Citrus Sinensis ID: 022220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MVGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHcEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvgrlifptvTTSVLWKIFLLSLIScssdfssyiglqyssptlNTAMLNLIPAFTFILAIIFRMEKLKWrskssqaksLGTIVSIAGAFVVtfykgppivrprldiasldqiqplqsnwilgGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMragplyvsmfkPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGkakeentiddrgtwsselssekvpllqnstedtkccpsv
Flexible Loop (DISEMBL)
MVGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEentiddrgtwsselssekvpllqnstedtkccpsv
Low Complexity Region (SEG)
MVGRLIFPTVTTSVLWKifllsliscssdfssYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Disordered region (IsUnstruct)
***RLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK************************************
Disordered Region (DISOPRED)
MVGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV*****************NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW****************************************
Disordered Region (DISEMBL)
MVGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL**********SLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTID******************************
Disordered Region (DISPRO)
****LIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPR*************SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.956	0.782	0.414	1e-61
Q9FL08	368	WAT1-related protein At5g	no	no	0.94	0.766	0.401	5e-56
F4KHA8	370	WAT1-related protein At5g	no	no	0.936	0.759	0.397	9e-55
Q945L4	339	WAT1-related protein At5g	no	no	0.886	0.784	0.402	1e-49
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.91	0.758	0.395	3e-48
F4IYZ0	358	WAT1-related protein At3g	no	no	0.916	0.768	0.383	6e-48
F4JK59	347	WAT1-related protein At4g	no	no	0.843	0.729	0.427	2e-47
Q56X95	355	WAT1-related protein At3g	no	no	0.893	0.754	0.390	1e-46
Q9LRS5	353	WAT1-related protein At3g	no	no	0.916	0.779	0.394	1e-45
Q9LV20	383	WAT1-related protein At3g	no	no	0.96	0.751	0.341	2e-43

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 179/299 (59%), Gaps = 12/299 (4%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +  S+L+KI LL +I C S+   Y G+ YSSPTL +A+ NL PAFTF+LA++FRME +
Sbjct: 69  PPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESV 128

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
            ++  SS AK LGT+VSI GAF+VT Y GP ++       SL   Q    NWILG  +LA
Sbjct: 129 SFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRS-QSTNPNWILGAGFLA 187

Query: 128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLRLDVG 186
            +   +  WYI+Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++ ++ 
Sbjct: 188 VEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIA 247

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
           L +I  S + G+    T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++GSL+
Sbjct: 248 LVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLI 307

Query: 247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSE----------KVPLLQNSTEDTK 295
           GA +I IGFY VMWGKAKE   ++D    + E ++E          K PLL++   D  
Sbjct: 308 GATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKNDEH 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 178/299 (59%), Gaps = 17/299 (5%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P   + + +KIFLL L+   S  +   G+ YSSPTL +A+ NL PAFTF LA+IFRME++
Sbjct: 77  PAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQV 136

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI--------VRPRLDIASLDQIQPLQSNW 119
           + RS ++QAK +G I+SI+GA VV  YKGP +        V P + +    Q+  ++S+W
Sbjct: 137 RLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLH--QQLTSIESSW 194

Query: 120 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAW 179
           I+GG  LA+Q  LIS WYILQ   ++ +P  I ++ +   F+T+++    L   + L++W
Sbjct: 195 IIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSW 254

Query: 180 KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDG 239
            L+ D+ L AI YS V  + F      W L   GP+Y+S+F+PL+I  +  MG I  GD 
Sbjct: 255 VLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDA 314

Query: 240 LFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTKCCP 298
           L LGS++G++I+ IGFY V+WGKA+E+      G       SE+ PLL     +    P
Sbjct: 315 LHLGSVIGSMILCIGFYTVIWGKAREDTIKTVAG-------SEQSPLLLTHIIEDGAFP 366

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  213 bits (543), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 117/294 (39%), Positives = 183/294 (62%), Gaps = 13/294 (4%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P+  T V + IFLL+L+   S      G++YSSPTL +A+ NL PAFTF LA+IFRME++
Sbjct: 78  PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQI 137

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVR------PRLDIASLDQIQPLQSNWIL 121
             RS ++QAK +GTIVSI+GA VV  YKGP ++       P   I+    +    S+WI+
Sbjct: 138 VLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWII 197

Query: 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKL 181
           GG  LA Q +L+S WYILQ   ++ +P  I ++      +T+++A   L    +L+++ L
Sbjct: 198 GGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFIL 257

Query: 182 RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF 241
           +  V L ++ YS  + ++F + +  W L   GP+Y+S+FKPL+I+ +  MGV+  GD L+
Sbjct: 258 KPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDALY 317

Query: 242 LGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTK 295
           LGS++G++I+ +GFY V+WGKA+E++     GT       E+ PLL + T + +
Sbjct: 318 LGSVIGSLILSLGFYTVIWGKAREDSIKTVAGT-------EQSPLLPSHTIEEE 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 167/283 (59%), Gaps = 17/283 (6%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S+L  + +L LI+ +     Y G++YSSPTL++AM N+ PAFTFILA++FRME +
Sbjct: 70  PPLTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENI 129

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
               KSS AK LGTI+SI GA VVT Y GP              +    S+WI+GG  LA
Sbjct: 130 SLGKKSSVAKVLGTILSIIGALVVTLYHGP-------------MLMSSHSDWIIGGGLLA 176

Query: 128 AQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
            Q IL+S  Y++ A T+  +P A++V L +    + + A +  L       AW +R D+ 
Sbjct: 177 LQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDIT 236

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
           L  +  + ++ + +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+LGS++
Sbjct: 237 LITVVATGILNSGYY-VIHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVM 295

Query: 247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 289
           G ++I IGFY+V+WGKAKE+  +D  G   S   S   PLL N
Sbjct: 296 GGILISIGFYMVLWGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 164/286 (57%), Gaps = 13/286 (4%)

Query: 14  VLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKS 73
           +L KI LL  +      + YIG++YSSPTL +A+ N+ PA TFILAIIFRMEK+ ++ +S
Sbjct: 80  ILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERS 139

Query: 74  SQAKSLGTIVSIAGAFVVTFYKGPPI-VRPRLDIASLDQIQP----LQSNWILGGFYLAA 128
           S AK +GTI+S+ GA VV FY GP + +       +  Q  P      S+W++GG  L  
Sbjct: 140 SLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIGGALLTM 199

Query: 129 QAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGL 187
           Q I +S  +ILQA  +  +PA   V   Y    S + + +  +      S W +  D+ L
Sbjct: 200 QGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWIIHFDITL 259

Query: 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247
             I   A++ + +   +  W +   GPLY+++FKPL+IL + VMG I   D L+LG L+G
Sbjct: 260 ITIVTMAIVTSVYY-VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG 318

Query: 248 AVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
            ++I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct: 319 GILITLGFYAVMWGKANEE---KDQLSFSEK---EKTPLLLNRKND 358

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 173/297 (58%), Gaps = 22/297 (7%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P ++ S+L KI LL  +      +  IG++YS+PTL +A+ N++PA TFILA+IFRMEK+
Sbjct: 71  PPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKV 130

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIAS-LDQIQPLQSNWILG 122
            ++ +SS AK +GTI+S+ GAFVV FY GP +      P L+       +   +S+W++G
Sbjct: 131 SFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIG 190

Query: 123 GFYLAAQAILISAWYILQAITLKEFP-----ALIVMLCYQYFFSTILAAMFSLTV-VTEL 176
           G  L  Q I +S  +ILQ   ++E+P     +++ +LC      +I+ +M  L V     
Sbjct: 191 GAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCI-----SIVTSMIGLVVEKNNP 245

Query: 177 SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIF 236
           S W +  D+ LF I  + +I + +   +  W +    PLY+++FKPL+IL + VMG I  
Sbjct: 246 SIWIIHFDITLFTIVTTGIITSVYY-VIHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFL 304

Query: 237 GDGLFLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
            D L+LG L+G ++I +GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct: 305 NDSLYLGCLIGGILITLGFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/262 (42%), Positives = 172/262 (65%), Gaps = 9/262 (3%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           PT  +S+ +KIFLL+L+  +S  +   G++YSSPTL++A+ NL PAFTFILAI FRME++
Sbjct: 74  PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
             RS ++QAK +GTIVSI+GA V+  YKGP     +L +A+       +S+WI+GG  L 
Sbjct: 134 MLRSSATQAKIIGTIVSISGALVIVLYKGP-----KLLVAA--SFTSFESSWIIGGLLLG 186

Query: 128 AQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
            Q +L+S W+ILQ   ++ +P  I V+ CY    +T+++    L V  +L++W+L+    
Sbjct: 187 LQFLLLSVWFILQTHIMEIYPEEIAVVFCYN-LCATLISGTVCLLVEKDLNSWQLKPGFS 245

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
           L ++ YS +   +  + +  W L   GP+Y+S+FKPL+I  +  M  I  GD L LGS++
Sbjct: 246 LASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVI 305

Query: 247 GAVIIVIGFYVVMWGKAKEENT 268
           G+VI+  GFY V+WGKA+E++T
Sbjct: 306 GSVILSFGFYTVIWGKAREDST 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 164/284 (57%), Gaps = 16/284 (5%)

Query: 17  KIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQA 76
           KI +L L+  +   + +IG++YS+PTL +A+ N+ PA TFILAIIFRMEK  ++ KSS A
Sbjct: 79  KIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSSVA 138

Query: 77  KSLGTIVSIAGAFVVTFYKGPPIVRPRL-DIASLDQ----IQPLQSNWILGGFYLAAQAI 131
           K +GTIVS+ GA VV  Y GP +  P       L Q    +    S+WI+GG  LA +  
Sbjct: 139 KMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIKDT 198

Query: 132 LISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELSAWKLRLDVGLFAI 190
           L+   +ILQA  +K +PA   +  + +  ++IL ++  +       S W +  D+ L  I
Sbjct: 199 LVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITLVCI 258

Query: 191 AYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI 250
               +    +   + LW +   GP+Y+++F+PL+IL + +MG I  GD  +LGSLVG ++
Sbjct: 259 VVGGIFNPGYY-AIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGGIL 317

Query: 251 IVIGFYVVMWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 293
           I +GFY VMWGKAKE  T          LS SE+ PLL  + +D
Sbjct: 318 ISLGFYTVMWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 168/289 (58%), Gaps = 14/289 (4%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P ++ S+L KI LL L+      + YIG++YSSPTL +A+ N+ PA TFILAIIFRMEK+
Sbjct: 71  PPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKV 130

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIAS-LDQIQPLQSNWILG 122
            ++ +SS AK +GTI+S+ GA VV  Y GP +      P ++       +    S+W++G
Sbjct: 131 SFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIG 190

Query: 123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFS-TILAAMFSLTV-VTELSAWK 180
           G  L  + I +S  +ILQA  +  +PA   +  + Y  S +I+ +M  L V     S W 
Sbjct: 191 GALLTIRDIFVSVSFILQAKIMSTYPAAFTV-SFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query: 181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
           +R D+ L  I   A+I + +   +  W +   GPLY+++FKPL+IL + VM  +   D L
Sbjct: 250 IRFDITLITIVTMAIITSVYY-VIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSL 308

Query: 241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 289
           +LG L+G ++I +GFY VMWGKA EE    D+    S    E+ PLL N
Sbjct: 309 YLGCLIGGLLITLGFYAVMWGKANEEK---DQLLLVS--GKERTPLLLN 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 164/290 (56%), Gaps = 2/290 (0%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYI-GLQYSSPTLNTAMLNLIPAFTFILAIIFRMEK 66
           P +T S+L + F L+LI  +++   Y+ GL Y++PT  +AM N +PA TFI+A   R+E 
Sbjct: 91  PPLTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEH 150

Query: 67  LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWI-LGGFY 125
           +    K   AK LGT+VSI GA V+T Y+G PI    L++   + +    S+ + LG  Y
Sbjct: 151 IDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLY 210

Query: 126 LAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDV 185
           L    +  + W +LQA  LK++PA + +  +  FF  I   + +L V T+L+ W +    
Sbjct: 211 LMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWE 270

Query: 186 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL 245
            LF I Y+ +I +  +  L  WC+ ++GP++V++F+PL  L    M  +I GD L+ G +
Sbjct: 271 ELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGI 330

Query: 246 VGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTEDTK 295
           VGAV I++G Y+V+WGK +E     +      E  ++ +   Q+   +++
Sbjct: 331 VGAVFIMLGLYLVLWGKNEERKLALEESQQDPESLTKHLLEAQHKKSNSE 380

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.936	0.789	0.581	2e-84
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.926	0.803	0.550	2e-79
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.943	0.806	0.524	1e-75
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.943	0.815	0.489	6e-72
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.943	0.806	0.503	2e-71
388502250	352	unknown [Medicago truncatula]	0.95	0.809	0.515	2e-70
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.953	0.478	0.510	8e-70
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.946	0.813	0.466	4e-68
296086518	356	unnamed protein product [Vitis vinifera]	0.946	0.797	0.510	1e-67
224057230	355	predicted protein [Populus trichocarpa]	0.953	0.805	0.454	2e-67

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/282 (58%), Positives = 209/282 (74%), Gaps = 1/282 (0%)

Query: 13  SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSK 72
           S+L K FLLS+    +    Y+GLQYSSPTL TAMLNLIPAFTFILAIIFR+EKL  RSK
Sbjct: 74  SLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILAIIFRLEKLDRRSK 133

Query: 73  SSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQI-QPLQSNWILGGFYLAAQAI 131
           SS AKSLGTIVSIAGAFVVTFY+GP +      I    Q+    Q  W++G  +LAA+A+
Sbjct: 134 SSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFFWMIGALFLAAEAL 193

Query: 132 LISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIA 191
           + SAWYILQ   LK+FPA+++++CY  FF+T+L+A+F+L VV + ++WK++ ++GL  I 
Sbjct: 194 MDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNSWKIKPNIGLATIL 253

Query: 192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII 251
           Y+AVIG AF  +L+ WCL R GPLYV++FKPLAI+F+ +M  II GD L LGSL+GA+II
Sbjct: 254 YTAVIGLAFRISLVAWCLSRTGPLYVTLFKPLAIIFAVIMDAIILGDPLCLGSLIGAIII 313

Query: 252 VIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
           V GFY VMWGKAKEE   DD    S E SS+ VPLL +  E+
Sbjct: 314 VTGFYWVMWGKAKEEKAGDDSAVGSCESSSDNVPLLGDLAEE 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 201/285 (70%), Gaps = 7/285 (2%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S+L + FLL+LI C +    Y G+QYSSPTL +AMLNL+PAFTFILA+I RMEKL
Sbjct: 66  PPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILAVICRMEKL 125

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
           + +  SS AKS+G +VS+AGAFVVTFYKGPPI+       S +QI   QS+W+LGGF LA
Sbjct: 126 ELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQIFSSQSHWVLGGFLLA 185

Query: 128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGL 187
            +++L S WYILQA  LK+ PA++ +  +  FF +I++   SL    + SAW+L+LDVGL
Sbjct: 186 DESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKLDVGL 245

Query: 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247
            A+ YSA++G     ++  WC+ RAGPL+ SMFKPL I+F+ VMGVI  GD L LGSLVG
Sbjct: 246 LAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGIVFAFVMGVIFSGDALHLGSLVG 305

Query: 248 AVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 292
           A+IIV GFY VMWGKAKE     + G       S KVPLLQN T+
Sbjct: 306 AIIIVTGFYAVMWGKAKEA----EEGRLE---CSRKVPLLQNQTD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/284 (52%), Positives = 191/284 (67%), Gaps = 1/284 (0%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S L   FLL+    S    +Y+G+  SSPTL +AMLNLIPAFTFILA+IFRME++
Sbjct: 69  PPLTFSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEV 128

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
            W+  SSQAK LGTIVSIAGAFVV  YKGPPI +  L  +S   +   Q NWILGG + A
Sbjct: 129 HWKHSSSQAKFLGTIVSIAGAFVVILYKGPPIFKTHLSNSSNKFLFSQQLNWILGGMFCA 188

Query: 128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGL 187
             +I+ S WYI QA    ++PA+  ++ +Q  FSTI   +F+L VV   + W+L+LD+GL
Sbjct: 189 GDSIVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGL 248

Query: 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247
             I Y A+        L  WC+++AGPL+ SMFKP+AI+FS  MG I  GD L LGSL+G
Sbjct: 249 IGIVYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVAIIFSVFMGAIFLGDDLSLGSLIG 308

Query: 248 AVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 291
           AVIIVIGFY V+WGK+ E+N I ++G  + E S   VPLLQN T
Sbjct: 309 AVIIVIGFYAVLWGKSIEDNKI-EKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 188/288 (65%), Gaps = 5/288 (1%)

Query: 4   RLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFR 63
           R   P +T   L   FLL+L + S+   +Y+G++ SSPTL +A+LN+IPAFTF+LA+IFR
Sbjct: 65  RSELPLLTVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFR 124

Query: 64  MEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGG 123
           ME++ WR  SSQAK LGTIVSI GAFVV  YKGPPI R      S       Q NWILGG
Sbjct: 125 MEEVHWRYFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHSSYTSNKLQFSAQPNWILGG 184

Query: 124 FYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRL 183
            +L A + L S WYI QA   K++PA+ V++ +Q+ FSTI   +F+L  V + + W+L+ 
Sbjct: 185 IFLVADSFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKF 244

Query: 184 DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG 243
           D GL  I Y A++      TL  WC+ RAGPL+ +MFKP+ I+F+  M  I  G+   LG
Sbjct: 245 DRGLSVILYQAIVATMLRYTLTTWCVHRAGPLFCAMFKPVGIIFTVSMSAIFLGENFGLG 304

Query: 244 SLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 291
           SL+GAVIIVIGFY V+WG ++EEN I++      E SS   PLLQ+ +
Sbjct: 305 SLIGAVIIVIGFYAVLWGNSREENKIENL-----ESSSHNAPLLQDRS 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/284 (50%), Positives = 186/284 (65%), Gaps = 1/284 (0%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S L   FLL++   S    +Y+G+  SS TL +AMLNLIPAFTFILA+IFRME++
Sbjct: 69  PPLTFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEV 128

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
            WR  SSQAK LGT++SI GAFVV  YKGPPI +     +S       Q NWILGG +  
Sbjct: 129 HWRHSSSQAKVLGTLISIGGAFVVILYKGPPIFKTHWSNSSNKLQFSQQINWILGGIFCV 188

Query: 128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGL 187
             +I+ S WYI QA    +FPA+ V++ +Q  FSTI  A+F+L  V + + W+L+ D+GL
Sbjct: 189 GDSIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGL 248

Query: 188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG 247
             I Y A+        L  WC+++AGPL+ SMFKP++I+F+  M  I  GD L LGSL+G
Sbjct: 249 IGILYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVSIIFTVFMAAIFLGDDLSLGSLIG 308

Query: 248 AVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNST 291
           AVIIVIGFY V+WGK+ EEN I  +G  + E S   VPLLQN T
Sbjct: 309 AVIIVIGFYAVLWGKSIEENKI-VKGVENLESSCHNVPLLQNRT 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/289 (51%), Positives = 196/289 (67%), Gaps = 4/289 (1%)

Query: 2   VGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAII 61
           + R   P +T S LW  FLL+LI  S+   +Y G++ SSPTL +AMLNLIPAFTF+LA+I
Sbjct: 65  INRSQRPPLTFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALI 124

Query: 62  FRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIA-SLDQIQPLQSNWI 120
           FRME++ WR  SSQAK++GTIVS+AGAFVV  YKGPPI++    I+ +  Q  P   NWI
Sbjct: 125 FRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPILKIHSSISYNTLQFSP-NLNWI 183

Query: 121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK 180
           LGGF  A  ++L S WYI Q    K++PA+IV++ +Q  F TI   +++L VV + SAW+
Sbjct: 184 LGGFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWE 243

Query: 181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
           L+LD+GL  I Y AV        L  W + RAGPL+ +MFKP+ I+F+  +G I FGD  
Sbjct: 244 LKLDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGIIFTVFLGSIFFGDDF 303

Query: 241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 289
           +LGSL+GAVIIV+GFY V WGKA EE    ++G  + E  S  VPLLQN
Sbjct: 304 YLGSLIGAVIIVVGFYAVQWGKASEEKV--EKGIENLETQSNVVPLLQN 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  270 bits (689), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 195/290 (67%), Gaps = 4/290 (1%)

