp             EEECTTHH
T ss_pred             EEechhhh
Confidence            99999753

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=1.9e-10  Score=104.35  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=135.7

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCC-------CCCCEEEcCCHHHHHHHHHHHhcC--------
Q 022213           65 EDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKL-------SADDVYVTLGCKQAVEVILSVLAR--------  129 (301)
Q Consensus        65 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-------~~~~i~~t~g~~~al~~~~~~l~~--------  129 (301)
                      -+.+...++ .....|.......++++.+.+|+.+..|.+-       ....-++|+|+|++...++.+..+        
T Consensus        91 ~~~~~~~~n-~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~  169 (476)
T d1js3a_          91 ADMLCGAIG-CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA  169 (476)
T ss_dssp             HHHHHHHHC-CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhc-ccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcc
Confidence            344444444 3333455444567899999999998776532       122468999999999888765432        


Q ss_pred             --CC---------CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccC------ccEEEEcCCCCC
Q 022213          130 --PG---------ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKN------TAAMVIINPGNP  192 (301)
Q Consensus       130 --~g---------d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~np  192 (301)
                        .|         -.|++++-.|.++...+...|+.+..++++  .++.+|+++|++.+++.      +.+|+.+..++.
T Consensus       170 ~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~  247 (476)
T d1js3a_         170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTS  247 (476)
T ss_dssp             HSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTT
T ss_pred             cccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCcc
Confidence              11         147788889999999999999999888874  45679999999988641      234666778999


Q ss_pred             cccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCC-CccccCCCCCEEEEecCcccCCCCcceeEEEEeeC
Q 022213          193 CGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYT-PMGLFGSIVPVITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       193 tG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~-~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                      ||.+=+   +++|+++|++|++|+.+|.+|+.+..--.... .+..+.. .+ -+..+++|.++.| ..+|.++..+
T Consensus       248 ~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~-aD-Sit~d~HK~l~~P-~~~g~~l~r~  318 (476)
T d1js3a_         248 CCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF-AD-SFNFNPHKWLLVN-FDCSAMWVKR  318 (476)
T ss_dssp             TCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG-CS-EEEECHHHHSSCC-SSCEEEEESC
T ss_pred             ceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcc-cc-eeeecCccccccC-Ccceeecccc
Confidence            999999   89999999999999999999987653221211 1111111 12 3445899996555 4677777755

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=5.3e-10  Score=98.76  Aligned_cols=210  Identities=16%  Similarity=0.150  Sum_probs=137.7

Q ss_pred             cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+||+..|.-..  .++ ..+.+.+++.++++...   +.+.....+.+..+++.+.....  ...+.+++++++
T Consensus        33 d~dG~~ylD~~~g~~~~--~lGh~hp~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~f~~sG  105 (387)
T d1vefa1          33 DAEGNEYIDCVGGYGVA--NLGHGNPEVVEAVKRQAETLM---AMPQTLPTPMRGEFYRTLTAILP--PELNRVFPVNSG  105 (387)
T ss_dssp             ETTSCEEEESSHHHHTC--TTCBTCHHHHHHHHHHHHHCC---CCCTTSCCHHHHHHHHHHHHTSC--TTEEEEEEESSH
T ss_pred             ECCCCEEEEcchhHHhh--hhcCCcHHHHHHHHHHHHhhc---ccccccCCchHHHHHHHhhhhcc--ccceeeccccCc
Confidence            34688899987752111  122 45788899999887532   22212234677777777655322  233579999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcC-------------ceEEEeecCCCCCCCCCHHHHHhhcccCc
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQRKQ-------------VEVRHFDLLPERNWEVDLDAVEALADKNT  181 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  181 (301)
                      ++|++.+++....  ...+|+...-+|++....+....             ..+..+|.       .|.+.+++.++++.
T Consensus       106 seA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~i  178 (387)
T d1vefa1         106 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEET  178 (387)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTE
T ss_pred             hHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCe
Confidence            9999999987742  34788888888886533322221             11223322       47899999887765


Q ss_pred             cEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcc
Q 022213          182 AAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGW  259 (301)
Q Consensus       182 ~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~  259 (301)
                      .+++ ..| ....|. ..+++.+++|.++|++||+++|.||+...+...+. ......++-.++++   +++|.++ .|+
T Consensus       179 Aavi-~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~~~~~~~v~PDi~---~~gK~l~-gG~  252 (387)
T d1vefa1         179 AAVI-LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGIVPDIL---TLAKALG-GGV  252 (387)
T ss_dssp             EEEE-ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHTCCCSEE---EECGGGG-TTS
T ss_pred             EEEE-EECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC-CcccccCCcCCcee---eecccCC-CCc
Confidence            5554 455 334565 57789999999999999999999999998755443 22333444445566   6689854 677


Q ss_pred             eeEEEEee
Q 022213          260 RFGWLVTN  267 (301)
Q Consensus       260 rvG~~~~~  267 (301)
                      -++.+++.
T Consensus       253 ~~~~~~~~  260 (387)
T d1vefa1         253 PLGVAVMR  260 (387)
T ss_dssp             SCEEEEEE
T ss_pred             cccccccc
Confidence            78887763

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.2e-10  Score=98.08  Aligned_cols=210  Identities=13%  Similarity=0.054  Sum_probs=133.1

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC-CCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYA-TNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+|||..|.-... --..++.+.+++.++++........ ...-...+.+.++++.        ..+.+++++++
T Consensus        37 D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sG  107 (404)
T d2byla1          37 DVEGRKYFDFLSSISAVN-QGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTG  107 (404)
T ss_dssp             ETTCCEEEESSHHHHTCT-TCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSH
T ss_pred             ECCCCEEEEecCCHHHHh-hcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc--------cccccccccCc
Confidence            346888999988732111 1124578999999998753321111 1111233444444443        45689999999


Q ss_pred             HHHHHHHHHHhcC----------CCCEEEEcCCCCcchHHHHHhcCc-------------eEEEeecCCCCCCCCCHHHH
Q 022213          117 KQAVEVILSVLAR----------PGANVLLPRPGWPYYEGIAQRKQV-------------EVRHFDLLPERNWEVDLDAV  173 (301)
Q Consensus       117 ~~al~~~~~~l~~----------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l  173 (301)
                      ++|.+.+++....          ...+|+...-+|++..........             .+..+|.       .|++.+
T Consensus       108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l  180 (404)
T d2byla1         108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPAL  180 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHH
T ss_pred             cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHH
Confidence            9999999987631          234677777677643222211111             1222221       478899


Q ss_pred             HhhcccCccEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          174 EALADKNTAAMVIINP-GNPCG-NVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       174 ~~~~~~~~~~v~l~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      ++.+.++..+.++..| ....| ...+++.+++|.++|++||+++|.||+...+...+. ......++-..+++   +++
T Consensus       181 ~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~a~~~~gv~PDi~---~~g  256 (404)
T d2byla1         181 ERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYENVRPDIV---LLG  256 (404)
T ss_dssp             HHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE---EEC
T ss_pred             HHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc-cchhhhcCCCCCEE---EEC
Confidence            9988765555566666 44445 456778999999999999999999999988755543 23333444444555   889


