Citrus Sinensis ID: 022233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MEACHGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEccccccccccccccccccEEEEEcccccccHHHHHHHHccccEEEEEcccccccHHHHHcccccEEEEEEcccccHHcHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHHccccEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccccEEEEEccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccEEEEEEccHHHHHHHHHHHHcccEEEEEcccccHHHHHHccccHHHHHHHccEEEEEccccHHHcccccHHHHHHHcccEEEEEccccccccHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
meachghgkekesqdlprvllfkpppdfhlfgdecfssnkfKFLKawesplpldqFLKTHAQSVEAILssggapvtaeTLRLMPAVRLVMTtsaglnhvdiAECRrrgitvanagnvfsedVADLAVGLLIDLLRNISASDRFVKQWlrprqaaegdcyslgigsklggkrvgIVGLGSIGSLVAKRLDafgcsisynsrtkkpsvsypfysnvcelaaNCDILIICCGLTAETHHMINKQVLSalgkegvvinigrgpiideQELVRCLVQGEikgagldvfenepdvpkelXXXXXXX
Flexible Loop (DISEMBL)
meachghgkekesqdlpRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAIlssggapvtAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAnagnvfsedVADLAVGLLIDLLRNISASDRFVKQWlrprqaaegdCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIsynsrtkkpsvsyPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKgagldvfenepdvpkelXXXXXXX
Low Complexity Region (SEG)
MEACHGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELxxxxxxx
Disordered region (IsUnstruct)
******************VLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVF*****************
Disordered Region (DISOPRED)
*******************LLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL*******
Disordered Region (DISEMBL)
**************DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX
Disordered Region (DISPRO)
*************QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP*ELXXXXX**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEACHGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.906	0.842	0.531	8e-79
Q9CA90	313	Glyoxylate/hydroxypyruvat	no	no	0.82	0.785	0.448	3e-56
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.823	0.739	0.332	6e-36
Q8U3Y2	336	Glyoxylate reductase OS=P	no	no	0.796	0.711	0.334	3e-35
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.7	0.619	0.364	2e-34
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.77	0.693	0.325	1e-32
B2VCD1	321	Glyoxylate/hydroxypyruvat	yes	no	0.86	0.803	0.338	4e-32
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.836	0.758	0.346	2e-31
Q1CD80	326	Glyoxylate/hydroxypyruvat	no	no	0.86	0.791	0.323	3e-31
Q663W4	326	Glyoxylate/hydroxypyruvat	no	no	0.86	0.791	0.323	3e-31

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  293 bits (751), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 151/284 (53%), Positives = 198/284 (69%), Gaps = 12/284 (4%)

Query: 12  ESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSG 71
           ES + P VLL +PP     F DE  +      +    S   L  F   HA S  A + SG
Sbjct: 3   ESSEPPVVLLHRPPS--LTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISG 60

Query: 72  GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLI 131
             PVT E L  +P++++++ TS G++H+D+A C+RRGI + NAGN FS+DVAD AVGLLI
Sbjct: 61  RLPVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLI 120

Query: 132 DLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
            +LR I A+DR+V+   W     A  GD     +GSK+ GKRVGIVGLGSIGS VAKRL+
Sbjct: 121 SVLRRIPAADRYVRSGNW-----AKFGD---FQLGSKVSGKRVGIVGLGSIGSFVAKRLE 172

Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
           +FGC ISYNSR++K S  Y +YS++  LA N D+L++CC LT ETHH++N++V+  LGK+
Sbjct: 173 SFGCVISYNSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKD 232

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           GVVIN+GRG +IDE+E+V+CLV G I GAGLDVFENEP VP+EL
Sbjct: 233 GVVINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQEL 276

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  218 bits (556), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 169/254 (66%), Gaps = 8/254 (3%)

Query: 40  KFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHV 99
           +F  L+ W SP      L+TH  S+ A++ +  A   A+ +  +P + +V + S GL+ +
Sbjct: 23  RFNLLRFWTSP-EKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVGLDKI 81

Query: 100 DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCY 159
           D+ +C+ +GI V N  +V +EDVADLA+GL++ LLR +   DR+V    R  +  +G+  
Sbjct: 82  DLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYV----RSGKWKQGE-- 135

Query: 160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA 219
              + +K  GK VGI+GLG IG+ +AKR +AF C I+Y SRT KP V+Y +Y  V +LA 
Sbjct: 136 -FQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQ 194

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
           N DIL++ C LT +T H++++QV+ ALG +GV+INIGRGP +DEQEL++ L +G + GA 
Sbjct: 195 NSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAA 254

Query: 280 LDVFENEPDVPKEL 293
           LDVFE EP VP+EL
Sbjct: 255 LDVFEQEPHVPEEL 268

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 9/256 (3%)

Query: 44  LKAWESPLPLD-QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIA 102
           ++ WE    +  + L    + V+A+++     + AE     P +++V   + G +++DI 
Sbjct: 25  VEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIE 84

Query: 103 ECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYS 160
           E  + G+ + N  +V +   AD+A  LL+   R +  +D+FV+  +W + R  A      
Sbjct: 85  EATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEW-KKRGVAWHPLMF 143

Query: 161 LGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCEL 217
           LG    + G+ +GIVG G IG  +A+R   FG  I YNSRT+KP V       +  + EL
Sbjct: 144 LG--YDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDEL 201

Query: 218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG 277
               D +++   LT ET+HMIN++ L  +    +++NI RG ++D + LV+ L +G I G
Sbjct: 202 LKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAG 261

Query: 278 AGLDVFENEPDVPKEL 293
           AGLDVFE EP   +EL
Sbjct: 262 AGLDVFEEEPYYHEEL 277

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 133/248 (53%), Gaps = 9/248 (3%)

Query: 51  LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGIT 110
           +P ++ L+   + V+A+++     +  E     P +R+V   + G +++D+ E  RRGI 
Sbjct: 34  IPREKLLE-KVKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIY 92

Query: 111 VANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLG 168
           V N  +V +   AD A  LL+   R++   D+FV+  +W R   A     +   +G +L 
Sbjct: 93  VTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWF---LGYELY 149

Query: 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILI 225
           GK +GIVG G IG  +A+R   F   I Y SRT+K          Y  + E+    D +I
Sbjct: 150 GKTIGIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVI 209

Query: 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
           +   LT ET +MIN++ L  +    +++NI RG ++D + L++ L +G I GAGLDVFE 
Sbjct: 210 LAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEE 269

Query: 286 EPDVPKEL 293
           EP   +EL
Sbjct: 270 EPYYNEEL 277

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 12/222 (5%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           + AE +   P ++++ T S G +H+DI E  +RGI V +   V ++ VA+  VGL++ + 
Sbjct: 59  IDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVT 118

Query: 135 RNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           R I  +D+ ++  QW +P      + Y L  G +L GK +G+VGLG IG   AKRL +F 
Sbjct: 119 RRIVEADKIIRTGQWDKP-----WNPYFLT-GPELKGKTIGLVGLGRIGVATAKRLSSFD 172

Query: 193 CSISYNSRTKKPSVSYPF----YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248
             I Y    ++  V        ++++  L    DI+ I   LT ET+H+IN++ L  + K
Sbjct: 173 VKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKK 232

Query: 249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
              +IN  RGP++D + LV+ L +G I GA LDVFE EP  P
Sbjct: 233 TAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPP 274

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           E  +P +  LK   + V+A+++     + +E     P +R+V   + G +++D+ E  RR
Sbjct: 31  EREIPREVLLK-KVRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRR 89

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V N  +V ++  AD A  LL+   R +  +D F +  +W R   A     +   +G 
Sbjct: 90  GIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWF---LGY 146

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
            + GK +GIVG G IG  VA+R   FG  I Y SR++KP         + ++ +L    D
Sbjct: 147 DVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESD 206

Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
            +++   LT ET +MIN++ L  + K  +++NI RG ++D + L++ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDV 266

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2VCD1|GHRB_ERWT9 Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 17  PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
           P V+L+K  P D     DE     +   L A       D F     +  E IL SGG  V
Sbjct: 3   PSVVLYKSLPEDLRARLDEHCHVTEINGLTAENIAKHEDVF-----RQAEGILGSGG-KV 56

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
            AE LR  P +R+  + S G ++ D+A    RG+ + +   V +E VAD  + L++   R
Sbjct: 57  DAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSAR 116

Query: 136 NISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFG 192
            +      VK  +W        G   S   G  +  K++GI+G+G IG  +A+R    FG
Sbjct: 117 RVVEMAERVKSGEW-------RGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFG 169

Query: 193 CSISYNSRTKKPSVSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQVLSALGKE 249
             I YN+R         F +  C+L    A  D L I   LT +THH+I ++ L+ + + 
Sbjct: 170 MPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRS 229

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++IN GRGP++DEQ L+  L  G +  AGLDVFE EP
Sbjct: 230 AILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEP 267

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 137/260 (52%), Gaps = 9/260 (3%)

Query: 40  KFKFLKAWESP-LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH 98
           KF  ++ W+ P  P    L    + V+A+++     V  E L   P ++++   + G ++
Sbjct: 21  KFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDN 80

Query: 99  VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEG 156
           +DI E  +RGI V N   V ++  ADLA  LL+ + R I  +D FV+  +W   +++  G
Sbjct: 81  IDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEW---KKSEVG 137

Query: 157 DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSN 213
               + +G  L GK +GIVG G IG  +AKR   FG  I Y SRT+KP         Y +
Sbjct: 138 WHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVD 197

Query: 214 VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG 273
              L    D + +   LT ET+HMI ++ L  +    ++IN  RG ++D   L++ L +G
Sbjct: 198 FETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEG 257

Query: 274 EIKGAGLDVFENEPDVPKEL 293
            I GAGLDVFE EP   +EL
Sbjct: 258 WIAGAGLDVFEEEPYYNEEL 277

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q1CD80|GHRB_YERPN Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 17  PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
           P ++L+K  P D H    + F+ N F  L     P  L        Q  E ++ SGG  +
Sbjct: 3   PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPELLAAL-----QQAEGLIGSGGK-I 56

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
             + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R
Sbjct: 57  DQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTAR 116

Query: 136 NISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFG 192
            +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F 
Sbjct: 117 RVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFS 169

Query: 193 CSISYNSRTKKPSVSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQVLSALGKE 249
             + Y SR    +    F +  C L    A  D L I   +T +T+HMI ++ L+ +   
Sbjct: 170 MPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSS 229

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++IN GRGP++DEQ L+  L  G I  AGLDVFE EP
Sbjct: 230 AILINAGRGPVVDEQTLIAALQDGTIHAAGLDVFEQEP 267

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q663W4|GHRB_YERPS Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ghrB PE=3 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 17  PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
           P ++L+K  P D H    + F+ N F  L     P  L        Q  E ++ SGG  +
Sbjct: 3   PSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQPELLAAL-----QQAEGLIGSGGK-I 56

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
             + L+L P +R   T S G ++ D+    +RGI + +   V +E VAD  + L++   R
Sbjct: 57  DQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTAR 116

Query: 136 NISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFG 192
            +      VK  +W    Q + GD +    G  +  K +GI+G+G IG  +A+R    F 
Sbjct: 117 RVVELAERVKAGEW----QESIGDDW---FGVDVHHKTIGILGMGRIGMALAQRAHFGFS 169

Query: 193 CSISYNSRTKKPSVSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQVLSALGKE 249
             + Y SR    +    F +  C L    A  D L I   +T +T+HMI ++ L+ +   
Sbjct: 170 MPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSS 229

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++IN GRGP++DEQ L+  L  G I  AGLDVFE EP
Sbjct: 230 AILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEP 267

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255541386	328	glycerate dehydrogenase, putative [Ricin	0.913	0.835	0.710	1e-112
317106635	331	JHL05D22.12 [Jatropha curcas]	0.926	0.839	0.707	1e-112
317106634	333	JHL05D22.11 [Jatropha curcas]	0.943	0.849	0.648	1e-105
224063945	335	predicted protein [Populus trichocarpa]	0.94	0.841	0.641	1e-102
224063943	291	predicted protein [Populus trichocarpa]	0.83	0.855	0.725	1e-101
317106633	333	JHL05D22.10 [Jatropha curcas]	0.913	0.822	0.658	1e-100
224127466	331	predicted protein [Populus trichocarpa]	0.93	0.842	0.672	1e-100
255541390	333	glycerate dehydrogenase, putative [Ricin	0.943	0.849	0.635	1e-99
224127470	339	predicted protein [Populus trichocarpa]	0.93	0.823	0.663	9e-97
359489392	341	PREDICTED: glyoxylate reductase isoform	0.91	0.800	0.646	4e-95

>gi|255541386|ref|XP_002511757.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548937|gb|EEF50426.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/280 (71%), Positives = 238/280 (85%), Gaps = 6/280 (2%)

Query: 14  QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGA 73
           +  P+VLLF  PP F + G+E F+S KF++LKA+ESPLPL QFL  HAQSV+AILSSGGA
Sbjct: 8   ESFPKVLLFIKPPAFTVIGEESFTSTKFRYLKAYESPLPLHQFLAQHAQSVQAILSSGGA 67

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
           PVTA+ LR +P+VR+++TTSAGLN +D+ ECRRRGI++ANAG+V+S DVADLA+GLLID+
Sbjct: 68  PVTADILRFLPSVRVIVTTSAGLNQIDLPECRRRGISIANAGDVYSADVADLAIGLLIDV 127

Query: 134 LRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
           LRNISASDR+VKQ L    +++GD Y LG   KL GKR+GIVGLGSIG  VAKRLDAFGC
Sbjct: 128 LRNISASDRYVKQGL---WSSKGD-YPLGF--KLSGKRIGIVGLGSIGYEVAKRLDAFGC 181

Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI 253
            ISYNSR +K  VSYPFY NVCELAANCD L+ICCGLT +T HMIN+QV SALGK GVV+
Sbjct: 182 YISYNSRKQKFYVSYPFYPNVCELAANCDALVICCGLTDQTFHMINEQVFSALGKNGVVV 241

Query: 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           NIGRGPIIDE+EL+RCLV+GEI GAGLDVFENEP++P+E 
Sbjct: 242 NIGRGPIIDEKELIRCLVEGEIAGAGLDVFENEPNIPQEF 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106635|dbj|BAJ53141.1| JHL05D22.12 [Jatropha curcas]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/284 (70%), Positives = 236/284 (83%), Gaps = 6/284 (2%)

Query: 10  EKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILS 69
           ++  +DLP+VLL K PP F  F  E F+S KF++LKA+ESPLPL QFL  HAQSV+A+L+
Sbjct: 7   QESPEDLPKVLLLKKPPSFQFFEGESFTSTKFQYLKAYESPLPLHQFLAAHAQSVQAVLA 66

Query: 70  SGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGL 129
           SGGA + A+ L+L+PAVR+V+TTSAGLN +DI ECRRRGI +ANAG+V+S DVADLAVGL
Sbjct: 67  SGGASINADILQLLPAVRVVVTTSAGLNQIDIPECRRRGIAIANAGDVYSADVADLAVGL 126

Query: 130 LIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
           LID+LR ISASDR+V+Q L    A +GD Y LG  +KL GKR GIVGLG IG  VAKRL+
Sbjct: 127 LIDVLRKISASDRYVRQGL---WATKGD-YPLG--AKLSGKRAGIVGLGRIGYEVAKRLE 180

Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
           AFGC ISYNSR KKP+VSYPFY NV ELAANCD LIICCGLT +T HMINK+VLSALGK+
Sbjct: 181 AFGCYISYNSRKKKPNVSYPFYQNVSELAANCDALIICCGLTKQTFHMINKEVLSALGKK 240

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           GV++NIGRG IIDE+E+VRCLV GEI GAGLDVFENEPDVPKE 
Sbjct: 241 GVIVNIGRGAIIDEKEMVRCLVAGEIAGAGLDVFENEPDVPKEF 284

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106634|dbj|BAJ53140.1| JHL05D22.11 [Jatropha curcas]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/293 (64%), Positives = 240/293 (81%), Gaps = 10/293 (3%)

Query: 3   ACHGHGKEKESQD--LPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTH 60
           ACH        Q+  LP+VL+ +PPP F    D+   S KF+FLKAWESPLPL+QFL +H
Sbjct: 2   ACHTLQNHDHQQENLLPQVLVLEPPPLFKFHEDQL--SQKFRFLKAWESPLPLNQFLISH 59

Query: 61  AQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSE 120
           A S++ +LSSG  PVTA+TLRL+P++R+++TTSAGLNH+D+  CR RGI +A+AG+V+SE
Sbjct: 60  ASSIQVLLSSGTCPVTADTLRLLPSLRVLVTTSAGLNHIDLQACRERGIPIASAGSVYSE 119

Query: 121 DVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSI 180
           DVAD+AVGLLID++R ISASDR+V+Q   P    +GD     +GSKL G++VGIVGLG+I
Sbjct: 120 DVADIAVGLLIDVIRKISASDRYVRQDSWP---IKGDS---PLGSKLRGRQVGIVGLGNI 173