Query: 2   VGRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAII 61
           + R   P +T S LW  FLL+LI  S+   +Y G++ SSPTL +AMLNLIPAFTF+LA+I
Sbjct: 311 INRSQRPPLTFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALI 370

Query: 62  FRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIA-SLDQIQPLQSNWI 120
           FRME++ WR  SSQAK++GTIVS+AGAFVV  YKGPPI++    I+ +  Q  P   NWI
Sbjct: 371 FRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPILKIHSSISYNTLQFSP-NLNWI 429

Query: 121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK 180
           LGGF  A  ++L S WYI Q    K++PA+IV++ +Q  F TI   +++L VV + SAW+
Sbjct: 430 LGGFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWE 489

Query: 181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
           L+LD+GL  I Y AV        L  W + RAGPL+ +MFKP+ I+F+  +G I  GD  
Sbjct: 490 LKLDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGIIFTVFLGSIFLGDDF 549

Query: 241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNS 290
           +LGSL+GAVIIV+GFY V WGKA EE    ++G  + E  S  VPLLQN 
Sbjct: 550 YLGSLIGAVIIVVGFYAVQWGKASEEKV--EKGIENLETQSNVVPLLQNK 597

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 190/287 (66%), Gaps = 3/287 (1%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S++   FLL L  C + F  Y G+  SSPTL TAMLNL+P  TFILA+ FRMEKL
Sbjct: 64  PPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEKL 123

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV-RPRLDIASLDQIQPLQSNWILGGFYL 126
             R+ SS AKS+GTI+S+ GAF++T+YKGP ++  P L+ +     QP  SNWI+GG  L
Sbjct: 124 DGRTSSSLAKSMGTIISVGGAFILTYYKGPLVLLTPSLNSSHQLLTQP--SNWIIGGLLL 181

Query: 127 AAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
           AA  ++ SAW I+QA+ LK +PA ++++ +  FF TIL+A+  L V  + SAW L  ++ 
Sbjct: 182 AADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPNIR 241

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
           L ++ YS V G+A    +  WCL + GP++VSMFKPL I+ +  +GVI  GD L+LGS++
Sbjct: 242 LVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLYLGSII 301

Query: 247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
           G VI  +G+Y VMWG+A+E+          ++ S EKVPLLQ+   +
Sbjct: 302 GTVICGMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQDQDAE 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/286 (51%), Positives = 187/286 (65%), Gaps = 2/286 (0%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S+L   FLL+L+   +    Y G+QYSS TL TAMLNL+P FTFILAIIFRME+L
Sbjct: 64  PQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRMERL 123

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQI-QPLQSNWILGGFYL 126
            WR  SS AKS+GT+VSIAGAF+VTFYKG PI+         DQ+    QSNW+ GG  L
Sbjct: 124 DWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGGLLL 182

Query: 127 AAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
           AA  ++ SAW ILQA  LK++PA +++  Y  FF  I +A  SL +     AW L+    
Sbjct: 183 AADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTR 242

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
             A+ YS V G  F    + WC+ + GP++V+MFKP+ I+ +  MGVI  GD  ++GSL+
Sbjct: 243 FIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYMGSLI 302

Query: 247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTE 292
           GA +IVIGFY VMWGKAKEE   +D G  S E +S+K PLLQN  E
Sbjct: 303 GATVIVIGFYSVMWGKAKEEKIDEDIGMRSLESTSQKAPLLQNYIE 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/288 (45%), Positives = 190/288 (65%), Gaps = 2/288 (0%)

Query: 8   PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
           P +T S++   FLL L  C      Y G+  SSPTL TAMLNL+P  TFILAIIFRME +
Sbjct: 66  PPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRMENV 125

Query: 68  KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIA-SLDQIQPLQSNWILGGFYL 126
            W+S S+ AKS+GTIVSI GAF+VT YKGP +++    +  S  Q+   QSNW+LGG  +
Sbjct: 126 DWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVLGGLLM 185

Query: 127 AAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
           A      S+W I+QA+ LK++ A ++++ + +FFSTIL+++ S+ +  + SAW L  ++ 
Sbjct: 186 AVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNSNIR 245

Query: 187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
           L A+ +S ++G AF   +  WC+ + GP++V++F PL I+ +    VI FGD L LG ++
Sbjct: 246 LIAVLFSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGIVIAAAASVICFGDALDLGIVI 305

Query: 247 GAVIIVIGFYVVMWGKAKEE-NTIDDRGTWSSELSSEKVPLLQNSTED 293
           GA +I IGFY V+WGKA+EE   ++D+    S  SS+KVP LQN + D
Sbjct: 306 GAAVIAIGFYAVIWGKAQEEIKKVEDKENCGSASSSQKVPFLQNRSND 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.913	0.746	0.409	9.9e-55
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.816	0.662	0.418	4.6e-50
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.843	0.729	0.400	1.5e-49
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.93	0.779	0.389	1.1e-48
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.923	0.780	0.385	1.8e-48
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.93	0.775	0.383	3.7e-48
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.886	0.784	0.392	1.6e-47
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.916	0.779	0.384	1.1e-46
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.976	0.791	0.332	1.7e-41
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.86	0.673	0.357	3.6e-41

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 113/276 (40%), Positives = 165/276 (59%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P +  S+L+K               Y G+ YSSPTL +A+ NL PAFTF+LA++FRME +
Sbjct:    69 PPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESV 128

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
              ++  SS AK LGT+VSI GAF+VT Y GP ++       SL + Q    NWILG  +LA
Sbjct:   129 SFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSL-RSQSTNPNWILGAGFLA 187

Query:   128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL-TVVTELSAWKLRLDVG 186
              +   +  WYI+Q   ++E+PA   ++C+     +   A+ +L T   +L AWK++ ++ 
Sbjct:   188 VEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIA 247

Query:   187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
             L +I  S + G+    T+  W L   GPL+V+MFKPL+I  +  MGVI   D L++GSL+
Sbjct:   248 LVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLI 307

Query:   247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSE 282
             GA +I IGFY VMWGKAKE   ++D    + E ++E
Sbjct:   308 GATVITIGFYTVMWGKAKEVALVEDDNKANHEEANE 343

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 105/251 (41%), Positives = 163/251 (64%)

Query:    35 GLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY 94
             G++YSSPTL +A+ NL PAFTF LA+IFRME++  RS ++QAK +GTIVSI+GA VV  Y
Sbjct:   105 GIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSATQAKIIGTIVSISGALVVILY 164

Query:    95 KGPPIVR------PRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP 148
             KGP ++       P   I+    +    S+WI+GG  LA Q +L+S WYILQ   ++ +P
Sbjct:   165 KGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLATQYLLVSVWYILQTRVMELYP 224

Query:   149 ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWC 208
               I ++      +T+++A   L    +L+++ L+  V L ++ YS  + ++F + +  W 
Sbjct:   225 EEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPGVSLASVMYSGGLVSSFGSVIHTWG 284

Query:   209 LMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT 268
             L   GP+Y+S+FKPL+I+ +  MGV+  GD L+LGS++G++I+ +GFY V+WGKA+E++ 
Sbjct:   285 LHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFYTVIWGKAREDSI 344

Query:   269 IDDRGTWSSEL 279
                 GT  S L
Sbjct:   345 KTVAGTEQSPL 355

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 105/262 (40%), Positives = 162/262 (61%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             PT  +S+ +K                 G++YSSPTL++A+ NL PAFTFILAI FRME++
Sbjct:    74 PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
               RS ++QAK +GTIVSI+GA V+  YKGP ++     +A+       +S+WI+GG  L 
Sbjct:   134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLL-----VAA--SFTSFESSWIIGGLLLG 186

Query:   128 AQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
              Q +L+S W+ILQ   ++ +P  I V+ CY    +T+++    L V  +L++W+L+    
Sbjct:   187 LQFLLLSVWFILQTHIMEIYPEEIAVVFCYN-LCATLISGTVCLLVEKDLNSWQLKPGFS 245

Query:   187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
             L ++ YS +   +  + +  W L   GP+Y+S+FKPL+I  +  M  I  GD L LGS++
Sbjct:   246 LASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVI 305

Query:   247 GAVIIVIGFYVVMWGKAKEENT 268
             G+VI+  GFY V+WGKA+E++T
Sbjct:   306 GSVILSFGFYTVIWGKAREDST 327

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 114/293 (38%), Positives = 167/293 (56%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P ++ S+L K                IG++YS+PTL +A+ N++PA TFILA+IFRMEK+
Sbjct:    71 PPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKV 130

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQ-IQPLQSNWILG 122
              ++ +SS AK +GTI+S+ GAFVV FY GP +      P L+   L   +   +S+W++G
Sbjct:   131 SFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIG 190

Query:   123 GFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV-TELSAWK 180
             G  L  Q I +S  +ILQ   ++E+P A  V + Y    S I+ +M  L V     S W 
Sbjct:   191 GAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCIS-IVTSMIGLVVEKNNPSIWI 249

Query:   181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
             +  D+ LF I  + +I + +   +  W +    PLY+++FKPL+IL + VMG I   D L
Sbjct:   250 IHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSL 308

Query:   241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
             +LG L+G ++I +GFYVVMWGKA EE     +    S    EK PLL +   D
Sbjct:   309 YLGCLIGGILITLGFYVVMWGKANEE-----KNKLLSFSGKEKTPLLLSGKND 356

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 113/293 (38%), Positives = 166/293 (56%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P+++ S+L K               +IG++YS+PTL +A+ N+ PA TFILAIIFRMEK 
Sbjct:    70 PSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKA 129

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD-IASLDQIQ-PLQSN---WILG 122
              ++ KSS AK +GTIVS+ GA VV  Y GP +  P       L Q+  PL S+   WI+G
Sbjct:   130 SFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIG 189

Query:   123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVV-TELSAWKL 181
             G  LA +  L+   +ILQA  +K +PA   +  + +  ++IL ++  +       S W +
Sbjct:   190 GCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWII 249

Query:   182 RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF 241
               D+ L  I    +    +   + LW +   GP+Y+++F+PL+IL + +MG I  GD  +
Sbjct:   250 HFDITLVCIVVGGIFNPGYYA-IHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFY 308

Query:   242 LGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELS-SEKVPLLQNSTED 293
             LGSLVG ++I +GFY VMWGKAKE  T          LS SE+ PLL  + +D
Sbjct:   309 LGSLVGGILISLGFYTVMWGKAKEGKT--------QFLSLSEETPLLDENIDD 353

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 112/292 (38%), Positives = 163/292 (55%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P ++ S+L K               YIG++YSSPTL +A+ N+ PA TFILAIIFRMEK+
Sbjct:    74 PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKV 133

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPI-VRPRLDIASLDQIQP----LQSNWILG 122
              ++ +SS AK +GTI+S+ GA VV FY GP + +       +  Q  P      S+W++G
Sbjct:   134 SFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIG 193

Query:   123 GFYLAAQAILISAWYILQAITLKEFPALI-VMLCYQYFFSTILAAMFSLTVVTELSAWKL 181
             G  L  Q I +S  +ILQA  +  +PA   V   Y    S + + +  +      S W +
Sbjct:   194 GALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWII 253

Query:   182 RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF 241
               D+ L  I   A++ + +   +  W +   GPLY+++FKPL+IL + VMG I   D L+
Sbjct:   254 HFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLY 312

Query:   242 LGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
             LG L+G ++I +GFY VMWGKA EE    D+ ++S +   EK PLL N   D
Sbjct:   313 LGCLIGGILITLGFYAVMWGKANEEK---DQLSFSEK---EKTPLLLNRKND 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 111/283 (39%), Positives = 161/283 (56%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P +T S+L                 Y G++YSSPTL++AM N+ PAFTFILA++FRME +
Sbjct:    70 PPLTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENI 129

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLA 127
                 KSS AK LGTI+SI GA VVT Y GP ++                S+WI+GG  LA
Sbjct:   130 SLGKKSSVAKVLGTILSIIGALVVTLYHGPMLMSSH-------------SDWIIGGGLLA 176

Query:   128 AQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVG 186
              Q IL+S  Y++ A T+  +P A++V L +    + + A +  L       AW +R D+ 
Sbjct:   177 LQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDIT 236

Query:   187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLV 246
             L  +  + ++ + +   +  W +   GP+Y+SMFKPL+IL + V   I  G+ L+LGS++
Sbjct:   237 LITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVM 295

Query:   247 GAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 289
             G ++I IGFY+V+WGKAKE+  +D  G   S   S   PLL N
Sbjct:   296 GGILISIGFYMVLWGKAKEDK-VDIIGAIESS-PSHNAPLLDN 336

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 111/289 (38%), Positives = 163/289 (56%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKL 67
             P ++ S+L K               YIG++YSSPTL +A+ N+ PA TFILAIIFRMEK+
Sbjct:    71 PPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKV 130

Query:    68 KWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLDQ-IQPLQSNWILG 122
              ++ +SS AK +GTI+S+ GA VV  Y GP +      P ++   L   +    S+W++G
Sbjct:   131 SFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIG 190

Query:   123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFS-TILAAMFSLTVV-TELSAWK 180
             G  L  + I +S  +ILQA  +  +PA   +  + Y  S +I+ +M  L V     S W 
Sbjct:   191 GALLTIRDIFVSVSFILQAKIMSTYPAAFTV-SFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
             +R D+ L  I   A+I + +   +  W +   GPLY+++FKPL+IL + VM  +   D L
Sbjct:   250 IRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSL 308

Query:   241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQN 289
             +LG L+G ++I +GFY VMWGKA EE    D+    S    E+ PLL N
Sbjct:   309 YLGCLIGGLLITLGFYAVMWGKANEEK---DQLLLVS--GKERTPLLLN 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 103/310 (33%), Positives = 170/310 (54%)

Query:     1 MVGRLIFPTVTTSVLWKXXXXXXXX-XXXXXXXYIGLQYSSPTLNTAMLNLIPAFTFILA 59
             M  R I P +T ++ W+                YIGL+ +S +  +A  N +PA TFILA
Sbjct:    60 MFERKIRPKMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILA 119

Query:    60 IIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASL---DQIQPLQ 116
             +IFR+E + +R   S AK +GT++++ GA ++T YKGP I   +    S        P  
Sbjct:   120 LIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTG 179

Query:   117 SNWILGGFYLAAQAILISAWYILQAITLKEFPA---LIVMLCYQYFFSTILAAMFSLTVV 173
              +W+LG   +       +A++ILQ+ TLK +PA   L+ ++C      TIL A+ SL +V
Sbjct:   180 QHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICG---IGTILNAIASLIMV 236

Query:   174 TELSAWKLRLDVGLFAIAYSAVI--GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVM 231
              + SAWK+ +D G  A  YS V+  G A+    ++  + + GP++ + F P+ ++ +  +
Sbjct:   237 RDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIV--IKQRGPVFTTSFSPMCMIITAFL 294

Query:   232 GVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEE-NTIDDR-GTWSSELSSEKVPLLQN 289
             G ++  + + LGS++GAV IV+G Y V+WGK+K+E N +D++    S EL    V + Q 
Sbjct:   295 GALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQELPITNV-VKQT 353

Query:   290 STEDTKCCPS 299
             +  D    P+
Sbjct:   354 NGHDVSGAPT 363

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 93/260 (35%), Positives = 146/260 (56%)

Query:     8 PTVTTSVLWKXXXXXXXXXXXXXXXYI-GLQYSSPTLNTAMLNLIPAFTFILAIIFRMEK 66
             P +T S+L +               Y+ GL Y++PT  +AM N +PA TFI+A   R+E 
Sbjct:    91 PPLTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEH 150

Query:    67 LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWI-LGGFY 125
             +    K   AK LGT+VSI GA V+T Y+G PI    L++   + +    S+ + LG  Y
Sbjct:   151 IDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLY 210

Query:   126 LAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDV 185
             L    +  + W +LQA  LK++PA + +  +  FF  I   + +L V T+L+ W +    
Sbjct:   211 LMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWE 270

Query:   186 GLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL 245
              LF I Y+ +I +  +  L  WC+ ++GP++V++F+PL  L    M  +I GD L+ G +
Sbjct:   271 ELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGI 330

Query:   246 VGAVIIVIGFYVVMWGKAKE 265
             VGAV I++G Y+V+WGK +E
Sbjct:   331 VGAVFIMLGLYLVLWGKNEE 350

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	6e-57
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	6e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  186 bits (474), Expect = 6e-57
 Identities = 118/293 (40%), Positives = 168/293 (57%), Gaps = 12/293 (4%)

Query: 7   FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEK 66
            P ++ S+L KI LL  +      + YIG++YS+PTL +A+ N+ PA TFILAIIFRMEK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 67  LKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIV----RPRLDIASLD-QIQPLQSNWIL 121
           + ++ +SS AK +GTI+S+ GA VV FY GP +      P L+   L   +    S+W++
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLI 189

Query: 122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV-VTELSAWK 180
           GG  L  Q I +S  +ILQA  + E+PA   +        +I+ +M  L V     S W 
Sbjct: 190 GGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249

Query: 181 LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL 240
           +  D+ L  I   A+I + +   +  W +   GPLY+++FKPL+IL + VMG I   D L
Sbjct: 250 IHFDITLITIVTMAIITSVYY-VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL 308

Query: 241 FLGSLVGAVIIVIGFYVVMWGKAKEENTIDDRGTWSSELSSEKVPLLQNSTED 293
           +LG L+G ++I +GFY VMWGKA EE    D+    S    EK PLL N   D
Sbjct: 309 YLGCLIGGILITLGFYAVMWGKANEEK---DQLLSFSG--KEKTPLLLNGKND 356

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 30/252 (11%)

Query: 15  LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILA-IIFRMEKLKWRSKS 73
           L  + L  L         ++ L+Y+S ++ + ++ L+P FT +LA ++   E+L      
Sbjct: 70  LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL 129

Query: 74  SQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILI 133
               +L  ++ I                                   L G  LA  A L+
Sbjct: 130 GILLALAGVLLILLG------------------------GGGGGILSLLGLLLALAAALL 165

Query: 134 SAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS 193
            A Y      L     + + L  Q   + +L  +F L+        +         + Y 
Sbjct: 166 WALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSR-----AWLLLLYL 220

Query: 194 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVI 253
            V        L  + L   G   V++   L  +F+ ++GV++ G+ L    L+GA ++V+
Sbjct: 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVL 280

Query: 254 GFYVVMWGKAKE 265
           G  +      + 
Sbjct: 281 GVLLASLRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.96
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.95
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.95
PRK11689	295	aromatic amino acid exporter; Provisional	99.95
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.94
PRK15430	296	putative chloramphenical resistance permease RarD;	99.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.93
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.88
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.86
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.85
KOG2765	416	consensus Predicted membrane protein [Function unk	99.85
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.84
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.83
COG2962	293	RarD Predicted permeases [General function predict	99.78
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.77
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.72
KOG1580	337	consensus UDP-galactose transporter related protei	99.71
KOG2766	336	consensus Predicted membrane protein [Function unk	99.7
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.68
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.63
COG2510	140	Predicted membrane protein [Function unknown]	99.6
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.57
KOG1581	327	consensus UDP-galactose transporter related protei	99.55
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.52
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.5
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.44
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.37
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.27
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.26
PRK15430	296	putative chloramphenical resistance permease RarD;	99.18
KOG1582	367	consensus UDP-galactose transporter related protei	99.17
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.17
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.16
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.14
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.14
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.11
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.03
PLN00411	358	nodulin MtN21 family protein; Provisional	98.94
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.93
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.93
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.92
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.86
COG2510	140	Predicted membrane protein [Function unknown]	98.86
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.84
PRK11272	292	putative DMT superfamily transporter inner membran	98.82
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.76
PRK11689	295	aromatic amino acid exporter; Provisional	98.68
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.65
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.64
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.63
COG2962	293	RarD Predicted permeases [General function predict	98.63
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.61
PRK13499	345	rhamnose-proton symporter; Provisional	98.6
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.48
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.36
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.23
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.12
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.12
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.09
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.01
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.9
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.88
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.87
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.79
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.79
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.66
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.61
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.6
COG2076	106	EmrE Membrane transporters of cations and cationic	97.58
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.52
PRK11431	105	multidrug efflux system protein; Provisional	97.51
COG2076	106	EmrE Membrane transporters of cations and cationic	97.46
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.43
PRK11431	105	multidrug efflux system protein; Provisional	97.43
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.42
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.41
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.38
PRK13499	345	rhamnose-proton symporter; Provisional	97.33
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.33
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.24
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.0
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.79
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.78
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.59
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.42
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.31
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.26
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.77
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.18
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.89
KOG2765	416	consensus Predicted membrane protein [Function unk	94.43
KOG1580	337	consensus UDP-galactose transporter related protei	94.26
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.1
KOG1581	327	consensus UDP-galactose transporter related protei	92.7
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.24
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	92.12
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.64
PRK02237	109	hypothetical protein; Provisional	90.78
KOG3912	372	consensus Predicted integral membrane protein [Gen	89.2
KOG1443	349	consensus Predicted integral membrane protein [Fun	88.89
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	87.82
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	87.45
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	87.39
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	87.36
PRK06638	198	NADH:ubiquinone oxidoreductase subunit J; Provisio	85.76
KOG4831	125	consensus Unnamed protein [Function unknown]	83.23