Q ss_pred             ccCCCCcceeEEEEee
Q 022213          252 KRWLVPGWRFGWLVTN  267 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~  267 (301)
                      |.++..++.+|.++++
T Consensus       257 K~l~gG~~p~~av~~~  272 (404)
T d2byla1         257 KALSGGLYPVSAVLCD  272 (404)
T ss_dssp             GGGGTTSSCCEEEEEC
T ss_pred             chhhCCCccceeeeec
Confidence            9977555899999884

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.13  E-value=9.4e-10  Score=98.44  Aligned_cols=208  Identities=17%  Similarity=0.111  Sum_probs=134.8

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-...-.. .++.+.++++++++....  +..   ...+...+++++....+   ..+.++++++++
T Consensus        48 D~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~--~~~---~~~~~~~la~~~~~~~~---~~~~v~f~~sGs  118 (427)
T d2gsaa_          48 DVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS--FGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGT  118 (427)
T ss_dssp             ETTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSC--CSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHH
T ss_pred             ECCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCc--ccc---chhHHHHHHHHHHhhCC---ccccccccCCcH
Confidence            346899999977732111112 457899999999874322  222   23556667777766432   346889999999


Q ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHH--------hcCc------------eEEEeecCCCCCCCCCHHHHHh
Q 022213          118 QAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQ--------RKQV------------EVRHFDLLPERNWEVDLDAVEA  175 (301)
Q Consensus       118 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~--------~~g~------------~~~~~~~~~~~~~~~~~~~l~~  175 (301)
                      +|++.+++....  ...+|+...-+|++......        ..+.            ....++       ..|++.+++
T Consensus       119 eA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~  191 (427)
T d2gsaa_         119 EACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHH
Confidence            999999997652  45788888888886422211        1111            111111       258899998


Q ss_pred             hcccC--ccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          176 LADKN--TAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       176 ~~~~~--~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      .+++.  ..+.++.-| ..-.|. ..+.+.+++|.++|++||+++|.||++..+. .+ .......++-.++++   .++
T Consensus       192 ~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g-~~~~~~~~gi~PDi~---~~g  266 (427)
T d2gsaa_         192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IA-YGGVQEKFGVTPDLT---TLG  266 (427)
T ss_dssp             HHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TB-TTCHHHHTTCCCSEE---EEC
T ss_pred             HHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ec-ccchHHhcCCCHHHH---hhh
Confidence            88752  334455566 333454 5567889999999999999999999998873 33 233334444445666   568


Q ss_pred             ccCCCCcceeEEEEee
Q 022213          252 KRWLVPGWRFGWLVTN  267 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~  267 (301)
                      |.++ .|+-+|.++++
T Consensus       267 K~lg-gG~p~~a~~~~  281 (427)
T d2gsaa_         267 KIIG-GGLPVGAYGGK  281 (427)
T ss_dssp             GGGG-TTSCCEEEEEC
T ss_pred             hccC-CCcceeeeeeh
Confidence            8854 57888988874

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.02  E-value=1.6e-10  Score=100.97  Aligned_cols=197  Identities=10%  Similarity=-0.021  Sum_probs=122.3

Q ss_pred             CeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC-----CCCCCC-CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           43 PVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK-----FNCYAT-NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        43 ~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~-----~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      +.+||+-| |     -..|+.|+++|.+.+-+..     ....+. ..-..++.+.+.+.+.+.++.. +...|++++|+
T Consensus         3 ~~~~F~pG-P-----~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs   75 (361)
T d2c0ra1           3 RAYNFNAG-P-----AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGG   75 (361)
T ss_dssp             CCEECCSS-S-----CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSH
T ss_pred             CCcccCCC-C-----cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCC
Confidence            45678666 2     4668899999988764210     000111 0112233333444444434422 33367777776


Q ss_pred             HHH-HHHHHHHhcCCCCEEEEcCCCCc--chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCc
Q 022213          117 KQA-VEVILSVLARPGANVLLPRPGWP--YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPC  193 (301)
Q Consensus       117 ~~a-l~~~~~~l~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  193 (301)
                      +.+ +++++..+..+|+++++..-...  .+...++..|..+..+.......  ++++.+++.++..+.    .+.+|.|
T Consensus        76 ~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~v~~~t  149 (361)
T d2c0ra1          76 ASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNY--MTLPKLQEIQLQDNA----AYLHLTS  149 (361)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT--CSCCCGGGCCCCTTE----EEEEEES
T ss_pred             chHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccc--cchhhhhhhcccCcc----eEEEEec
Confidence            555 56666677788898886654433  34567778898888887654433  677777776655432    2345778


Q ss_pred             ccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          194 GNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       194 G~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      |...+   +++|.++|+++|+++++|.+.+.    +..+..+..++     +.+.|.+|.++.+|.-.+++
T Consensus       150 g~~~~---~~~i~~~~~~~~al~~vDavss~----g~~~id~~~~d-----i~~~s~~k~~~~~~~~~~~~  208 (361)
T d2c0ra1         150 NETIE---GAQFKAFPDTGSVPLIGDMSSDI----LSRPFDLNQFG-----LVYAGAQKNLGPSGVTVVIV  208 (361)
T ss_dssp             EETTT---TEECSSCCCCTTSCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCSSCEEEEE
T ss_pred             cccee---cceEEEeeccCCceEEEEeeccc----cccccccccce-----eEEEecccccccccCcEEEE
Confidence            98888   66778889999999999999986    22333444332     56678899988877443333

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=9.5e-09  Score=91.77  Aligned_cols=230  Identities=15%  Similarity=0.079  Sum_probs=137.4

Q ss_pred             cCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCK  117 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~  117 (301)
                      ..+++.+||+..|.-... --..++.+.++++++++......+..  ...+-...+++.+....+  ...+.++++++++
T Consensus        39 D~dG~~ylD~~~g~~~~~-lGh~~p~i~~Ai~~q~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGs  113 (429)
T d1s0aa_          39 LSDGRRLVDGMSSWWAAI-HGYNHPQLNAAMKSQIDAMSHVMFGG--ITHAPAIELCRKLVAMTP--QPLECVFLADSGS  113 (429)
T ss_dssp             ETTSCEEEESSTTTTTCT-TCBSCHHHHHHHHHHHHHCSCCCCSS--EECHHHHHHHHHHHHHSC--TTCCEEEEESSHH
T ss_pred             ECCCCEEEECcccHHHHh-hcCCcHHHHHHHHHHHHhcCCcccCC--ccchHHHHHHHHHHhhhc--cCcceeeeccccc
Confidence            446889999988733211 11256889999999887533211111  112333334444433222  2456799999999