Query: 181 GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240
           G  VAKRL+AFGC+I YNSR KKPSV YP+YSNVCELAANC++LIICCGL+ +THH+INK
Sbjct: 174 GLEVAKRLEAFGCNILYNSRKKKPSVIYPYYSNVCELAANCNVLIICCGLSKQTHHLINK 233

Query: 241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           +VLS LGK+GV+IN+GRG IIDEQE+V+CL+QG I GAGLDVFENEP+VPKEL
Sbjct: 234 EVLSELGKDGVIINVGRGAIIDEQEMVQCLMQGTIAGAGLDVFENEPNVPKEL 286

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063945|ref|XP_002301314.1| predicted protein [Populus trichocarpa] gi|222843040|gb|EEE80587.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 231/293 (78%), Gaps = 11/293 (3%)

Query: 4   CHGHGKEKESQDL---PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTH 60
           C+G+ +E   Q+L   P+VL+ +PPP F    D+   S KF FLKAW+SPLPLDQFL TH
Sbjct: 3   CNGYHQENHDQNLFPKPKVLVLEPPPVFKYHEDKL--SQKFHFLKAWDSPLPLDQFLTTH 60

Query: 61  AQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSE 120
           A SV+AILS G  PVT  T+RL+P++ L++TTS+GLN +D+ ECRRRG++VA AG++FS 
Sbjct: 61  AHSVQAILSHGTCPVTTSTIRLLPSLGLIVTTSSGLNQIDLQECRRRGVSVAYAGSLFSA 120

Query: 121 DVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSI 180
           DVAD+AVGLLID LR ISA +R+V Q L    A  GD     +GSKLGG++VGIVGLGSI
Sbjct: 121 DVADIAVGLLIDALRKISAGNRYVTQGL---WANNGD---FSLGSKLGGRKVGIVGLGSI 174

Query: 181 GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK 240
           G  V KRL+ FGC+I Y+SR KK SVSYP+YSNVCELAANC++LIICC L  +T HMINK
Sbjct: 175 GLEVGKRLEPFGCNILYSSRNKKSSVSYPYYSNVCELAANCEVLIICCELNDQTRHMINK 234

Query: 241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           +VL ALGK+G++IN+GRG IIDEQE+VRCL+QGEI GAGLDVFENEP VP EL
Sbjct: 235 EVLLALGKKGLIINVGRGAIIDEQEMVRCLMQGEIAGAGLDVFENEPHVPSEL 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063943|ref|XP_002301313.1| predicted protein [Populus trichocarpa] gi|222843039|gb|EEE80586.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/255 (72%), Positives = 217/255 (85%), Gaps = 6/255 (2%)

Query: 39  NKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH 98
           NKF+FLK ++S LPLDQFL TH+ S++AILSSGGAPV A+ L+L+P V +V+TTSAGLN 
Sbjct: 1   NKFQFLKTYDSQLPLDQFLSTHSHSIKAILSSGGAPVNADILQLLPEVGVVVTTSAGLNQ 60

Query: 99  VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDC 158
           +DI ECRRRGI +ANAG V+S DVAD+AVGLLID+LR +SASDR+V+Q L    AA+G+ 
Sbjct: 61  IDIPECRRRGIKIANAGYVYSADVADMAVGLLIDVLRKVSASDRYVRQGL---WAAKGN- 116

Query: 159 YSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELA 218
           Y LG  SKL GKR GIVGLG+IG  VAKRL+AFGC +SYNSR KKP+VSYPFY +VCELA
Sbjct: 117 YPLG--SKLSGKRAGIVGLGNIGYEVAKRLEAFGCFVSYNSRKKKPNVSYPFYHDVCELA 174

Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
           ANCD LIICCGL+ ET HMINKQVLSALGKEGV++NIGRG IIDE+E+VRCL+QGEI GA
Sbjct: 175 ANCDALIICCGLSDETRHMINKQVLSALGKEGVIVNIGRGAIIDEKEMVRCLMQGEIAGA 234

Query: 279 GLDVFENEPDVPKEL 293
           GLDVFE EP VPKE 
Sbjct: 235 GLDVFETEPSVPKEF 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106633|dbj|BAJ53139.1| JHL05D22.10 [Jatropha curcas]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/284 (65%), Positives = 227/284 (79%), Gaps = 10/284 (3%)

Query: 12  ESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSG 71
           +SQDLP+VLL KPPP   + G++ F SN+++ LKAWESPLPL Q L  HA S++AIL SG
Sbjct: 11  QSQDLPQVLLLKPPPVVTVLGEDQFLSNRYQLLKAWESPLPLHQLLTKHANSIQAILCSG 70

Query: 72  GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLI 131
            +PVT + L+ +P+VRLV+T SAG+NH+D+  CRRRGI+V NAG VFS+  AD AVGL  
Sbjct: 71  DSPVTDDLLQRLPSVRLVVTASAGINHIDLIACRRRGISVTNAGIVFSDGGADAAVGLYF 130

Query: 132 DLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
           D+LR ISA+DR+V+Q  W++     +GD Y L   SK+GGKRVGIVGLGSIGS VAKRL+
Sbjct: 131 DVLRKISAADRYVRQGLWVK-----KGD-YPLA--SKIGGKRVGIVGLGSIGSEVAKRLE 182

Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
           AFGC ISYNSR KK    YPFYS+VCELAAN D LIICC LT +T HMINK+VLSALGKE
Sbjct: 183 AFGCIISYNSRKKKNFAPYPFYSSVCELAANSDALIICCALTDQTQHMINKEVLSALGKE 242

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           GV++NIGRG I+DE+ELVR L++G+I GAGLDVFENEP VPKEL
Sbjct: 243 GVIVNIGRGAIVDEKELVRFLMEGKIAGAGLDVFENEPHVPKEL 286

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127466|ref|XP_002320081.1| predicted protein [Populus trichocarpa] gi|222860854|gb|EEE98396.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/290 (67%), Positives = 233/290 (80%), Gaps = 11/290 (3%)

Query: 4   CHGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQS 63
           CH     K  QD P+VL+ KP       G+   +SNKF FLKA+ES LPL QFL TH+ S
Sbjct: 7   CH-----KAQQDFPKVLILKPISFLAHVGERHVASNKFTFLKAYESSLPLHQFLSTHSPS 61

Query: 64  VEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVA 123
           ++AILSS G P+TA+ L+L+P V +V+TTS GLN VD+ ECRRRGI VANAG+VFS+DVA
Sbjct: 62  IKAILSSVGTPITADILQLLPEVGVVVTTSVGLNQVDLPECRRRGIKVANAGSVFSDDVA 121

Query: 124 DLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSL 183
           D AVGLLID+LR +SASD +V++ L    A +GD Y LG  SKLGGKR+GIVGLG+IG  
Sbjct: 122 DFAVGLLIDVLRKVSASDGYVRKGL---WATKGD-YPLG--SKLGGKRIGIVGLGNIGFA 175

Query: 184 VAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243
           VAKRL+AFGCSISYNSR +KP VSYPFY +VCELAANCD+L+ICC LT +T HMINK+VL
Sbjct: 176 VAKRLEAFGCSISYNSRKRKPHVSYPFYESVCELAANCDVLVICCELTDQTRHMINKEVL 235

Query: 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           SALGKEGV++NIGRG II+E+E+V+CLVQGEI GAGLDVFENEPDVP EL
Sbjct: 236 SALGKEGVIVNIGRGAIINEKEMVQCLVQGEIAGAGLDVFENEPDVPVEL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541390|ref|XP_002511759.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548939|gb|EEF50428.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/291 (63%), Positives = 223/291 (76%), Gaps = 8/291 (2%)

Query: 3   ACHGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQ 62
           A H    ++    LP VL+ +  P F     E   S KF FLKAWES LPL QFL  HA 
Sbjct: 2   ANHPQNYQQPQSLLPEVLVLERSPVFKF--HEHRLSQKFHFLKAWESQLPLHQFLAAHAY 59

Query: 63  SVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDV 122
           SV+ +LSSG  PVTA  +RL+P++RL++TTSAGLNH+D+ ECRR+GI +A AG+++SEDV
Sbjct: 60  SVQVLLSSGRDPVTANNIRLLPSLRLIVTTSAGLNHIDLQECRRQGIAIATAGSLYSEDV 119

Query: 123 ADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
           ADL VGL ID+LR ISASD++V+Q   P    +GD     +G KL G++VGIVGLGSIG 
Sbjct: 120 ADLTVGLFIDVLRKISASDQYVRQGSWP---TKGD---FPLGFKLRGRQVGIVGLGSIGL 173

Query: 183 LVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
            VAKR++AFGC I YNSR KKPSV YP+YSNVCELAANCD+LIICCGLT +T HMINK+V
Sbjct: 174 EVAKRVEAFGCKIMYNSRNKKPSVPYPYYSNVCELAANCDVLIICCGLTDQTRHMINKEV 233

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             ALGKEGV++N+GRG IIDEQE+V+ LVQGEI GAGLDVFENEP VPKEL
Sbjct: 234 FEALGKEGVIVNVGRGVIIDEQEMVQRLVQGEIAGAGLDVFENEPHVPKEL 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127470|ref|XP_002320082.1| predicted protein [Populus trichocarpa] gi|222860855|gb|EEE98397.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 189/285 (66%), Positives = 227/285 (79%), Gaps = 6/285 (2%)

Query: 9   KEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAIL 68
           +  + QDLP+VLL KPPP   + G++ F S K++FLKAWESPLPL QFL  HA S++AIL
Sbjct: 14  QNHKPQDLPQVLLLKPPPVLSVIGEQPFLSKKYQFLKAWESPLPLLQFLTAHADSIQAIL 73

Query: 69  SSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVG 128
            SG APVT + L+L+P+VRLV+T SAG NH+D+  C RRGI+V NAGNVFS+D AD AVG
Sbjct: 74  CSGAAPVTDDLLQLLPSVRLVVTASAGTNHIDLEACHRRGISVTNAGNVFSDDGADAAVG 133

Query: 129 LLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL 188
           LLID+LR I+ASDR+V+Q L      +GD Y LG  SKL GKRVGIVGLG IG  +AKRL
Sbjct: 134 LLIDVLRKITASDRYVRQGL---WVNKGD-YPLG--SKLRGKRVGIVGLGGIGLEIAKRL 187

Query: 189 DAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248
           +AFGC++ YNSR KK  +SYPFYS+V +LAAN D LIICC LT +T HMI+K V SALGK
Sbjct: 188 EAFGCNVLYNSRKKKAHLSYPFYSDVRQLAANSDALIICCALTNQTRHMIDKDVFSALGK 247

Query: 249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           EGV++NIGRG I+DE+E+VRCLV GEI GAGLDVFENEPDVPKEL
Sbjct: 248 EGVIVNIGRGAIVDEKEMVRCLVHGEIAGAGLDVFENEPDVPKEL 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489392|ref|XP_003633919.1| PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 183/283 (64%), Positives = 221/283 (78%), Gaps = 10/283 (3%)

Query: 12  ESQDLPRVLLFKPPPDFHLFGDECFS-SNKFKFLKAWESPLPLDQFLKTHAQSVEAILSS 70
           E + LP++L+ KPP    LF D  +  S KF+ LKAWESPLP   FL THA SV+A++SS
Sbjct: 21  EEEALPQLLILKPP---SLFSDFQYKFSPKFQLLKAWESPLPTTLFLTTHAHSVKAVVSS 77

Query: 71  GGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLL 130
             +P+T++ LR +P+++LV+ T+ GLN +D+ ECRRRGI++ANAG + SED AD+ VGL 
Sbjct: 78  SSSPITSDILRHLPSLQLVVATTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLF 137

Query: 131 IDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDA 190
           ID+L+ ISA DRFV+  L P Q          +GSKLGGKRVGIVGLGSIG  VAKRL+A
Sbjct: 138 IDVLKKISAGDRFVRSGLWPIQK------DFPLGSKLGGKRVGIVGLGSIGLEVAKRLEA 191

Query: 191 FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           FGC I YNSR KK ++SYPFYSNVCELAAN + LIICC LT ET HMINK+V+ ALGKEG
Sbjct: 192 FGCIILYNSRRKKANISYPFYSNVCELAANSNALIICCALTDETRHMINKEVMKALGKEG 251

Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           V+INIGRG IIDE+ELV+CLVQGEI GAGLDVFENEPDVPKEL
Sbjct: 252 VIINIGRGAIIDEKELVQCLVQGEIGGAGLDVFENEPDVPKEL 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.916	0.813	0.620	6.9e-86
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.913	0.848	0.531	2.2e-73
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.82	0.785	0.448	2.2e-57
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.783	0.755	0.315	9.8e-32
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.783	0.755	0.315	9.8e-32
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.8	0.743	0.329	1.4e-30
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.67	0.612	0.367	1.8e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.676	0.618	0.347	1.8e-30
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.793	0.750	0.332	1.8e-30
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.743	0.712	0.337	1e-29

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 175/282 (62%), Positives = 219/282 (77%)

Query:    13 SQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGG 72
             ++ LPRVL+ K P    + GD   +S KF+ LKA+ESPLPL +FL  H+ S+ AI++   
Sbjct:    18 TEKLPRVLIVKRPDAMAVLGDGFVASTKFEILKAFESPLPLPEFLAYHSDSISAIIAPVA 77

Query:    73 APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
             APVTA+ +R++P +RLV+TTSAG++HVD+ ECRRRGI+VANAG+ FSEDVAD AVGLLID
Sbjct:    78 APVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLID 137

Query:   133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
             + R ISA++RFVKQ   P    +GD Y LG  SKLG KR+GIVGLGSIGS VA RLDAFG
Sbjct:   138 VFRRISAANRFVKQRFWP---LKGD-YPLG--SKLGRKRIGIVGLGSIGSKVATRLDAFG 191

Query:   193 CSISYNSRTKKP-SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
             C ISY+SR +KP  V Y +Y ++ E+AAN D LIICC L  +T  +INK VLSALGK GV
Sbjct:   192 CQISYSSRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALGKRGV 251

Query:   252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             ++N+ RG IIDE+E+VRCL +GEI GAGLDVFE+EP+VPKEL
Sbjct:   252 IVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKEL 293

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 150/282 (53%), Positives = 197/282 (69%)

Query:    12 ESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSG 71
             ES + P VLL +PP     F DE  +      +    S   L  F   HA S  A + SG
Sbjct:     3 ESSEPPVVLLHRPPS--LTFMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISG 60

Query:    72 GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLI 131
               PVT E L  +P++++++ TS G++H+D+A C+RRGI + NAGN FS+DVAD AVGLLI
Sbjct:    61 RLPVTDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLI 120

Query:   132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAF 191
              +LR I A+DR+V+       A  GD     +GSK+ GKRVGIVGLGSIGS VAKRL++F
Sbjct:   121 SVLRRIPAADRYVRSG---NWAKFGD---FQLGSKVSGKRVGIVGLGSIGSFVAKRLESF 174

Query:   192 GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
             GC ISYNSR++K S  Y +YS++  LA N D+L++CC LT ETHH++N++V+  LGK+GV
Sbjct:   175 GCVISYNSRSQKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGV 234

Query:   252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             VIN+GRG +IDE+E+V+CLV G I GAGLDVFENEP VP+EL
Sbjct:   235 VINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEPAVPQEL 276

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 114/254 (44%), Positives = 169/254 (66%)

Query:    40 KFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHV 99
             +F  L+ W SP      L+TH  S+ A++ +  A   A+ +  +P + +V + S GL+ +
Sbjct:    23 RFNLLRFWTSP-EKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVGLDKI 81

Query:   100 DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCY 159
             D+ +C+ +GI V N  +V +EDVADLA+GL++ LLR +   DR+V    R  +  +G+  
Sbjct:    82 DLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYV----RSGKWKQGE-- 135

Query:   160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA 219
                + +K  GK VGI+GLG IG+ +AKR +AF C I+Y SRT KP V+Y +Y  V +LA 
Sbjct:   136 -FQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQ 194

Query:   220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
             N DIL++ C LT +T H++++QV+ ALG +GV+INIGRGP +DEQEL++ L +G + GA 
Sbjct:   195 NSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAA 254

Query:   280 LDVFENEPDVPKEL 293
             LDVFE EP VP+EL
Sbjct:   255 LDVFEQEPHVPEEL 268

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 84/266 (31%), Positives = 141/266 (53%)

Query:    50 PLPLDQFLKTHAQSVEAILSSGGAPVTAET---------------LRLMP-AVRLVMTTS 93
             PLP  + LK + +S+E  L  G   V A+                +  +P +++L+    
Sbjct:    10 PLPFPE-LKANGESIETRLFEGDFSVFAQAQVICSTSLDALDHNFITQLPESIKLIANIG 68

Query:    94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPR 151
              G +++D+A    +GI V N   V +ED ADLA  L++   R ++A+++F++  QW    
Sbjct:    69 VGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANEKFLRNGQWSATN 127