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=7.4e-33  Score=250.34  Aligned_cols=254  Identities=40%  Similarity=0.729  Sum_probs=198.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHH------hhhccccccccccchhhhh
Q 022220            8 PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIF------RMEKLKWRSKSSQAKSLGT   81 (300)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~------~~e~~~~~~~~~~~~~~~~   81 (300)
                      ++.+++++..+.+.|++++.++.+++.|++|+++++++++.++.|+++.++++++      +|||++++      +++|+
T Consensus        71 ~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~  144 (358)
T PLN00411         71 PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGT  144 (358)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHH
Confidence            4445778889999999997777899999999999999999999999999999999      58999888      99999


Q ss_pred             HhhhhhhhhhhhccCCCccCC---CCCcc-ccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHH
Q 022220           82 IVSIAGAFVVTFYKGPPIVRP---RLDIA-SLD-QIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCY  156 (300)
Q Consensus        82 ~l~~~Gv~ll~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~  156 (300)
                      +++++|+.++...+++.....   +..+. ... .......++..|+++++.++++|++|.+++|+..+++++....+++
T Consensus       145 ~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~  224 (358)
T PLN00411        145 ILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFL  224 (358)
T ss_pred             HHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHH
Confidence            999999998854443221100   00000 000 0011223457799999999999999999999999998756677777


Q ss_pred             HHHHHHHHHHHHHHHhhc-ccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220          157 QYFFSTILAAMFSLTVVT-ELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  235 (300)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~  235 (300)
                      +..++.+...+.....+. +...|........+.++|.+++ +.++|.+|++++++.+|+++++..+++|++++++++++
T Consensus       225 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~  303 (358)
T PLN00411        225 YTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF  303 (358)
T ss_pred             HHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHH
Confidence            777777766666655443 2333432233345668888875 56899999999999999999999999999999999999


Q ss_pred             hcCCcchhhhhhhHHHHHHHHHHhhcccccccc
Q 022220          236 FGDGLFLGSLVGAVIIVIGFYVVMWGKAKEENT  268 (300)
Q Consensus       236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~~~  268 (300)
                      +||++++.+++|+++|+.|+++..+.++++.|+
T Consensus       304 LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~  336 (358)
T PLN00411        304 LNDSLYLGCLIGGILITLGFYAVMWGKANEEKD  336 (358)
T ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            999999999999999999999998866555433

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.96  E-value=5e-28  Score=215.91  Aligned_cols=232  Identities=13%  Similarity=0.137  Sum_probs=187.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220            6 IFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI   85 (300)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~   85 (300)
                      ++++.++++++.++..|++++.+..+.+.|++|++++.++++.++.|+++++++++++|||++++      +++++++++
T Consensus        56 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~  129 (302)
T TIGR00817        56 KRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIV  129 (302)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999      999999999


Q ss_pred             hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHH
Q 022220           86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK--EFPALIVMLCYQYFFSTI  163 (300)
Q Consensus        86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~  163 (300)
                      +|+.+..  .+                  +.+....|++++++++++|++|.+..|+..+  +. |+...+.+++..+.+
T Consensus       130 ~Gv~l~~--~~------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~  188 (302)
T TIGR00817       130 GGVALAS--DT------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF  188 (302)
T ss_pred             HHHhhhc--CC------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence            9997652  11                  1123356999999999999999999999888  55 488999999999999


Q ss_pred             HHHHHHHHhhcccc---ccee-----cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220          164 LAAMFSLTVVTELS---AWKL-----RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  235 (300)
Q Consensus       164 ~~~~~~~~~~~~~~---~~~~-----~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~  235 (300)
                      .+.|.....++...   .+..     .....+...++.++.+....+.+++.++++.+|++.++...++|++++++++++
T Consensus       189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~  268 (302)
T TIGR00817       189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF  268 (302)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence            99988775543211   0100     000111112233332333333456689999999999999999999999999999


Q ss_pred             hcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220          236 FGDGLFLGSLVGAVIIVIGFYVVMWGKAK  264 (300)
Q Consensus       236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~~  264 (300)
                      +||++++.+++|.++++.|++++.+.|++
T Consensus       269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999875543

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.96  E-value=4.3e-27  Score=209.50  Aligned_cols=224  Identities=16%  Similarity=0.153  Sum_probs=177.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHhccc-cchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220           17 KIFLLSLIS-CSSDFSSYIGLQY-SSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY   94 (300)
Q Consensus        17 ~~~~~g~~~-~~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~   94 (300)
                      .+...|++. .....+++.++++ .+++.++++.++.|+++.+++++++|||++++      ++++++++++|+.++.. 
T Consensus        60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-  132 (299)
T PRK11453         60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-  132 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-
Confidence            345556655 5666688889988 58899999999999999999999999999999      99999999999988831 


Q ss_pred             cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHHHHHHHHh
Q 022220           95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLTV  172 (300)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  172 (300)
                      .+ ..               ..+....|+.+++.++++|+.|.+..|+..++.+  +......+....+.+.........
T Consensus       133 ~~-~~---------------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (299)
T PRK11453        133 DS-LN---------------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL  196 (299)
T ss_pred             cc-CC---------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            11 00               1122346999999999999999999999876653  233444555555544333333333


Q ss_pred             hccc---ccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220          173 VTEL---SAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV  249 (300)
Q Consensus       173 ~~~~---~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~  249 (300)
                      +++.   ..+...+...+..++|++++++.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~  276 (299)
T PRK11453        197 DGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV  276 (299)
T ss_pred             cCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            3221   1122235568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 022220          250 IIVIGFYVVMWGKA  263 (300)
Q Consensus       250 li~~g~~l~~~~~~  263 (300)
                      ++++|+++..+.++
T Consensus       277 lI~~gv~l~~~~~~  290 (299)
T PRK11453        277 LIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHhcchh
Confidence            99999998877554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.95  E-value=9.9e-27  Score=206.55  Aligned_cols=236  Identities=20%  Similarity=0.293  Sum_probs=196.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      .+++|++.++.|++.+.++++.+.|++|++.+.++++.++..+++++++++++|+|+++.      +++|++++++|+.+
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~l  148 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVL  148 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhh
Confidence            346788899999999999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL  170 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (300)
                      +...+....+           .+...++...|+++++.++++||+++++.++..++.+ .....++..+++.++..+...
T Consensus       149 v~~sD~~~~~-----------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~  216 (334)
T PF06027_consen  149 VVVSDVLSGS-----------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLA  216 (334)
T ss_pred             eeeecccccc-----------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            8543322111           0123567899999999999999999999999999986 888899999999999888877


Q ss_pred             Hhhcc-cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220          171 TVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV  249 (300)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~  249 (300)
                      +.+.. ....+  +.......+....++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.+
T Consensus       217 ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~  294 (334)
T PF06027_consen  217 ILERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFA  294 (334)
T ss_pred             heehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHH
Confidence            66543 21111  1222333333344567788888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccc
Q 022220          250 IIVIGFYVVMWGKAKEE  266 (300)
Q Consensus       250 li~~g~~l~~~~~~~~~  266 (300)
                      +|++|+.++...+++++
T Consensus       295 lIiiG~vvy~~~~~~~~  311 (334)
T PF06027_consen  295 LIIIGFVVYNLAESPEE  311 (334)
T ss_pred             HHHHHhheEEccCCccc
Confidence            99999999887655443

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=205.81  Aligned_cols=224  Identities=15%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHHhc-cccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhh
Q 022220           10 VTTSVLWKIFLLSLIS-CSSDFSSYIGL-QYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAG   87 (300)
Q Consensus        10 ~~~~~~~~~~~~g~~~-~~~~~~~~~al-~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~G   87 (300)
                      .+++++......|.++ +.++.+++.+. ++++++.++++.++.|+++.+++++ +|||++++      +++|++++++|
T Consensus        63 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~G  135 (292)
T PRK11272         63 PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAG  135 (292)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHh
Confidence            3566788888888887 78888999999 9999999999999999999999985 69999999      99999999999


Q ss_pred             hhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHH
Q 022220           88 AFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAM  167 (300)
Q Consensus        88 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (300)
                      +.++.. ++ .                 .+....|++++++++++||.|.+..|+..++.  +...+.++..++.+...+
T Consensus       136 v~ll~~-~~-~-----------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  194 (292)
T PRK11272        136 IVLLNS-GG-N-----------------LSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLI  194 (292)
T ss_pred             HHHHhc-Cc-c-----------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHH
Confidence            988732 11 0                 11234699999999999999999988875432  455667777888777777


Q ss_pred             HHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhh
Q 022220          168 FSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG  247 (300)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G  247 (300)
                      .....+....  ...+...|..+++++++++.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|
T Consensus       195 ~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG  272 (292)
T PRK11272        195 ASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLA  272 (292)
T ss_pred             HHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            6654332211  11244678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccc
Q 022220          248 AVIIVIGFYVVMWGKA  263 (300)
Q Consensus       248 ~~li~~g~~l~~~~~~  263 (300)
                      +++++.|+++..+.++
T Consensus       273 ~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        273 LGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876433

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.95  E-value=1.3e-26  Score=202.22  Aligned_cols=216  Identities=19%  Similarity=0.222  Sum_probs=186.0

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      +++++.+....|.++ ++++.+++.|++++++++++++.++.|+++.+++++++|||++++      ++.|+.++++|+.
T Consensus        42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~  115 (260)
T TIGR00950        42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAV  115 (260)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHH
Confidence            455777788888887 999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             hhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHH
Q 022220           90 VVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMF  168 (300)
Q Consensus        90 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (300)
                      ++. ..+   .               .+....|+++++.++++|+.+.+..|+..++.+ ++.....+.+.++.++..+.
T Consensus       116 li~-~~~---~---------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~  176 (260)
T TIGR00950       116 LLL-SDG---N---------------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPF  176 (260)
T ss_pred             hhc-cCC---c---------------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence            883 211   0               123467999999999999999999999987764 34455557788888888877


Q ss_pred             HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220          169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA  248 (300)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~  248 (300)
                      ....+++. .+   +...+..+++.+++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|+
T Consensus       177 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~  252 (260)
T TIGR00950       177 AWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGG  252 (260)
T ss_pred             HHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            76543221 11   455777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 022220          249 VIIVIGF  255 (300)
Q Consensus       249 ~li~~g~  255 (300)
                      ++++.|+
T Consensus       253 ~li~~g~  259 (260)
T TIGR00950       253 ALIIAAV  259 (260)
T ss_pred             HHHHHhc
Confidence            9999986

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.95  E-value=2.2e-26  Score=204.55  Aligned_cols=223  Identities=11%  Similarity=0.099  Sum_probs=167.5

Q ss_pred             HHHHHHHH-HHHHHHHHHhccc----cchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           18 IFLLSLIS-CSSDFSSYIGLQY----SSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        18 ~~~~g~~~-~~~~~~~~~al~~----~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      ..+.+.++ +.+..+++.++++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.
T Consensus        63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee
Confidence            33444445 7888888888754    57888899999999999999999999999999      9999999999999884


Q ss_pred             hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220           93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV  172 (300)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (300)
                      . .+...+ .       .+...+......|++++++++++||.|.+..|+..++.+ +.....   ..+.+...+.....
T Consensus       137 ~-~~~~~~-~-------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~~  203 (295)
T PRK11689        137 G-GDNGLS-L-------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFLS  203 (295)
T ss_pred             c-CCccch-h-------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHHh
Confidence            2 211000 0       000001112346999999999999999999999877664 554322   22333333322322


Q ss_pred             hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220          173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV  252 (300)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~  252 (300)
                      +...  . ..+...+..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+
T Consensus       204 ~~~~--~-~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~  279 (295)
T PRK11689        204 PQPA--M-VFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVT  279 (295)
T ss_pred             cCcc--c-cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            2111  1 123456777888884 78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q 022220          253 IGFYVVMWGKA  263 (300)
Q Consensus       253 ~g~~l~~~~~~  263 (300)
                      .|+.+..+.++
T Consensus       280 ~gv~~~~~~~~  290 (295)
T PRK11689        280 AGSLLCWLATR  290 (295)
T ss_pred             HhHHHHhhhHh
Confidence            99988866443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.95  E-value=1.1e-25  Score=199.92  Aligned_cols=221  Identities=10%  Similarity=0.063  Sum_probs=175.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhh
Q 022220            9 TVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGA   88 (300)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv   88 (300)
                      +.++++++..+..|++....+.+++.+++++|++.++++..+.|+++.+++    +|++++        ..++.++++|+
T Consensus        65 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--------~~~~~i~~~Gv  132 (293)
T PRK10532         65 RFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--------FVWVVLAVLGL  132 (293)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--------HHHHHHHHHHH
Confidence            456778888889999888888999999999999999999999999999886    355433        44567788999


Q ss_pred             hhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHH
Q 022220           89 FVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMF  168 (300)
Q Consensus        89 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (300)
                      .++. ..+...                ......|++++++++++|+.|.+..|+..++.+ +... .+...+++++..++
T Consensus       133 ~li~-~~~~~~----------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~  193 (293)
T PRK10532        133 WFLL-PLGQDV----------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPI  193 (293)
T ss_pred             heee-ecCCCc----------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHH
Confidence            8873 111111                122357999999999999999999999987765 5554 45556666666666


Q ss_pred             HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220          169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA  248 (300)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~  248 (300)
                      ....+. ...+   +...+..++++|++++.++|.+|++++++.++++++++.+++|+++.+++++++||++++.+++|+
T Consensus       194 ~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~  269 (293)
T PRK10532        194 GALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL  269 (293)
T ss_pred             HHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            554322 1111   334566678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 022220          249 VIIVIGFYVVMWGKAK  264 (300)
Q Consensus       249 ~li~~g~~l~~~~~~~  264 (300)
                      ++|+.|.....+..++
T Consensus       270 ~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        270 GAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999988765444

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.94  E-value=8.2e-25  Score=193.20  Aligned_cols=223  Identities=15%  Similarity=0.159  Sum_probs=167.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220            7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA   86 (300)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~   86 (300)
                      +++.+++.+..++..++.+..++.+++.|+++.+++.++++.++.|+++.+++++++|||++++      +++|+.+++.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~  128 (281)
T TIGR03340        55 WSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITL  128 (281)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHH
Confidence            3444444444555555555999999999999999999999999999999999999999999999      9999999999


Q ss_pred             hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhH---HHHHHHHHHHHH
Q 022220           87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALI---VMLCYQYFFSTI  163 (300)
Q Consensus        87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~  163 (300)
                      |+.++.. .+  ..                .....|+.++++++++|+.|.+..|+..++.++..   ....+......+
T Consensus       129 Gv~ll~~-~~--~~----------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~  189 (281)
T TIGR03340       129 GLLVLGL-SR--FA----------------QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGW  189 (281)
T ss_pred             HHHHHhc-cc--cc----------------ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHH
Confidence            9998832 11  10                11235788899999999999998777654433111   122222222211


Q ss_pred             HHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchh
Q 022220          164 LAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLG  243 (300)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~  243 (300)
                      ...+.....+.  ..+. .....++.+++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.
T Consensus       190 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~  266 (281)
T TIGR03340       190 PFLLLYLKRHG--RSMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT  266 (281)
T ss_pred             HHHHHHHHHhc--cchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH
Confidence            11111111111  1111 12335567788888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHH
Q 022220          244 SLVGAVIIVIGFYV  257 (300)
Q Consensus       244 ~~~G~~li~~g~~l  257 (300)
                      +++|+++++.|+.+
T Consensus       267 ~~iG~~lil~Gv~l  280 (281)
T TIGR03340       267 RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHhHHh
Confidence            99999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.93  E-value=5.3e-24  Score=189.32  Aligned_cols=216  Identities=10%  Similarity=0.070  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      ++++......++..+.++.+++.|++++|+++++++.++.|+++.+++++++|||++++      +++|++++++|+.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li  143 (296)
T PRK15430         70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHH
Confidence            33333333334444899999999999999999999999999999999999999999999      999999999999988


Q ss_pred             hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHH
Q 022220           92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSL  170 (300)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (300)
                      ....                    ++.    ..++++++++|+.|.+..|+..++.. +......+...++.....+.  
T Consensus       144 ~~~~--------------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  197 (296)
T PRK15430        144 LWTF--------------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI--  197 (296)
T ss_pred             HHHc--------------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--
Confidence            3110                    001    14578889999999999887653321 22333344444443332211  


Q ss_pred             HhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHH
Q 022220          171 TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI  250 (300)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~l  250 (300)
                       .......+...+...+..+++.|+ ++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++
T Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~l  275 (296)
T PRK15430        198 -ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAF  275 (296)
T ss_pred             -ccCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             111111111111112333444454 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 022220          251 IVIGFYVVMWG  261 (300)
Q Consensus       251 i~~g~~l~~~~  261 (300)
                      |+.|+.+....
T Consensus       276 I~~~~~v~~~~  286 (296)
T PRK15430        276 IWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHH
Confidence            99988776654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.93  E-value=3.4e-24  Score=194.45  Aligned_cols=223  Identities=15%  Similarity=0.149  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      +++++.++..|+++...+...+.|+++++++.++++..+.|+++++++++++|||++++      ++++++++++|+.+.
T Consensus       111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~  184 (350)
T PTZ00343        111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALA  184 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHhe
Confidence            45788999999999666777889999999999999999999999999999999999999      999999999999988


Q ss_pred             hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC------hhHHHHHHHHHHHHHHH
Q 022220           92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP------ALIVMLCYQYFFSTILA  165 (300)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~  165 (300)
                      ..  +                  +.+....|++++++++++|+.+.+..|+..++.+      ++.....+...++.++.
T Consensus       185 ~~--~------------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (350)
T PTZ00343        185 SV--K------------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLIS  244 (350)
T ss_pred             ec--c------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHH
Confidence            42  1                  1123467999999999999999999999987642      25556666688899888


Q ss_pred             HHHHHHhhcc--cccce----ecchhhHHHHHHHHHHHHHHHHHHHHH----HHhccCceeeecchhhHHHHHHHHHHHH
Q 022220          166 AMFSLTVVTE--LSAWK----LRLDVGLFAIAYSAVIGAAFLTTLLLW----CLMRAGPLYVSMFKPLAILFSTVMGVII  235 (300)
Q Consensus       166 ~~~~~~~~~~--~~~~~----~~~~~~~~~ll~~g~~~~~~~~~~~~~----al~~~~a~~~s~~~~~~pv~a~~l~~~~  235 (300)
                      +|+....+..  ...+.    ......+..+++. ++.+++.+.+|+.    ++++++|.+.++...++|++++++++++
T Consensus       245 lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~  323 (350)
T PTZ00343        245 LPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII  323 (350)
T ss_pred             HHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence            8887755432  11110    0011122334453 5567889999985    9999999999999999999999999999


Q ss_pred             hcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          236 FGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       236 ~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      +||++++.+++|.++++.|++++...
T Consensus       324 ~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        324 FQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             hCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.88  E-value=8.1e-21  Score=167.68  Aligned_cols=216  Identities=22%  Similarity=0.364  Sum_probs=171.9

Q ss_pred             HHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHH-HHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220           16 WKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAI-IFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF   93 (300)
Q Consensus        16 ~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~-~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~   93 (300)
                      +...+.+.++ ..++.+++.++++++++.++++.++.|+++.++++ +++|||++++      +++++.+++.|+.++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~  143 (292)
T COG0697          70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec
Confidence            4455555555 99999999999999999999999999999999997 7779999999      99999999999999942


Q ss_pred             ccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHH-HHHHHHHHHHHHHHHHh
Q 022220           94 YKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLC-YQYFFSTILAAMFSLTV  172 (300)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  172 (300)
                      ... ...               .. ...|+.+++.++++|+.+.+..|+.. +.+ +..... +..........+...  
T Consensus       144 ~~~-~~~---------------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~--  202 (292)
T COG0697         144 GGG-GGG---------------IL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL--  202 (292)
T ss_pred             CCC-cch---------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh--
Confidence            111 110               01 57899999999999999999999887 443 444444 333311111111111  