Q ss_pred             HHHHHHHHHhc-------CCCCEEEEcCCCCcchHHHHHhc-Cc-------------eEEEeecCC-CCCC---CCCHHH
Q 022213          118 QAVEVILSVLA-------RPGANVLLPRPGWPYYEGIAQRK-QV-------------EVRHFDLLP-ERNW---EVDLDA  172 (301)
Q Consensus       118 ~al~~~~~~l~-------~~gd~Vl~~~p~~~~~~~~~~~~-g~-------------~~~~~~~~~-~~~~---~~~~~~  172 (301)
                      +|++.+++...       ....+|+...-+|++........ +.             .....+... ....   ..+.+.
T Consensus       114 eA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (429)
T d1s0aa_         114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG  193 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred             cchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhh
Confidence            99999987663       13357888888887643222111 10             111111111 1111   123444


Q ss_pred             HHhhccc--CccEEEEcCC--CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEE
Q 022213          173 VEALADK--NTAAMVIINP--GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL  247 (301)
Q Consensus       173 l~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~  247 (301)
                      +++.+..  ...+.++..|  ++-.|. ..+++.+++|.++|++||+++|.||++..+...+. ......++-.++++  
T Consensus       194 ~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~~~~~~~v~PDi~--  270 (429)
T d1s0aa_         194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAEIAPDIL--  270 (429)
T ss_dssp             HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE--
T ss_pred             hhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc-ccccccceeccccc--
Confidence            4443332  3445556666  344454 56889999999999999999999999999865543 33444444445566  


Q ss_pred             ecCcccCCCCcceeEEEEeeCCCCcccchhHHHHHHh
Q 022213          248 GSISKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKD  284 (301)
Q Consensus       248 ~s~SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~  284 (301)
                       +++|.++..++.+|.+++..        ++.+.+..
T Consensus       271 -~~gK~l~gG~~p~~av~~~~--------~i~~~~~~  298 (429)
T d1s0aa_         271 -CLGKALTGGTMTLSATLTTR--------EVAETISN  298 (429)
T ss_dssp             -EECGGGGTSSSCCEEEEECH--------HHHHHHHT
T ss_pred             -ccccccccccccccchhhHH--------HHHhccCC
Confidence             66999776778999998843        46666543

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.4e-09  Score=94.65  Aligned_cols=221  Identities=11%  Similarity=0.049  Sum_probs=131.2

Q ss_pred             cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+||+..|.-..  .++ .++.+.+++.++++.....  .......+.+..+++.+.+..+ .-..+.+++++++
T Consensus        36 D~dG~~ylD~~~g~~~~--~lGh~~p~i~~ai~~q~~~~~~~--~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sG  110 (425)
T d1sffa_          36 DVEGREYLDFAGGIAVL--NTGHLHPKVVAAVEAQLKKLSHT--CFQVLAYEPYLELCEIMNQKVP-GDFAKKTLLVTTG  110 (425)
T ss_dssp             ETTCCEEEESSHHHHTC--TTCBTCHHHHHHHHHHTTTCSCC--CTTTEECHHHHHHHHHHHHHSS-CSSCEEEEEESSH
T ss_pred             eCCCCEEEEcCcCHHhh--cccCCcHHHHHHHHHHHhhcCCc--ccccccCcHHHHHHHHHHhhhh-hcccceeeeeccc
Confidence            44688999998872111  122 4578889999988743211  1111223455666776665432 1123579999999


Q ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHh-cCce-------------EEEeecC--CCCCCCC----CHHHHH
Q 022213          117 KQAVEVILSVLAR--PGANVLLPRPGWPYYEGIAQR-KQVE-------------VRHFDLL--PERNWEV----DLDAVE  174 (301)
Q Consensus       117 ~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~-~g~~-------------~~~~~~~--~~~~~~~----~~~~l~  174 (301)
                      ++|.+.+++....  ...+|+...-+|++....... .|..             ....+..  .......    +.+.+.
T Consensus       111 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (425)
T d1sffa_         111 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF  190 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred             cchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHH
Confidence            9999999987753  346888888888875443332 2210             1111110  0000000    011111


Q ss_pred             hhc-ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCc
Q 022213          175 ALA-DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSIS  251 (301)
Q Consensus       175 ~~~-~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~S  251 (301)
                      ... .....+.++.-| ....|. ..+++.+++|.++|++||+++|.||++..+...+.. .....++-..+++   +++
T Consensus       191 ~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~-~a~~~~gv~PDi~---~~g  266 (425)
T d1sffa_         191 KNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL-FAMEQMGVAPDLT---TFA  266 (425)
T ss_dssp             HHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGTTSCCSEE---EEC
T ss_pred             HhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchh-hHHHhcCCCccce---ecc
Confidence            111 122344555666 333454 568899999999999999999999999986554432 2333444444555   689


Q ss_pred             ccCCCCcceeEEEEeeC
Q 022213          252 KRWLVPGWRFGWLVTND  268 (301)
Q Consensus       252 K~~~~~G~rvG~~~~~~  268 (301)
                      |.++ .|+.+|.++++.
T Consensus       267 K~l~-gG~P~~av~~~~  282 (425)
T d1sffa_         267 KSIA-GGFPLAGVTGRA  282 (425)
T ss_dssp             GGGG-TSSCCEEEEEEH
T ss_pred             cccC-CCcceEEEEEcH
Confidence            9964 578999999854

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.5e-09  Score=94.87  Aligned_cols=229  Identities=12%  Similarity=0.075  Sum_probs=138.8

Q ss_pred             cHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---CCCC---HHHHHHHHHHH
Q 022213           24 TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---NSGI---PPARRAIADYL   97 (301)
Q Consensus        24 ~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~---~~lr~~ia~~l   97 (301)
                      +|.++++...+.     ...-|+|-..+.      .+++.+.+++...+.+.-.-.|+.   -.|.   .++.+-..+..
T Consensus        13 ei~~~i~~e~~r-----q~~~i~LiaSEN------~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra   81 (416)
T d1dfoa_          13 ELWQAMEQEKVR-----QEEHIELIASEN------YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRA   81 (416)
T ss_dssp             HHHHHHHHHHHH-----HHHSEECCTTCC------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HHcCceEecCcc------cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHH
Confidence            455555533322     356788866653      245678888776665321111221   1232   33333222333


Q ss_pred             hhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH---HH--HhcCceEEEeecCCCCCCCCCHHH
Q 022213           98 SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG---IA--QRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        98 ~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---~~--~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      .+.++  ....+|- ..+++.|...++.++++|||+|+..+..+.++..   .+  .....+...++++.  ...+|.++
T Consensus        82 ~~lF~--a~~anVq-p~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~  156 (416)
T d1dfoa_          82 KELFG--ADYANVQ-PHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYAD  156 (416)
T ss_dssp             HHHHT--CSEEECC-CSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHH
T ss_pred             HHHhC--CCcceee-cccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC--ccCccHHH
Confidence            33233  2222232 4677899999999999999999988887765422   11  12224556666543  34599999