Query:   152 QAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK----PSVS 207
                   C    +G  + G ++GI+G G IG  VA+R  AF   I Y+   +K     S+ 
Sbjct:   128 PIG---C----LGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLE 180

Query:   208 YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
               ++ N+ ++ A  DI+ I C L   THH+IN   ++ +  + +++N GRGP+IDE  LV
Sbjct:   181 AVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALV 240

Query:   268 RCLVQGEIKGAGLDVFENEPDVPKEL 293
               + +G +  AGLDVFE+EP++  +L
Sbjct:   241 GAMKKGHLFAAGLDVFEHEPEIHDQL 266

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 84/266 (31%), Positives = 141/266 (53%)

Query:    50 PLPLDQFLKTHAQSVEAILSSGGAPVTAET---------------LRLMP-AVRLVMTTS 93
             PLP  + LK + +S+E  L  G   V A+                +  +P +++L+    
Sbjct:    10 PLPFPE-LKANGESIETRLFEGDFSVFAQAQVICSTSLDALDHNFITQLPESIKLIANIG 68

Query:    94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPR 151
              G +++D+A    +GI V N   V +ED ADLA  L++   R ++A+++F++  QW    
Sbjct:    69 VGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANEKFLRNGQWSATN 127

Query:   152 QAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK----PSVS 207
                   C    +G  + G ++GI+G G IG  VA+R  AF   I Y+   +K     S+ 
Sbjct:   128 PIG---C----LGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLE 180

Query:   208 YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
               ++ N+ ++ A  DI+ I C L   THH+IN   ++ +  + +++N GRGP+IDE  LV
Sbjct:   181 AVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALV 240

Query:   268 RCLVQGEIKGAGLDVFENEPDVPKEL 293
               + +G +  AGLDVFE+EP++  +L
Sbjct:   241 GAMKKGHLFAAGLDVFEHEPEIHDQL 266

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 82/249 (32%), Positives = 120/249 (48%)

Query:    48 ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
             E  + LD+ L    +  +A+LS     VT E +   P++++V    AG +++D      +
Sbjct:    29 EELISLDE-LTERVKDKDALLSLLSTKVTKEVIDAAPSLKIVANYGAGYDNIDYTYAGEK 87

Query:   108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKL 167
             GI V N   V +E  A+L   LL+   R I   D   +          G      +G ++
Sbjct:    88 GIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRT-----TGFNGWAPLFFLGREV 142

Query:   168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDIL 224
              GK +GI+GLG IG  VAKR  AFG +I Y    +KP         Y  + EL    D +
Sbjct:   143 HGKTIGIIGLGEIGKAVAKRAKAFGMNILYTGPNRKPEAESELEATYVTLEELLQTADFI 202

Query:   225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284
              I C    + HHMI+++    + K   ++N  RGPI+ E  L   L   EI+GA LDVFE
Sbjct:   203 TINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKTNEIEGAALDVFE 262

Query:   285 NEPDVPKEL 293
              EP + +EL
Sbjct:   263 FEPKITEEL 271

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 79/215 (36%), Positives = 125/215 (58%)

Query:    86 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
             +RL+    AG++++D+A   +RGITV N   V ++D AD+A+ L++       A  R + 
Sbjct:    72 LRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALIL-------AVPRRMH 124

Query:   146 QWLRPRQAAEGDCYSLG--IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK- 202
             + ++  +A + D ++    +G +L GKR+GI+G+G IG  VA+R  AFG  I Y++R   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFGMQIHYHNRKPV 184

Query:   203 ----KPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRG 258
                 + S+   ++ ++ ++ A  DI+ I C  T  T H+IN + L  +  E  +IN  RG
Sbjct:   185 SSRIEESLEATYWDSLDQMLARMDIVSINCPHTPATFHLINARRLGLMKPEAYIINTARG 244

Query:   259 PIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
              +IDE  L R +  G+I GAGLDVFE EP V  EL
Sbjct:   245 EVIDEAALARAIRAGKIAGAGLDVFEREPAVNPEL 279

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 74/213 (34%), Positives = 122/213 (57%)

Query:    86 VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
             +RL+    AG++H+D+A  R+RGI V+N   V ++D AD+ + L++ + R I      V 
Sbjct:    72 MRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIPEG-LAVM 130

Query:   146 QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-KP 204
             Q    +    G   +  +G ++GG+R+GI+G+G IG  VA+R  AFG  I Y++R + +P
Sbjct:   131 Q----KNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARRASAFGMQIHYHNRRRLRP 186

Query:   205 SVS----YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI 260
              V       ++ ++ ++ A  D++ + C  T  T H++N + L  +   GV++N  RG +
Sbjct:   187 EVEDALEATWWDSLDQMIARMDVISVNCPSTPSTFHLMNARRLKLMKPTGVIVNTSRGEV 246

Query:   261 IDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             IDE  L R +  GEI GAGLDV+E+   V   L
Sbjct:   247 IDENALTRMIRTGEIAGAGLDVYEHGTQVNPRL 279

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 83/250 (33%), Positives = 132/250 (52%)

Query:    49 SPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRR 106
             +PL   + L+   +  + ++ + G   +A+    +P    RL+     G NH+ +A  R 
Sbjct:    30 TPLSEAEMLRA-LREFDIVMPTLGDMFSADVFAQVPEPRCRLLANFGVGYNHIAVAAARA 88

Query:   107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK 166
              G+ V N     ++  AD+A+ LL+   R     +R V+       A EG   +  +G  
Sbjct:    89 AGVAVTNTPGAVTDATADIAMTLLLMTARRAGEGERLVRSG-----AWEGWHPTQMLGHH 143

Query:   167 LGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSVSYPF--YSNVCELAANCDI 223
             + GK VGIVGLG IG  +A+R    FG  +SY +R+ K  V +P     ++  LA   D 
Sbjct:   144 VTGKHVGIVGLGRIGQAIARRCHFGFGMQVSYVARSDK-DVDFPVSRMESLAALAGAVDF 202

Query:   224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVF 283
             L+I      ET H+I+ Q+L+A+   G+++NI RG ++DE  L+  L + +I GAGLDV+
Sbjct:   203 LVIAVPGGGETRHLIDAQILAAMKPSGILVNIARGEVVDEAALIAALSERQIAGAGLDVY 262

Query:   284 ENEPDVPKEL 293
             E EP VP+ L
Sbjct:   263 EFEPKVPEAL 272

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 78/231 (33%), Positives = 121/231 (52%)

Query:    64 VEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVA 123
             + A+   G        + L+P + ++     G + +D+A    RGITV N   V ++DVA
Sbjct:    44 ISAVAYMGHTAFGGAEMDLLPGLGVIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVA 103

Query:   124 DLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSL 183
             DLAV +L+   R +     +V++          +  +  +  K  G   G+VGLG IG  
Sbjct:   104 DLAVTMLLMQCRRMEQGGAWVRE-------GHWETANFPLNRKASGGVAGVVGLGRIGRE 156

Query:   184 VAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL 243
             +A RL AF   I Y +R++K +  + ++++   LA   D L++      ET   I+++V+
Sbjct:   157 IADRLAAFKMDIHYFARSEKDTPGWTYHADPVSLAKAVDFLVVALVGGPETEKFISREVI 216

Query:   244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV-PKEL 293
              ALG  GVV+NI RG  IDE  L+  L +G I GA LDVF NEP + P+ L
Sbjct:   217 EALGPRGVVVNISRGSTIDETALLDALERGRIAGAALDVFLNEPTIDPRFL 267

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2VCD1	GHRB_ERWT9	1, ., 1, ., 1, ., 8, 1	0.3381	0.86	0.8037	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-125
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	8e-85
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	3e-76
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	8e-74
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-64
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-64
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	1e-62
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	5e-62
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-60
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	3e-60
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-53
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-53
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	4e-52
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	6e-51
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	8e-50
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-49
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	8e-48
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	2e-47
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-46
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-45
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	2e-44
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-44
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	4e-44
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	6e-44
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	8e-44
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	5e-43
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-42
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-42
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	4e-42
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-40
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	4e-40
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	5e-40
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-38
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	4e-38
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-36
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-35
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-34
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-33
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	4e-33
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	8e-33
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	5e-31
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	4e-30
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-29
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-28
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-28
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	7e-27
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-26
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	2e-25
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	7e-25
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-24
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	2e-23
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-23
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	6e-21
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	7e-21
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-17
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-17
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-16
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	8e-16
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	3e-15
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-14
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	6e-14
COG0373	414	COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m	9e-04
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	0.002
PRK13302	271	PRK13302, PRK13302, putative L-aspartate dehydroge	0.003

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  358 bits (921), Expect = e-125
 Identities = 113/279 (40%), Positives = 165/279 (59%), Gaps = 16/279 (5%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVT 76
           P VL   P P   L       +  F   + WE+  P    L  H   + A++++G   ++
Sbjct: 1   PDVLQLGPLPPELL---AELEAR-FTVHRLWEAADP-AALLAEHGGRIRAVVTNGETGLS 55

Query: 77  AETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN 136
           A  +  +PA+ L+ +   G + +D+   R RGI V N   V ++DVADLAVGLL+ +LR 
Sbjct: 56  AALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRR 115

Query: 137 ISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           I A+DRFV+  +W +             +  K+ GKRVGIVGLG IG  +A+RL+AFG  
Sbjct: 116 IPAADRFVRAGRWPKGA---------FPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGME 166

Query: 195 ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVIN 254
           I+Y+ R  KP V Y +Y+++ ELAA  D+L++ C     T H++N +VL ALG +GV++N
Sbjct: 167 IAYHGRRPKPDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVN 226

Query: 255 IGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           + RG ++DE  L+  L +G I GAGLDVFENEP+VP  L
Sbjct: 227 VARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAAL 265

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  257 bits (659), Expect = 8e-85
 Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 14/276 (5%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKF-LKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
             VL  +  P       E     K KF ++ +E  L  D  L    +  +A+++     +
Sbjct: 3   IVVLSTRKLPP------EVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRI 56

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
            AE L  +P ++L+ T SAG ++VD+   + RGITV N     +E VA+ AV L++ L R
Sbjct: 57  DAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALAR 116

Query: 136 NISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSI 195
            I   DR V++         G    L +G  L GK +GI+GLG IG  VA+RL  FG  +
Sbjct: 117 RIHEGDRRVREGNWSL---SGGPDPL-LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKV 172

Query: 196 SYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252
            Y  R+  P         Y ++ EL A  DI+ + C LT ET H+IN + L+ +    ++
Sbjct: 173 LYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAIL 232

Query: 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
           +N  RG ++DEQ L+  L  G+I GAGLDVFENEP 
Sbjct: 233 VNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA 268

Length = 324

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  234 bits (601), Expect = 3e-76
 Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 28/285 (9%)

Query: 17  PRVLLFKPPPDF--HLFGDECFSSNKFKFLKAWES--PLPLDQFLKTHAQSVEAILSSGG 72
           P+VL+ +  P+    L  +          ++ W+   PLP ++ L+  A+  + +L +  
Sbjct: 1   PKVLVTRRLPEEALALLREGFE-------VEVWDEDRPLPREELLE-AAKGADGLLCTLT 52

Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
             + AE L   P ++++   S G +H+D+   + RGI V N  +V ++  ADLA  LL+ 
Sbjct: 53  DKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLA 112

Query: 133 LLRNISASDRFVK--QW--LRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL 188
             R +   DRFV+  +W    P            +G+ L GK +GIVG+G IG  VA+R 
Sbjct: 113 AARRVVEGDRFVRAGEWKGWSPTLL---------LGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 189 DAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245
             FG  I Y++R++KP         Y ++ EL A  D + + C LT ET H+IN + L+ 
Sbjct: 164 KGFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLAL 223

Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
           +    ++IN  RG ++DE  LV  L  G+I GAGLDVFE EP   
Sbjct: 224 MKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPA 268

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  228 bits (583), Expect = 8e-74
 Identities = 97/272 (35%), Positives = 140/272 (51%), Gaps = 15/272 (5%)

Query: 26  PDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA 85
           P F     E   +  F+ + A      L   L+      +A++ S   PVTAE L   P 
Sbjct: 7   PLFPPEALEALEATGFEVIVA---DDLLADELEALLADADALIVSSTTPVTAEVLAKAPK 63

Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
           ++ +    AG++++D+   ++RGITV N     +E VA+ A+GLL+ LLR +  +D  V+
Sbjct: 64  LKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVR 123

Query: 146 Q-WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP 204
           + W                G +L GK VGIVGLG IG  VAKRL AFG  + Y  RT+KP
Sbjct: 124 RGWGWLWAGF--------PGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKP 175

Query: 205 SVSYPFYSNVC---ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII 261
                    V    EL A  D++++   LT ET H+IN++ L+ +    V++N  RG ++
Sbjct: 176 EPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLV 235

Query: 262 DEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           DE  L+R L  G+I GA LDVFE EP      
Sbjct: 236 DEDALLRALKSGKIAGAALDVFEPEPLPADHP 267

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  204 bits (522), Expect = 2e-64
 Identities = 82/230 (35%), Positives = 118/230 (51%), Gaps = 15/230 (6%)

Query: 64  VEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVA 123
            + ++      + AE L   P +RL+     GL+ VD+     RGI VAN     +E VA
Sbjct: 44  ADVLVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVA 103

Query: 124 DLAVGLLIDLLRNISASDRFV--KQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIG 181
           + AV L++ LLR +  +DR +   +W RP      +         L GK VGIVGLG+IG
Sbjct: 104 EHAVMLMLALLRRLPEADRELRAGRWGRPEGRPSRE---------LSGKTVGIVGLGNIG 154

Query: 182 SLVAKRLDAFGCSISYNSRTKKPSVS----YPFYSNVCELAANCDILIICCGLTAETHHM 237
             VA+RL  FG  + Y  R + P          Y  + EL A  D++ +   LT ET H+
Sbjct: 155 RAVARRLRGFGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           I  + L+A+    ++IN  RG ++DE+ L+  L  G + GAGLDVF  EP
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP 264

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  204 bits (520), Expect = 5e-64
 Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 17/230 (7%)

Query: 64  VEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVA 123
            +A++ S   PVT E L   P ++ +    AG++++D+    +RGI V NA    +  VA
Sbjct: 46  ADALIVSV-TPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVA 104

Query: 124 DLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIG 181
           +L + LL+ L R I  +D   ++  W R              G++L GK VGI+GLG IG
Sbjct: 105 ELVLALLLALARRIPDADASQRRGEWDRKAF----------RGTELAGKTVGIIGLGRIG 154

Query: 182 SLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHM 237
             VAKRL AFG  +                     ++ EL A  DIL +   LT ET  +
Sbjct: 155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL 214

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           IN + L+ +    ++IN  RG ++DE  L+  L  G+I GA LDVFE EP
Sbjct: 215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEP 264

Length = 324

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  200 bits (511), Expect = 1e-62
 Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 25/254 (9%)

Query: 55  QFLKTHAQS-VEAILSSGGA-----PVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRR 107
           + LK        AI  + G+     P   E +  +P  ++++    AG + +D+    +R
Sbjct: 39  EALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLPPSLKIIAHAGAGYDQIDVDALTKR 98

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCY---SLGIG 164
           GI V+N      E  AD A+ L++  LRN S ++R  +          G       L + 
Sbjct: 99  GIQVSNTPGAVDEATADTALFLILGALRNFSRAERSAR---------AGKWRGFLDLTLA 149

Query: 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAAN 220
               GK +GI+GLG IG  +A++  AFG  I Y++R++ P         +Y ++ EL A 
Sbjct: 150 HDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALATYYVSLDELLAQ 209

Query: 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAG 279
            D++ + C LTA T H+INK+  + + K+GV+I N  RG +IDE  LV  L  G++  AG
Sbjct: 210 SDVVSLNCPLTAATRHLINKKEFAKM-KDGVIIVNTARGAVIDEDALVDALESGKVASAG 268

Query: 280 LDVFENEPDVPKEL 293
           LDVFENEP+V   L
Sbjct: 269 LDVFENEPEVNPGL 282

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  198 bits (506), Expect = 5e-62
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           L       +A+++    PV  E +     ++++    AG +++D+   + +GI V N   
Sbjct: 37  LLERIADYDALITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPA 96

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176
           V +E  A+L  GL++ L R I+  DR ++   R         + LG   +L GK +GI+G
Sbjct: 97  VSTEPTAELTFGLILALARRIAEGDRLMR---RGGFLGWAPLFFLGH--ELAGKTLGIIG 151

Query: 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYPFYSNVCELAANCDILIICCG 229
           +G IG  VA+R  AFG  I Y +R +           +Y    ++ EL    D + +   
Sbjct: 152 MGRIGQAVARRAKAFGMKILYYNRHRLSEETEKELGATY---VDLDELLKESDFVSLHAP 208

Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
            T ETHH+I+      +     +IN  RGP++DE+ LV  L  GEI GA LDVFE EP+V
Sbjct: 209 YTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEV 268