Q ss_pred             hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220          173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV  252 (300)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~  252 (300)
                      ....   .......+..+.+.|++++++++.++++++++.++...+.+.+++|+++.++++++++|+++..+++|+.+++
T Consensus       203 ~~~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~  279 (292)
T COG0697         203 SGFG---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVV  279 (292)
T ss_pred             cccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            1111   1224557888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 022220          253 IGFYVVMWG  261 (300)
Q Consensus       253 ~g~~l~~~~  261 (300)
                      .|+.+...+
T Consensus       280 ~g~~l~~~~  288 (292)
T COG0697         280 LGVLLASLR  288 (292)
T ss_pred             HHHHHHhcc
Confidence            999988765

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.86  E-value=2.2e-20  Score=154.88  Aligned_cols=224  Identities=11%  Similarity=0.047  Sum_probs=184.6

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhH
Q 022220            3 GRLIFPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTI   82 (300)
Q Consensus         3 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~   82 (300)
                      .|.-++++++++|..++.+|.+....|.+||.+++..|.+.+..+.++-|+.+++++.   |.   .+      +...+.
T Consensus        59 ~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr---~~------d~vwva  126 (292)
T COG5006          59 FRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS---RR---LR------DFVWVA  126 (292)
T ss_pred             hhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc---cc---hh------hHHHHH
Confidence            3444577888999999999999999999999999999999999999999999988862   22   22      666677


Q ss_pred             hhhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHH
Q 022220           83 VSIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFST  162 (300)
Q Consensus        83 l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~  162 (300)
                      +++.|+.++ ...++..                .+....|..+++.++.||+.|.+..+|..+..+ .-.-...-+.+++
T Consensus       127 LAvlGi~lL-~p~~~~~----------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAa  188 (292)
T COG5006         127 LAVLGIWLL-LPLGQSV----------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAA  188 (292)
T ss_pred             HHHHHHHhh-eeccCCc----------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHH
Confidence            888999888 3233222                345568999999999999999999888876544 6677778888999


Q ss_pred             HHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220          163 ILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL  242 (300)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~  242 (300)
                      ++.+|+.....++ .   ..++.-...-+..+++++.+.|.+-..++++.++...+.++.+||.++.+.|++++||.+|+
T Consensus       189 viv~Pig~~~ag~-~---l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~  264 (292)
T COG5006         189 LIVLPIGAAQAGP-A---LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL  264 (292)
T ss_pred             HHHhhhhhhhcch-h---hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence            9999998854332 1   11334555667889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhh
Q 022220          243 GSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       243 ~~~~G~~li~~g~~l~~~  260 (300)
                      .||.|.++|+.+..-..+
T Consensus       265 ~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         265 IQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            999999999998765544

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.85  E-value=8.3e-23  Score=170.32  Aligned_cols=232  Identities=19%  Similarity=0.195  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      ...+++.++|+.|..+....|+|++|++.+++++|.++.|++|.+++|+++|||.++.      ..++..+.+.|++++.
T Consensus        95 g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen   95 GKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV  168 (346)
T ss_pred             CcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe
Confidence            3446788999999999999999999999999999999999999999999999999999      9999999999999984


Q ss_pred             hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220           93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV  172 (300)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (300)
                        +.+.....++.+++.    ++......|.+.++.++++-+-.+++.|+.-|+.+ ......+...++.+.........
T Consensus       169 --RPpFlFG~~t~g~~~----s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i  241 (346)
T KOG4510|consen  169 --RPPFLFGDTTEGEDS----SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI  241 (346)
T ss_pred             --cCCcccCCCcccccc----ccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc
Confidence              222222122112222    22344455777888888888877788788877764 55555555666666655444322


Q ss_pred             hcccccceec-chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220          173 VTELSAWKLR-LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  251 (300)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li  251 (300)
                          ..|..+ ...+++.+..+|+++ .+++.+...++++..|.++++..+.+.+++.++++++|||.||++.|.|++++
T Consensus       242 ----g~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~v  316 (346)
T KOG4510|consen  242 ----GAVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMV  316 (346)
T ss_pred             ----cceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeee
Confidence                123322 356778888888854 68888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 022220          252 VIGFYVVMWGK  262 (300)
Q Consensus       252 ~~g~~l~~~~~  262 (300)
                      +.+.......|
T Consensus       317 vsS~v~~a~~k  327 (346)
T KOG4510|consen  317 VSSTVWVALKK  327 (346)
T ss_pred             ehhHHHHHHHH
Confidence            99776655433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.85  E-value=2.9e-20  Score=162.20  Aligned_cols=221  Identities=20%  Similarity=0.275  Sum_probs=189.2

Q ss_pred             HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCC
Q 022220           26 CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD  105 (300)
Q Consensus        26 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~  105 (300)
                      .+++++++.|+.+++++..+++.+++.+||.+++.++..||++..      |++++.++++|+++++..+....+     
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~~-----  238 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQNS-----  238 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccccc-----
Confidence            999999999999999999999999999999999999999999999      999999999999999654332211     


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC---hhHHHHHHHHHHHHHHHHHHHHHhhc-cccccee
Q 022220          106 IASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP---ALIVMLCYQYFFSTILAAMFSLTVVT-ELSAWKL  181 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  181 (300)
                             .........|+++++++|+.||+|.++.|+...+..   |.-.+.++..++..++++|..++... ..+.+..
T Consensus       239 -------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~l  311 (416)
T KOG2765|consen  239 -------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL  311 (416)
T ss_pred             -------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC
Confidence                   023567789999999999999999999999988873   44556667777777777766655422 2344566


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          182 RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       182 ~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      ++..+...++..++++++++-.+|.+|.-..++..+++-+.+++..+++.++++-|..+++.+++|...|+.|.+.+...
T Consensus       312 P~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  312 PSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             CCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            67777888889999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             ccc
Q 022220          262 KAK  264 (300)
Q Consensus       262 ~~~  264 (300)
                      .+.
T Consensus       392 ~~~  394 (416)
T KOG2765|consen  392 SEN  394 (416)
T ss_pred             ccc
Confidence            443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.84  E-value=7.3e-19  Score=156.83  Aligned_cols=238  Identities=18%  Similarity=0.204  Sum_probs=191.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      ++..++.++..+++..++..+.+.|++|.|.....++.++.|+++++++.+++|+|.+++      ++.++++..+|+.+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~  133 (303)
T PF08449_consen   60 RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAI  133 (303)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHhe
Confidence            344567788889999999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS  169 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (300)
                      ..+.+.......+          .....+..|+++++.+.++.+...+.+++..++++ ++...+++.+.++.+..++..
T Consensus       134 ~~~~~~~~~~~~~----------~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~  203 (303)
T PF08449_consen  134 FTLSDSSSSSSSN----------SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILL  203 (303)
T ss_pred             eeecccccccccc----------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            8653322221110          11223344999999999999999999999999875 688999999999999888777


Q ss_pred             HH--hhcccccc--eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220          170 LT--VVTELSAW--KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL  245 (300)
Q Consensus       170 ~~--~~~~~~~~--~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~  245 (300)
                      ..  ..+....+  ....+..+..++...+ +..++....+...++.+|...+++..++-+++++++++++|+++++.+|
T Consensus       204 ~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~  282 (303)
T PF08449_consen  204 FLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQW  282 (303)
T ss_pred             HHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHH
Confidence            76  22211111  1112334444444444 5566666777889999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccccc
Q 022220          246 VGAVIIVIGFYVVMWGKAKE  265 (300)
Q Consensus       246 ~G~~li~~g~~l~~~~~~~~  265 (300)
                      +|.++++.|..++.+.++|+
T Consensus       283 ~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  283 IGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHhHHHHHHHHHhhccC
Confidence            99999999999998876654

; GO: 0055085 transmembrane transport

>TIGR00688 rarD rarD protein

Probab=99.83  E-value=2.1e-19  Score=156.60  Aligned_cols=186  Identities=10%  Similarity=0.022  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220           15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY   94 (300)
Q Consensus        15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~   94 (300)
                      +..+...|++.++++.+++.|++++++++++++.++.|+++++++++++|||++++      ++++++++++|+.++...
T Consensus        70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~  143 (256)
T TIGR00688        70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL  143 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH
Confidence            44567788888999999999999999999999999999999999999999999999      999999999999887421


Q ss_pred             cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 022220           95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVT  174 (300)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (300)
                      +                    .+..    .+++.++++|+.|.+..|+..++ + ........ ........+.... .+
T Consensus       144 ~--------------------~~~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-~~  195 (256)
T TIGR00688       144 K--------------------GSLP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLLQ-TD  195 (256)
T ss_pred             c--------------------CCch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHHH-hc
Confidence            0                    0011    35688999999999998876543 2 22221111 1111121111111 11


Q ss_pred             ccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220          175 ELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  235 (300)
Q Consensus       175 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~  235 (300)
                      ........+...|..+++.|++ +.++|.++++++++.+++++++..+++|+++.+++++.
T Consensus       196 ~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       196 FATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            1110111122367888888875 88999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.78  E-value=5.3e-17  Score=138.27  Aligned_cols=219  Identities=14%  Similarity=0.105  Sum_probs=171.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      +++.+..+.+.++....++..|.+|.++-.+-++++=++..|++.++++++|+|||+++.      |++++.++.+||..
T Consensus        68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~  141 (293)
T COG2962          68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLI  141 (293)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHH
Confidence            345667777777777999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL  170 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (300)
                      ..+..|                    +...    ..+.=+++|+.|... ||..+-  ++.+-.......-....+.+.+
T Consensus       142 ~~~~~g--------------------~lpw----val~la~sf~~Ygl~-RK~~~v--~a~~g~~lE~l~l~p~al~yl~  194 (293)
T COG2962         142 QTWLLG--------------------SLPW----VALALALSFGLYGLL-RKKLKV--DALTGLTLETLLLLPVALIYLL  194 (293)
T ss_pred             HHHHcC--------------------CCcH----HHHHHHHHHHHHHHH-HHhcCC--chHHhHHHHHHHHhHHHHHHHH
Confidence            855322                    1122    235557889999777 444443  3555555555555555554444


Q ss_pred             HhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHH
Q 022220          171 TVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVI  250 (300)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~l  250 (300)
                      ..+...+.....+...++.+...|. .+.++..++..+-|+++-+..+.++|.+|..-.+++++++||+++..+++..++
T Consensus       195 ~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~  273 (293)
T COG2962         195 FLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAF  273 (293)
T ss_pred             HHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            4433322011124445666677776 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 022220          251 IVIGFYVVMWGKA  263 (300)
Q Consensus       251 i~~g~~l~~~~~~  263 (300)
                      |-+|+.++.+..-
T Consensus       274 IW~aL~l~~~d~l  286 (293)
T COG2962         274 IWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886544

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.77  E-value=3e-17  Score=145.33  Aligned_cols=220  Identities=13%  Similarity=0.141  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccch----hhhhHhhhh
Q 022220           12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAK----SLGTIVSIA   86 (300)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~----~~~~~l~~~   86 (300)
                      ++.+..-.+.|+.-+.++.+++.+.++++.+.+..+.+ +.+++..+++.+++|||.+++      +    ++|++++++
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~  129 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIII  129 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHH
Confidence            33444445555555888899999999999999999988 889999999999999999999      8    999999999


Q ss_pred             hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHH---HHHHH
Q 022220           87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQY---FFSTI  163 (300)
Q Consensus        87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~  163 (300)
                      |+.++...+++..          ++  .+..+...|+++++.++++|+.|.+..|..  ++ ++....+.+.   ++++.
T Consensus       130 G~~l~~~~~~~~~----------~~--~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~  194 (290)
T TIGR00776       130 GVYLTSRSKDKSA----------GI--KSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGI  194 (290)
T ss_pred             hHheEEecccccc----------cc--ccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHH
Confidence            9988743211100          00  000233569999999999999999998865  34 3666633333   33333


Q ss_pred             HHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220          164 LAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM-RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL  242 (300)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~-~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~  242 (300)
                      +..+...    ....+   ..+..+..+..|++ ..+++.+|..+.+ +.+++..+.+...+|+.+.+++++++||+.++
T Consensus       195 ~~~~~~~----~~~~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~  266 (290)
T TIGR00776       195 IFNLGHI----LAKPL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK  266 (290)
T ss_pred             HHHHHHh----cccch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            2222110    11112   22233334448887 6999999999999 99999999999999999999999999999999


Q ss_pred             hhh----hhhHHHHHHHHHHhh
Q 022220          243 GSL----VGAVIIVIGFYVVMW  260 (300)
Q Consensus       243 ~~~----~G~~li~~g~~l~~~  260 (300)
                      .++    +|+++++.|+.+...
T Consensus       267 ~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       267 REMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             ceeehhHHHHHHHHHHHHHHhc
Confidence            999    999999999887643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.72  E-value=2.7e-17  Score=144.71  Aligned_cols=227  Identities=19%  Similarity=0.243  Sum_probs=190.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      ++..+..++.+|++.+++..+.+.++.+.|++.++++..+.|++++++++++.+|+.+..      .+..++....|+.+
T Consensus        79 ~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~i  152 (316)
T KOG1441|consen   79 SKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAI  152 (316)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEE
Confidence            345788999999999999999999999999999999999999999999999999999999      89999999999988


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh--cC-hhHHHHHHHHHHHHHHHH-
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKE--FP-ALIVMLCYQYFFSTILAA-  166 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-  166 (300)
                      -+.                    .+.+.+..|...++++.+..+..++..++..++  .+ |++....++.-++.+.++ 
T Consensus       153 as~--------------------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~  212 (316)
T KOG1441|consen  153 ASV--------------------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLI  212 (316)
T ss_pred             eee--------------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhc
Confidence            753                    123466789999999999999999999999953  32 799999999999999998 


Q ss_pred             HHHHHhhcccc------cceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCc
Q 022220          167 MFSLTVVTELS------AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGL  240 (300)
Q Consensus       167 ~~~~~~~~~~~------~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~  240 (300)
                      |+....+++..      .|+.    .....++..+ +........+..+.+++|.+.++.+.+.-++.++.++++|+++.
T Consensus       213 P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pv  287 (316)
T KOG1441|consen  213 PFLDYVEGNKFVGFLTAPWFV----TFLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPV  287 (316)
T ss_pred             chHhhhcccceeeeeccccch----hhHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCC
Confidence            88776555432      2322    2333333333 44444555568999999999999999999999999999999999


Q ss_pred             chhhhhhhHHHHHHHHHHhhcccccccc
Q 022220          241 FLGSLVGAVIIVIGFYVVMWGKAKEENT  268 (300)
Q Consensus       241 ~~~~~~G~~li~~g~~l~~~~~~~~~~~  268 (300)
                      |+.+..|.++.+.|+++|.+.|.++++.
T Consensus       288 t~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  288 TFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            9999999999999999999887765543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=3.7e-16  Score=128.51  Aligned_cols=226  Identities=16%  Similarity=0.174  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhc
Q 022220           15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFY   94 (300)
Q Consensus        15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~   94 (300)
                      -+....++..+.++...-+.|++|+|--...+-.++-|+-+++++..+.|++.+++      +..+++..++|+.+. ++
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-mY  157 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-MY  157 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-hc
Confidence            36677888888889999999999999988888899999999999999999999999      999999999999988 55


Q ss_pred             cCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHHHhh
Q 022220           95 KGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV  173 (300)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  173 (300)
                      +.+...            +..+.....|.++.+++-..-++....+.+..+.+. ....++++.++.+.+.+....++..
T Consensus       158 K~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG  225 (337)
T KOG1580|consen  158 KENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG  225 (337)
T ss_pred             cccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh
Confidence            533322            133567788999999999999999999888887773 5678899999999988776666443


Q ss_pred             cc--cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220          174 TE--LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  251 (300)
Q Consensus       174 ~~--~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li  251 (300)
                      +-  +..+....+..++.+..+++ ++.+++++.+..+...+|-.-|++....-.|+++.++++++.+++..||+|..++
T Consensus       226 ElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlV  304 (337)
T KOG1580|consen  226 ELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLV  304 (337)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence            21  11222334456777888877 7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 022220          252 VIGFYVVMW  260 (300)
Q Consensus       252 ~~g~~l~~~  260 (300)
                      +.|+..-..
T Consensus       305 F~aL~~D~~  313 (337)
T KOG1580|consen  305 FSALTADVV  313 (337)
T ss_pred             HHHhhhHhh
Confidence            999887544

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.70  E-value=1.1e-17  Score=139.07  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      ..|+...++|+..+-++++...|.+|++...++++-.-....+.+++|+++|.|.++.      ++.|+++|++|++++.
T Consensus        76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV  149 (336)
T KOG2766|consen   76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVV  149 (336)
T ss_pred             HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEE
Confidence            3556677777777888889999999999999999999999999999999999999999      9999999999999985


Q ss_pred             hccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 022220           93 FYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTV  172 (300)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (300)
                      +.+-...            +...+.+...|+++.+++|-+||+.++..+.+.|+.+ ....+....++|+++...-....
T Consensus       150 ~sDV~ag------------d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~  216 (336)
T KOG2766|consen  150 FSDVHAG------------DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFE  216 (336)
T ss_pred             Eeeeccc------------cccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhh
Confidence            4221111            1134677889999999999999999999999999986 89999999999999988884432


Q ss_pred             hcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHH
Q 022220          173 VTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIV  252 (300)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~  252 (300)
                      .....  ...++......+. ..+++.+-|.+--..+|..+++..++-..+.-.++.+.  ..||-+.++...+..+.+.
T Consensus       217 ~~~~~--tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~  291 (336)
T KOG2766|consen  217 RHHVS--TLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIA  291 (336)
T ss_pred             cccee--eEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHH
Confidence            22221  1111222222222 44466666777777789999999999999999999998  6688889999999999999


Q ss_pred             HHHHHHhhc
Q 022220          253 IGFYVVMWG  261 (300)
Q Consensus       253 ~g~~l~~~~  261 (300)
                      .|++++..+
T Consensus       292 ~GliiYs~r  300 (336)
T KOG2766|consen  292 TGLIIYSTR  300 (336)
T ss_pred             HhhEEeecc
Confidence            999998443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.68  E-value=5.6e-15  Score=127.09  Aligned_cols=230  Identities=18%  Similarity=0.212  Sum_probs=170.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      ++++..++..-++++++++.+.|.++++++++..+++.++..++|++++++++|+|++++      ||.++.+.++|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456788999999999999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS  169 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (300)
                      +........+..  .+.+. +......+...|.++.++++++-+...+..++.+|+.+ +....+......+.++.++..
T Consensus        87 v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~  163 (244)
T PF04142_consen   87 VQLSSSQSSDNS--SSSSV-HHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL  163 (244)
T ss_pred             eecCCccccccc--ccccc-ccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            843221111100  00000 00113456789999999999999999999999999985 344555555666666665554


Q ss_pred             HHhhcc-cccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220          170 LTVVTE-LSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA  248 (300)
Q Consensus       170 ~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~  248 (300)
                      ...+.. ..+..  ...++-...+.-++...++=.+....+|+.+...-+....+..+.+.++++++++.+++....+|.
T Consensus       164 ~~~~~~~~~~~g--~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~  241 (244)
T PF04142_consen  164 LLSDGSAISESG--FFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA  241 (244)
T ss_pred             hcccccccccCC--chhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence            433221 11110  111222223333444444555566789999999999999999999999999999999999999998


Q ss_pred             HHH
Q 022220          249 VII  251 (300)
Q Consensus       249 ~li  251 (300)
                      .++
T Consensus       242 ~~V  244 (244)
T PF04142_consen  242 ALV  244 (244)
T ss_pred             ecC
Confidence            753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.63  E-value=9.5e-14  Score=121.70  Aligned_cols=238  Identities=18%  Similarity=0.165  Sum_probs=179.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      .+++..++..-++++++.+.++|.++.+.+++..++..++-.+.|+++..+++++|++++      ||.+..+.+.|+.+
T Consensus        88 ~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~  161 (345)
T KOG2234|consen   88 APRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVAL  161 (345)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHH
Confidence            345678888899999999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPA-LIVMLCYQYFFSTILAAMFS  169 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (300)
                      +.....+...         ..+.....+...|....+.+++.-+...+..++.+|+.+. .+..+.-..+++.++.+...
T Consensus       162 vQ~~~~~~~~---------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  162 VQLPSLSPTG---------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             HhccCCCCCC---------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9522111111         0001345678899999999999999999999999998753 33444445555655555555