Q ss_pred             HHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecC
Q 022213          173 VEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       173 l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +++.+.. +++.+++..-.+|  ..++   ++++.++|.+.|.++++|.++.. ++-++..+.|+.. . +   ++.+|+
T Consensus       157 l~~~a~~~kPklIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-a-D---vvt~tT  226 (416)
T d1dfoa_         157 LEKQAKEHKPKMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-A-H---VVTTTT  226 (416)
T ss_dssp             HHHHHHHHCCSEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-S-S---EEEEES
T ss_pred             HHHHHHHhccceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-c-c---eeeeeh
Confidence            9987754 7888776544433  4556   77777778899999999999984 3333444444433 2 2   889999


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +|+  ++|-|-|.+......     +++.+++.+.
T Consensus       227 hKt--lrGPrggiI~~~~~~-----~~~~~~i~~a  254 (416)
T d1dfoa_         227 HKT--LAGPRGGLILAKGGS-----EELYKKLNSA  254 (416)
T ss_dssp             SST--TCCCSCEEEEESSCC-----HHHHHHHHHH
T ss_pred             hhc--ccCCCceEEEeccch-----HhHHHHHHhh
Confidence            999  467788998875432     3466666543

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.92  E-value=2.4e-08  Score=88.45  Aligned_cols=217  Identities=14%  Similarity=0.104  Sum_probs=126.5

Q ss_pred             cCCCCCeeeccCCCCCCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGDPTAFPCFR-TAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+||+..|.-..  .++ .++.+.++++++++...   |..........+.+++++...    ...+.+.+++++
T Consensus        35 D~dG~~ylD~~~g~~~~--~lGh~~p~v~~Ai~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~sg  105 (404)
T d1z7da1          35 DVNDKRYYDFLSAYSSV--NQGHCHPNILNAMINQAKNLT---ICSRAFFSVPLGICERYLTNL----LGYDKVLMMNTG  105 (404)
T ss_dssp             ETTCCEEEESSHHHHTT--TTCBTCHHHHHHHHHHHTTCS---CCCTTSEEHHHHHHHHHHHHH----HTCSEEEEESSH
T ss_pred             ECCCCEEEEccccHHHH--hhhcCcHHHHHHHHHHHHhCC---CcccccchHHHHHHHHhhhhc----cccceeeeeccc
Confidence            34688999988772211  122 45789999999887432   222112233344444444442    245679999999


Q ss_pred             HHHHHHHHHHhcC----------CCCEEEEcCCCCcchHHHHHhcCce----EEEeecCCC--CCCCCCHHHHHhhcccC
Q 022213          117 KQAVEVILSVLAR----------PGANVLLPRPGWPYYEGIAQRKQVE----VRHFDLLPE--RNWEVDLDAVEALADKN  180 (301)
Q Consensus       117 ~~al~~~~~~l~~----------~gd~Vl~~~p~~~~~~~~~~~~g~~----~~~~~~~~~--~~~~~~~~~l~~~~~~~  180 (301)
                      +++.+.+++....          ...+++...-+|++...........    ....+..+.  ..-.-+.+.++..+...
T Consensus       106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  185 (404)
T d1z7da1         106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDP  185 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTST
T ss_pred             cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCC
Confidence            9999998876531          2246777777777543322221110    000000000  00013566777766655


Q ss_pred             ccEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCc
Q 022213          181 TAAMVIINP-GNPCGNV-FTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPG  258 (301)
Q Consensus       181 ~~~v~l~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G  258 (301)
                      ..+.++.-| ....|.. .+++.+++|.++|++||+++|.||+...+...+. ......++-..+++   +++|.++..+
T Consensus       186 ~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~-~~~~e~~gv~PDiv---t~gK~l~gG~  261 (404)
T d1z7da1         186 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNVKPDVI---LLGKALSGGH  261 (404)
T ss_dssp             TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGTCCCSEE---EECGGGGTTS
T ss_pred             CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc-cccccccCCCCCEE---EEcccccCCC
Confidence            556666666 4455664 5567789999999999999999999988755443 33344444445566   7899976555


Q ss_pred             ceeEEEEee
Q 022213          259 WRFGWLVTN  267 (301)
Q Consensus       259 ~rvG~~~~~  267 (301)
                      +-+|.++++
T Consensus       262 ~p~~~v~~~  270 (404)
T d1z7da1         262 YPISAVLAN  270 (404)
T ss_dssp             SCCEEEEEC
T ss_pred             CCcccccch
Confidence            889999874

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.91  E-value=5.9e-09  Score=93.26  Aligned_cols=218  Identities=13%  Similarity=0.065  Sum_probs=132.0

Q ss_pred             cCCCCCeeeccCCC-CCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCH
Q 022213           38 KNDPRPVVPLGYGD-PTAFPCFRTAVEAEDAIVDAVRSGKFNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLGC  116 (301)
Q Consensus        38 ~~~~~~~i~l~~g~-p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~  116 (301)
                      ..+++.+||+..|. ....  -..++.+.+++.++++...   |.......+.+..+|+.|.+...  -..+.+++++++
T Consensus        37 D~dG~~ylD~~~g~~~~~l--Gh~~p~v~~ai~~q~~~~~---~~~~~~~~~~~~~la~~L~~~~~--~~~~~v~f~~sG  109 (431)
T d1zoda1          37 DADGRAILDFTSGQMSAVL--GHCHPEIVSVIGEYAGKLD---HLFSEMLSRPVVDLATRLANITP--PGLDRALLLSTG  109 (431)
T ss_dssp             CTTCCEEEETTHHHHTCTT--CBTCHHHHHHHHHHHHHCC---CCCTTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCH
T ss_pred             ECCCCEEEEcccCHHhhhh--cCCCHHHHHHHHHHHhhcc---ccccccccHHHHHHHHHHHHhCC--cccceeeecccc
Confidence            44688999997762 1111  1245789999999987543   22222233455567776655332  134689999999


Q ss_pred             HHHHHHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCc------------eEEEeecCCCC--C-----CCCCH---HH
Q 022213          117 KQAVEVILSVLA--RPGANVLLPRPGWPYYEGIAQRKQV------------EVRHFDLLPER--N-----WEVDL---DA  172 (301)
Q Consensus       117 ~~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~------------~~~~~~~~~~~--~-----~~~~~---~~  172 (301)
                      ++|.+.+++...  ...++|+...-+|++........+.            ....++.....  .     ...+.   +.
T Consensus       110 seA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (431)
T d1zoda1         110 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  189 (431)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHH
Confidence            999999999764  2457888888888875433332221            11122211100  0     00112   22


Q ss_pred             HHhhc---ccCccEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEE
Q 022213          173 VEALA---DKNTAAMVIINP-GNPCGN-VFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITL  247 (301)
Q Consensus       173 l~~~~---~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~  247 (301)
                      +...+   ..+..+.++.-| ..-.|. ..+++.+++|.++|++||+++|.||++..+...+..+ ....++-.++++  
T Consensus       190 ~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~~~~gv~PDi~--  266 (431)
T d1zoda1         190 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDIL--  266 (431)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE--
T ss_pred             HHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc-ccccCCCCcchh--
Confidence            22222   123445566666 222344 5688899999999999999999999999876555433 333344445566  