Query: 290 PKEL 293
             EL
Sbjct: 269 SPEL 272

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  193 bits (494), Expect = 2e-60
 Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 18/236 (7%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           L    +  + +++ G  P+T E L   P ++++     G +++D+   ++RGI V N   
Sbjct: 41  LIELLKDADGVIA-GLDPITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG 99

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGI 174
             S  VA+L +GL++ L R I  +DR V+   W RP            +G++L GK +GI
Sbjct: 100 ANSNSVAELTIGLMLALARQIPQADREVRAGGWDRP------------VGTELYGKTLGI 147

Query: 175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCGLT 231
           +GLG IG  VA+RL  FG  +           +           EL    D + +   LT
Sbjct: 148 IGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLT 207

Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ET H+IN   L+ +    ++IN  RG ++DE+ L   L  G I GA LDVFE EP
Sbjct: 208 PETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEP 263

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  193 bits (494), Expect = 3e-60
 Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 61  AQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSE 120
           A   +A+L    APVTAE +  +P +++++    G+++VD+A    RGI V N  +  +E
Sbjct: 42  AADADALLV-QYAPVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTE 100

Query: 121 DVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSI 180
           +VAD A+ L++ L R +   DR V+           D    G   +L G  +G+VG G I
Sbjct: 101 EVADHALALILALARKLPFLDRAVRA-------GGWDWTVGGPIRRLRGLTLGLVGFGRI 153

Query: 181 GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCGLTAETHHM 237
           G  VAKR  AFG  +          V+      V    EL A  D++ + C LT ET H+
Sbjct: 154 GRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHL 213

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
           I+ + L+ +     ++N  RG ++DE  L R L  G I GA LDV E EP   
Sbjct: 214 IDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPA 266

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  175 bits (447), Expect = 3e-53
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 45  KAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAEC 104
           K+    +  ++ L    +  + +++   APVT + +   P ++L+     G  +VD+   
Sbjct: 28  KSGPEAVEPEEELLEALKDADILIT-HFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAA 86

Query: 105 RRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSL- 161
             RGI V N     +E VA+  VGL++   RNI+ +   +K  +W         D Y+  
Sbjct: 87  TERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEW-------RKDYYNYD 139

Query: 162 GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYSNVC--ELA 218
           G G +L GK VGIVG G+IG  VAKRL AFG  +  Y+       +       V   EL 
Sbjct: 140 GYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELL 199

Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
              D++ +   LT ET  MI  +  + +      IN  R  ++DE  L+  L +G+I GA
Sbjct: 200 KRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGA 259

Query: 279 GLDVFENEP 287
            LDVF  EP
Sbjct: 260 ALDVFPEEP 268

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  175 bits (446), Expect = 5e-53
 Identities = 74/242 (30%), Positives = 110/242 (45%), Gaps = 30/242 (12%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           L       + +L   G P   E L   P +R + +TSAG++ +   E   R + + NA  
Sbjct: 34  LTEELADADVLL---GNPPLPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARG 90

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLGIGSKLGGKR 171
           +F   +A+  +G ++   R +    R+ +      W R     E           L GK 
Sbjct: 91  IFGPPIAEYVLGYMLAFARKL---PRYARNQAERRWQRRGPVRE-----------LAGKT 136

Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC------ELAANCDILI 225
           V IVGLG IG  +A+R  AFG  +    R+ +P+   P    V       EL    D ++
Sbjct: 137 VLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAP--PVVDEVYTPDELDELLPEADYVV 194

Query: 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
               LT ET  + N +  +A+    V+IN+GRG ++DE  L+  L  G I GA LDVFE 
Sbjct: 195 NALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEE 254

Query: 286 EP 287
           EP
Sbjct: 255 EP 256

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  173 bits (440), Expect = 4e-52
 Identities = 83/221 (37%), Positives = 123/221 (55%), Gaps = 11/221 (4%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
           P+  E +     ++++     G++HVD+  C+ RGITV+NA    +E VA+L +GL IDL
Sbjct: 58  PLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDL 117

Query: 134 LRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
           LRNI   D  V      R           IG +L GK VGIVG G+IG  VA+   AFGC
Sbjct: 118 LRNIVPCDAAV------RAGGTKAGL---IGRELAGKTVGIVGTGAIGLRVARLFKAFGC 168

Query: 194 SISYNSRTKKPSVSYPF--YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
            +   SR++K         Y ++ EL A  DI+ +   L  ET  +I K+ L+ + +  +
Sbjct: 169 KVLAYSRSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAI 228

Query: 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           +IN  RGP++D + L   L +G+I GAG+DVF+ EP +P +
Sbjct: 229 LINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPAD 269

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  169 bits (431), Expect = 6e-51
 Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 19/238 (7%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA-- 114
           L       +A++      VTAE +   P ++++     G++++D+     RGI V NA  
Sbjct: 34  LLAIIADADALIVRSATKVTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG 93

Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRV 172
            N  S  VA+  + L++ L RNI  +D  ++   W R             +G +L GK +
Sbjct: 94  ANTIS--VAEHTIALMLALARNIPQADASLRAGKWDR----------KKFMGVELRGKTL 141

Query: 173 GIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCG 229
           GIVGLG IG  VA+R  AFG  +           +      +    EL A  D + +   
Sbjct: 142 GIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGGVELVSLDELLAEADFISLHTP 201

Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           LT ET  +IN + L+ +    ++IN  RG I+DE  L   L  G+I GA LDVFE EP
Sbjct: 202 LTPETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP 259

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  162 bits (413), Expect = 8e-50
 Identities = 62/165 (37%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 127 VGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLV 184
           + LL+ L R I  +DR V+   W               +G +L GK VGI+GLG IG  V
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDA----------LLGRELSGKTVGIIGLGRIGRAV 50

Query: 185 AKRLDAFGCSISYNSRTKKP--SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
           A+RL AFG  +    R  K         Y ++ EL A  D++ +   LT ET H+IN + 
Sbjct: 51  ARRLKAFGMKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAER 110

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           L+ +    ++IN  RG ++DE  L+  L  G I GA LDVFE EP
Sbjct: 111 LALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEP 155

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  165 bits (420), Expect = 3e-49
 Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 7/216 (3%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
            + AE L  +P ++L+   + G N+VD+A  + RGITV N     ++ VA     LL+ L
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLAL 113

Query: 134 LRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAF 191
            R ++  +  VK   W    Q +   C+      +L GK +GI+G G+IG  VA+   AF
Sbjct: 114 ARLVAYHNDVVKAGEW----QKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAF 169

Query: 192 GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
           G  + +  R   P +   + S + EL A  D++ + C LT ET ++IN + L+ +    +
Sbjct: 170 GMKVLFAERKGAPPLREGYVS-LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAI 228

Query: 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +IN  RG ++DEQ L   L  G+I GAGLDV   EP
Sbjct: 229 LINTARGGLVDEQALADALNSGKIAGAGLDVLSQEP 264

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  162 bits (412), Expect = 8e-48
 Identities = 87/251 (34%), Positives = 132/251 (52%), Gaps = 9/251 (3%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           E  +P +  L+   + V+A+++     +  E     P +R+V   + G +++D+ E  RR
Sbjct: 31  EREIPREVLLE-KVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRR 89

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V N   V +E  AD A  LL+   R +  +D FV+  +W R   A     +   +G 
Sbjct: 90  GIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF---LGY 146

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
            + GK +GI+G G IG  VA+R   FG  I Y SRT+KP         Y  + EL    D
Sbjct: 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESD 206

Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
            + +   LT ET+HMIN++ L  +    +++N  RG ++D + LV+ L +G I GAGLDV
Sbjct: 207 FVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDV 266

Query: 283 FENEPDVPKEL 293
           FE EP   +EL
Sbjct: 267 FEEEPYYNEEL 277

Length = 333

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  160 bits (408), Expect = 2e-47
 Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 19/242 (7%)

Query: 61  AQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSE 120
           A+  +A++     PVTAE L   P ++++     G++++D+     RGI V N     +E
Sbjct: 36  AKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTE 95

Query: 121 DVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLG 178
            VA+L VGL++ L R I  +D  V+   W +             IG +L GK +G++G G
Sbjct: 96  SVAELTVGLILALARRIPEADASVRAGDWKK----------GGPIGLELYGKTLGVIGGG 145

Query: 179 SIGSLVAKRLDAFGC----SISYNSRTKKPSVSYPFYSNVCEL---AANCDILIICCGLT 231
            IG + A    A G        Y +  +              L     + D++ +    T
Sbjct: 146 GIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTT 205

Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
            +T H+I  +    L     + N   G +I+E  L   L +G    A   V E  P V  
Sbjct: 206 MKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNS 265

Query: 292 EL 293
            L
Sbjct: 266 PL 267

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  158 bits (402), Expect = 2e-46
 Identities = 78/266 (29%), Positives = 122/266 (45%), Gaps = 23/266 (8%)

Query: 42  KFLKAWESPLPLD----------QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMT 91
           +  K       +D                A+  +AIL++    + AE L   P ++ +  
Sbjct: 14  EIEKEILKAGGVDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPGLKFISL 73

Query: 92  TSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPR 151
            + G +++D+   +  GI V N        VA+  + L++ LLRN    D   K      
Sbjct: 74  RATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKN----- 128

Query: 152 QAAEGDCYSLGIGSK-LGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYP 209
                D    G+  + L  + VG+VG G IG  VA+R   FG   I+Y+           
Sbjct: 129 ----QDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELEDKG 184

Query: 210 F-YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268
             Y ++ EL  N DI+ +   LT E HHMIN++    + K  ++IN  RG ++D + L+ 
Sbjct: 185 VKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIE 244

Query: 269 CLVQGEIKGAGLDVFENE-PDVPKEL 293
            L  G+I GAGLDV E+E PD+ K+L
Sbjct: 245 ALDSGKIFGAGLDVLEDETPDLLKDL 270

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  156 bits (397), Expect = 1e-45
 Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 19/232 (8%)

Query: 64  VEAILSSGGAP-VTAETLRLMPAVRLVM-TTSAGLNHVDIAECRRRGITVANAGNVFSED 121
           VE +++  G P + AE L   P +R V+    +    V       RGI V +A +  +E 
Sbjct: 50  VEVLVTGWGTPPLDAELLARAPRLRAVVHAAGSVRGLVT-DAVWERGILVTSAADANAEP 108

Query: 122 VADLAVGLLIDLLRNISASDRFVKQ---WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLG 178
           VA+  +  ++  LR I       +    W  P +              L G+ VGIVG G
Sbjct: 109 VAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRG---------LYGRTVGIVGFG 159

Query: 179 SIGSLVAKRLDAFGCSISYNSRTKKPS-VSYPFYSNVC--ELAANCDILIICCGLTAETH 235
            IG  V + L  FG  +         +  +      V   EL A  D++ +   LT ET 
Sbjct: 160 RIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARSDVVSLHAPLTPETR 219

Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            MI+ ++L+ +      IN  RG ++DE  L+  L  G +  A LDV + EP
Sbjct: 220 GMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEP 270

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  153 bits (389), Expect = 2e-44
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 18/211 (8%)

Query: 83  MPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNI--SAS 140
           M  ++ +   SAG++++ +   +++GI + N   + S  +A+  VG ++++ + +  +  
Sbjct: 58  MKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYK 117

Query: 141 DRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS---ISY 197
           ++  K+W       E           L GK +  +G GSIG  +AKRL AFG     ++ 
Sbjct: 118 NQKEKKWKMDSSLLE-----------LYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNT 166

Query: 198 NSRTKKP-SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG 256
           + R  +     YP    + E+    DI++    LT ETHH+ ++     + K  + IN+G
Sbjct: 167 SGRDVEYFDKCYPL-EELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVG 225

Query: 257 RGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           RGP +DE  L+  L   +I+GA LDVFE EP
Sbjct: 226 RGPSVDEDALIEALKNKQIRGAALDVFEEEP 256

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  153 bits (388), Expect = 2e-44
 Identities = 90/281 (32%), Positives = 132/281 (46%), Gaps = 26/281 (9%)

Query: 17  PRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
           P V+L+K  P D     +E F+  +   L    SP  ++Q     A++ E +L SG   V
Sbjct: 3   PSVILYKALPDDLLQRLEEHFTVTQVANL----SPETVEQHAAAFAEA-EGLLGSGEK-V 56

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
            A  L  MP +R   T S G ++ D+     R I + +   V +E VAD  + L++   R
Sbjct: 57  DAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTAR 116

Query: 136 NISASDRFVK--QWLRPRQAAEGDCYSLG---IGSKLGGKRVGIVGLGSIGSLVAKRLD- 189
            +      VK  +W            S+G    G+ +  K +GIVG+G IG  +A+R   
Sbjct: 117 RVVEVAERVKAGEWTA----------SIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHF 166

Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQVLSAL 246
            F   I YN+R         F +  C+L       D + I   LT ETHH+   +  + +
Sbjct: 167 GFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKM 226

Query: 247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
               + IN GRGP++DE  L+  L +GEI  AGLDVFE EP
Sbjct: 227 KSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267

Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  152 bits (386), Expect = 4e-44
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 22/231 (9%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           + A+ L   P ++++     G ++ D+  C  RGI V    ++ +E  A+L +GLLI L 
Sbjct: 56  IDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLG 115

Query: 135 RNISASDRFVK----QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDA 190
           R+I A DRFV+       RP+       Y  G    L GK VGI+G+G++G  +A+RL  
Sbjct: 116 RHILAGDRFVRSGKFGGWRPKF------YGTG----LDGKTVGILGMGALGRAIARRLSG 165

Query: 191 FGCSISYNSRTKKPSVSYPF----YSNVCELAANCDILIICCGLTAETHHMINKQVLSAL 246
           FG ++ Y                    + EL  + D L++   LT +T H+IN + L+ +
Sbjct: 166 FGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKM 225

Query: 247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE----PDVPKEL 293
               +++N  RG ++DE  +   L  G + G   DVFE E    PD P+ +
Sbjct: 226 KPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSI 276

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  151 bits (384), Expect = 6e-44
 Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 17/243 (6%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           L    +  + ++      VT E +     ++++     GL+++D+   +++GI V N   
Sbjct: 35  LLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPG 94

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGI 174
             S  VA+L +GL++ L R I  ++R +K   W + +            G +L GK +GI
Sbjct: 95  ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKKKY----------KGIELRGKTLGI 144

Query: 175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCGLT 231
           +G G IG  VAK   A G ++       K   +           EL  N D + +   LT
Sbjct: 145 IGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLT 204

Query: 232 AETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
            ET HMINK+ L  L K+G + IN  RG +IDE+ L+  L  G++ GA LDVFENEP   
Sbjct: 205 PETKHMINKKEL-ELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPG 263

Query: 291 KEL 293
            +L
Sbjct: 264 SKL 266

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  151 bits (384), Expect = 8e-44
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVD---IAEC 104
           E P   D+  +   +  + ++  GG     E L  +  ++L+   SAG++H+    + E 
Sbjct: 25  EVPELPDEAAEEALEDADVLV--GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPE- 81

Query: 105 RRRGITVAN-AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGI 163
              G+ VAN  GN  S  VA+ A+ L++ L + I   D  ++     R    G       
Sbjct: 82  ---GVVVANNHGN--SPAVAEHALALILALAKRIVEYDNDLR-----RGIWHGRAGEEPE 131

Query: 164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----SVSYPFYSNVCELAA 219
             +L GK VGI+G G IG  +A+ L AFG  +   SR+ K            S++ E   
Sbjct: 132 SKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGT-LSDLDEALE 190

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
             D++++   LT +T  +I    L+A+    +++N+GRGP++DE+ L   L +  I GA 
Sbjct: 191 QADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAA 250

Query: 280 LDVFENEPD 288
           +DV+   P 
Sbjct: 251 IDVWWRYPS 259

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  154 bits (391), Expect = 5e-43
 Identities = 82/232 (35%), Positives = 113/232 (48%), Gaps = 41/232 (17%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLI 131
            VTAE L     ++++     G+++VD+    RRGI V NA  GN  S   A+  + L++
Sbjct: 53  KVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTIS--AAEHTIALML 110

Query: 132 DLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
            L RNI  +   +K   W R             +G +L GK +GI+GLG IGS VAKR  
Sbjct: 111 ALARNIPQAHASLKAGKWER----------KKFMGVELYGKTLGIIGLGRIGSEVAKRAK 160

Query: 190 AFGCSISYNSRTKKPSVSY-PF------------YSNVCELAANCDILIICCGLTAETHH 236
           AFG  +          ++Y P+              ++ EL A  D + +   LT ET  
Sbjct: 161 AFGMKV----------IAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRG 210

Query: 237 MINKQVLSALGKEGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +I  + L A  K GV +IN  RG IIDE  L   L  G++ GA LDVFE EP
Sbjct: 211 LIGAEEL-AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP 261

Length = 526

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  148 bits (377), Expect = 1e-42
 Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 18/232 (7%)

Query: 61  AQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVF 118
           A+  + I   G + ++AE L  +    V+ + T S G +H+D+   +  GI V+N     
Sbjct: 42  AEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNV-TYS 100