Q ss_pred             HHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhH
Q 022220          170 LTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAV  249 (300)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~  249 (300)
                      +..+.....|. ....+|-...+.-++....+=.+....+|+.+-..-+....+..+++.+.++.+++.+||....+|..
T Consensus       233 ~~~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~  311 (345)
T KOG2234|consen  233 LLQDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL  311 (345)
T ss_pred             hhccccccccC-CccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            54432211121 11223333444444444555555557778888888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 022220          250 IIVIGFYVVMWGKAK  264 (300)
Q Consensus       250 li~~g~~l~~~~~~~  264 (300)
                      +++.++.++...+.+
T Consensus       312 lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  312 LVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHHHhhcCCcc
Confidence            999999999844443

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.60  E-value=2.7e-14  Score=106.75  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  202 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  202 (300)
                      .++++++++++++..+..|...++.+ |...+..+.+...+++..+.+... +.+.....+...|..+...|+ ++++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHHH
Confidence            57899999999999999999988885 888899998888887777766443 222222236678888888885 889999


Q ss_pred             HHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          203 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       203 ~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      .+|+++++...++++..+..+.|+++++++++++||++|..+++|+++|.+|..++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999999987754

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.57  E-value=9.4e-14  Score=118.66  Aligned_cols=223  Identities=19%  Similarity=0.226  Sum_probs=174.7

Q ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhh
Q 022220            9 TVTTS-VLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAG   87 (300)
Q Consensus         9 ~~~~~-~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~G   87 (300)
                      +..|+ ..+++...|++.++...+-+.+++|++.+..++..++.++|+.+++.+|.-||+++.      -..-+++..+|
T Consensus        77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G  150 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG  150 (349)
T ss_pred             CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence            55665 456777899999999999999999999999999999999999999999999999998      77777777778


Q ss_pred             hhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC----hhHHHHHHHHHHHHH
Q 022220           88 AFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP----ALIVMLCYQYFFSTI  163 (300)
Q Consensus        88 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~  163 (300)
                      +.+++. +                   ..+....|.++..++.++-++.....+..+++.|    +|...++...-.-.+
T Consensus       151 lflft~-K-------------------sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~  210 (349)
T KOG1443|consen  151 LFLFTY-K-------------------STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI  210 (349)
T ss_pred             eeEEEe-c-------------------ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH
Confidence            877743 2                   2345678999999999999998888888888754    678888877777777


Q ss_pred             HHHHHHHHhhccccc-----ceecchhhHH-H---HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHH
Q 022220          164 LAAMFSLTVVTELSA-----WKLRLDVGLF-A---IAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI  234 (300)
Q Consensus       164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~-~---ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~  234 (300)
                      .++|..+.+|+....     |+..+....+ .   +...|..+.++. ..-+..+.+++....++.....-+.+.+++.+
T Consensus       211 ~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~-~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~i  289 (349)
T KOG1443|consen  211 GLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE-FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAII  289 (349)
T ss_pred             HHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH-HHHHheeeeccceeeeHHHHHHHHHHHHHHHH
Confidence            788888877765332     2221221111 1   222233222222 23335678899999999999999999999999


Q ss_pred             HhcCCcchhhhhhhHHHHHHHHHH
Q 022220          235 IFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       235 ~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      +.+|.++...|.|..+...|+.+.
T Consensus       290 i~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  290 ILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HhhcchhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999999988

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.7e-13  Score=117.07  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=191.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      .++.|+.+...++.+.++..|.|.|++|++--...+-.++--+-++++..+..|.|.+..      +.....+.-.|+.+
T Consensus        79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~------eYl~~~LIs~Gvsi  152 (327)
T KOG1581|consen   79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSF------EYLVAFLISLGVSI  152 (327)
T ss_pred             CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcH------HHHHHHHHHhheee
Confidence            344678888999999999999999999999988889999999999999999999999999      99999999999988


Q ss_pred             hhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHH
Q 022220           91 VTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFS  169 (300)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (300)
                      .++.+....           .......+...|+.++...-++-+..+..+.++.+++. ++..++++.++++++.-....
T Consensus       153 F~l~~~s~s-----------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l  221 (327)
T KOG1581|consen  153 FSLFPNSDS-----------SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL  221 (327)
T ss_pred             EEEecCCCC-----------ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh
Confidence            865432221           11133467889999999999999999999999999875 789999999999999877775


Q ss_pred             HHhhcccc--cceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhh
Q 022220          170 LTVVTELS--AWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVG  247 (300)
Q Consensus       170 ~~~~~~~~--~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G  247 (300)
                      +....-..  .+.-..+..++-++...+ |..+++.+.++.+++.|+...+.++.++-++++.++.+.+|.+++..||+|
T Consensus       222 i~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g  300 (327)
T KOG1581|consen  222 ILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLG  300 (327)
T ss_pred             hcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccC
Confidence            43222111  111112334444555555 556778888899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhcccc
Q 022220          248 AVIIVIGFYVVMWGKAK  264 (300)
Q Consensus       248 ~~li~~g~~l~~~~~~~  264 (300)
                      ..+++.|+.+-...+++
T Consensus       301 ~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  301 VLIVFGGIFLEILLKKK  317 (327)
T ss_pred             eeeehHHHHHHHHHHHh
Confidence            99999999987765555

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.1e-12  Score=113.54  Aligned_cols=236  Identities=14%  Similarity=0.138  Sum_probs=194.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220            7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA   86 (300)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~   86 (300)
                      .++++++..++++...++..+..+.--.+++|.+....+++.+..|+++++....++|.+++..      .+.++...++
T Consensus        69 ~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~  142 (314)
T KOG1444|consen   69 FRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMII  142 (314)
T ss_pred             cCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHH
Confidence            3778899999999999999999999999999999999999999999999999999999999998      8888888887


Q ss_pred             hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220           87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA  165 (300)
Q Consensus        87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~  165 (300)
                      |......                    ++......|..+++...++-+.+.+..|+..+..+ +...+.++..+.+...+
T Consensus       143 ~s~~~~~--------------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l  202 (314)
T KOG1444|consen  143 GSVAAAF--------------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPL  202 (314)
T ss_pred             HHHhhcc--------------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHH
Confidence            7776632                    11233345899999999999999999998888764 56778889998888888


Q ss_pred             HHHHHHhhccc---ccc-eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcc
Q 022220          166 AMFSLTVVTEL---SAW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLF  241 (300)
Q Consensus       166 ~~~~~~~~~~~---~~~-~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~  241 (300)
                      ....++.++-.   .+. +......+..+...++++.++.|+.+ ++.+..++...++++..+-..+.+-+.++.+++.+
T Consensus       203 ~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~  281 (314)
T KOG1444|consen  203 LILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT  281 (314)
T ss_pred             HHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceec
Confidence            87776554311   010 11134457778888888888988888 99999999999999988888888888888888999


Q ss_pred             hhhhhhhHHHHHHHHHHhhccccccccc
Q 022220          242 LGSLVGAVIIVIGFYVVMWGKAKEENTI  269 (300)
Q Consensus       242 ~~~~~G~~li~~g~~l~~~~~~~~~~~~  269 (300)
                      +..++|..+-++|-.++.+.+.++++.+
T Consensus       282 ~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  282 FLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             hhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            9999999999999999988776655544

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.50  E-value=9.3e-14  Score=107.04  Aligned_cols=125  Identities=15%  Similarity=0.334  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022220          131 ILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLM  210 (300)
Q Consensus       131 ~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~  210 (300)
                      ++|+.+.+..|+..++.+ +....++++..+.+ .++.........  +...+...+...++.+++++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            468899999999999975 99999999999998 666655444322  22235567788888999888999999999999


Q ss_pred             ccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          211 RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       211 ~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      +.+++.++.+..++|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.44  E-value=7.9e-13  Score=111.68  Aligned_cols=228  Identities=12%  Similarity=0.153  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220           16 WKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK   95 (300)
Q Consensus        16 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~   95 (300)
                      ...+.-++|...+..++|.|+.+++++.-+++....-+|+.+++.-+++.+++.+      +|+|+....+|++++...+
T Consensus        87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d  160 (372)
T KOG3912|consen   87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD  160 (372)
T ss_pred             ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee
Confidence            4445577888889999999999999999999999999999999999999999999      9999999999999884321


Q ss_pred             CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHHHhh-
Q 022220           96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSLTVV-  173 (300)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (300)
                      -...+          ++-.+.++.+.|+.+.+.+-+.-|+.+++.+|.+++.+ +|....+|..+++.++...++.... 
T Consensus       161 ~~~~~----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~y  230 (372)
T KOG3912|consen  161 VHLVT----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYY  230 (372)
T ss_pred             ccccc----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence            11111          01123466788999999999999999999999999875 7999999999999776655554331 


Q ss_pred             ---c-cc-----ccce-------ecchhhHHHHHHHHHHHHHHHHHHHHHH-HhccCceeeecchhhHHHHHHHHHHHHh
Q 022220          174 ---T-EL-----SAWK-------LRLDVGLFAIAYSAVIGAAFLTTLLLWC-LMRAGPLYVSMFKPLAILFSTVMGVIIF  236 (300)
Q Consensus       174 ---~-~~-----~~~~-------~~~~~~~~~ll~~g~~~~~~~~~~~~~a-l~~~~a~~~s~~~~~~pv~a~~l~~~~~  236 (300)
                         + +.     ..|.       .....-.+.+...|...+..-|-+-..+ -|+.++++-.++-.+...+-.+++....
T Consensus       231 i~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~  310 (372)
T KOG3912|consen  231 IPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG  310 (372)
T ss_pred             eecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH
Confidence               1 10     0111       0000112333344444333333333333 3778999999999999999999999999


Q ss_pred             cCCcchhhhhhhHHHHHHHHHHh
Q 022220          237 GDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       237 ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      .|.+...|+.|.++.+.|+.++.
T Consensus       311 ~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  311 WEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=4.3e-13  Score=112.94  Aligned_cols=238  Identities=13%  Similarity=0.067  Sum_probs=188.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      ++.+..+.+..+.+...+...+-+.+++|.+++...+=.++..+|+.++.++++|+|-+..      ...+..+.+.|..
T Consensus        97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~  170 (347)
T KOG1442|consen   97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFG  170 (347)
T ss_pred             ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhe
Confidence            4556667777888888888888889999999999999999999999999999999999998      6666665555554


Q ss_pred             hhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHH
Q 022220           90 VVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMF  168 (300)
Q Consensus        90 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (300)
                      +=     .            ++++..+.....|.++.+.+.++-|+..+..|+...... .-+.++.+.+..+.++.+|.
T Consensus       171 lG-----v------------dqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpl  233 (347)
T KOG1442|consen  171 LG-----V------------DQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPL  233 (347)
T ss_pred             ec-----c------------ccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHH
Confidence            32     1            112234567788999999999999999999887766653 35688889999999999988


Q ss_pred             HHHhhcccccce---ecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220          169 SLTVVTELSAWK---LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL  245 (300)
Q Consensus       169 ~~~~~~~~~~~~---~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~  245 (300)
                      ..+..+-...+.   .+....|..+...|+++..++|.-. +=+|..+|.+-++-..-.-..-.++++.+++|..+..-|
T Consensus       234 l~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lww  312 (347)
T KOG1442|consen  234 LILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWW  312 (347)
T ss_pred             HHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhee
Confidence            876543222222   2244566667777888777777655 668999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccccccccccC
Q 022220          246 VGAVIIVIGFYVVMWGKAKEENTIDD  271 (300)
Q Consensus       246 ~G~~li~~g~~l~~~~~~~~~~~~~~  271 (300)
                      -|-.+++.|...+.+.|+.+.+++.+
T Consensus       313 tsn~~vLvgs~~YT~vk~~em~~~~~  338 (347)
T KOG1442|consen  313 TSNIVVLVGSLAYTLVKEHEMRKASA  338 (347)
T ss_pred             eeeEEEEehhHHHHHHHHHHHHhhcc
Confidence            99999999999999987766555433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.27  E-value=8.4e-11  Score=94.14  Aligned_cols=138  Identities=15%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc------ChhHHHHHHHHHHHHHHHHHHHHHhhccccccee--------c-chhh
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEF------PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKL--------R-LDVG  186 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~  186 (300)
                      |.++++.+.++.+++.+..|+..++.      .++..+..+....+.+...+..+..+........        . +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999999882      2799999999999999999998877654311110        0 2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          187 LFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       187 ~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +..++..|+++. ......+..+++.+|...+++..+..+..++++++++||++++.+++|.++.+.|.++|.|
T Consensus        81 ~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            566666666554 4455555999999999999999999999999999999999999999999999999988754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.26  E-value=4.8e-11  Score=96.11  Aligned_cols=210  Identities=17%  Similarity=0.200  Sum_probs=155.6

Q ss_pred             HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCCccCCCCC
Q 022220           26 CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPPIVRPRLD  105 (300)
Q Consensus        26 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~~  105 (300)
                      ...++.|..|+...+++.++.+..+..-|+.+++++.+|+|+...      +++++++++.|+++++..+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence            678899999999999999999999999999999999999999999      9999999999999884211          


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHH-HHHHHHhhcccccceec
Q 022220          106 IASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILA-AMFSLTVVTELSAWKLR  182 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  182 (300)
                              +.....+.|+.+++.+++.-|+|-++.|+...+.+  +....+.-..++...+. .+.........+.|...
T Consensus       128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF  199 (290)
T KOG4314|consen  128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF  199 (290)
T ss_pred             --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH
Confidence                    12345678999999999999999999999888753  22222222222222221 11111111223333321


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          183 LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       183 ~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      ...-|..+...+.+.... .++.+.++....|...|+-+..........+.++-+-..+...+.|..+|++|..+...
T Consensus       200 A~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii  276 (290)
T KOG4314|consen  200 AAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII  276 (290)
T ss_pred             hhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence            223456666665544433 34455888899999999999999899999999977778899999999999999888654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.18  E-value=5e-10  Score=99.68  Aligned_cols=139  Identities=13%  Similarity=0.104  Sum_probs=110.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccce--ecchhhHHHHHHHH
Q 022220          117 SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK--LRLDVGLFAIAYSA  194 (300)
Q Consensus       117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g  194 (300)
                      ++...|++++++++++|+...+..|.. .+.+ +....+++..++.++..+......+ .....  ..+...+ .....+
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~   79 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVS   79 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHH
Confidence            355689999999999999999998754 5565 9999999999998877766543311 11110  0012222 333456


Q ss_pred             HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          195 VIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       195 ~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      .++.+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999988765

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.17  E-value=2.2e-10  Score=96.64  Aligned_cols=230  Identities=12%  Similarity=0.101  Sum_probs=177.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220            7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA   86 (300)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~   86 (300)
                      ++..++   +-....+.+......+-..++.|++--.-.++.++--+-+++.+.++-+.|.+..      +.++.++...
T Consensus       101 ~r~iP~---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~l  171 (367)
T KOG1582|consen  101 RRVIPW---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSL  171 (367)
T ss_pred             ceecch---hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHH
Confidence            344455   4455666666777777788888887777778888888999999999999999999      9999999999


Q ss_pred             hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220           87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA  165 (300)
Q Consensus        87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~  165 (300)
                      |+.+..+.+..-                .+..+..|..+...|-++-|.-..++++.++..+ +...+.++...++.+.+
T Consensus       172 Gli~FTLADs~~----------------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vfl  235 (367)
T KOG1582|consen  172 GLIWFTLADSQT----------------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFL  235 (367)
T ss_pred             HHHhhhhccccc----------------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHH
Confidence            999887643221                2345567999999999999999999999999886 56788888888888888


Q ss_pred             HHHHHHhhcccccceec---chhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220          166 AMFSLTVVTELSAWKLR---LDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL  242 (300)
Q Consensus       166 ~~~~~~~~~~~~~~~~~---~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~  242 (300)
                      +.......+-...|..-   +.......+..+. .+.++......-++..+|..+..+....-.+++++++++|..++|.
T Consensus       236 f~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~  314 (367)
T KOG1582|consen  236 FAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTE  314 (367)
T ss_pred             HHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHH
Confidence            87777665555555311   1112222222222 4455556665677889999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcc
Q 022220          243 GSLVGAVIIVIGFYVVMWGK  262 (300)
Q Consensus       243 ~~~~G~~li~~g~~l~~~~~  262 (300)
                      ...-|..+++.|+++-.+.+
T Consensus       315 qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  315 QYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHhhhhHHHHHHHHhhcccC
Confidence            99999999999999988765

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1e-09  Score=92.94  Aligned_cols=240  Identities=14%  Similarity=0.134  Sum_probs=167.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhh
Q 022220            8 PTVTTSVLWKIFLLSLISCSSDFSSYIGLQYS-SPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIA   86 (300)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~   86 (300)
                      ++++.|++...+.   .....+.+-+.++++- |...=.++.+-.++.+++++|++.|+|.+.+      |+.++.+.-+
T Consensus        60 ~kiplk~Y~i~V~---mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDYAITVA---MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI  130 (330)
T ss_pred             CCCchhhhheehh---eeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence            5566655443332   2244455566777764 5555556677899999999999999999999      9999999999


Q ss_pred             hhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHH
Q 022220           87 GAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILA  165 (300)
Q Consensus        87 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~  165 (300)
                      |+.+.++.+.++... ...+-+.+++......|..|+.+..++-+.-|.-.+.++...+++. ++-..+++.-..+....
T Consensus       131 GiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~F  209 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLF  209 (330)
T ss_pred             hheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence            999998776655543 2223445555566778899999999999999999999999999984 78888888877765543


Q ss_pred             HHHHH-Hh-----hcccccceec-----chhhHHHHHHHHHHHHHHHHHHH---HHHHhccCceeeecchhhHHHHHHHH
Q 022220          166 AMFSL-TV-----VTELSAWKLR-----LDVGLFAIAYSAVIGAAFLTTLL---LWCLMRAGPLYVSMFKPLAILFSTVM  231 (300)
Q Consensus       166 ~~~~~-~~-----~~~~~~~~~~-----~~~~~~~ll~~g~~~~~~~~~~~---~~al~~~~a~~~s~~~~~~pv~a~~l  231 (300)
                      +...- +.     ....+.+..+     -+..|..++.    .....|.|.   +..-.+.++-+++++..+.-.++.++
T Consensus       210 lf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~----n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~  285 (330)
T KOG1583|consen  210 LFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF----NVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLF  285 (330)
T ss_pred             HHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH----HHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhh
Confidence            32210 00     0001111110     1222333322    233444443   23336678889999999999999999


Q ss_pred             HHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          232 GVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       232 ~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      +.+.|..++++.-|+|.+++.+|..++.-.
T Consensus       286 SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  286 SIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             eeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887643

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.16  E-value=2.9e-09  Score=91.77  Aligned_cols=226  Identities=14%  Similarity=0.150  Sum_probs=155.4

Q ss_pred             CCCCCH--HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHh
Q 022220            7 FPTVTT--SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIV   83 (300)
Q Consensus         7 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l   83 (300)
                      +|.++.  +.+..-++.|++-++++..+|.+.++.+++.+..+.. .+-+.+.+++.++++|.-+..+  -..-..++++
T Consensus        35 ~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~--~~~G~~Al~l  112 (269)
T PF06800_consen   35 QPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ--KIIGFLALVL  112 (269)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHH
Confidence            345543  6777777888888999999999999999999999975 7888899999999999888761  1123447777


Q ss_pred             hhhhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHH
Q 022220           84 SIAGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTI  163 (300)
Q Consensus        84 ~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  163 (300)
                      .++|+.+.+..+++...            .++..+...|....+.+.+.|..|.+..+..  +. ++.....-+. ++.+
T Consensus       113 iiiGv~lts~~~~~~~~------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqa-iGm~  176 (269)
T PF06800_consen  113 IIIGVILTSYQDKKSDK------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQA-IGML  176 (269)
T ss_pred             HHHHHHHhccccccccc------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHH-HHHH
Confidence            88888877542221111            0124566779999999999999998885542  22 3554444333 2333