Q ss_pred             ecCcccCCCCcceeEEEEee
Q 022213          248 GSISKRWLVPGWRFGWLVTN  267 (301)
Q Consensus       248 ~s~SK~~~~~G~rvG~~~~~  267 (301)
                       +++|.+ ..|+-++.+++.
T Consensus       267 -~~gK~l-~gG~p~~av~~~  284 (431)
T d1zoda1         267 -TLSKTL-GAGLPLAAIVTS  284 (431)
T ss_dssp             -EECHHH-HTTSSCEEEEEC
T ss_pred             -cccccc-ccccccceeeee
Confidence             679984 466788888774

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.90  E-value=1e-08  Score=89.12  Aligned_cols=227  Identities=13%  Similarity=0.104  Sum_probs=137.3

Q ss_pred             cHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCC---CCC---CHHHHHHHHHHH
Q 022213           24 TVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNCYAT---NSG---IPPARRAIADYL   97 (301)
Q Consensus        24 ~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~lr~~ia~~l   97 (301)
                      ++.++++.-.+.     ...-|+|-..+.      .+++.+.+++...+.+.-.-.|+.   -.|   +.++.+...+..
T Consensus        10 ei~~~i~~e~~r-----q~~~l~LiaSEN------~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra   78 (405)
T d1kl1a_          10 QVFAAIEQERKR-----QHAKIELIASEN------FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERA   78 (405)
T ss_dssp             HHHHHHHHHHHH-----HHHSEECCTTCC------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HHcCceEeccCC------cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHH
Confidence            455555433322     356788866653      235678888777664321111221   113   233333333333


Q ss_pred             hhhCCCCCCCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH-----HHHhcCceEEEeecCCCCCCCCCHHH
Q 022213           98 SRDLPYKLSADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG-----IAQRKQVEVRHFDLLPERNWEVDLDA  172 (301)
Q Consensus        98 ~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (301)
                      .+-++  ...-+|- ..+++.|...++.+|++|||+|+..++...++..     .......+.+.++++++ ++.+|.++
T Consensus        79 ~~lF~--a~~anVq-p~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~  154 (405)
T d1kl1a_          79 KQLFG--AEHANVQ-PHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDD  154 (405)
T ss_dssp             HHHHC--CSEEECC-CSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHH
T ss_pred             HHHhC--CCcceee-ccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHH
Confidence            33233  2222222 4556888999999999999999988766654321     11222356666777654 45799999


Q ss_pred             HHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCCEEEEecC
Q 022213          173 VEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVPVITLGSI  250 (301)
Q Consensus       173 l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~vi~~~s~  250 (301)
                      +++.++. +++.+++..-.+|-  .++   ++++.++|.+.|.+++.|-++.. ++-++..+.|+. +..    ++..|+
T Consensus       155 l~~~a~~~kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aD----vvt~tT  224 (405)
T d1kl1a_         155 VREKARLHRPKLIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAH----FVTTTT  224 (405)
T ss_dssp             HHHHHHHHCCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCS----EEEEES
T ss_pred             HHHHHHhhCcceEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh-hhh----heeccc
Confidence            9998765 78877765544443  445   67777777789999999999974 444454455553 221    778899


Q ss_pred             cccCCCCcceeEEEEeeCCCCcccchhHHHHHHhh
Q 022213          251 SKRWLVPGWRFGWLVTNDPNGIFQKSGIIDSIKDC  285 (301)
Q Consensus       251 SK~~~~~G~rvG~~~~~~~~~~~~~~~~~~~~~~~  285 (301)
                      +|+  ++|-|-|.+...        .++.+++.+.
T Consensus       225 hKt--lrGPrgg~I~~~--------~~~~~~i~~a  249 (405)
T d1kl1a_         225 HKT--LRGPRGGMILCQ--------EQFAKQIDKA  249 (405)
T ss_dssp             SST--TCCCSCEEEEEC--------HHHHHHHHHH
T ss_pred             ccc--ccCCCCceEEec--------chhHHHHHhh
Confidence            999  467788988763        2456666554

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.88  E-value=2e-09  Score=93.60  Aligned_cols=193  Identities=10%  Similarity=-0.028  Sum_probs=117.7

Q ss_pred             CCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-CCC----CC-----CCCCHHHHHHHHHHHhhhCCCCCCCC-CE
Q 022213           42 RPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-NCY----AT-----NSGIPPARRAIADYLSRDLPYKLSAD-DV  110 (301)
Q Consensus        42 ~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~Y----~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~-~i  110 (301)
                      +.+.||+-|-      -+.|++|.+++.+.+-+-.. ...    +.     .+-+.+.|+.+++++      +++.+ .|
T Consensus         2 ~~~~nF~pGP------~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~------~~~~~~~i   69 (360)
T d1w23a_           2 KQVFNFNAGP------SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL------QIPNDYQI   69 (360)
T ss_dssp             CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH------TCCTTEEE
T ss_pred             CceeEeCCCC------cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh------CCCCCCEE
Confidence            3577888772      35678999999887642100 000    00     001355777888887      34444 68


Q ss_pred             EEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCCc--chHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEc
Q 022213          111 YVTLGCKQAVEVILSVL-ARPGANVLLPRPGWP--YYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVII  187 (301)
Q Consensus       111 ~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  187 (301)
                      ++++|++++...+.... ..+++.+++....+.  .+...++..+...+........  ...++.++..... ..   +.
T Consensus        70 ~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~---~~  143 (360)
T d1w23a_          70 LFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQLN-EN---DA  143 (360)
T ss_dssp             EEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCCC-TT---EE
T ss_pred             EEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhcccc-cc---cc
Confidence            88888877776555554 467788887766554  3445556667666655443222  1333444443322 22   23


Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEEE
Q 022213          188 NPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWLV  265 (301)
Q Consensus       188 ~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~~  265 (301)
                      +..|.||.+.+   +.+|.++|+++|+++|+|.+.+...    .+..+..++     +.+.+++|..+++|. .|+++
T Consensus       144 ~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~----~~id~~~~~-----vd~~~~~~~k~~~~~-~~~~~  208 (360)
T d1w23a_         144 YLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDILS----RPLKVNQFG-----MIYAGAQKNLGPSGV-TVVIV  208 (360)
T ss_dssp             EEEEESEETTT---TEECSSCCCCCSSCEEEECTTTTTS----SCCCGGGCS-----EEEEETTTTTSCTTC-EEEEE
T ss_pred             eeEecCCcccc---ceeeeeccccceeeEEeeccccccc----ccccccccc-----ceEEeeccccccCCc-ceeeE
Confidence            44567899998   7788889999999999999998733    333444443     566688888766553 34443

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.82  E-value=2.4e-08  Score=88.22  Aligned_cols=222  Identities=11%  Similarity=0.039  Sum_probs=124.1

Q ss_pred             ccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHH
Q 022213           23 VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC------YATNSGIPPARRAIADY   96 (301)
Q Consensus        23 ~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~   96 (301)
                      .++.++++.-.+.     ...-|+|-..+.      .+++.+.+++...+.+.-...      |+-.+.+.++.....+.
T Consensus        13 ~ei~~~i~~e~~r-----q~~~l~LiaSEN------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r   81 (463)
T d2a7va1          13 PEMWELLQREKDR-----QCRGLELIASEN------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRR   81 (463)
T ss_dssp             HHHHHHHHHHHHH-----HHHSEECCTTCC------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----HhcCeeEeccCC------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHH
Confidence            3455555443321     345688866653      345778888777665321111      22223355555444444