Query: 119 SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG--IGSKLGGKRVGIVG 176
              VAD  V L++  LR                + AE + YSLG   G +L    VG++G
Sbjct: 101 PNSVADYTVMLMLMALRKYKQI----------MKRAEVNDYSLGGLQGRELRNLTVGVIG 150

Query: 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETH 235
            G IG  V K L  FGC I          V  Y  Y ++  L    DI+ +   LT ET+
Sbjct: 151 TGRIGQAVIKNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETY 210

Query: 236 HMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
           H+INK+ + A  K+GV+ IN  RG +ID + L+  L  G+I GA LDV E E
Sbjct: 211 HLINKESI-AKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGE 261

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  148 bits (375), Expect = 2e-42
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 13/222 (5%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           + AE L  +P ++L+ T S G +H+D+  CR RGI V N  +     VA+ A  LL+ L 
Sbjct: 53  LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALS 112

Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGI-GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
           R +       +   R R+   GD    G+ G +L GK +G+VG G IG  VA+    FG 
Sbjct: 113 RKL------REAIERTRR---GDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGM 163

Query: 194 SISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
            +          ++      Y ++ EL    DI+ +    T +THH+IN++  + +    
Sbjct: 164 KVLAYDVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGA 223

Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           V+IN  RG ++D + LVR L +G++ GAGLDV E E  + +E
Sbjct: 224 VLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREE 265

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (371), Expect = 4e-42
 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 16/228 (7%)

Query: 65  EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH-VDIAECRRRGITVANAGNVFSEDVA 123
           +A++ +G A    E L   P VR V    AG+   V+       G    NA   ++E VA
Sbjct: 30  DALVWTGSAREP-ERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVA 88

Query: 124 DLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSL 183
           + A+ LL+  LR + A  R    W    +            + L G  V IVG G IG  
Sbjct: 89  EHALALLLAGLRQLPARAR-ATTWDPAEEDDLV--------TLLRGSTVAIVGAGGIGRA 139

Query: 184 VAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239
           +   L  FG  +   +R+ +P      + P    + E+  + D +++   LT ET H+++
Sbjct: 140 LIPLLAPFGAKVIAVNRSGRPVEGADETVPA-DRLDEVWPDADHVVLAAPLTPETRHLVD 198

Query: 240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
              L+A+     ++N+ RGP++D   LV  L  GEI GA LDV + EP
Sbjct: 199 AAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP 246

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  147 bits (373), Expect = 1e-40
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 22/232 (9%)

Query: 65  EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDV 122
           +A++      VT E +   P ++++     G++++DI     RGI V NA  GN  S   
Sbjct: 42  DALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTIS--A 99

Query: 123 ADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSI 180
           A+ A+ +L+   RNI  +D  +K  +W R             +G++L GK +G++GLG I
Sbjct: 100 AEHALAMLLAAARNIPQADASLKEGEWDRKAF----------MGTELYGKTLGVIGLGRI 149

Query: 181 GSLVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHH 236
           GS+VAKR  AFG  +     Y S  +   +      ++ EL A  D + +   LT ET  
Sbjct: 150 GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRG 209

Query: 237 MINKQVLSALGKEGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +I  + L A  K+GV ++N  RG IIDE  L   L +G ++ A LDVFE EP
Sbjct: 210 LIGAEEL-AKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP 260

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  141 bits (358), Expect = 4e-40
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 19/220 (8%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
           P  A  L  +P ++L++TT      +D+A  + RGI V   G       A+L   L++ L
Sbjct: 58  PFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILAL 116

Query: 134 LRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAF 191
            RN+   D  ++   W               +G+ L GK +GIVGLG IG+ VA+   AF
Sbjct: 117 ARNLPEEDAALRAGGWQT------------TLGTGLAGKTLGIVGLGRIGARVARIGQAF 164

Query: 192 GCS-ISYNSR-TKKPSVSYPFYSNVC--ELAANCDILIICCGLTAETHHMINKQVLSALG 247
           G   I+++S  T + + +    + V   EL A  D++ +   L+  T  ++  + L+ + 
Sbjct: 165 GMRVIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMK 224

Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
              +++N  RGP++DE  L+  L  G I GA LDVF+ EP
Sbjct: 225 PTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEP 264

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  141 bits (357), Expect = 5e-40
 Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 9/216 (4%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +  E L  +P ++L+  T+ G N+VDI   +++GI V N     +E VA     +L+ LL
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLL 112

Query: 135 RNISASDRFVKQWLRPRQAAEGDCYS--LGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
             I+  DR+VK      + +E   ++       ++ GK+ GI+GLG+IG  VAK   AFG
Sbjct: 113 GRINYYDRYVKS----GEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 193 CSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
             + Y S + K     Y   S + EL    DI+ I   L  +T ++I  + L  L    +
Sbjct: 169 AKVVYYSTSGKNKNEEYERVS-LEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +IN+GRG I++E++L + L + +I  AGLDV E EP
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEP 262

Length = 311

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  138 bits (350), Expect = 1e-38
 Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 24/222 (10%)

Query: 75  VTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           + A  L  +    V+L+    AG N+VD+   +  GITV          VA+ AV LL+ 
Sbjct: 56  LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLA 115

Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSL-G-IGSKLGGKRVGIVGLGSIGSLVAKRLDA 190
           L R I       + + R R   EG+ +SL G +G  L GK VG++G G IG   A+ L  
Sbjct: 116 LNRKI------HRAYNRVR---EGN-FSLDGLLGFDLHGKTVGVIGTGKIGQAFARILKG 165

Query: 191 FGCS-ISY----NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245
           FGC  ++Y    N    K  V Y    ++ EL A  DI+ + C LT ETHH+IN + ++ 
Sbjct: 166 FGCRVLAYDPYPNPELAKLGVEY---VDLDELLAESDIISLHCPLTPETHHLINAETIAK 222

Query: 246 LGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
           + K+GV+ IN  RG +ID + L+  L  G+I G GLDV+E E
Sbjct: 223 M-KDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  136 bits (345), Expect = 4e-38
 Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 16/219 (7%)

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN-AGNVFSEDVADLAVGLLIDLL 134
             E       ++L+     G ++VD+      G+ V    G V  + VA+ AV L++ +L
Sbjct: 60  DKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVL 119

Query: 135 RNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL-DAF 191
           R I+ +   VK  +W               +G +L GK VGI+G G+IGS VA+ L + F
Sbjct: 120 RKINQASEAVKEGKWTERAN---------FVGHELSGKTVGIIGYGNIGSRVAEILKEGF 170

Query: 192 GCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCGLTAETHHMINKQVLSALGK 248
              +          V     +      EL A  DI+ +   LT ET+HMIN++  S + K
Sbjct: 171 NAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKK 230

Query: 249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
             +++N  RG +IDE+ L+  L  G+I GAGLDV E EP
Sbjct: 231 GVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP 269

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (334), Expect = 1e-36
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 15/216 (6%)

Query: 84  PAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLIDLLRNISASD 141
           P+++ +    AG+N++D+    +RGI V N    N  +  VA+L + +++ L RNI  + 
Sbjct: 49  PSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGAN--ANAVAELVIAMMLALSRNIIQAI 106

Query: 142 RFVKQWLRPRQAAEG-DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC------- 193
           ++V        +          +G++L GK +G++GLG+IG LVA    A G        
Sbjct: 107 KWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDP 166

Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV- 252
            +S      K SV     +++ EL A  D + +   LT ET  +IN ++L+ + K G + 
Sbjct: 167 YLSVE-AAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKM-KPGAIL 224

Query: 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
           +N  RG I+DE+ L+  L +G++ G   D  E    
Sbjct: 225 LNFARGEIVDEEALLEALDEGKLGGYVTDFPEPALL 260

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  130 bits (329), Expect = 2e-35
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 31/224 (13%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
            V    L     V+ V T + G +H+D    + RGI  ANA    +  VA+  +  L+  
Sbjct: 47  KVNEALLEGSK-VKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALL-- 103

Query: 134 LRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
                         L  RQ           G  L GK VGIVG+G++GS +A+RL+A G 
Sbjct: 104 -------------VLAQRQ-----------GFSLKGKTVGIVGVGNVGSRLARRLEALGM 139

Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKE 249
           ++      +  +   P + ++ EL A  DI+ +   LT +    T+H++++  L+AL   
Sbjct: 140 NVLLCDPPRAEAEGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPG 199

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
            ++IN  RG +ID Q L+  L +G+     LDV+ENEP++  EL
Sbjct: 200 QILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLEL 243

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  126 bits (320), Expect = 1e-34
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 29/230 (12%)

Query: 66  AILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVD--IAECRRRGITVANAGNVFSEDVA 123
            +     AP   E LR +P +R+V T SAG + V   + E    G+T+ NA  V     A
Sbjct: 41  VVPPYMAAPPVLEALRALPRLRVVQTLSAGYDGVLPLLPE----GVTLCNARGVHDASTA 96

Query: 124 DLAVGLLIDLLRNISASDRFVK-----QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLG 178
           +LAV L++  LR +    RFV+     +W   R  +            L  +RV IVG G
Sbjct: 97  ELAVALILASLRGL---PRFVRAQARGRWEPRRTPS------------LADRRVLIVGYG 141

Query: 179 SIGSLVAKRLDAFGCSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETHHM 237
           SIG  + +RL  F   ++  +RT +P    +     +  L    D++++   LT ET  +
Sbjct: 142 SIGRAIERRLAPFEVRVTRVARTARPGEQVHGI-DELPALLPEADVVVLIVPLTDETRGL 200

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           ++ + L+ +    +++N+ RGP++D   LV  L  G ++ A LDV + EP
Sbjct: 201 VDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRLR-AALDVTDPEP 249

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  123 bits (310), Expect = 3e-33
 Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL 133
           P+  E +     ++ +    AGL ++D+   + +GI + NA     + V + A+G+L+ L
Sbjct: 51  PIDKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLAL 110

Query: 134 LRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAF 191
              ++ +D+ V+   W R     EG+      G +L GK VGI+G G++G   AKRL  F
Sbjct: 111 FNKLNRADQEVRNGIWDR-----EGN-----RGVELMGKTVGIIGYGNMGKAFAKRLSGF 160

Query: 192 GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
           GC +    + K    +Y    ++  L    DIL +   LT ET  M+NK+ +S+  K   
Sbjct: 161 GCKVIAYDKYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFY 220

Query: 252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
            IN  RG ++  ++LV+ L  G+I GA LDV E E
Sbjct: 221 FINTARGKVVVTKDLVKALKSGKILGACLDVLEYE 255

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  123 bits (312), Expect = 4e-33
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 22/230 (9%)

Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVA--NAGNVFSEDVADLAVGLL 130
           A +TAE +     ++L +T   G +HVD+     RGITVA     NV S  VA+  V ++
Sbjct: 72  AYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVS--VAEHVVMMI 129

Query: 131 IDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKRVGIVGLGSIGSLVAKR 187
           + L+RN      +V       QA EG      +  +   L GK VG VG G IG  V +R
Sbjct: 130 LILVRN------YVPGH---EQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRR 180

Query: 188 LDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
           L  F   + Y  R + P      +    ++++ ++ + CD++ I C L  ET  + NK++
Sbjct: 181 LKPFDVHLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKEL 240

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           LS + K   ++N  RG I D + +   L  G + G   DV+  +P  PK+
Sbjct: 241 LSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQP-APKD 289

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  124 bits (312), Expect = 8e-33
 Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 15/222 (6%)

Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           A +TAE +   P ++L +T   G +HVD+      GITVA      S  VA+  V +++ 
Sbjct: 102 AYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILA 161

Query: 133 LLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDA 190
           L+RN   S R   +  W         DC S      L G  VGIVG G IG  V +RL  
Sbjct: 162 LVRNYEPSHRQAVEGGWNIA------DCVSRSY--DLEGMTVGIVGAGRIGLAVLRRLKP 213

Query: 191 FGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA 245
           F   + Y  R + P      +   ++ +   L + CD++ I C L  ET H+ +  VLS 
Sbjct: 214 FDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR 273

Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           + +   ++N  RG I+D   +VR L  G + G   DV+  +P
Sbjct: 274 MKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQP 315

Length = 385

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  118 bits (298), Expect = 5e-31
 Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 37/234 (15%)

Query: 77  AETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN-----AGNVFSEDVADLAVGLLI 131
           A+ +     ++L+M    GL  VD+    + GI VA       GN  S   A++A+ L++
Sbjct: 74  ADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAAS--CAEMAIYLML 131

Query: 132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLG--IGSKLGGKRVGIVGLGSIGSLVAKRLD 189
            LLR  +     +K               LG  IG  L GK V I+G G+IG  +AKRL 
Sbjct: 132 GLLRKQNEMQISLKARR------------LGEPIGDTLFGKTVFILGYGAIGIELAKRLR 179

Query: 190 AFGCSISYNSR--TKKPSVSYPF-YSNVC-------------ELAANCDILIICCGLTAE 233
            FG  +    R  T +P         +V              E A   DI+++CC LT E
Sbjct: 180 PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKE 239

Query: 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           T  ++N + LS++ K  +++NI RG ++D   ++  L  G + G  +DV  +EP
Sbjct: 240 TAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEP 293

Length = 347

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  115 bits (289), Expect = 4e-30
 Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 17/234 (7%)

Query: 62  QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSED 121
           +  +  +S+    + A  L   P ++L++  + G N+VD+A  R RGITV N     +  
Sbjct: 44  RGAQVAISNK-VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPS 102

Query: 122 VADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCY-SLGIGSKLGGKRVGIVGLG 178
           VA   + LL+ L   +    + V    W    Q +   C     I  +L GK +G++G G
Sbjct: 103 VAQHTLALLLALATRLPDYQQAVAAGRW----QQSSQFCLLDFPI-VELEGKTLGLLGHG 157

Query: 179 SIGSLVAKRLDAFGCSI---SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETH 235
            +G  VA+  +AFG  +       R  +P    P      EL    D L + C LT  T 
Sbjct: 158 ELGGAVARLAEAFGMRVLIGQLPGRPARPD-RLPLD----ELLPQVDALTLHCPLTEHTR 212

Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
           H+I  + L+ +    ++IN  RG ++DEQ L   L  G + GA  DV   EP V
Sbjct: 213 HLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPV 266

Length = 317

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  113 bits (284), Expect = 4e-29
 Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 26/243 (10%)

Query: 61  AQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVF 118
           A+  + ++     P   E    +    ++ +   SAG++ +D+   +  G+ + N     
Sbjct: 42  AKGYDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYS 101

Query: 119 SEDVADLAVGLLIDLLRNISASDRFVKQ----WLRPRQAAEGDCYSLGIGSKLGGKRVGI 174
              +A+ AV   ++LLRN    DR V +    W       E           +    VGI
Sbjct: 102 PRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRWAPGLIGRE-----------IRDLTVGI 150

Query: 175 VGLGSIGSLVAKRLDAFGC-----SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
           +G G IGS  AK    FG          N   +K  +   +Y ++ +L    DI+ +   
Sbjct: 151 IGTGRIGSAAAKIFKGFGAKVIAYDPYPNPELEKFLL---YYDSLEDLLKQADIISLHVP 207

Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE-PD 288
           LT E HH+IN +  + +    +++N  RG ++D + L+  L  G+I GA LD +ENE   
Sbjct: 208 LTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGY 267

Query: 289 VPK 291
             K
Sbjct: 268 FNK 270

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  111 bits (279), Expect = 1e-28
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 7/214 (3%)

Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
           T ETL  +P ++L+  T+ G N+VD+   +  GI V N     S  V +  +G++  L  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 136 NISA--SDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
           ++     D+   +W   +Q     CY     + + G  +G+ G G +G+ V +   A G 
Sbjct: 116 SLMGWYRDQLSDRWATCKQF----CYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGM 171

Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI 253
            + Y    K  SV    Y+   E+    DI+ + C LT  T ++IN + L+ +     +I
Sbjct: 172 KVLYAEH-KGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLI 230

Query: 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           N GRGP++DEQ L+  L  G+I GA LDV   EP
Sbjct: 231 NTGRGPLVDEQALLDALENGKIAGAALDVLVKEP 264

Length = 314

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  111 bits (279), Expect = 1e-28
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 41/225 (18%)

Query: 80  LRLMPAVRLVMTTSAGLNHVDIAE-------CRRRGITVANAGNVFSEDVADLAVGLLID 132
           L  +P ++ + +  AG++H+            R     + + G   ++ +A+  +  ++ 
Sbjct: 53  LARLPNLKAIFSLGAGVDHLLADPDLPDVPIVR-----LVDPG--LAQGMAEYVLAAVLR 105

Query: 133 LLRNISASDRFVKQ-----W--LRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVA 185
           L R++   DR+  Q     W  L  R AAE              +RVG++GLG +G+ VA
Sbjct: 106 LHRDM---DRYAAQQRRGVWKPLPQRPAAE--------------RRVGVLGLGELGAAVA 148