Q ss_pred             HHH-HHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcch
Q 022220          164 LAA-MFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFL  242 (300)
Q Consensus       164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~  242 (300)
                      +.. .+......+  .+   .. ..+.-+..|++ -.++..++..+.++.+.+..=.+..+.++++.+.+.+++||+=+.
T Consensus       177 i~a~i~~~~~~~~--~~---~k-~~~~nil~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~  249 (269)
T PF06800_consen  177 IGAFIFNLFSKKP--FF---EK-KSWKNILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK  249 (269)
T ss_pred             HHHHHHhhccccc--cc---cc-chHHhhHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence            222 222222111  11   11 22233444443 356677788999999999999999999999999999999998776


Q ss_pred             hhh----hhhHHHHHHHHH
Q 022220          243 GSL----VGAVIIVIGFYV  257 (300)
Q Consensus       243 ~~~----~G~~li~~g~~l  257 (300)
                      .++    +|+++++.|..+
T Consensus       250 ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  250 KEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            644    588888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.14  E-value=1.4e-09  Score=96.12  Aligned_cols=133  Identities=14%  Similarity=0.192  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  202 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  202 (300)
                      .++.++++++++.+.+..|+..++.+ +.  ..+....+++...++..... ....|..... .++..+..+.++....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHH
Confidence            46789999999999999998887754 33  35555566666666655321 1123332222 33444444555777888


Q ss_pred             HHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          203 TLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       203 ~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      .++++++++.+++.++++.++.|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.14  E-value=8.7e-11  Score=96.35  Aligned_cols=236  Identities=16%  Similarity=0.146  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      .++.+.++..+++-+...+.-..+++|++....+++.++..+.++.....++|.|.+..      .....++.+..-+.-
T Consensus        65 ~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va  138 (309)
T COG5070          65 LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVA  138 (309)
T ss_pred             hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHh
Confidence            34455667777777788888889999999999999999999999999999999999988      776666554443322


Q ss_pred             hhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhHHHHHHHHHHHHHHHHHHHH
Q 022220           92 TFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFP-ALIVMLCYQYFFSTILAAMFSL  170 (300)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (300)
                      ..  ++.+.       .    .........|.+++...++.-+.+....|+..+-.. .....+++.++.+..++..+.+
T Consensus       139 ~w--~D~q~-------~----~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~  205 (309)
T COG5070         139 TW--GDQQA-------S----AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSF  205 (309)
T ss_pred             cc--chhhH-------H----HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHH
Confidence            11  11100       0    011123345888889999999999888887776543 4678899999999999988888


Q ss_pred             Hhhccccc-ce-ecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhh
Q 022220          171 TVVTELSA-WK-LRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGA  248 (300)
Q Consensus       171 ~~~~~~~~-~~-~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~  248 (300)
                      ++++-.+. .. -.+.....+++..|+.+.++.|.. .|+++..+.+..+++..++-.-..+-|.++++|+.+...+...
T Consensus       206 ~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s-aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~si  284 (309)
T COG5070         206 LFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS-AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSI  284 (309)
T ss_pred             HhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc-ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHH
Confidence            76542111 11 112334567777888666666654 4999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhccccccc
Q 022220          249 VIIVIGFYVVMWGKAKEEN  267 (300)
Q Consensus       249 ~li~~g~~l~~~~~~~~~~  267 (300)
                      .+-.++-.++...+.++++
T Consensus       285 llGflsg~iYavaks~k~q  303 (309)
T COG5070         285 LLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888876777665554333

>TIGR00688 rarD rarD protein

Probab=99.11  E-value=1.3e-09  Score=94.86  Aligned_cols=136  Identities=14%  Similarity=0.172  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhccc---ccceecchh-hHHHHHHHHHH
Q 022220          121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTEL---SAWKLRLDV-GLFAIAYSAVI  196 (300)
Q Consensus       121 ~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ll~~g~~  196 (300)
                      .|..+.++++++|+...+..|. ..+.+ +....+++++++++++.+.........   ..++..... .+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3889999999999999999887 45564 999999999999888766654332110   111111112 23345555554


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                       ..+.+.++++++++++++.++.+.++.|++++++++++++|+++..+++|..+.++|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             67889999999999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.03  E-value=5.9e-09  Score=92.46  Aligned_cols=230  Identities=18%  Similarity=0.244  Sum_probs=131.0

Q ss_pred             HHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220           17 KIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK   95 (300)
Q Consensus        17 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~   95 (300)
                      ..+..|++. .++..+.+.|+.+.|++..+.+..+.-++.++++..++|||++++      ++.|..+++.|..++.. .
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~-~  123 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI-F  123 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE-e
Confidence            445556655 788889999999999999999999999999999999999999999      99999999999988743 3


Q ss_pred             CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHH-------HHHH
Q 022220           96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTIL-------AAMF  168 (300)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  168 (300)
                      ++......+. ++..+ .-..... ......... +...+.....+|..++.  ..........+++..       ...+
T Consensus       124 ~~~~~~~~t~-~~l~~-~~~~~~f-l~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i  197 (300)
T PF05653_consen  124 APKEEPIHTL-DELIA-LLSQPGF-LVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILI  197 (300)
T ss_pred             CCCCCCcCCH-HHHHH-HhcCcce-ehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHH
Confidence            3332211100 00000 0000111 111111111 11222222212211111  110000000111110       0011


Q ss_pred             HHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhH-HHHHHHHHHHHhcCC--cchhh-
Q 022220          169 SLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFLGS-  244 (300)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~-pv~a~~l~~~~~ge~--~~~~~-  244 (300)
                      .....++ ..+  ..+..|..++. -+.+........++++++.+++.+.++.+.. ...+++-+.++++|.  .++.+ 
T Consensus       198 ~~~~~g~-~~f--~~~~~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~  273 (300)
T PF05653_consen  198 KLTFSGD-NQF--TYPLTYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI  273 (300)
T ss_pred             HHHhcCc-hhh--hhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence            1101111 111  12233433333 3456778888889999999999988887765 556666788888985  45533 


Q ss_pred             ---hhhhHHHHHHHHHHhhccc
Q 022220          245 ---LVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       245 ---~~G~~li~~g~~l~~~~~~  263 (300)
                         ..|+.+++.|+++....|+
T Consensus       274 ~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  274 IGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHhhheeeccCc
Confidence               4577888888888755433

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.94  E-value=2.1e-08  Score=91.28  Aligned_cols=139  Identities=13%  Similarity=0.137  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHH
Q 022220          121 LGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAF  200 (300)
Q Consensus       121 ~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~  200 (300)
                      .-...+++.-++|+.+.++.|..++..-++....++++.+++++++++.+..+... .+...+...+..+..+|+++ .+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~   90 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM   90 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence            34567778889999999999999988766899999999999999988877543211 11111234566777778776 45


Q ss_pred             HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH------hcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          201 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII------FGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       201 ~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~------~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      .+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|.++.++|+.+....
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            66688899999999999999999999999999999      69999999999999999999887653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.93  E-value=1e-09  Score=83.40  Aligned_cols=76  Identities=22%  Similarity=0.402  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      +++.+.++...|+++ ..++.+++.|+++.+ +.++++.++.|+++.+++++++|||++++      ++.++.++++|+.
T Consensus        30 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~  102 (113)
T PF13536_consen   30 RRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVI  102 (113)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHH
Confidence            334556677778888 699999999999999 58899999999999999999999999999      9999999999999


Q ss_pred             hhhh
Q 022220           90 VVTF   93 (300)
Q Consensus        90 ll~~   93 (300)
                      ++..
T Consensus       103 li~~  106 (113)
T PF13536_consen  103 LIAW  106 (113)
T ss_pred             HHhh
Confidence            9953

>TIGR00803 nst UDP-galactose transporter

Probab=98.93  E-value=6.7e-09  Score=88.51  Aligned_cols=206  Identities=13%  Similarity=0.040  Sum_probs=126.4

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhccCCC-----------ccCCCCCcccc
Q 022220           41 PTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYKGPP-----------IVRPRLDIASL  109 (300)
Q Consensus        41 ~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~  109 (300)
                      ........+..++++++..+.+.++|.+..      ++++..+...|+....+.+...           ..+.++...+ 
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~-   76 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK-   76 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc-
Confidence            334556677888888888888888888877      8888888888876532211100           0000000000 


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHH-HHHHHHHHHHHHHHHHHHhhcc-cccceecchhhH
Q 022220          110 DQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVM-LCYQYFFSTILAAMFSLTVVTE-LSAWKLRLDVGL  187 (300)
Q Consensus       110 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  187 (300)
                         .....+...|..+.+.++++-+...+..++..|+.+..... ......++.+............ ...+..  ..++
T Consensus        77 ---~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  151 (222)
T TIGR00803        77 ---TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGY  151 (222)
T ss_pred             ---ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCC
Confidence               01123556788888888888788888888877765422111 1222222222211111111111 111110  0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          188 FAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       188 ~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      ....+.-+++..++..+..+.+|+.++...+....++++++.+++++++||+++..+++|..+++.|++++
T Consensus       152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            11122222345667777889999999999999999999999999999999999999999999999987653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.92  E-value=2.8e-08  Score=76.91  Aligned_cols=121  Identities=15%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  201 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  201 (300)
                      |.++.+.+.++-+...++.|+-+++.+ ....... . .    ......        .      .....+++|+++.+++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~-~----~~~~~~--------~------~p~~~i~lgl~~~~la   61 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F-I----AALLAF--------G------LALRAVLLGLAGYALS   61 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H-H----HHHHHH--------h------ccHHHHHHHHHHHHHH
Confidence            677888888888999999998888864 2221111 0 0    000000        0      1122577889999999


Q ss_pred             HHHHHHHHhccCceeeecchhhHHHHHHHHHHH--HhcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220          202 TTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI--IFGDGLFLGSLVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       202 ~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~--~~ge~~~~~~~~G~~li~~g~~l~~~~~~  263 (300)
                      +.+|.+++++.+++.+..+....++...+.++.  ++||++|+.+++|.++|++|+++..+.++
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999998888888875  89999999999999999999999865433

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.88  E-value=1.2e-08  Score=77.45  Aligned_cols=107  Identities=16%  Similarity=0.334  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 022220          156 YQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVII  235 (300)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~  235 (300)
                      ++..++.++............+.+.....+.+...+..|+++...++.++.+++++.++ .++.+..++|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555542221111111122345566666777777899999999999995 88899999999999999999


Q ss_pred             hcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220          236 FGDGLFLGSLVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       236 ~ge~~~~~~~~G~~li~~g~~l~~~~~~  263 (300)
                      ++|++++.+++|.+++.+|+.+..+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999887544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.86  E-value=2.9e-08  Score=86.40  Aligned_cols=119  Identities=13%  Similarity=0.052  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022220          133 ISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA  212 (300)
Q Consensus       133 ~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~  212 (300)
                      |+...+..|...++..++....+++...+.++..+.....         .+..++...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445566677766655588889999988888776654421         1334566677778888889999999999999


Q ss_pred             CceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          213 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       213 ~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +++.++++..++|+++.+++.++++|++++.+++|.++.++|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999988754

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.86  E-value=9.9e-10  Score=82.45  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      +++|.|..+.+.|+.+++++.+||.|++...++.+..+..++|+++.+++++++|||++..      +++|+++..+|++
T Consensus        62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gai  135 (140)
T COG2510          62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAI  135 (140)
T ss_pred             cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCee
Confidence            4778899999999999999999999999999999999999999999999999999999999      9999999999998


Q ss_pred             hhh
Q 022220           90 VVT   92 (300)
Q Consensus        90 ll~   92 (300)
                      +++
T Consensus       136 lvs  138 (140)
T COG2510         136 LVS  138 (140)
T ss_pred             eEe
Confidence            874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.84  E-value=4.6e-09  Score=80.62  Aligned_cols=79  Identities=24%  Similarity=0.485  Sum_probs=74.0

Q ss_pred             CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220            7 FPTVTTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI   85 (300)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~   85 (300)
                      .+..+++++......+.++ .+++.+++.|+++.+++.++++.++.|+++.+++++++||+++++      +++|+++++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~  118 (126)
T PF00892_consen   45 FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILII  118 (126)
T ss_pred             ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHH
Confidence            3567777888889999997 999999999999999999999999999999999999999999999      999999999


Q ss_pred             hhhhhh
Q 022220           86 AGAFVV   91 (300)
Q Consensus        86 ~Gv~ll   91 (300)
                      .|+.++
T Consensus       119 ~g~~l~  124 (126)
T PF00892_consen  119 IGVVLI  124 (126)
T ss_pred             HHHHHH
Confidence            999876

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.82  E-value=1e-07  Score=84.69  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  202 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  202 (300)
                      .+..+...+.|+...+..|....+.+ +....++++.+++++.+++.......   .  ....++...+..|++.....+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHH
Confidence            45567779999999999888877665 99999999999999988776542211   1  133456666777777666777


Q ss_pred             HHHHHHH-hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          203 TLLLWCL-MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       203 ~~~~~al-~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      .+++.+. ++.+++.++++..+.|+++.+++.+ +||+++..+++|..+.++|+++...
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            8888898 9999999999999999999999986 7999999999999999999988754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.76  E-value=1.9e-07  Score=83.22  Aligned_cols=126  Identities=14%  Similarity=0.217  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  202 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  202 (300)
                      .++.++++++|+...+..|...++.+ +....++++.++++...++..   .+ . .      .+..++..|++.....+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~---~~-~-~------~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA---RP-K-V------PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc---CC-C-C------chHHHHHHHHHHHHHHH
Confidence            35678899999999999998888775 999999999988766544321   11 1 1      11223344554445556


Q ss_pred             HHHHHHHhc-cCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          203 TLLLWCLMR-AGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       203 ~~~~~al~~-~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      .+++.++++ .+++.++++..+.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            677788887 5778999999999999999999999999999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.68  E-value=4.5e-07  Score=80.65  Aligned_cols=129  Identities=13%  Similarity=-0.016  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  201 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  201 (300)
                      +.+++++++++|+...+..|...+..+ |....++++.++.++..++..   .+  ..+.   ..+..++. +.+.....
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~~--~~~~---~~~~~~~~-~~l~~~~~   74 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---FP--RLRQ---FPKRYLLA-GGLLFVSY   74 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---cc--cccc---ccHHHHHH-HhHHHHHH
Confidence            577889999999999999999888886 999999999999888775421   11  1111   11222222 33344455


Q ss_pred             HHHHHHHHh----ccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          202 TTLLLWCLM----RAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       202 ~~~~~~al~----~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      ..+++.+++    ..++..++++.++.|+++.++++++++|++++.+++|+++.++|+.+...
T Consensus        75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            555556664    46777888999999999999999999999999999999999999988764

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=2.2e-07  Score=80.81  Aligned_cols=227  Identities=16%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             HHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhhcc
Q 022220           17 KIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTFYK   95 (300)
Q Consensus        17 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~~~   95 (300)
                      +.+-.|++. .++...-|.|..+.|++..+.+..+.-++.++++..++|||++..      ..+|..++++|-.++ +.+
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~i-V~h  137 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTI-VIH  137 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEE-EEe
Confidence            344456666 888888889999999999999999999999999999999999999      999999999999988 445


Q ss_pred             CCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHH---------
Q 022220           96 GPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAA---------  166 (300)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  166 (300)
                      +|..+.-.+..+-.+.-.+....-..+....+        ..++.-....++. ......+..+.+.+-.+         
T Consensus       138 aP~e~~i~t~~el~~~~~~~~Fliy~~~iil~--------~~il~~~~~p~~g-~tnilvyi~i~s~iGS~tV~svKalg  208 (335)
T KOG2922|consen  138 APKEQEIESVEEVWELATEPGFLVYVIIIILI--------VLILIFFYAPRYG-QTNILVYIGICSLIGSLTVMSVKALG  208 (335)
T ss_pred             cCcccccccHHHHHHHhcCccHHHHHHHHHHH--------HHHHheeeccccc-ccceeehhhHhhhhcceeeeeHHHHH
Confidence            55443221111000000000111111111111        1111111122221 11222333333332111         


Q ss_pred             -HHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhH-HHHHHHHHHHHhcCC--cch
Q 022220          167 -MFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLA-ILFSTVMGVIIFGDG--LFL  242 (300)
Q Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~-pv~a~~l~~~~~ge~--~~~  242 (300)
                       .+-....+..+..   .+..|..++.+.. |........++|++..+++.++.+.+.. ..++++-+.++|+|-  .+.
T Consensus       209 ~aiklt~~g~~ql~---~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~  284 (335)
T KOG2922|consen  209 IAIKLTFSGNNQLF---YPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDA  284 (335)
T ss_pred             HHHHHHhcCCcccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence             1111112221111   2334555555444 5667777788999999999998887765 666777788999884  344


Q ss_pred             h----hhhhhHHHHHHHHHHhhccc
Q 022220          243 G----SLVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       243 ~----~~~G~~li~~g~~l~~~~~~  263 (300)
                      .    .+.|+..++.|+++....|.
T Consensus       285 ~~i~~~~~Gf~ti~~G~flL~~~kd  309 (335)
T KOG2922|consen  285 LDIAGELCGFVTIFLGIFLLHRTKD  309 (335)
T ss_pred             HHHHHHHHhHHHhhheeeEeeeecc
Confidence            4    34688888889888754433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.64  E-value=1.1e-06  Score=80.09  Aligned_cols=128  Identities=13%  Similarity=0.126  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022220          130 AILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCL  209 (300)
Q Consensus       130 a~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al  209 (300)
                      -.+-..+.+..|..++..+-|+.+..+++.++.++..........+.+... .....+..++.+|++.... +...+.++
T Consensus        58 y~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl  135 (350)
T PTZ00343         58 YALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISM  135 (350)
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333355677788888887669999999999998765444321111111111 0233566778888866544 56667999


Q ss_pred             hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          210 MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       210 ~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      ++.+++.++++..++|++++++++++++|+++..+++|.+++++|+.+..
T Consensus       136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            99999999999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.63  E-value=8e-07  Score=79.31  Aligned_cols=120  Identities=13%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 022220          135 AWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGP  214 (300)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a  214 (300)
                      .+++.+|...++.+.|......++.++.+...+.......+.  .. .+..++..++..|++ ....+.+.+.++++.++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKR--LK-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCC--CC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence            344667888888666999999999888776554411111111  11 134577778888886 47778999999999999


Q ss_pred             eeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          215 LYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       215 ~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      +..+++..+.|+++.++++++++|+++..+++|.+++++|+.+.
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999764

specificities overlap.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.63  E-value=5.2e-07  Score=77.62  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=110.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccce-ecchhhHHHHHHHHHH
Q 022220          118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWK-LRLDVGLFAIAYSAVI  196 (300)
Q Consensus       118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~  196 (300)
                      +...|+++++.+-+.|+.-.... +..+..+ +......+.+.+..++.............+. ...+..+..+...++ 
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~-kll~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-   80 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYF-KLLEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-   80 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHH-HHHccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-
Confidence            34469999999999999887774 4556665 8899999999998888777665432211111 223445555555555 


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      -....+.+|.++.++....++|.-.+++|++.+++|.++++|++++.|++..++..+|+....+
T Consensus        81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999887654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.61  E-value=3.6e-07  Score=68.92  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      ..++++.++++.++..++++.+.+.+-.+..+.++++.+++++++||++++.+++|.++++.|+.+..
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            33446778899999999999999999999999999999999999999999999999999999998754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.60  E-value=1.9e-05  Score=70.91  Aligned_cols=241  Identities=12%  Similarity=0.083  Sum_probs=147.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhcc---ccccccccchhhhhHhhh
Q 022220           10 VTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKL---KWRSKSSQAKSLGTIVSI   85 (300)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~---~~~~~~~~~~~~~~~l~~   85 (300)
                      .+.+.+..-++.|.+-.+++..++.++++...+.+..+. .++-+...++..++++|-.   +-.  ..+...+|+++.+
T Consensus        68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~lil  145 (345)
T PRK13499         68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVAL  145 (345)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHH
Confidence            355666777777877799999999999999999998884 5889999999999998654   221  1233788889999


Q ss_pred             hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHH-------HHHHHHhhhcChhHHHHHHHH
Q 022220           86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWY-------ILQAITLKEFPALIVMLCYQY  158 (300)
Q Consensus        86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------i~~~~~~~~~~~~~~~~~~~~  158 (300)
                      +|+.+.+.........       ..++..++.+...|++.++.+.+.++.|.       ...+...+...++.....-+.
T Consensus       146 iGi~l~s~Ag~~k~~~-------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~  218 (345)
T PRK13499        146 IGVAIVGRAGQLKERK-------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSY  218 (345)
T ss_pred             HHHHHHHHhhhhcccc-------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHH
Confidence            9999886522111110       00000234677889999999999999998       443322111112332222222