Q ss_pred             HhhhCCCCCCCCCE-EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCc--eEEEeecCCCCC
Q 022213           97 LSRDLPYKLSADDV-YVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEG--------IAQRKQV--EVRHFDLLPERN  165 (301)
Q Consensus        97 l~~~~~~~~~~~~i-~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~  165 (301)
                      ..+.++.+.....| +=..+++.|...++.+|++|||+|+..++...++..        .....|.  +...+.+++ .+
T Consensus        82 a~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~-~~  160 (463)
T d2a7va1          82 ALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KT  160 (463)
T ss_dssp             HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TT
T ss_pred             HHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC-CC
Confidence            44444422111111 224557889999999999999999977766654421        1112222  333344433 34


Q ss_pred             CCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCC
Q 022213          166 WEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       166 ~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~  243 (301)
                      ..+|.+++++.++. +++++++..-.+|-  .++   ++++.++|.+-|.+++.|-++.. ++-++..+.|+.. . +  
T Consensus       161 ~~IDyd~~~~~a~~~kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-a-D--  231 (463)
T d2a7va1         161 GLIDYNQLALTARLFRPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A-D--  231 (463)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-C-S--
T ss_pred             CcCcHHHHHHHHhhcCCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-h-h--
Confidence            56999999998765 78887765545443  445   66777777799999999999974 3434544555532 2 2  


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                       |+.+|++|+  ++|-|-|.+...+
T Consensus       232 -vvt~tTHKT--lrGPrgGiIl~~~  253 (463)
T d2a7va1         232 -IVTTTTHKT--LRGARSGLIFYRK  253 (463)
T ss_dssp             -EEEEESSGG--GCSCSCEEEEEEC
T ss_pred             -hhhchhhhh--hcCCCceEEEEcc
Confidence             888899999  5788888888754

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.79  E-value=8.6e-08  Score=84.89  Aligned_cols=222  Identities=12%  Similarity=0.051  Sum_probs=136.9

Q ss_pred             ccHHHHHHHHHhhcccCCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCC-----CC-CCCCCCCHHHHHHHHHH
Q 022213           23 VTVKTSLASIIDSVNKNDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKF-----NC-YATNSGIPPARRAIADY   96 (301)
Q Consensus        23 ~~i~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~-----~~-Y~~~~g~~~lr~~ia~~   96 (301)
                      .+|.++++...+.     ...-|+|-..+.      .+++.+.+++...+.+.-.     .+ |+-.+.+.++.....+.
T Consensus        17 ~ei~~~i~~e~~r-----q~~~l~LIaSEN------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r   85 (470)
T d1rv3a_          17 AEVYDIIKKESNR-----QRVGLELIASEN------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKR   85 (470)
T ss_dssp             HHHHHHHHHHHHH-----HHSSEECCTTCC------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----HHcCceEecCCC------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHH
Confidence            3555555543332     356688866653      3456788887776653211     11 22212234444444444


Q ss_pred             HhhhCCCCCCCCCEEE-cCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----------HHhcCceEEEeecCCCCC
Q 022213           97 LSRDLPYKLSADDVYV-TLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGI----------AQRKQVEVRHFDLLPERN  165 (301)
Q Consensus        97 l~~~~~~~~~~~~i~~-t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----------~~~~g~~~~~~~~~~~~~  165 (301)
                      ..+.++.+.+...+=+ ..+++.|...++.+|++|||+|+..+....++..-          ......+...++++++ .
T Consensus        86 a~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~  164 (470)
T d1rv3a_          86 ALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-T  164 (470)
T ss_dssp             HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-T
T ss_pred             HHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-c
Confidence            4444543222223322 56678999999999999999999876655443211          1111245667777654 3


Q ss_pred             CCCCHHHHHhhccc-CccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcc-cccCCCCCCCccccCCCCC
Q 022213          166 WEVDLDAVEALADK-NTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGH-LTFGSIPYTPMGLFGSIVP  243 (301)
Q Consensus       166 ~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~~~~~~  243 (301)
                      ..+|.+++++.++. +++++++..-.+|-  .++   ++++.++|.+.|.+++.|-++.. ++-++..+.|+. +. +  
T Consensus       165 ~~IDyd~l~~~a~~~kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~-~a-D--  235 (470)
T d1rv3a_         165 GYIDYDRLEENARLFHPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HC-H--  235 (470)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TC-S--
T ss_pred             CcccHHHHHHHHHhhCcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhh-ee-e--
Confidence            46999999997765 78887765545443  455   66777777799999999999974 333444455553 22 2  


Q ss_pred             EEEEecCcccCCCCcceeEEEEeeC
Q 022213          244 VITLGSISKRWLVPGWRFGWLVTND  268 (301)
Q Consensus       244 vi~~~s~SK~~~~~G~rvG~~~~~~  268 (301)
                       |+.+|++|+  ++|-|-|.+....
T Consensus       236 -vvt~tTHKt--lrGPrgGiI~~~~  257 (470)
T d1rv3a_         236 -VVTTTTHKT--LRGCRAGMIFYRR  257 (470)
T ss_dssp             -EEEEESSGG--GCCCSCEEEEEEC
T ss_pred             -eeeeehhhh--ccCCcceEEEEcc
Confidence             889999999  5777889888754

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=3.5e-09  Score=91.70  Aligned_cols=192  Identities=12%  Similarity=-0.017  Sum_probs=119.0

Q ss_pred             eeeccCCCCCCCCCCCChHHHHHHHHHHHhcCCCCC-----CCCCCC------CHHHHHHHHHHHhhhCCCCCC-CCCEE
Q 022213           44 VVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGKFNC-----YATNSG------IPPARRAIADYLSRDLPYKLS-ADDVY  111 (301)
Q Consensus        44 ~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-----Y~~~~g------~~~lr~~ia~~l~~~~~~~~~-~~~i~  111 (301)
                      ++||+-| |     ...|+.|.+++.+.+.+.....     ... .+      +.+.|+.+++++      +.+ ++.|+
T Consensus         2 ~~nF~pG-P-----~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sH-Rs~ef~~l~~~~r~~l~~l~------~~~~~~~v~   68 (360)
T d1bjna_           2 IFNFSSG-P-----AMLPAEVLKQAQQELRDWNGLGTSVMEVSH-RGKEFIQVAEEAEKDFRDLL------NVPSNYKVL   68 (360)
T ss_dssp             CEECCSS-S-----CCCCHHHHHHHHHTSSSGGGSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHH------TCCTTEEEE
T ss_pred             eEEeCCC-C-----cCCCHHHHHHHHHHHhhhcccCccccccCc-CCHHHHHHHHHHHHHHHHHh------CCCCCCEEE
Confidence            6788766 2     4568899999988765211000     011 11      356677777777      333 34688