Query: 186 KRLDAFGCSISYNSRTKKPSVSYPFYSNVCELA---ANCDILIICCGLTAETHHMINKQV 242
           +RL A G  +S  SR+ K       +     L    A  DIL+    LT ET  ++N ++
Sbjct: 149 RRLAALGFPVSGWSRSPKDIEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAEL 208

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           L+ L +   +IN+GRGP + E +L+  L  G + GA LDVFE EP
Sbjct: 209 LARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP 253

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  108 bits (270), Expect = 7e-27
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 25/215 (11%)

Query: 93  SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQ 152
           + G N+VD+    + GI V N   V +E  A+LA  L +   R I  +D F++  L    
Sbjct: 94  AVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--- 150

Query: 153 AAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL-DAFGCSISY-----NSRTKK--- 203
             EG    L +G+ L G+ VG++G G IGS  A+ + + F  ++ Y     ++R +K   
Sbjct: 151 --EGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT 208

Query: 204 -----------PSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252
                        V++   S++ E+    D++ +   L   T+H+INK+ L+ + KE V+
Sbjct: 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVL 268

Query: 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +N  RGP+IDE  LV  L    +   GLDVFE+EP
Sbjct: 269 VNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP 303

Length = 386

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  104 bits (262), Expect = 4e-26
 Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 53/257 (20%)

Query: 67  ILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH-VDIAECRRRGITVANAGNVFSEDVADL 125
           IL +      AE    +P +RLV   SAG +H +     +   + +  A  +    +A+ 
Sbjct: 39  ILCTFHPHPDAE---DVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEW 95

Query: 126 AVGLLIDLLRNISASDRFVKQ--------WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177
            +G  +        S  F++         W R ++A               GKRVGI+G 
Sbjct: 96  VIGTWL------VLSHHFLQYIELQKEQTWGRRQEAYSV--------EDSVGKRVGILGY 141

Query: 178 GSIGSLVAKRLDAFGCS-ISYNSRTKK-----------------PSVSYP--FYSNVCE- 216
           GSIG   A+   A G    +Y    +                  P  S P  ++S   + 
Sbjct: 142 GSIGRQTARLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKA 201

Query: 217 -----LAANCDILIICCGLTAETHHMINKQVLSALGKEG-VVINIGRGPIIDEQELVRCL 270
                L  + D+L++   LT  T H++  +    L K    V NI RG ++D   LV  L
Sbjct: 202 SLHEFLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAAL 261

Query: 271 VQGEIKGAGLDVFENEP 287
             G+I+GA LDV + EP
Sbjct: 262 ESGQIRGAALDVTDPEP 278

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  103 bits (258), Expect = 2e-25
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 13/234 (5%)

Query: 61  AQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVF 118
           A+  +A++  G      E L +     ++ V T + G NH+D+   +  G  +A   +  
Sbjct: 42  AKGHDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYS 101

Query: 119 SEDVADLAVGLLIDLLRNIS-ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177
              +A+LA  L + L R+ +  + R   +  +                ++    VGI+G 
Sbjct: 102 PNAIAELAFTLAMTLSRHTAYTASRTANKNFKVDPF--------MFSKEIRNSTVGIIGT 153

Query: 178 GSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG-LTAETH 235
           G IG   AK     G   I Y+      +     + ++ EL    DI+ +    +  +  
Sbjct: 154 GRIGLTAAKLFKGLGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKND 213

Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
            +INK+ +S +    ++IN  RG + DE+ ++  L  G++ G G DV  NE ++
Sbjct: 214 KLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEI 267

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  102 bits (256), Expect = 7e-25
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 22/230 (9%)

Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVA--NAGNVFSEDVADLAVGLL 130
           A VTAE ++    + L++T   G +H+D+      G+TVA     NV S  VA+  +  +
Sbjct: 109 AYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVS--VAEDELMRI 166

Query: 131 IDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKRVGIVGLGSIGSLVAKR 187
           + LLRN      F+  +    Q   G+    GI  +   L GK VG VG G IG L+ +R
Sbjct: 167 LILLRN------FLPGY---HQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQR 217

Query: 188 LDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
           L  F C++ Y+ R K            F  ++  +   CD+++I   LT +T  M NK+ 
Sbjct: 218 LKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKER 277

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           ++ + K  +++N  RG I+D Q +      G I G G DV+  +P  PK+
Sbjct: 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQP-APKD 326

Length = 386

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 15/217 (6%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLID 132
           +T E L   P +  +     G N VD+    +RGI V NA   N  S  VA+L +G +I 
Sbjct: 54  LTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGEIIM 111

Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAF 191
           L R +           R   A  G       GS ++ GK +GI+G G IGS ++   +A 
Sbjct: 112 LARRLPD---------RNAAAHRGIWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEAL 162

Query: 192 GCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           G   I Y+   K P  +    S++ EL A  D + +    T  T +MI  + ++ + K  
Sbjct: 163 GMRVIFYDIAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGA 222

Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           ++IN  RG ++D   L   L  G + GA +DVF  EP
Sbjct: 223 ILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEP 259

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 19/185 (10%)

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKL 167
           G  V  A  V +E +A+  +  ++      +A+ R  + W++   A +   +       L
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAIL------AAAKRLPEIWVK--GAEQ---WRREPLGSL 133

Query: 168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDI 223
            G  +GIVG G+IG  +A+R  A G  +    R+ +PS    V     +++ EL A  D 
Sbjct: 134 AGSTLGIVGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEA--AADLAELFARSDH 191

Query: 224 LIICCGLTAETHHMINKQVLSALGKEGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
           L++   LT ET H+IN  VL A  K G+ +INI RG ++D++ L+  L  G I  A LDV
Sbjct: 192 LVLAAPLTPETRHLINADVL-AQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDV 250

Query: 283 FENEP 287
            + EP
Sbjct: 251 TDPEP 255

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%)

Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
           VR V T + G +H+D+      GIT ++A    +  V D  +G L+ L            
Sbjct: 59  VRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTL------------ 106

Query: 146 QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS 205
                   AE +      G  L  +  G+VG G +G  + + L   G  +      ++ +
Sbjct: 107 --------AERE------GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA 152

Query: 206 VSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGVVINIGRGPII 261
                + ++  +   CD++ +   LT E    T H++++  L++L     +IN  RG ++
Sbjct: 153 EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVV 212

Query: 262 DEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           D Q L   L+ GE   A LDV+E EP +  EL
Sbjct: 213 DNQALREALLSGEDLDAVLDVWEGEPQIDLEL 244

Length = 381

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 90.3 bits (224), Expect = 6e-21
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 18/225 (8%)

Query: 65  EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVAD 124
           EAIL  G   V  +  +++ ++      SAG++H+D++      +  +NAG  +S  VA+
Sbjct: 36  EAILIKG-RYVPGKKTKMIQSL------SAGVDHIDVSGIPENVVLCSNAG-AYSISVAE 87

Query: 125 LAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLV 184
            A  LL+   +NI  ++  +K     +         L     L  K +GI+G G IG  V
Sbjct: 88  HAFALLLAWAKNICENNYNMKNGNFKQSP-----TKL-----LYNKSLGILGYGGIGRRV 137

Query: 185 AKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244
           A    AFG +I   +R+         Y    ++    D ++I   LT ET  MIN ++LS
Sbjct: 138 ALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLS 197

Query: 245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
              K   +IN+ R  ++D+ +++  L     K    DV+ NEP +
Sbjct: 198 LFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPII 242

Length = 303

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 90.1 bits (224), Expect = 7e-21
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 77  AETLRLMPAVRLVMTTSAGLNHV-------DIAECRRRGITVANAGNVFSEDVADLAVGL 129
           A+  R +  +R V   +AG + V       ++A    RG+            VA+  + L
Sbjct: 51  ADAARRLTRLRWVQALAAGPDAVLAAGFAPEVAVTSGRGL--------HDGTVAEHTLAL 102

Query: 130 LIDLLRNISASDRFVKQWLRPRQAAE-GDCYSLGIGSKLG---GKRVGIVGLGSIGSLVA 185
           ++  +R +   D   +     R A E G    L    +L    G RV I G GSIG  +A
Sbjct: 103 ILAAVRRL---DEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIGQRLA 159

Query: 186 KRLDAFGCSISYNSRTKKPSVSYPFYS--NVCELAANCDILIICCGLTAETHHMINKQVL 243
             L A G  ++  +R+      +P  +   + EL    D+L++    T  T H ++ +VL
Sbjct: 160 PLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVL 219

Query: 244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +AL K   V+N+GRG  +DE  LV  L  G + GA LDV   EP
Sbjct: 220 AALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP 263

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 82.1 bits (204), Expect = 1e-17
 Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 29/204 (14%)

Query: 95  GLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRP 150
           G N VD+    +RGI V NA   N  S  VA+L +G +I LLR I   +    +  W + 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGEIILLLRGIPEKNAKAHRGGWNK- 141

Query: 151 RQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYP 209
             +A G  +      ++ GK +GIVG G IG+ ++   ++ G     Y+   K P     
Sbjct: 142 --SAAG-SF------EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----- 187

Query: 210 FYSNVC------ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDE 263
              N        EL A  D++ +    T  T +MI  + L+ +    ++IN  RG ++D 
Sbjct: 188 -LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 264 QELVRCLVQGEIKGAGLDVFENEP 287
             L   L  G + GA +DVF  EP
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEP 270

Length = 409

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 93  SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQW-LRPR 151
           SAG +  D+    +  + ++N  +   E +A+  V   I+L+R+ +     V++   R  
Sbjct: 77  SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-- 134

Query: 152 QAAEGDCYSLGIGSK-LGGKRVGIVGLGSIGSLVAKRL-DAFGCSIS----YNSRTKKPS 205
                  +   I S+ +   +V ++G G IG  VAK     +G  +     + +      
Sbjct: 135 -------WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATY 187

Query: 206 VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQE 265
           V Y     + E     DI+ +    T   H++ N  +     K  V +N  RG ++D + 
Sbjct: 188 VDYK--DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKA 245

Query: 266 LVRCLVQGEIKGAGLDVFENE 286
           L+  L  G IKGA LD +E E
Sbjct: 246 LLDALDNGLIKGAALDTYEFE 266

Length = 332

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
           ++ +   +AG +  D+   ++  I ++N  +   E +A+ +V + + L+R     +R V+
Sbjct: 70  IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129

Query: 146 ----QWLRPRQAAEGDCYSLGIGSK-LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSR 200
                W               I SK +    V I+G G IG+  AK    FG +I+    
Sbjct: 130 AHDFTWQAE------------IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDA 177

Query: 201 TKKPSVSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259
                + +  Y +  + A  + DI+ +      E++H+ +K +   + K  +++N  RG 
Sbjct: 178 YPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237

Query: 260 IIDEQELVRCLVQGEIKGAGLDVFENEPD 288
           +I+  +L+  +  G + GA +D +ENE  
Sbjct: 238 VINTPDLIAAVNDGTLLGAAIDTYENEAA 266

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 65  EAILSSGGAPVTAETLRLMPAVRLV-MTTS----AGLNHVDIAECRRRGITVANAGNVFS 119
           + +L S    +  E L   P ++ + M  S       N VDIA  R  GITV    +   
Sbjct: 48  DCVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSEESAN-VDIAAARENGITVTGIRDYGD 106

Query: 120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
           E V +  +  LI LL          KQW                  +L G +VGI+GLG+
Sbjct: 107 EGVVEYVISELIRLLHGFGG-----KQWK-------------EEPRELTGLKVGIIGLGT 148

Query: 180 IGSLVAKRLDAFGCSISYNSRTKKPSVSYP--FYSNVCELAANCDILIICCGLTAETHHM 237
            G ++A  L  FG  + Y SRT+KP        Y  + EL    D++  C          
Sbjct: 149 TGQMIADALSFFGADVYYYSRTRKPDAEAKGIRYLPLNELLKTVDVICTCLPKNVIL--- 205

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCL 270
           + ++    LG   ++ N   GP  + + L + L
Sbjct: 206 LGEEEFELLGDGKILFNTSLGPSFEVEALKKWL 238

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 10/127 (7%)

Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP---FYSNVCELAA---NCDILI 225
           +GI+G G +GS VA+ L  +G  +   SR++K   S+P    ++   EL+A      +LI
Sbjct: 139 IGILGAGVLGSKVAQSLQTWGFPLRCWSRSRK---SWPGVQSFAGREELSAFLSQTRVLI 195

Query: 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
                T ET  +IN+Q+L  L     ++N+ RG  + E +L+  L  G++KGA LDVF  
Sbjct: 196 NLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSR 255

Query: 286 EPDVPKE 292
           EP +P E
Sbjct: 256 EP-LPPE 261

Length = 312

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 34/254 (13%)

Query: 32  GDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA-VRLVM 90
               F+   +    A    L           S++ +L        AE   +     RL+ 
Sbjct: 39  IGAGFADQAYVQAGAIVVTL------AKALWSLDVVLKVKEPLTNAEYALIQKLGDRLLF 92

Query: 91  TTSAGLNHVDIAEC-RRRGITVANAGNVFSEDVADLAVG----LLIDLLRNISASDRFVK 145
           T + G +H D+ E   R G+T      V    +   ++G     +  + R     +    
Sbjct: 93  TYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIAR---FLEVQQP 149

Query: 146 QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY---NSRTK 202
             L             G    + GK V +VG G +G   A+ L   G  +     N    
Sbjct: 150 GRL-------------GGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEAL 196

Query: 203 KP--SVSYPFYSNVCELAANCDILIICCGLTAETHHMIN-KQVLSALGKEGVVINIGRGP 259
           +    +       + E  A  D+++    L  +   ++  ++++  +    V++N+  G 
Sbjct: 197 EQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGA 256

Query: 260 IIDEQELVRCLVQG 273
           +   Q L   L++ 
Sbjct: 257 VGCVQALHTQLLEE 270

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 71.1 bits (174), Expect = 6e-14
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 30/220 (13%)

Query: 78  ETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNI 137
           E+L     ++ V T +AG +HVD A  ++ GI  + A    +  V +     L+ L    
Sbjct: 51  ESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLML---- 106

Query: 138 SASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY 197
                           AE D      G  L  + VGIVG+G++G  +  RL+A G     
Sbjct: 107 ----------------AERD------GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL 144

Query: 198 NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGVVI 253
               +        + ++ EL    DIL     L  +    T H+ +++++ +L    ++I
Sbjct: 145 CDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI 204

Query: 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           N  RG ++D   L+ CL +G+     LDV+E EP++  EL
Sbjct: 205 NACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVEL 244

Length = 378

>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism]

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRT--------KKPSVSYPFYSN 213
           I   L  K+V ++G G +G LVAK L   G   I+  +RT        KK          
Sbjct: 172 IFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEE 231

Query: 214 VCELAANCDILIICCGLTAETHHMINKQVLSALGKE---GVVINIGRGPIIDE 263
           + E  A  D++I     T+  H +I ++++    K     ++++I     ++ 
Sbjct: 232 LLEALAEADVVISS---TSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP 281

Length = 414

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP------FYSNVCELAANCDI 223
            ++  +GLG +GS +A  L   G  ++  +RT + +            ++  E AA  D+
Sbjct: 1   MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60

Query: 224 LIICCGLTAETHHMINKQ--VLSALGKEGVVINI 255
           +I      A    ++  +  +L  L    +VI++
Sbjct: 61  VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDM 94

Length = 286

>gnl|CDD|237341 PRK13302, PRK13302, putative L-aspartate dehydrogenase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 23/112 (20%)

Query: 171 RVGIVGLGSIGSLVAKRLD--AFGCSIS------------YNSRTKKPSVSYPFYSNVCE 216
           RV I GLG+IG  +A+ LD    G ++S            +    ++P    P      +
Sbjct: 8   RVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLD----Q 63

Query: 217 LAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268
           LA + DI++      A     I + VL+A GK+ +V+++  G ++  ++L+ 
Sbjct: 64  LATHADIVVEAA--PASVLRAIVEPVLAA-GKKAIVLSV--GALLRNEDLID 110