Q ss_pred             ---HHHHHHHH-HHHHHh--h-cccccceec--c----hhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeee----cch
Q 022220          159 ---FFSTILAA-MFSLTV--V-TELSAWKLR--L----DVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS----MFK  221 (300)
Q Consensus       159 ---~~~~~~~~-~~~~~~--~-~~~~~~~~~--~----~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s----~~~  221 (300)
                         ..+.++.- .+....  . .+...+...  +    ......-+..|+ .=.++...|..+-.+.+.....    +.+
T Consensus       219 ~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m  297 (345)
T PRK13499        219 VVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHM  297 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhc
Confidence               23333222 222211  1 111111110  1    112111123333 3356667777777777655443    344


Q ss_pred             hhHHHHHHHHHHHHhcCCcc------hhhhhhhHHHHHHHHHHhhc
Q 022220          222 PLAILFSTVMGVIIFGDGLF------LGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       222 ~~~pv~a~~l~~~~~ge~~~------~~~~~G~~li~~g~~l~~~~  261 (300)
                      .+..+++.+.|.+ +||.=+      ..-++|++++++|..+....
T Consensus       298 ~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        298 SFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             cHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            8888999999995 999755      56678999999998887654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.48  E-value=7.9e-07  Score=67.09  Aligned_cols=66  Identities=20%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             HHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           21 LSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        21 ~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      .++++ .++..++..+++..|.+.+..+.++.++++.+++++++|||++.+      +++|+.+.++|+.++.
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            33344 889999999999999999999999999999999999999999999      9999999999998873

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.36  E-value=1.2e-05  Score=70.61  Aligned_cols=142  Identities=17%  Similarity=0.282  Sum_probs=104.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHH
Q 022220          119 WILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGA  198 (300)
Q Consensus       119 ~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~  198 (300)
                      ...+..+.+..++.|+......+.............+.+...+.+...+.... . ......  ....+...+..+.+..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-E-PRGLRP--ALRPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-h-cccccc--cccchHHHHHHHHHHH
Confidence            44577888888899999988888777763324555555776666663322221 1 111111  1112445566667788


Q ss_pred             HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHH-HHhcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220          199 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGV-IIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  264 (300)
Q Consensus       199 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~-~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~  264 (300)
                      ...+.+++.++++.++...+.+.++.|+++.++++ ++++|+++..++.|..+.+.|+.+..+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            89999999999999999999999999999999997 7679999999999999999999998775444

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.23  E-value=1.5e-05  Score=70.74  Aligned_cols=131  Identities=15%  Similarity=0.108  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  201 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  201 (300)
                      |+++++.++++|+...+..|+.. ..+ +....  ...++.++..........+.  ..  ....+..-+..|+ .-.++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence            67889999999999999988765 333 33332  34445554444433322211  11  1122222222233 35677


Q ss_pred             HHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcCCcchhh----hhhhHHHHHHHHHHhhc
Q 022220          202 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGS----LVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       202 ~~~~~~al~~~~a~~~s~~~~-~~pv~a~~l~~~~~ge~~~~~~----~~G~~li~~g~~l~~~~  261 (300)
                      +.++..++++.+.+....+.+ +.+++..+++.+++||+++..+    ++|.+++++|+++....
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            899999999999999988888 8999999999999999999999    99999999998886443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.12  E-value=6.1e-05  Score=66.95  Aligned_cols=128  Identities=9%  Similarity=0.014  Sum_probs=96.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHH
Q 022220          118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG  197 (300)
Q Consensus       118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~  197 (300)
                      +...|..++++++++|+...+..|...++.+ +....++++.+++++++++......   .+   +..++...+..|++ 
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-   80 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-   80 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-
Confidence            4467899999999999999999998888876 8999999999999887765431111   11   23455556666664 


Q ss_pred             HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          198 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       198 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      .+..+.++++++++.+++.++.+..+.|+++.+++.    |++.  +..+..+.++|+.+..
T Consensus        81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~  136 (293)
T PRK10532         81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence            466677788999999999999999999999988873    5554  3455666677877654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.12  E-value=2.9e-05  Score=59.04  Aligned_cols=69  Identities=19%  Similarity=0.343  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220          194 AVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  262 (300)
Q Consensus       194 g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~  262 (300)
                      .+++.++++.++..++++++.+.+=.+ ..+..+.+.+.+++++||++++.+++|..+|++|+.......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            455668899999999999998776555 468889999999999999999999999999999998875443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.09  E-value=8e-05  Score=66.89  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=99.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHH
Q 022220          118 NWILGGFYLAAQAILISAWYILQAITLKEF-PALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVI  196 (300)
Q Consensus       118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~  196 (300)
                      +...+.++.-.-+++-+...+.+..+.++. ..|..-+++.+..-.++..+......+. ..|.......|+..+.++++
T Consensus        10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~-~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen   10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGF-KKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcccc-ccchhhcchhHHHHHHHHHH
Confidence            334455555555556666666656665553 2355555555555444544444432222 22222223455666666774


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcccc
Q 022220          197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAK  264 (300)
Q Consensus       197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~  264 (300)
                       -..+..+...|+++++.+.++++.....++++++++++++++.++.+++|+.+.+.|+.+....+..
T Consensus        89 -Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   89 -DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             -HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence             4577777779999999999999999999999999999999999999999999999999988776543

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.01  E-value=9.6e-05  Score=66.00  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhhhcC-h--hHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022220          133 ISAWYILQAITLKEFP-A--LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCL  209 (300)
Q Consensus       133 ~a~~~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al  209 (300)
                      +..+.+.+++..++.. .  +..+++.++....+...+.......+..     ....+...+..++ ...++..+.+.++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al   85 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3445677788777753 3  7788889888888887776664431111     1112333344444 4567778888999


Q ss_pred             hccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccccc
Q 022220          210 MRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKEEN  267 (300)
Q Consensus       210 ~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~~~  267 (300)
                      ++++.....+.....|+.+++++++++|++.+..++.+.+++.+|+.+....+.++.+
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            9999999999999999999999999999999999999999999999998776544433

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.90  E-value=4.7e-05  Score=58.91  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=62.6

Q ss_pred             HHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHH--HhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           18 IFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAII--FRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        18 ~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~--~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      +...|+.. .++..++..+++..|++.+..+.+..+.++.+.++.  ++||+++..      +++|+.+.++|+.++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            45667766 999999999999999999999999999888888884  899999999      9999999999999984

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.88  E-value=0.00018  Score=53.99  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          194 AVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       194 g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      .+++.++++.++..++++++.+.+=.+ ..+..+.+.+.++++|||++++.+++|.+++++|+.+....
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345667888999999999988765444 66788899999999999999999999999999999988543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.87  E-value=4.4e-06  Score=70.89  Aligned_cols=135  Identities=9%  Similarity=0.129  Sum_probs=92.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHH
Q 022220          118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIG  197 (300)
Q Consensus       118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~  197 (300)
                      ....|..+...+ .++...+++.++.....  +......++.+-.+...+..+.....  .|.  +...-.+++.=|+.+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~--v~g--p~g~R~~LiLRg~mG  107 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP--VIG--PEGKRKWLILRGFMG  107 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee--eec--CCCcEEEEEeehhhh
Confidence            556788888888 77778888888887764  45444444444433333333221111  111  111111223334444


Q ss_pred             HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          198 AAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       198 ~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +.. ..+.++++++++-+.++++....|+++++++|++++|+.|....+|..+.+.|+.+..+
T Consensus       108 ~tg-vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen  108 FTG-VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             hhH-HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence            333 34444999999999999999999999999999999999999999999999999998764

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.79  E-value=2.1e-06  Score=72.00  Aligned_cols=229  Identities=12%  Similarity=0.140  Sum_probs=146.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhh-hhHHHHHHHHHHHhhhccccccccccchhhhhHhhh
Q 022220            7 FPTVTTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLN-LIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSI   85 (300)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~   85 (300)
                      +|..+.+.+..-++.|++=..++...+.|.++.+++.+..+.. ++-+-+.+++.+.++|-.+..  .-.....++++.+
T Consensus        51 ~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~--~~IlG~iAliliv  128 (288)
T COG4975          51 SPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT--QIILGFIALILIV  128 (288)
T ss_pred             cCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch--hHHHHHHHHHHHH
Confidence            3455555555555555555899999999999999999999966 788899999999999988876  1111234555556


Q ss_pred             hhhhhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Q 022220           86 AGAFVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILA  165 (300)
Q Consensus        86 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (300)
                      .|+.+-+. +++           .|.+.++.++.-.|....+.+.+.|..|.++.+...-+.-+...-...-+.++++. 
T Consensus       129 iG~~lTs~-~~~-----------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali-  195 (288)
T COG4975         129 IGIYLTSK-QDR-----------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI-  195 (288)
T ss_pred             HhheEeee-ecc-----------ccccccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH-
Confidence            66665532 111           11112345566789999999999999998775544322212222233323333222 


Q ss_pred             HHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhh
Q 022220          166 AMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSL  245 (300)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~  245 (300)
                        +.. ...     +....+..+.-+.-|++-. .+...+..+-++.+..+.=.+..+..+.+.+-+.++++|+=|..++
T Consensus       196 --~~~-~~~-----~~~~~K~t~~nii~G~~Wa-~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm  266 (288)
T COG4975         196 --LGF-FKM-----EKRFNKYTWLNIIPGLIWA-IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM  266 (288)
T ss_pred             --Hhh-ccc-----ccchHHHHHHHHhhHHHHH-hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh
Confidence              122 111     1112233344445555443 4455555788888888887888888999999999999999888775


Q ss_pred             ----hhhHHHHHHHHHHh
Q 022220          246 ----VGAVIIVIGFYVVM  259 (300)
Q Consensus       246 ----~G~~li~~g~~l~~  259 (300)
                          +|..+++.|..+.-
T Consensus       267 ~~v~iGiilivvgai~lg  284 (288)
T COG4975         267 VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             hhhhhhHHHHHHHhhhhh
Confidence                57888888766543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.79  E-value=8.6e-05  Score=66.02  Aligned_cols=119  Identities=17%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHH
Q 022220          117 SNWILGGFYLAAQAILISAWYILQAITLKEFPA-LIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAV  195 (300)
Q Consensus       117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~  195 (300)
                      .++..|..+++.++++.+...+++|+...|.+. .....                  .+....+.  ++     ..+.|+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~~~~~l~--~~-----~W~~G~   57 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SGGRSYLR--RP-----LWWIGL   57 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------chhhHHHh--hH-----HHHHHH
Confidence            567889999999999999999999988777541 00000                  00000000  11     122333


Q ss_pred             HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +...++..+...++...+++.++++..+..+++.+++..++||+++...+.|+++++.|..+...
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            34456667777899999999999999999999999999999999999999999999999887654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.66  E-value=0.00076  Score=52.90  Aligned_cols=131  Identities=12%  Similarity=0.116  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLT  202 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  202 (300)
                      .++++.+..+-++...++.++.++..++....+..+..+.+......++..+.  .+.......|+..+ .|++ .....
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence            56788889999999999999988876799999999999999988887766543  22211222333333 4554 45556


Q ss_pred             HHHHHHHhccCceeeecchhh-HHHHHHHHHHH----HhcCCcchhhhhhhHHHHHHHHH
Q 022220          203 TLLLWCLMRAGPLYVSMFKPL-AILFSTVMGVI----IFGDGLFLGSLVGAVIIVIGFYV  257 (300)
Q Consensus       203 ~~~~~al~~~~a~~~s~~~~~-~pv~a~~l~~~----~~ge~~~~~~~~G~~li~~g~~l  257 (300)
                      .+..+.+++++++....+... +.+.+.+++.+    .-++++++.+++|.+++++|+.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            666688999999877665544 56677777775    34568899999999999999864

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.61  E-value=0.00086  Score=50.12  Aligned_cols=64  Identities=16%  Similarity=0.242  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      +++..+++.+...++|+++.+. .++...+-.+.+.+.+++++||++++.+++|.++++.|+...
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3355788889999999988855 466667888899999999999999999999999999999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.60  E-value=0.00034  Score=53.22  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           19 FLLSLISCSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        19 ~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      .+.-.+.+.+.+++..++++.|.+.+-.+. ...-+.+.+++++++||+++..      +++|+.+.++|+..+-
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            344444499999999999999999997664 6889999999999999999999      9999999999998884

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00025  Score=52.28  Aligned_cols=67  Identities=24%  Similarity=0.399  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      +++..++|.+..+++|+++... .++....-.+.+.+.++++|||++++.+++|..+++.|+......
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            3455788999999999988754 467778889999999999999999999999999999999887654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.52  E-value=0.00035  Score=52.23  Aligned_cols=70  Identities=13%  Similarity=0.025  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           16 WKIFLLSLISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        16 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      ......-.+..+++++...++++.|.+.+-.+ ....-+.+.+.+++++||+++..      +++|+.+.+.|++.+
T Consensus        36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            33444444458899999999999999998555 55888999999999999999999      999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.51  E-value=0.0011  Score=49.30  Aligned_cols=66  Identities=15%  Similarity=0.293  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          195 VIGAAFLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       195 ~~~~~~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +++.++++.+...++|+++.+. .++...+-.+.+.+.+++++||++++.+++|..+++.|+.....
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            4456788899999999988855 46667788899999999999999999999999999999988643

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.00037  Score=51.40  Aligned_cols=67  Identities=16%  Similarity=0.060  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHhccccchhhHH-HHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           19 FLLSLISCSSDFSSYIGLQYSSPTLNT-AMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        19 ~~~g~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      .+.-++..++++++-.++++.|.+.+- +-...-.+-+++.+++++||+++..      +++++.+.++|++.+
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            333444489999999999999999984 4466888999999999999999999      999999999999887

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.43  E-value=0.00042  Score=59.84  Aligned_cols=69  Identities=17%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccc
Q 022220          197 GAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  265 (300)
Q Consensus       197 ~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~  265 (300)
                      .-.++..+.+.++++++|+...++..+..+++.++++++++.+++..||++..+.++|+.+........
T Consensus        26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            456777888899999999999999999999999999999999999999999999999999987755443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.43  E-value=0.00058  Score=50.76  Aligned_cols=67  Identities=12%  Similarity=-0.039  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           19 FLLSLISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        19 ~~~g~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      ...-.+...+++++..+++..|.+.+-.+ ....-+.+.+.+++++||+++..      +++++.+.++|++.+
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            34444449999999999999999998555 55888999999999999999999      999999999999887

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.42  E-value=0.00053  Score=51.45  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           23 LISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        23 ~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      .+..++.+++..+++..|.+.+-.+ ....-+.+.+++++++||+++..      +++|+.+.++|+..+-
T Consensus        38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3338899999999999999999666 55888999999999999999999      9999999999999883

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.41  E-value=0.0026  Score=55.20  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcCCcchhhhh----hhHHHHHHHHHHh
Q 022220          185 VGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLV----GAVIIVIGFYVVM  259 (300)
Q Consensus       185 ~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~~~~~~~----G~~li~~g~~l~~  259 (300)
                      ..++.-+..|++- .+++..++.+.++.+.++..++. .++-+.+.++++++|||..+..+++    +.+++++|+++..
T Consensus        43 ~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   43 TSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            4555556666654 57888888999999999999988 5677789999999999988766654    6777788998887


Q ss_pred             hccccccc
Q 022220          260 WGKAKEEN  267 (300)
Q Consensus       260 ~~~~~~~~  267 (300)
                      ++++++++
T Consensus       122 ~~~~~~~~  129 (269)
T PF06800_consen  122 YQDKKSDK  129 (269)
T ss_pred             cccccccc
Confidence            76555443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.38  E-value=0.0012  Score=48.12  Aligned_cols=57  Identities=26%  Similarity=0.396  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHH
Q 022220          195 VIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVII  251 (300)
Q Consensus       195 ~~~~~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li  251 (300)
                      +.+.++++.++.+++|+++.+.+ .+...+..+.+.+.+++++||++|+.+++|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34667888999999999999888 4456689999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.33  E-value=0.0027  Score=57.27  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHH--HHHHHHH-HHHHHHHhhcc-cccceecchhhHHHHHHH
Q 022220          118 NWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQ--YFFSTIL-AAMFSLTVVTE-LSAWKLRLDVGLFAIAYS  193 (300)
Q Consensus       118 ~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~  193 (300)
                      +...|+++++++++||+.+.+-.|+ .|+.+  .+.. |-  .+++.++ ....+.+..+. .......+...+..-+..
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            4578999999999999999999887 55543  1111 11  1111111 11112211111 111111234445555555


Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcCCc---c----hhhhhhhHHHHHHHHHHhhccc
Q 022220          194 AVIGAAFLTTLLLWCLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGL---F----LGSLVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       194 g~~~~~~~~~~~~~al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~---~----~~~~~G~~li~~g~~l~~~~~~  263 (300)
                      |++- .++...+..++++.+.+....+. -++-+.+.+++.+++||-.   +    ...++|.+++++|+.+..+...
T Consensus        80 G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         80 GALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6644 57788888999999998876654 5678899999999999754   2    2355788999999999887433

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.0035  Score=49.35  Aligned_cols=139  Identities=9%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHH
Q 022220          120 ILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAA  199 (300)
Q Consensus       120 ~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~  199 (300)
                      .+..++.+.+.++-....-+..++.+...+|....+..+..+++.+..+.++.+. ...+.......|| ....|++ ..
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW-~~~GG~l-Ga   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWW-AWIGGLL-GA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchH-HHHccch-hh
Confidence            3457788888999999999999998888779999999999999988888776433 2223211222233 3333443 33


Q ss_pred             HHHHHHHHHHhccCcee-eecchhhHHHHHHHHHHHHhc----CCcchhhhhhhHHHHHHHHHHhhc
Q 022220          200 FLTTLLLWCLMRAGPLY-VSMFKPLAILFSTVMGVIIFG----DGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       200 ~~~~~~~~al~~~~a~~-~s~~~~~~pv~a~~l~~~~~g----e~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      +-.+.......+.+++. ...+..-+.+.+.+++-+=+.    .+++...++|.+++++|+++.+++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            44444446667777654 445555667778888776554    578999999999999996665443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.24  E-value=0.0011  Score=52.63  Aligned_cols=73  Identities=18%  Similarity=0.389  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           12 TSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        12 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      .+.+..+...|++....+.+.+..++++++-..++......+.+.++++++++|+++..      ++.|++++++|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            34566777778888999999999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.00  E-value=0.0038  Score=53.88  Aligned_cols=127  Identities=9%  Similarity=0.095  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcc-cccceecch-----hhHHHHHHHHH
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTE-LSAWKLRLD-----VGLFAIAYSAV  195 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~ll~~g~  195 (300)
                      |.+.++.|+++++...+=.|+.-..  |.+....++.....+..+...+..+.+ ...|....+     .....+-..-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            5677888889998887765554322  577777777776666666666544321 111110000     00111111112


Q ss_pred             HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHH-HhcCC-----cchhhhhhhHHHHHHHHHHhhccccc
Q 022220          196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVI-IFGDG-----LFLGSLVGAVIIVIGFYVVMWGKAKE  265 (300)
Q Consensus       196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~-~~ge~-----~~~~~~~G~~li~~g~~l~~~~~~~~  265 (300)
                      ++.++++.+|               ...+.+.+...+.+ +||++     -....++|.+++++|..++..-|.++
T Consensus        79 iGLglg~liW---------------~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   79 IGLGLGMLIW---------------GSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             hhhHHHHHHH---------------HHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            2334445554               34455666666644 55543     25677899999999988887765554

The region concerned is approximately 280 residues long.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.79  E-value=0.0043  Score=45.10  Aligned_cols=54  Identities=19%  Similarity=0.037  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHh
Q 022220           24 ISCSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIV   83 (300)
Q Consensus        24 ~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l   83 (300)
                      +++.+..++..++++.|.+.+-.+ ..+..+.+.+.+.+++||+++..      ++.|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            448899999999999999999555 56899999999999999999999      9988765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.078  Score=47.45  Aligned_cols=138  Identities=12%  Similarity=0.054  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcC---hhHHHHHHHHHHHHHHHHHHHHHhhcc-cccc----e---ecchhhHHHHH
Q 022220          123 GFYLAAQAILISAWYILQAITLKEFP---ALIVMLCYQYFFSTILAAMFSLTVVTE-LSAW----K---LRLDVGLFAIA  191 (300)
Q Consensus       123 ~~~~l~aa~~~a~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~---~~~~~~~~~ll  191 (300)
                      .+.++...+.++......+...++.+   .+.+..+..-++-.++.....+..+.. ...+    +   ...+.+.+-+.
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~   96 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS   96 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence            44445555566666666555555441   355666666666666655555544311 0111    0   11111222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      .= .+...+...+++.++.+.+|++..+...+..+.+.++.+++++++++..||...++...|+.+.+..
T Consensus        97 vP-a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen   97 VP-ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             HH-HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            11 2234566668889999999999999999999999999999999999999999999999999999843