Q ss_pred             EcCCHHHHHHHHHH-HhcCCCCEEEEcCCCCcc--hHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEEEEcC
Q 022213          112 VTLGCKQAVEVILS-VLARPGANVLLPRPGWPY--YEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAMVIIN  188 (301)
Q Consensus       112 ~t~g~~~al~~~~~-~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~  188 (301)
                      +++|++++...+.. .+..+++.+++..-.+..  +....+..+...+........  ..+.+.++..+..+++.+++++
T Consensus        69 ~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~  146 (360)
T d1bjna_          69 FCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQLSDNAAYMHY  146 (360)
T ss_dssp             EESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCCCSSCSCEEE
T ss_pred             EECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--CcchhhhhhhhccCCceeEEEe
Confidence            88888776655544 445677888887766654  344555566665555433222  2555666666777788888888


Q ss_pred             CCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccccCCCCCEEEEecCcccCCCCcceeEEE
Q 022213          189 PGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGLFGSIVPVITLGSISKRWLVPGWRFGWL  264 (301)
Q Consensus       189 p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~rvG~~  264 (301)
                      .+|.||...+.   +.+  .++.+++++++|.+.+....      ++....-+   +.+.|.+|.++.|+.-.+++
T Consensus       147 ~~~~t~~~~~~---~~i--~~~~~~~~v~vDa~~~~~~~------~vd~~~~d---v~~~ss~k~~~~~~~~~~~~  208 (360)
T d1bjna_         147 CPNETIDGIAI---DET--PDFGADVVVAADFSSTILSR------PIDVSRYG---VIYAGAQKNIGPAGLTIVIV  208 (360)
T ss_dssp             CSEETTTTEEC---CCC--CCCCTTCCEEEECTTTTTSS------CCCGGGCS---EEEEETTTTTSSTTCEEEEE
T ss_pred             cccccccCccc---cce--ecccccceeeeeeeccccce------eeeeccce---eEEEEcccccccCCCceeEe
Confidence            88999988773   333  24677899999998876321      22222111   78889999977665444433

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.66  E-value=1.3e-07  Score=85.00  Aligned_cols=209  Identities=13%  Similarity=0.034  Sum_probs=118.0

Q ss_pred             CCCCCeeeccCCCCCCCCCCCChHHHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCC
Q 022213           39 NDPRPVVPLGYGDPTAFPCFRTAVEAEDAIVDAVRSGK---FNCYATNSGIPPARRAIADYLSRDLPYKLSADDVYVTLG  115 (301)
Q Consensus        39 ~~~~~~i~l~~g~p~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g  115 (301)
                      .+++.+|||..|.-... --..++.+.+++.++++...   ...+.. .....+.+.+++.+....+  -..+.++++++
T Consensus        50 ~dG~~ylD~~~g~~~~~-lGh~~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~s  125 (461)
T d1ohwa_          50 VDGNRMLDLYSQISSIP-IGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMAC  125 (461)
T ss_dssp             TTSCEEEESSHHHHTCS-SCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESS
T ss_pred             CCCCEEEEcccCHHHHh-hcCCcHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecc
Confidence            35778888876521110 01234678888887665321   111111 1123466777777654322  24468999999


Q ss_pred             HHHHHHHHHHHhc----------------------------CCCCEEEEcCCCCcchHHHHHh-cCce-----------E
Q 022213          116 CKQAVEVILSVLA----------------------------RPGANVLLPRPGWPYYEGIAQR-KQVE-----------V  155 (301)
Q Consensus       116 ~~~al~~~~~~l~----------------------------~~gd~Vl~~~p~~~~~~~~~~~-~g~~-----------~  155 (301)
                      +++|++.+++...                            .+..+|+...-+|++....... .|.+           .
T Consensus       126 GseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~  205 (461)
T d1ohwa_         126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW  205 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCC
T ss_pred             hhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCC
Confidence            9999999988652                            1235788888888864322222 1211           0


Q ss_pred             EEeecCCCC-CC-----------CCCHHHHHhhcc-----cCccEEEEcCC-CCCcc-cCCCHHHHHHHHHHHHhCCCeE
Q 022213          156 RHFDLLPER-NW-----------EVDLDAVEALAD-----KNTAAMVIINP-GNPCG-NVFTYHHLQEIAEMARKLRVMV  216 (301)
Q Consensus       156 ~~~~~~~~~-~~-----------~~~~~~l~~~~~-----~~~~~v~l~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~i  216 (301)
                      ...+..... ..           ..+.+.+++.+.     ....+.++.-| +...| ...+.+.+++|.++|++||+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gill  285 (461)
T d1ohwa_         206 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF  285 (461)
T ss_dssp             CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcce
Confidence            011110000 00           012344444432     23344555555 44445 4578899999999999999999


Q ss_pred             EEccCCcccccCCCCCCCccccCC--CCCEEEEecCcccCC
Q 022213          217 VADEVYGHLTFGSIPYTPMGLFGS--IVPVITLGSISKRWL  255 (301)
Q Consensus       217 i~D~~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~  255 (301)
                      |.||++..+...+. ......++-  ..+++   +++|.++
T Consensus       286 I~DEV~tG~gRtG~-~~~~e~~gi~~~PDiv---~~gK~l~  322 (461)
T d1ohwa_         286 LVDEVQTGGGSTGK-FWAHEHWGLDDPADVM---TFSKKMM  322 (461)
T ss_dssp             EEECTTTCSSTTSS-SSGGGGGCCSSCCSEE---EECGGGS
T ss_pred             eccccccccccccc-cccccccccccCchhh---hhhhccc
Confidence            99999998876653 333443332  23455   6789854

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=0.00036  Score=61.23  Aligned_cols=165  Identities=22%  Similarity=0.279  Sum_probs=101.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHH----HHhcCceEEE
Q 022213           83 NSGIPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA-RPGANVLLPRPGWPYYEGI----AQRKQVEVRH  157 (301)
Q Consensus        83 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~  157 (301)
                      .+|..++.-.+..++.+--  +.+.-+.-.-.|++.....++.+.. ...+++++..-.++.+...    ++..|++++.
T Consensus       103 sQG~Lq~l~e~q~~l~elt--Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~  180 (437)
T d1wyua1         103 SQGVLQATFEYQTMIAELA--GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhh--CCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEe
Confidence            4454444444444444322  2344455666788877777766554 3567899998888766443    4567999999


Q ss_pred             eecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc
Q 022213          158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL  237 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~  237 (301)
                      ++.+...   .+.++    +++++.++++.+||. .|..-+   +++|++++++.|.+++.|..-..+.  .  ..+...
T Consensus       181 v~~~~~~---~~~~~----~~~~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~ad~~al~--~--l~~Pg~  245 (437)
T d1wyua1         181 LPLEGGR---TPLPE----VGEEVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVADPLSLG--V--LKPPGA  245 (437)
T ss_dssp             ECCBTTB---CCCCC----CCTTEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEECCTTGGG--T--BCCHHH
T ss_pred             eeccccc---chhhh----hccceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeeechhhhh--c--cccccc
Confidence            8874322   22222    456788899999965 688755   8889999999999887765432221  1  112222