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.59  E-value=0.21  Score=44.63  Aligned_cols=241  Identities=15%  Similarity=0.169  Sum_probs=138.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-HhhhhHHHHHHHHHHHhhhccc-cccccccchhhhhHhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTA-MLNLIPAFTFILAIIFRMEKLK-WRSKSSQAKSLGTIVSIAGA   88 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~~~ila~~~~~e~~~-~~~~~~~~~~~~~~l~~~Gv   88 (300)
                      +...+....+.|++=.++...|-.+++|+..+...- ...+..++-.++-.++.++--. ..+...+..++|+.++++|+
T Consensus        69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI  148 (344)
T PF06379_consen   69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI  148 (344)
T ss_pred             ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence            445667777888888899999999999998887744 4556777777776666442100 11112344899999999999


Q ss_pred             hhhhhccCCCccCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh------h-cChhH----HHHHHH
Q 022220           89 FVVTFYKGPPIVRPRLDIASLDQIQPLQSNWILGGFYLAAQAILISAWYILQAITLK------E-FPALI----VMLCYQ  157 (300)
Q Consensus        89 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~------~-~~~~~----~~~~~~  157 (300)
                      .++.......+.       +.. ...++.+.-.|.+.++.+.+.-|..++-...-..      . ..++.    ......
T Consensus       149 ai~g~AG~~Ke~-------~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv  220 (344)
T PF06379_consen  149 AICGKAGSMKEK-------ELG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVV  220 (344)
T ss_pred             HHHhHHHHhhhh-------hhc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhh
Confidence            998542111111       000 1123556778999999998888877665322111      0 00111    122233


Q ss_pred             HHHHHHHHHHHHHHhhcccccc---ee------cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCce----eeecchhhH
Q 022220          158 YFFSTILAAMFSLTVVTELSAW---KL------RLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPL----YVSMFKPLA  224 (300)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~----~~s~~~~~~  224 (300)
                      +.-+.+.-+.+.+........+   ..      .....+..-+..|++- ..++++|.++-.++++.    --.+.+.+.
T Consensus       221 ~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lW-y~qfffYg~G~s~lg~~~~~~sW~i~ma~~  299 (344)
T PF06379_consen  221 LWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLW-YSQFFFYGMGESKLGASGPFSSWAIHMALI  299 (344)
T ss_pred             hhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence            3444444445544332111111   10      0112333333334432 35566666776777643    345667778


Q ss_pred             HHHHHHHHHHHhcC------CcchhhhhhhHHHHHHHHHHhhc
Q 022220          225 ILFSTVMGVIIFGD------GLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       225 pv~a~~l~~~~~ge------~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      .+++-+++.+ ++|      ++-..-++|++++++++.++-++
T Consensus       300 vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G  341 (344)
T PF06379_consen  300 VLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGYG  341 (344)
T ss_pred             HHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            8888888887 666      23344567888888888776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.42  E-value=0.012  Score=44.23  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022220          128 AQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLW  207 (300)
Q Consensus       128 ~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~  207 (300)
                      +-+++|+..+-+.||..+..++.....  +..-....    .+      ..|      .+.    ..+.....+...|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~----Ll------~n~------~y~----ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF----LL------LNP------KYI----IPFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH----HH------HhH------HHH----HHHHHHHHHHHHHHH
Confidence            346788999889898888764222111  21111111    11      011      111    122233456677779


Q ss_pred             HHhccCceeeecch-hhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          208 CLMRAGPLYVSMFK-PLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       208 al~~~~a~~~s~~~-~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      .+.+.+-+.+.++. .+.-+++.+.++++.+|..++..++|+++++.|+.++
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99999999999994 9999999999998888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.31  E-value=0.013  Score=49.93  Aligned_cols=75  Identities=21%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           11 TTSVLWKIFLLSLIS-CSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      +++....-+..|++. ++.+.+--.+++..|...-+++.++.|.+.++.++++++|+++..      ||+++...+.+..
T Consensus       205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            445556667788888 999999999999999999999999999999999999999999999      9999988877765


Q ss_pred             hh
Q 022220           90 VV   91 (300)
Q Consensus        90 ll   91 (300)
                      =.
T Consensus       279 G~  280 (292)
T COG5006         279 GS  280 (292)
T ss_pred             cc
Confidence            33

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.26  E-value=0.0021  Score=54.33  Aligned_cols=132  Identities=12%  Similarity=0.038  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHH
Q 022220          122 GGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFL  201 (300)
Q Consensus       122 G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  201 (300)
                      +.+.++.=++.|+.......+.-.+   |..-+..+.+.+.++.+.+.+ ...+.  .   +...+..-+..|++-+ .+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~lGtT~GALifaiiv~~-~~~p~--~---T~~~~iv~~isG~~Ws-~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTLGTTLGALIFAIIVFL-FVSPE--L---TLTIFIVGFISGAFWS-FG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC---hhHhhhhccHHHHHHHHHHhe-eecCc--c---chhhHHHHHHhhhHhh-hh
Confidence            4567788889998876664433222   333333333333333333333 22211  1   2334444455566554 67


Q ss_pred             HHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcCCcchhhhh----hhHHHHHHHHHHhhccc
Q 022220          202 TTLLLWCLMRAGPLYVSMFKP-LAILFSTVMGVIIFGDGLFLGSLV----GAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       202 ~~~~~~al~~~~a~~~s~~~~-~~pv~a~~l~~~~~ge~~~~~~~~----G~~li~~g~~l~~~~~~  263 (300)
                      +..++++++.++.+++.++.. ++-+-+.+++++.|||..++.+++    ..+++++|+++..++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            888889999999999998765 667888999999999999988874    55666678777665444

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.0033  Score=55.19  Aligned_cols=124  Identities=15%  Similarity=0.178  Sum_probs=95.4

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHH
Q 022220          114 PLQSNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYS  193 (300)
Q Consensus       114 ~~~~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  193 (300)
                      ....++..|.++++.+.++.+...++.|+..+|.. .   ...               ..+ ...+..    ......|.
T Consensus        14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~---------------ra~-~gg~~y----l~~~~Ww~   69 (335)
T KOG2922|consen   14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGL---------------RAG-EGGYGY----LKEPLWWA   69 (335)
T ss_pred             hhccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hcc---------------ccc-CCCcch----hhhHHHHH
Confidence            34567788999999999999999999888777753 1   110               000 111111    11234566


Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          194 AVIGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       194 g~~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      |++.++++-...+.+....+++.++.+..+..+.+.+++..+++|+++....+|+++.++|..+....
T Consensus        70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            77777888888888889999999999999999999999999999999999999999999998765543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.18  E-value=0.043  Score=41.18  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             HHHH-HHHHHHHHHhccccchhhHHHHh-hhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhh
Q 022220           22 SLIS-CSSDFSSYIGLQYSSPTLNTAML-NLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVV   91 (300)
Q Consensus        22 g~~~-~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll   91 (300)
                      .+.. -.+...||..+...+.+.+..+. ++.=++|++.++++.+|..+++      .++|+.+.++|+.++
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            3433 67778889999999999999996 5788999999988888888888      899999999998764

Many members are annotated as potential transmembrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.89  E-value=0.018  Score=51.44  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022220          135 AWYILQAITLK--EFPALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRA  212 (300)
Q Consensus       135 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~  212 (300)
                      ..++..|+.++  ..+-|...+......+.+.....-.+...+.  .+..+...+..++-+|++ ..++..+-+.++++.
T Consensus        31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~--~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v  107 (316)
T KOG1441|consen   31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP--SKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYV  107 (316)
T ss_pred             eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHH-HHHHHHhcchhhhcc
Confidence            34556777777  4556788888877777777665555432222  222234467777777774 457777778999999


Q ss_pred             CceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHH
Q 022220          213 GPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGF  255 (300)
Q Consensus       213 ~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~  255 (300)
                      +.+...++-.++|+++.++++++.+|+.+...+.-...++.|+
T Consensus       108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV  150 (316)
T KOG1441|consen  108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGV  150 (316)
T ss_pred             chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeE
Confidence            9999999999999999999999999998775544444444443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.43  E-value=0.024  Score=50.91  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccccc
Q 022220          199 AFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKAKE  265 (300)
Q Consensus       199 ~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~~~  265 (300)
                      .++...++.++++.+.+..+++....-+|+..++.++.+|++|..+.++..+-+.|++++..++.++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            4566777899999999999999999999999999999999999999999999999999988876665

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.26  E-value=0.053  Score=45.74  Aligned_cols=74  Identities=19%  Similarity=0.346  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhh
Q 022220           13 SVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVT   92 (300)
Q Consensus        13 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~   92 (300)
                      ..|+.+.+.+++++++++|.|.-..+-++-.-+++..+--+||.+.+.++++.+++.+      ||+|..+.+.|...-.
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            3678888999999999999999999999888888999999999999999999999999      9999999999987663

>TIGR00803 nst UDP-galactose transporter

Probab=94.10  E-value=0.047  Score=46.28  Aligned_cols=66  Identities=14%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhh
Q 022220           18 IFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        18 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      .+...++.+....|....+++.++...++...+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            34444556777788899999999999999999999999999999999999999      9999999988875

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.70  E-value=0.19  Score=44.08  Aligned_cols=75  Identities=16%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhh
Q 022220           11 TTSVLWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      .++.++.+++++.++++++.+.|+-++.-++-.-+.|.-+-=++..+++.+.++.++++.      |+.|+.+.+.|+.+
T Consensus       237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL  310 (327)
T ss_pred             ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence            456788999999999999999999999988888888888999999999999999999999      99999999988865


Q ss_pred             h
Q 022220           91 V   91 (300)
Q Consensus        91 l   91 (300)
                      =
T Consensus       311 ~  311 (327)
T KOG1581|consen  311 E  311 (327)
T ss_pred             H
Confidence            4

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.24  E-value=2.4  Score=37.63  Aligned_cols=123  Identities=14%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhhhcC--hhHHHHHHHHHHHHHHHHHHHHHhhcccccceecchhhHHH--HHHHHHHHHHHHHHHH
Q 022220          130 AILISAWYILQAITLKEFP--ALIVMLCYQYFFSTILAAMFSLTVVTELSAWKLRLDVGLFA--IAYSAVIGAAFLTTLL  205 (300)
Q Consensus       130 a~~~a~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ll~~g~~~~~~~~~~~  205 (300)
                      +++-..-.+..|..+..++  ..+....+|.+.+.+.....-...-...+.........|.-  +++.+      ....-
T Consensus        21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~------~i~t~   94 (314)
T KOG1444|consen   21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG------MLFTG   94 (314)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH------HHHHc
Confidence            3333344566677777775  34444558888877776655443222222221112222221  22222      12223


Q ss_pred             HHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          206 LWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       206 ~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      ..++++++.....++..++|+++++.+..++|-+++...+....++++|....
T Consensus        95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen   95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            37899999999999999999999999999999999999999999999886654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=92.12  E-value=0.064  Score=44.01  Aligned_cols=63  Identities=16%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhccc
Q 022220          201 LTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGKA  263 (300)
Q Consensus       201 ~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~~  263 (300)
                      +...|..++++++|+.++.+..-+-.+..+++++.+|++.....++...+.+.|+.+..+.+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            355677999999999999999999999999999999999999999999999999888765443

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.64  E-value=1.7  Score=39.03  Aligned_cols=144  Identities=17%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH--Hhhccc-ccceecchhhHHHHHHH
Q 022220          117 SNWILGGFYLAAQAILISAWYILQAITLKEFPALIVMLCYQYFFSTILAAMFSL--TVVTEL-SAWKLRLDVGLFAIAYS  193 (300)
Q Consensus       117 ~~~~~G~~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ll~~  193 (300)
                      ..-..|+++..+++++-+.+++=.||. |+.+ -...=..+.+++-+ ..|...  +.-++. +.+...+...+......
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~   79 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLF   79 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence            345789999999999999998886655 4442 22222222223322 233322  221121 11112133344444555


Q ss_pred             HHHHHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcCC-------cchhhhhhhHHHHHHHHHHhhcccc
Q 022220          194 AVIGAAFLTTLLLWCLMRAGPLYV-SMFKPLAILFSTVMGVIIFGDG-------LFLGSLVGAVIIVIGFYVVMWGKAK  264 (300)
Q Consensus       194 g~~~~~~~~~~~~~al~~~~a~~~-s~~~~~~pv~a~~l~~~~~ge~-------~~~~~~~G~~li~~g~~l~~~~~~~  264 (300)
                      |++- +++-..|-.++++++.+.. ++..-+..++..++--++.|+.       -....++|.+++++|+.+.-+....
T Consensus        80 G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~  157 (344)
T PF06379_consen   80 GVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM  157 (344)
T ss_pred             HHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence            6644 4666777799999998654 3444555666666666654431       2335678999999999988765443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK02237 hypothetical protein; Provisional

Probab=90.78  E-value=0.91  Score=33.52  Aligned_cols=45  Identities=18%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             ecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220          218 SMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  262 (300)
Q Consensus       218 s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~  262 (300)
                      +...-.-.+.+.++++.+-|++|+...++|.+++++|+.+..+..
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            344556678899999999999999999999999999998876543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=89.20  E-value=0.37  Score=41.90  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          196 IGAAFLTTLLLWCLMRAGPLYVSMFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       196 ~~~~~~~~~~~~al~~~~a~~~s~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      +|-..+..+.+.++..++|+...++.....+|+-+++.-+++.+++..+|+|...+.+|+..+...
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            466677777779999999999999999999999999999999999999999999999999876543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=88.89  E-value=3  Score=36.91  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=80.2

Q ss_pred             HHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhcccccc-eecchhhHHHHHHHHHHHHHHHHHHHHHHHhccCceeee
Q 022220          140 QAITLKEFPALIVMLCYQYFFSTILAAMFSLTVVTELSAW-KLRLDVGLFAIAYSAVIGAAFLTTLLLWCLMRAGPLYVS  218 (300)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~g~~~~~~~~~~~~~al~~~~a~~~s  218 (300)
                      .++..++++=|+..+...+.+-.+...............- ...+....+--+.-..+++++-..+.++++++.+.+..+
T Consensus        35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYT  114 (349)
T KOG1443|consen   35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYT  114 (349)
T ss_pred             hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeee
Confidence            3445455544666666666555555544444433222211 111122222222333347788899999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhh
Q 022220          219 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMW  260 (300)
Q Consensus       219 ~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~  260 (300)
                      +.-...++|-.+++.++-=|++++.-..=..+|-.|+++..+
T Consensus       115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~  156 (349)
T KOG1443|consen  115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY  156 (349)
T ss_pred             eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence            999999999999999999999998877777777777766543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=87.82  E-value=0.87  Score=35.61  Aligned_cols=70  Identities=19%  Similarity=0.240  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhhh-hHHHHHHHHHH----HhhhccccccccccchhhhhHhhhhhhh
Q 022220           15 LWKIFLLSLISCSSDFSSYIGLQYSSPTLNTAMLNL-IPAFTFILAII----FRMEKLKWRSKSSQAKSLGTIVSIAGAF   89 (300)
Q Consensus        15 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~-~pi~~~ila~~----~~~e~~~~~~~~~~~~~~~~~l~~~Gv~   89 (300)
                      .++..+-|++++..-.+.......++++.+..+.-+ +-+...++..+    .-|++++++      +++|+++.++|+.
T Consensus        64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI  137 (138)
T ss_pred             ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence            456667999999999999999999999998887665 44444444443    356888888      9999999999986


Q ss_pred             h
Q 022220           90 V   90 (300)
Q Consensus        90 l   90 (300)
                      +
T Consensus       138 L  138 (138)
T PF04657_consen  138 L  138 (138)
T ss_pred             C
Confidence            4

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=87.45  E-value=0.72  Score=33.94  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             chhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220          220 FKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  262 (300)
Q Consensus       220 ~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~  262 (300)
                      ..-.-.+.+.++++.+-|++|+...++|..++++|+.+..+..
T Consensus        63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            3445567899999999999999999999999999998876643

; GO: 0016020 membrane

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=87.39  E-value=6  Score=38.23  Aligned_cols=40  Identities=15%  Similarity=0.112  Sum_probs=18.3

Q ss_pred             cchhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHH
Q 022220          219 MFKPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVV  258 (300)
Q Consensus       219 ~~~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~  258 (300)
                      ......|+-+.++|.+.-.-..+....++++.++++..+.
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3344456666667766443333333333333333333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=87.36  E-value=0.18  Score=43.68  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=0.0

Q ss_pred             chhhHHHHhhhhHHHHHH-HHHHHhhhcc-ccccccccchhhhhHhhhhhhhh
Q 022220           40 SPTLNTAMLNLIPAFTFI-LAIIFRMEKL-KWRSKSSQAKSLGTIVSIAGAFV   90 (300)
Q Consensus        40 ~~~~~~~i~~~~pi~~~i-la~~~~~e~~-~~~~~~~~~~~~~~~l~~~Gv~l   90 (300)
                      +-+-.+++++.+.+.+.| +.++++|+|+ -..      ..+++++.+.-+.+
T Consensus        48 t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPL------GlLCiilimi~lLv   94 (381)
T PF05297_consen   48 TQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPL------GLLCIILIMIVLLV   94 (381)
T ss_dssp             -----------------------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hHHHHHHHHHHHHH
Confidence            333344555544433333 3334455443 344      55555555544433

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional

Probab=85.76  E-value=19  Score=29.92  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=23.1

Q ss_pred             HHHHHHHhcCCcchhhhhhhHHHHH--HHHHHhh
Q 022220          229 TVMGVIIFGDGLFLGSLVGAVIIVI--GFYVVMW  260 (300)
Q Consensus       229 ~~l~~~~~ge~~~~~~~~G~~li~~--g~~l~~~  260 (300)
                      -.+|..++++-.=+.+++|..|.+.  |.....+
T Consensus       133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~  166 (198)
T PRK06638        133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR  166 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4457788888888888888888776  5554443

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.23  E-value=5.7  Score=29.24  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHh
Q 022220          201 LTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVM  259 (300)
Q Consensus       201 ~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~  259 (300)
                      +..+|+..+.+.+-+.+..+ +.+.-.++.+.|...-.|......++|..++++|+.++.
T Consensus        65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            44566677888888777665 456788899999986666778888999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.15
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.71
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.42
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.37

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.15  E-value=4.3e-11  Score=92.39  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhcc
Q 022220          192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWGK  262 (300)
Q Consensus       192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~~  262 (300)
                      .+++++++++|.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45677889999999999999999999998 899999999999999999999999999999999999987543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.71  E-value=3.4e-08  Score=73.46  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHhhc
Q 022220          192 YSAVIGAAFLTTLLLWCLMRAGPLYVSMF-KPLAILFSTVMGVIIFGDGLFLGSLVGAVIIVIGFYVVMWG  261 (300)
Q Consensus       192 ~~g~~~~~~~~~~~~~al~~~~a~~~s~~-~~~~pv~a~~l~~~~~ge~~~~~~~~G~~li~~g~~l~~~~  261 (300)
                      ..++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|+.|+.+....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35566788999999999999999999888 89999999999999999999999999999999999988653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.42  E-value=7.4e-07  Score=66.12  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             HHHHHH-HHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220           20 LLSLIS-CSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF   93 (300)
Q Consensus        20 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~   93 (300)
                      ..+.+. .+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..      +++|+.+.++|+.++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            344444 9999999999999999999888 79999999999999999999999      99999999999998843

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.37  E-value=4.9e-07  Score=69.59  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             HHHHHH-HHHHHHHHHhccccchhhHHHH-hhhhHHHHHHHHHHHhhhccccccccccchhhhhHhhhhhhhhhhh
Q 022220           20 LLSLIS-CSSDFSSYIGLQYSSPTLNTAM-LNLIPAFTFILAIIFRMEKLKWRSKSSQAKSLGTIVSIAGAFVVTF   93 (300)
Q Consensus        20 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ila~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~ll~~   93 (300)
                      ..+++. ++++++++.++++.|++.+..+ .++.|+++.++++++++|+++..      +++|+.+.++|+.++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            445555 9999999999999999999888 89999999999999999999999      99999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00