Q ss_pred             cCCCCCEEEEecCcccCCCC----cceeEEEEeeC
Q 022213          238 FGSIVPVITLGSISKRWLVP----GWRFGWLVTND  268 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~~----G~rvG~~~~~~  268 (301)
                      ++-+   |++++ +|.|+.|    |-..|++.+..
T Consensus       246 ~GaD---i~~g~-~q~fg~p~g~GGP~~G~~a~~~  276 (437)
T d1wyua1         246 YGAD---IAVGD-GQSLGLPMGFGGPHFGFLATKK  276 (437)
T ss_dssp             HTCS---EEEEE-CTTTTCCCGGGCSCCEEEEECG
T ss_pred             cccc---eEeec-cceeccccCCCcCccccccccc
Confidence            3322   55666 6665553    55578887753

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=0.0036  Score=55.22  Aligned_cols=165  Identities=19%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHhhhCCCCCCCCCEEEcCCHHHHHHHHHHHhc---CCC----CEEEEcCCCCc-chHHHHHhcCceEEE
Q 022213           86 IPPARRAIADYLSRDLPYKLSADDVYVTLGCKQAVEVILSVLA---RPG----ANVLLPRPGWP-YYEGIAQRKQVEVRH  157 (301)
Q Consensus        86 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~g----d~Vl~~~p~~~-~~~~~~~~~g~~~~~  157 (301)
                      +-++...|+++.      +++--|.-.-.|+|.+.+.++.+..   +.|    ..+++..+.+. .........+...+.
T Consensus       108 lfEfQtmi~eLT------GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (471)
T d1wyub1         108 MWELGEYLKALT------GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVRE  181 (471)
T ss_dssp             HHHHHHHHHHHH------TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHh------CCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeec
Confidence            345666677776      3444455556677766655555442   222    23445555554 444555566777777


Q ss_pred             eecCCCCCCCCCHHHHHhhcccCccEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEEEccCCcccccCCCCCCCccc
Q 022213          158 FDLLPERNWEVDLDAVEALADKNTAAMVIINPGNPCGNVFTYHHLQEIAEMARKLRVMVVADEVYGHLTFGSIPYTPMGL  237 (301)
Q Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~  237 (301)
                      ++...  ....+.+.+......++.++++.+|++..+..-.   .+++++++++.+..+++|.+.......-..+.   .
T Consensus       182 ~~~~~--~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~---~  253 (471)
T d1wyub1         182 IPSGP--EGEVDLEALKRELGPHVAALMLTNPNTLGLFERR---ILEISRLCKEAGVQLYYDGANLNAIMGWARPG---D  253 (471)
T ss_dssp             ECBCT--TSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHH---H
T ss_pred             ccccc--cccccchhhhhhhhccccceeeccCCCcccccch---hhhhHHHHHhccccccccccchhhhhhccccC---c
Confidence            76543  3457888888888777888899999887666544   67778888888888887766554332211111   1


Q ss_pred             cCCCCCEEEEecCcccCCC----CcceeEEEEee
Q 022213          238 FGSIVPVITLGSISKRWLV----PGWRFGWLVTN  267 (301)
Q Consensus       238 ~~~~~~vi~~~s~SK~~~~----~G~rvG~~~~~  267 (301)
                      ...   .+++.+..+.||.    .|-.+|++.+.
T Consensus       254 ~g~---div~vg~~q~~G~P~~~GGP~~G~~a~~  284 (471)
T d1wyub1         254 MGF---DVVHLNLHKTFTVPHGGGGPGSGPVGVK  284 (471)
T ss_dssp             HTC---SEEECCTTTTTCCCCTTSCCCCCCEEEC
T ss_pred             ccc---cccccccccccccccccccccccceeeh
Confidence            111   1444566665544    36668888874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.97  E-value=2.6  Score=32.53  Aligned_cols=95  Identities=13%  Similarity=0.037  Sum_probs=56.9

Q ss_pred             CCCCEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhccc------
Q 022213          106 SADDVYVTLGCKQAVEVILSVLARPGANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADK------  179 (301)
Q Consensus       106 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------  179 (301)
                      +...+++|.+++..=..+.+.|.+.|-+|++..-.-.......+..+.+...+++       -|.+.+++.+++      
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDV-------ADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCT-------TCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEec-------CCHHHHHHHHHHHHHhcC
Confidence            4445666666665557777788889989888765544555666666766655554       355555554432      


Q ss_pred             CccEEEEcCC-CCCcc--cCCCHHHHHHHHHH
Q 022213          180 NTAAMVIINP-GNPCG--NVFTYHHLQEIAEM  208 (301)
Q Consensus       180 ~~~~v~l~~p-~nptG--~~~~~~~l~~i~~~  208 (301)
                      +... +++|. ..+.+  .-.+.++|++..++
T Consensus        77 ~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~v  107 (242)
T d1ulsa_          77 RLDG-VVHYAGITRDNFHWKMPLEDWELVLRV  107 (242)
T ss_dssp             SCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             CceE-EEECCcccccCchhhCcchhhhccccc
Confidence            3444 44443 22222  24677888777764

>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Bacterial cell division inhibitor SulA
domain: Hypothetical protein PA3008
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.72  E-value=2.3  Score=29.15  Aligned_cols=103  Identities=9%  Similarity=0.021  Sum_probs=62.5

Q ss_pred             EEEcCCHHHHHHHHHHH---hcCCC--CEEEEcCCCCcchHHHHHhcCceEEEeecCCCCCCCCCHHHHHhhcccCccEE
Q 022213          110 VYVTLGCKQAVEVILSV---LARPG--ANVLLPRPGWPYYEGIAQRKQVEVRHFDLLPERNWEVDLDAVEALADKNTAAM  184 (301)
Q Consensus       110 i~~t~g~~~al~~~~~~---l~~~g--d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  184 (301)
                      +.....+.+.+.+++-.   +.+..  .-|+..+|-+..|...+...|+....+-+...+.-.-.+..+|++++......
T Consensus         7 l~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~~~a   86 (119)
T d1ofux_           7 LSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHT   86 (119)
T ss_dssp             EEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEE
T ss_pred             ecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCCccE
Confidence            44555555545444433   33333  34777788888899999999986444433222221123455677777777666


Q ss_pred             EEcCCCCCcccCCCHHHHHHHHHHHHhCCCeEE
Q 022213          185 VIINPGNPCGNVFTYHHLQEIAEMARKLRVMVV  217 (301)
Q Consensus       185 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~ii  217 (301)
                      ++.-+.+     ++..+++++--.|++.+...+
T Consensus        87 Vl~w~~~-----l~~~~~RRLqlAA~~g~t~~~  114 (119)
T d1ofux_          87 VVSWLEP-----LSRAARKQLSRAAQLGQAQSL  114 (119)
T ss_dssp             EEECCSS-----CCHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEcCCC-----CChHHHHHHHHHHHhcCCEEE
Confidence            6665532     567778888777777765443