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.95
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.84
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.74
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.67
PLN02494	477	adenosylhomocysteinase	99.64
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.58
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.55
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.54
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.54
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.42
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.41
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.39
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.39
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.35
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.32
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.28
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.26
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.25
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.22
PLN02858	1378	fructose-bisphosphate aldolase	99.21
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.21
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.2
PLN02712	667	arogenate dehydrogenase	99.17
PLN02858	1378	fructose-bisphosphate aldolase	99.13
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.13
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.1
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.05
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.03
PLN02256	304	arogenate dehydrogenase	99.02
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.96
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.93
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.93
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.92
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.89
PLN02688	266	pyrroline-5-carboxylate reductase	98.88
PLN02712	667	arogenate dehydrogenase	98.88
PRK07417	279	arogenate dehydrogenase; Reviewed	98.83
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.83
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.8
PRK05225	487	ketol-acid reductoisomerase; Validated	98.8
PRK08655	437	prephenate dehydrogenase; Provisional	98.79
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.79
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.78
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.78
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.78
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.77
PRK08818	370	prephenate dehydrogenase; Provisional	98.75
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.75
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.75
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.74
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.74
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.72
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.72
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.72
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.71
PRK06545	359	prephenate dehydrogenase; Validated	98.71
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.7
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.69
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.69
PRK08507	275	prephenate dehydrogenase; Validated	98.68
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.68
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.67
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.66
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.65
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.65
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.65
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.65
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.64
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.63
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.63
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.61
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.6
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.59
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.58
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.56
PRK07680	273	late competence protein ComER; Validated	98.56
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.55
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.5
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.47
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.4
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.39
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.37
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.37
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.36
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.36
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.33
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.31
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.29
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.28
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.27
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.27
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.27
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.26
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.25
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.23
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.23
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.2
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.2
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.19
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.18
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.16
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.16
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.15
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.14
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.14
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.13
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.13
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.08
PLN00203	519	glutamyl-tRNA reductase	98.07
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.07
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.04
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.0
PRK06141	314	ornithine cyclodeaminase; Validated	98.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.99
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.98
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.97
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.96
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.91
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.88
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.87
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.87
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.86
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.85
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.84
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.84
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.78
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.78
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.78
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.77
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.75
PRK14982	340	acyl-ACP reductase; Provisional	97.75
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.75
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.75
PRK07340	304	ornithine cyclodeaminase; Validated	97.7
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.7
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.67
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.65
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.65
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.64
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.6
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.58
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.58
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.58
PRK08618	325	ornithine cyclodeaminase; Validated	97.56
PTZ00117	319	malate dehydrogenase; Provisional	97.55
PRK06444	197	prephenate dehydrogenase; Provisional	97.54
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.52
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.52
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.48
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.47
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.47
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.46
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.45
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.43
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.43
PRK06046	326	alanine dehydrogenase; Validated	97.42
PRK06823	315	ornithine cyclodeaminase; Validated	97.41
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.41
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.41
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.4
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.4
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.38
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.37
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.36
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.35
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.34
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.31
PRK08291	330	ectoine utilization protein EutC; Validated	97.3
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.3
PRK06407	301	ornithine cyclodeaminase; Provisional	97.3
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.29
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.29
PRK06199	379	ornithine cyclodeaminase; Validated	97.28
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.25
PRK07589	346	ornithine cyclodeaminase; Validated	97.22
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.15
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.14
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.14
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.13
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.08
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.08
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.05
PRK06223	307	malate dehydrogenase; Reviewed	97.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.02
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.01
PLN02477	410	glutamate dehydrogenase	97.01
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.98
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.97
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.92
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.92
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.91
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.91
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.87
PRK09414	445	glutamate dehydrogenase; Provisional	96.84
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.84
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.8
PRK14031	444	glutamate dehydrogenase; Provisional	96.78
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	96.77
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.77
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.72
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.71
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.71
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.71
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.7
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.7
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.68
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.68
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.67
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.65
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.65
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.64
PRK14030	445	glutamate dehydrogenase; Provisional	96.64
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.63
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.63
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.61
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.6
PRK09496	453	trkA potassium transporter peripheral membrane com	96.59
PRK11579	346	putative oxidoreductase; Provisional	96.58
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.56
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.52
COG5322	351	Predicted dehydrogenase [General function predicti	96.52
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.52
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.52
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.51
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.47
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.46
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.44
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.43
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.42
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.41
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.39
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.39
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.39
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.37
PRK10637	457	cysG siroheme synthase; Provisional	96.35
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.34
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.32
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.31
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.31
PRK06270	341	homoserine dehydrogenase; Provisional	96.3
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.29
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.28
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.25
PRK08223	287	hypothetical protein; Validated	96.22
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.21
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.18
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.15
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.13
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	96.12
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.1
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.09
PRK08328	231	hypothetical protein; Provisional	96.08
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.06
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.0
PRK12862	763	malic enzyme; Reviewed	95.99
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.99
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.95
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.95
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.92
PRK07411	390	hypothetical protein; Validated	95.91
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.9
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.89
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.89
PRK02102	331	ornithine carbamoyltransferase; Validated	95.85
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.85
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.84
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
PRK10669	558	putative cation:proton antiport protein; Provision	95.83
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.82
COG2344	211	AT-rich DNA-binding protein [General function pred	95.82
PRK06349	426	homoserine dehydrogenase; Provisional	95.82
PRK10206	344	putative oxidoreductase; Provisional	95.82
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.82
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.81
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.77
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.76
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.76
PRK09496	453	trkA potassium transporter peripheral membrane com	95.75
PRK05086	312	malate dehydrogenase; Provisional	95.75
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.74
PLN02527	306	aspartate carbamoyltransferase	95.74
PRK12861	764	malic enzyme; Reviewed	95.73
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.69
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.68
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.68
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.64
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.61
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.6
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.58
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.52
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.5
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.49
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.49
PRK07877	722	hypothetical protein; Provisional	95.45
PLN02342	348	ornithine carbamoyltransferase	95.43
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.43
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.42
PLN02602	350	lactate dehydrogenase	95.39
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.36
PLN00106	323	malate dehydrogenase	95.32
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.32
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.31
PRK07806	248	short chain dehydrogenase; Provisional	95.31
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.25
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.25
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.23
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.22
PRK06392	326	homoserine dehydrogenase; Provisional	95.21
CHL00194	317	ycf39 Ycf39; Provisional	95.15
PRK05442	326	malate dehydrogenase; Provisional	95.14
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	95.06
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.05
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.05
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.03
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.02
PTZ00325	321	malate dehydrogenase; Provisional	94.92
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.92
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.92
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.91
PRK04148	134	hypothetical protein; Provisional	94.88
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.87
PRK04284	332	ornithine carbamoyltransferase; Provisional	94.86
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.86
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.85
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.84
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.83
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.81
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.8
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	94.78
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.75
PRK15076	431	alpha-galactosidase; Provisional	94.74
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.67
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.66
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.58
PRK14851	679	hypothetical protein; Provisional	94.57
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.52
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.47
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.46
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.41
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.4
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.4
COG2910	211	Putative NADH-flavin reductase [General function p	94.39
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.33
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.31
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	94.25
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.23
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.23
PRK10537	393	voltage-gated potassium channel; Provisional	94.17
PLN02214	342	cinnamoyl-CoA reductase	94.14
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.13
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.12
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.1
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.1
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.09
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.04
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.01
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.0
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	93.99
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.95
PLN03209	576	translocon at the inner envelope of chloroplast su	93.92
PRK08374	336	homoserine dehydrogenase; Provisional	93.92
PRK12937	245	short chain dehydrogenase; Provisional	93.9
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	93.83
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.8
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.77
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.73
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.73
PRK08192	338	aspartate carbamoyltransferase; Provisional	93.69
PRK05865	854	hypothetical protein; Provisional	93.63
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.62
COG0281	432	SfcA Malic enzyme [Energy production and conversio	93.6
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.59
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.59
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.5
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.47
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.47
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	93.43
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.41
PLN02383	344	aspartate semialdehyde dehydrogenase	93.38
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.37
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.37
PRK06701	290	short chain dehydrogenase; Provisional	93.36
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.35
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.34
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.23
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.23
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.18
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	93.17
PRK13529	563	malate dehydrogenase; Provisional	93.15
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.14
PLN02427	386	UDP-apiose/xylose synthase	93.12
PRK08265	261	short chain dehydrogenase; Provisional	93.11
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.07
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	93.05
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.04
PRK06196	315	oxidoreductase; Provisional	93.01
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.99
PRK14852	989	hypothetical protein; Provisional	92.94
PRK06523	260	short chain dehydrogenase; Provisional	92.93
PRK06398	258	aldose dehydrogenase; Validated	92.92
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.88
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	92.81
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.78
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.78
PRK08324	681	short chain dehydrogenase; Validated	92.68
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.65
COG1832	140	Predicted CoA-binding protein [General function pr	92.64
PRK07825	273	short chain dehydrogenase; Provisional	92.57
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	92.5
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	92.48
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	92.43
PRK06153	393	hypothetical protein; Provisional	92.36
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.34
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	92.33
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.33
PTZ00317	559	NADP-dependent malic enzyme; Provisional	92.28
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	92.26
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.21
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	92.2
PLN03129	581	NADP-dependent malic enzyme; Provisional	92.16
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.16
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.14
PRK06057	255	short chain dehydrogenase; Provisional	92.13
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	92.11
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	92.04
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	92.02
PRK08628	258	short chain dehydrogenase; Provisional	92.02
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.0
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	91.99
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	91.98
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	91.98
PRK05717	255	oxidoreductase; Validated	91.97
PRK06182	273	short chain dehydrogenase; Validated	91.96
PRK08862	227	short chain dehydrogenase; Provisional	91.94
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.93
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.93
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	91.91
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.91
PRK07890	258	short chain dehydrogenase; Provisional	91.9
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	91.89
PRK12828	239	short chain dehydrogenase; Provisional	91.86
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.73

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.8e-64  Score=468.46  Aligned_cols=274  Identities=34%  Similarity=0.522  Sum_probs=239.3

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      ||++++...++  .++..+.  +.+.|++..+.....+.. .+.+..+++|++++....++++++++++|+||+|+..|+
T Consensus         1 mk~~~~~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~   75 (324)
T COG1052           1 MKIVVLSTRKL--PPEVLER--LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSA   75 (324)
T ss_pred             CCcEEEecCcC--CHHHHHH--hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEecc
Confidence            57888888887  4666666  788888765443312222 445556899999998788999999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI  174 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI  174 (300)
                      ||||||+++|+++||.|+|+|++++++||||+++|||++.|++.+.++.+|+|.|.... ...+ .+  |.+++|||+||
T Consensus        76 G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~-~~~~-~~--~~~l~gktvGI  151 (324)
T COG1052          76 GYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSG-GPDP-LL--GFDLRGKTLGI  151 (324)
T ss_pred             ccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccC-Cccc-cc--ccCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999998431 1111 33  78999999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      ||+|+||+++|+++++|||+|.||+|++.+.    .++.+. +++|++++||+|++|||++++|+|+||++.|++||+|+
T Consensus       152 iG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga  230 (324)
T COG1052         152 IGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGA  230 (324)
T ss_pred             ECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCe
Confidence            9999999999999999999999999987421    234444 49999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV-PKELXXXXX  298 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~-~~~L~~~~n  298 (300)
                      +|||+|||++||++||++||++|+|+||||||||.||.+ +++|+.++|
T Consensus       231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~  279 (324)
T COG1052         231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDN  279 (324)
T ss_pred             EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccC
Confidence            999999999999999999999999999999999999986 568888777

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=3.8e-64  Score=467.94  Aligned_cols=274  Identities=30%  Similarity=0.453  Sum_probs=236.4

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      |+||||++.+.  .++..+.  |++.+++..+... +.+.++ +.+.++++|+++++ ..++++++++++|+||+|++.|
T Consensus         1 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~-~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g   74 (323)
T PRK15409          1 MKPSVILYKAL--PDDLLQR--LEEHFTVTQVANLSPETVEQ-HAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTIS   74 (323)
T ss_pred             CCceEEEeCCC--CHHHHHH--HHhcCcEEEcCCCCCCCHHH-HHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECc
Confidence            67899999986  4555555  7777776543221 223334 34556899999875 4589999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+|+||+++|+++||.|+|+|++++++||||++++||++.|+++.+++.+++|+|....  +.. ..  |.+|+|+|||
T Consensus        75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~--~~~-~~--g~~L~gktvG  149 (323)
T PRK15409         75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASI--GPD-WF--GTDVHHKTLG  149 (323)
T ss_pred             eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccC--ccc-cc--cCCCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999997211  111 12  7899999999


Q ss_pred             EEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          174 IVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      |||+|+||+.+|++++ +|||+|.+|++...+..    +. .+.++++++++||+|++|+|+|++|+++|+++.|++||+
T Consensus       150 IiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~  228 (323)
T PRK15409        150 IVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS  228 (323)
T ss_pred             EEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC
Confidence            9999999999999998 99999999998753321    22 346999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       249 ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      |++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||+
T Consensus       229 ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvi  281 (323)
T PRK15409        229 SAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVV  281 (323)
T ss_pred             CeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEE
Confidence            999999999999999999999999999999999999999874 5899999985

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-64  Score=465.72  Aligned_cols=272  Identities=31%  Similarity=0.415  Sum_probs=233.9

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      ++++++...+.  .+...+.  +... ..+.........++.+.+.++++|++++ +.+++++++++.+|+||+|++.|+
T Consensus         2 ~~~~vl~~~~~--~~~~~~~--l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~   75 (324)
T COG0111           2 MMIKVLVTDPL--APDALEE--LLAA-YDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGA   75 (324)
T ss_pred             CcceeeccCcc--CHHHHHH--HHhc-cccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccc
Confidence            56778888776  4554444  4433 2111111121223334455689999998 788999999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI  174 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI  174 (300)
                      |+||||+++++++||.|+|+|+.|+.+||||++++||++.|+++.+++.+++|.|.+    ..+  .  |.+|+||||||
T Consensus        76 Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~----~~~--~--g~el~gkTvGI  147 (324)
T COG0111          76 GVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR----KAF--R--GTELAGKTVGI  147 (324)
T ss_pred             cccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc----ccc--c--cccccCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999983    122  2  67999999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEECCCCCCC-C---CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-V---SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-~---~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      ||+|+||+.+|+++++|||+|++||+..... .   +.....+|++++++||||++|+|+|++|++||+++.|++||+|+
T Consensus       148 iG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~ga  227 (324)
T COG0111         148 IGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA  227 (324)
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCe
Confidence            9999999999999999999999999944332 2   34456789999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC-CCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK-ELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~-~L~~~~nv~  300 (300)
                      +|||+|||++||++||++||++|+|+||+||||++||++++ |||++|||+
T Consensus       228 ilIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~  278 (324)
T COG0111         228 ILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVI  278 (324)
T ss_pred             EEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeE
Confidence            99999999999999999999999999999999999999875 999999985

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-62  Score=453.48  Aligned_cols=273  Identities=27%  Similarity=0.378  Sum_probs=229.9

Q ss_pred             eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN   97 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d   97 (300)
                      ||+++.+..+.+...+.  +++.+++..+. . .+.+++ .+.++++|+++++ ..++++++++.+|+||+|++.|+|+|
T Consensus         2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~-~-~~~~~~-~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   75 (311)
T PRK08410          2 KIVILDAKTLGDKDLSV--FEEFGDFQIYP-T-TSPEEV-IERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTN   75 (311)
T ss_pred             eEEEEecCCCChhhHHH--HhhCceEEEeC-C-CCHHHH-HHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccc
Confidence            47777764334444444  66666654432 2 123344 4556899998875 56899999999999999999999999


Q ss_pred             CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCcccc-CcccccCCCEEEEEe
Q 022233           98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSL-GIGSKLGGKRVGIVG  176 (300)
Q Consensus        98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~-~~g~~l~g~~vgIiG  176 (300)
                      +||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|...   ..+... ..+++|.||||||||
T Consensus        76 ~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~~~~~~~L~gktvGIiG  152 (311)
T PRK08410         76 NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES---PIFTHISRPLGEIKGKKWGIIG  152 (311)
T ss_pred             cccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcC---CCccccCccccccCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999732   111000 014689999999999


Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +|+||+.+|+++++|||+|++|+++...........++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|
T Consensus       153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a  232 (311)
T PRK08410        153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG  232 (311)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence            99999999999999999999999975432222235689999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCC---CCCC
Q 022233          257 RGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXX---XXXX  300 (300)
Q Consensus       257 rg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~---~nv~  300 (300)
                      ||++||++||++||++|+|+ |+||||++||+++ +|||++   |||+
T Consensus       233 RG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~Nvi  279 (311)
T PRK08410        233 RGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLL  279 (311)
T ss_pred             CccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEE
Confidence            99999999999999999999 9999999999875 489987   8985

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.5e-61  Score=452.84  Aligned_cols=277  Identities=32%  Similarity=0.490  Sum_probs=237.5

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      |||||+++.+.  .+...+.  +++.+++..+... ..+.++ +.+.++++|+++++...++++++++++|+||||+++|
T Consensus         1 ~~~kil~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~   75 (333)
T PRK13243          1 MKPKVFITREI--PENGIEM--LEEHFEVEVWEDEREIPREV-LLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYA   75 (333)
T ss_pred             CCceEEEECCC--CHHHHHH--HhcCceEEEecCCCCCCHHH-HHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecC
Confidence            67899999875  4455545  7766665443221 123333 4455689999998766689999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCccc--CCCccccCcccccCCCE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA--EGDCYSLGIGSKLGGKR  171 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~~~~~g~~l~g~~  171 (300)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.....  ...+ ..  |.+|+|++
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~-~~--g~~L~gkt  152 (333)
T PRK13243         76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM-FL--GYDVYGKT  152 (333)
T ss_pred             ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc-cc--ccCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999973210  0001 12  78999999


Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      |||||+|+||+.+|++|++|||+|.+|+++.....    +. ...++++++++||+|++|+|++++|+++|+++.|+.||
T Consensus       153 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk  231 (333)
T PRK13243        153 IGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMK  231 (333)
T ss_pred             EEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCC
Confidence            99999999999999999999999999999764321    22 24689999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||+
T Consensus       232 ~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvi  284 (333)
T PRK13243        232 PTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVV  284 (333)
T ss_pred             CCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEE
Confidence            99999999999999999999999999999999999999999877999999985

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-60  Score=440.53  Aligned_cols=274  Identities=26%  Similarity=0.385  Sum_probs=226.2

Q ss_pred             eEEEECCCCC--CccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233           18 RVLLFKPPPD--FHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG   95 (300)
Q Consensus        18 ~vl~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G   95 (300)
                      ||+++....+  .+...+.  +++.+..+..... .+.++ +.+.++++|+++++ ..++++++++++|+||+|++.|+|
T Consensus         2 ~i~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~-~~~~~-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G   76 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSP--LEQAFDELQLHDA-TTPEQ-VAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATG   76 (317)
T ss_pred             eEEEEccccCCccccchhH--HHhhCCeEEEecC-CCHHH-HHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcc
Confidence            3777765321  1222333  5544422222222 12233 44556899988875 568999999999999999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV  175 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi  175 (300)
                      +|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|......... .. .+.+|.|||||||
T Consensus        77 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~~-~~~~l~gktvgIi  154 (317)
T PRK06487         77 TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL-DF-PIVELEGKTLGLL  154 (317)
T ss_pred             ccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc-cC-cccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999732100000 00 1468999999999


Q ss_pred             ecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233          176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~  255 (300)
                      |+|+||+.+|+++++|||+|++|++..... . ....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus       155 G~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~  232 (317)
T PRK06487        155 GHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT  232 (317)
T ss_pred             CCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence            999999999999999999999999864321 1 22458999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCC--CCCCC
Q 022233          256 GRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXX--XXXXX  300 (300)
Q Consensus       256 srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~--~~nv~  300 (300)
                      |||++||++||++||++|+|+||+||||++||+++ +|||.  +|||+
T Consensus       233 aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvi  280 (317)
T PRK06487        233 ARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLI  280 (317)
T ss_pred             CCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEE
Confidence            99999999999999999999999999999999876 48995  89985

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=7.3e-60  Score=438.01  Aligned_cols=239  Identities=26%  Similarity=0.417  Sum_probs=212.0

Q ss_pred             HHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhc
Q 022233           57 LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN  136 (300)
Q Consensus        57 l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~  136 (300)
                      +.+.++++|++++. ..++++++++++|+||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|+
T Consensus        38 ~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~  116 (314)
T PRK06932         38 TIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHS  116 (314)
T ss_pred             HHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhC
Confidence            34456799988874 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCCCCcccCCCcccc-CcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHH
Q 022233          137 ISASDRFVKQWLRPRQAAEGDCYSL-GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC  215 (300)
Q Consensus       137 ~~~~~~~~~~g~w~~~~~~~~~~~~-~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~  215 (300)
                      +..+++.+++|.|...   ..+... ..+.+|.|+||||||+|.||+.+|+++++|||+|++|++....... ..+.+++
T Consensus       117 ~~~~~~~~~~~~W~~~---~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~  192 (314)
T PRK06932        117 LMGWYRDQLSDRWATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE  192 (314)
T ss_pred             hHHHHHHHHcCCCCcC---ccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence            9999999999999732   111000 0146899999999999999999999999999999999976432211 1246899


Q ss_pred             HHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCC
Q 022233          216 ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELX  294 (300)
Q Consensus       216 e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~  294 (300)
                      |++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||
T Consensus       193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~  272 (314)
T PRK06932        193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI  272 (314)
T ss_pred             HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875 5898


Q ss_pred             ----CCCCCC
Q 022233          295 ----XXXXXX  300 (300)
Q Consensus       295 ----~~~nv~  300 (300)
                          ++|||+
T Consensus       273 ~~~~~~pnvi  282 (314)
T PRK06932        273 QAAKRLPNLL  282 (314)
T ss_pred             HhhcCCCCEE
Confidence                599985

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.6e-60  Score=452.24  Aligned_cols=271  Identities=23%  Similarity=0.316  Sum_probs=234.0

Q ss_pred             CCeEEEECCCCCCccccchhhhccc-C-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNK-F-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      ++||+++++.  .+...+.  +++. + ++.. .....+.++ +.+.++++|++++++..++++++++++|+||+|++.|
T Consensus        10 ~~~ili~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~~~~-~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~   83 (409)
T PRK11790         10 KIKFLLLEGV--HQSAVEV--LRAAGYTNIEY-HKGALDEEE-LIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFC   83 (409)
T ss_pred             CeEEEEECCC--CHHHHHH--HHhcCCceEEE-CCCCCCHHH-HHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECc
Confidence            3689998765  4554444  6554 5 4433 222223333 4455689999887766789999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|+|..   . .+  .  |.+|.|||||
T Consensus        84 ~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~---~-~~--~--~~~L~gktvG  155 (409)
T PRK11790         84 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNK---S-AA--G--SFEVRGKTLG  155 (409)
T ss_pred             eecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccc---c-cc--C--cccCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999972   1 11  2  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      |||+|+||+.+|+++++|||+|++||++..... +.....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|
T Consensus       156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~l  235 (409)
T PRK11790        156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAIL  235 (409)
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEE
Confidence            999999999999999999999999998754322 2334568999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-----CCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-----KELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-----~~L~~~~nv~  300 (300)
                      ||+|||++||++||++||++|+|+||+||||++||++.     +|||++|||+
T Consensus       236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvi  288 (409)
T PRK11790        236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI  288 (409)
T ss_pred             EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEE
Confidence            99999999999999999999999999999999999874     3899999985

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.4e-59  Score=445.57  Aligned_cols=276  Identities=25%  Similarity=0.365  Sum_probs=232.3

Q ss_pred             CCCeEEEECCCCCCcc-ccchhhhccc-CeEEEecC-C-CCChHHHHHhcc-CCcEEEEEeCCCCCCHHHHccCCC--cc
Q 022233           15 DLPRVLLFKPPPDFHL-FGDECFSSNK-FKFLKAWE-S-PLPLDQFLKTHA-QSVEAILSSGGAPVTAETLRLMPA--VR   87 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~-~-~~~~~~~l~~~~-~~~d~ii~~~~~~~~~e~l~~~p~--Lk   87 (300)
                      -|++|+++.+.  .+. ..+.  |.+. +++..+.. . ..+.++ +.+.+ +++|+++++...++++++++++|+  ||
T Consensus        14 ~~~~v~~~~~~--~~~~~~~~--L~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk   88 (386)
T PLN02306         14 GKYRVVSTKPM--PGTRWINL--LVDQDCRVEICTEKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFSALSKAGGK   88 (386)
T ss_pred             CCceEEEeCCC--CcHHHHHH--HHhcCceEEecCCcCCCCCHHH-HHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCce
Confidence            47889998876  332 3444  6554 66643221 1 123344 44444 579999987677899999999995  69


Q ss_pred             eEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCccccc
Q 022233           88 LVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKL  167 (300)
Q Consensus        88 ~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l  167 (300)
                      +|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+. . .+ ..  |.+|
T Consensus        89 ~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~-~-~~-~~--g~~L  163 (386)
T PLN02306         89 AFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL-P-HL-FV--GNLL  163 (386)
T ss_pred             EEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccc-c-cc-cC--CcCC
Confidence            999999999999999999999999999999999999999999999999999999999999985221 1 11 12  7789


Q ss_pred             CCCEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC-------C------------CcccCCHHHHhhcCCEEEEe
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV-------S------------YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~-------~------------~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .|+||||||+|+||+.+|++++ +|||+|++||++.....       +            .....+++|++++||+|++|
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh  243 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH  243 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence            9999999999999999999985 99999999998753210       0            11235899999999999999


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++||++|||+
T Consensus       244 ~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVi  316 (386)
T PLN02306        244 PVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAV  316 (386)
T ss_pred             CCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEE
Confidence            9999999999999999999999999999999999999999999999999999999999998777899999985

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.8e-59  Score=440.69  Aligned_cols=272  Identities=25%  Similarity=0.405  Sum_probs=229.7

Q ss_pred             cCCCCCeEEEECCCCCCccccch--hhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceE
Q 022233           12 ESQDLPRVLLFKPPPDFHLFGDE--CFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLV   89 (300)
Q Consensus        12 ~~~~kp~vl~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I   89 (300)
                      .+++|||||++++.  .+.....  +.+ +.+.++.+..  .+.++ +.+.++++|+++++ ..++++++++.+|+||||
T Consensus        14 ~~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~--~~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I   86 (347)
T PLN02928         14 SDMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDA--VARED-VPDVIANYDICVPK-MMRLDADIIARASQMKLI   86 (347)
T ss_pred             CCCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecC--CCHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEE
Confidence            36788899999876  3322111  113 3343333221  12334 34556899998874 568999999999999999


Q ss_pred             EEcCCCCCCCChhHHhhCCeEEEeCCCC---CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccc
Q 022233           90 MTTSAGLNHVDIAECRRRGITVANAGNV---FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK  166 (300)
Q Consensus        90 ~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~  166 (300)
                      ++.|+|+|+||++++.++||.|+|+|++   ++.+||||++++||+++|++..+++.+++|.|..        +.  +.+
T Consensus        87 ~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--------~~--~~~  156 (347)
T PLN02928         87 MQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--------PI--GDT  156 (347)
T ss_pred             EECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--------cc--ccC
Confidence            9999999999999999999999999985   7899999999999999999999999999999961        12  678


Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C---------------CcccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S---------------YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~---------------~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      |.|+||||||+|.||+.+|++|++|||+|++|+|+..... .               .....++++++++||+|++|+|+
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl  236 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL  236 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence            9999999999999999999999999999999998743211 0               11356899999999999999999


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      |++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||+
T Consensus       237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nvi  307 (347)
T PLN02928        237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVI  307 (347)
T ss_pred             ChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999875 4899999985

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=9e-59  Score=438.91  Aligned_cols=257  Identities=26%  Similarity=0.401  Sum_probs=223.6

Q ss_pred             hccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEe
Q 022233           37 SSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN  113 (300)
Q Consensus        37 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  113 (300)
                      |++. ++++...+.+.+ ++.+.+.++++|++++..  ..++++++++++|+||||++.|+|+||||+++|.++||.|+|
T Consensus        71 l~~~g~~~v~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n  149 (386)
T PLN03139         71 LESQGHQYIVTDDKEGP-DCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE  149 (386)
T ss_pred             HHhcCCeEEEeCCCCCC-HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence            5555 455543332223 334455668999999753  247999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC
Q 022233          114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC  193 (300)
Q Consensus       114 ~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~  193 (300)
                      +||+++.+||||++++||++.|++..+++.+++|.|...   ... ..  +++|.|++|||||+|+||+.+|++|++|||
T Consensus       150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~---~~~-~~--~~~L~gktVGIVG~G~IG~~vA~~L~afG~  223 (386)
T PLN03139        150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA---GIA-YR--AYDLEGKTVGTVGAGRIGRLLLQRLKPFNC  223 (386)
T ss_pred             CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc---ccc-CC--CcCCCCCEEEEEeecHHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999721   111 12  678999999999999999999999999999


Q ss_pred             EEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          194 SISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       194 ~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      +|.+||++..+.     .++....+++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++
T Consensus       224 ~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~  303 (386)
T PLN03139        224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVAD  303 (386)
T ss_pred             EEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHH
Confidence            999999875321     133445689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          269 CLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       269 aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      ||++|+|+||+||||++||+++ +|||++|||+
T Consensus       304 AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvi  336 (386)
T PLN03139        304 ACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHA  336 (386)
T ss_pred             HHHcCCceEEEEcCCCCCCCCCCChhhcCCCeE
Confidence            9999999999999999999875 5899999985

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=9.6e-59  Score=438.95  Aligned_cols=257  Identities=28%  Similarity=0.439  Sum_probs=223.9

Q ss_pred             hccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEe
Q 022233           37 SSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN  113 (300)
Q Consensus        37 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  113 (300)
                      +++. ++++...+.+.+ ++.+.+.++++|++++..  ..++++++++++|+||||++.|+|+||||+++|+++||.|+|
T Consensus        64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n  142 (385)
T PRK07574         64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE  142 (385)
T ss_pred             HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence            5555 565543222222 333455668999999853  357999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC
Q 022233          114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC  193 (300)
Q Consensus       114 ~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~  193 (300)
                      ++++++.+||||++++||++.|++..+++.+++|.|...   ... ..  +++|.|++|||||+|+||+.+|++|++|||
T Consensus       143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~---~~~-~~--~~~L~gktVGIvG~G~IG~~vA~~l~~fG~  216 (385)
T PRK07574        143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIA---DCV-SR--SYDLEGMTVGIVGAGRIGLAVLRRLKPFDV  216 (385)
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc---ccc-cc--ceecCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999731   111 12  678999999999999999999999999999


Q ss_pred             EEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          194 SISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       194 ~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      +|++|||+..+.     .+...+.+++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++
T Consensus       217 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~  296 (385)
T PRK07574        217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR  296 (385)
T ss_pred             EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH
Confidence            999999976321     233445789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          269 CLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       269 aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      ||++|+|+||+||||++||+++ +|||++|||+
T Consensus       297 AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvi  329 (385)
T PRK07574        297 ALESGHLAGYAGDVWFPQPAPADHPWRTMPRNG  329 (385)
T ss_pred             HHHhCCccEEEEecCCCCCCCCCChHHhCCCeE
Confidence            9999999999999999999875 4999999985

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=6.2e-58  Score=451.55  Aligned_cols=268  Identities=29%  Similarity=0.428  Sum_probs=232.7

Q ss_pred             eEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL   96 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~   96 (300)
                      |||++.+.  .+...+.  +++. +++.. . ...+.+++ .+.++++|++++++..++++++++++|+||||++.|+|+
T Consensus         1 ~vli~~~~--~~~~~~~--l~~~~~~~~~-~-~~~~~~~~-~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   73 (525)
T TIGR01327         1 KVLIADPI--SPDGIDI--LEDVGVEVDV-Q-TGLSREEL-LEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGV   73 (525)
T ss_pred             CEEEeCCC--CHHHHHH--HHhcCcEEEe-C-CCCCHHHH-HHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCccc
Confidence            47888775  4555444  6554 45543 2 22233444 455689999998777789999999999999999999999


Q ss_pred             CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233           97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG  176 (300)
Q Consensus        97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG  176 (300)
                      ||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|+|.+   . .+  .  |.+|.||||||||
T Consensus        74 d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~-~~--~--g~~l~gktvgIiG  145 (525)
T TIGR01327        74 DNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---K-AF--M--GTELYGKTLGVIG  145 (525)
T ss_pred             chhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---c-cc--C--ccccCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999972   2 12  2  7899999999999


Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      +|+||+.+|++|++|||+|++||++....    .+.....+++|++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus       146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l  225 (525)
T TIGR01327       146 LGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVII  225 (525)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEE
Confidence            99999999999999999999999863321    13333458999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ||+|||++||++||++||++|+|+||+||||++||++++|||++|||+
T Consensus       226 IN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  273 (525)
T TIGR01327       226 VNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI  273 (525)
T ss_pred             EEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence            999999999999999999999999999999999997777999999985

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-58  Score=417.73  Aligned_cols=267  Identities=26%  Similarity=0.398  Sum_probs=236.9

Q ss_pred             eEEEECCCCCCccccchhhhcccC-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHc-cCCCcceEEEcCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKF-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLR-LMPAVRLVMTTSAG   95 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~-~~p~Lk~I~~~~~G   95 (300)
                      +||++.+.  .+.-.+.  +++.+ ++..+.+.  ..+|. ...++++|++++++.+++++++++ ...+||+|++.++|
T Consensus         8 ~il~~e~~--~~~~~~~--l~~~g~~v~~~~~~--~~eel-~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESL--DQACIEI--LKDNGYQVEFKKNL--SLEEL-IEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIG   80 (406)
T ss_pred             eEEEeccc--chHHHHH--HHhcCceEEEeccC--CHHHH-HHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccC
Confidence            89999887  5655666  88877 55443332  24444 445689999999999999999999 55699999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV  175 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi  175 (300)
                      +||||+++|.++||.|.|+|.+|+.++||+++++++++.|++++....+++|+|.+   . .|  +  |.+|+|||+||+
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~-~~--~--G~el~GKTLgvl  152 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---V-KY--L--GWELRGKTLGVL  152 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---c-ce--e--eeEEeccEEEEe
Confidence            99999999999999999999999999999999999999999999999999999982   2 23  3  899999999999


Q ss_pred             ecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233          176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV  251 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~  251 (300)
                      |+|+||+.+|++++.+||+|++||+......    +. ...+++|++..||||++|+|++|+|+++++.+.|++||+|..
T Consensus       153 G~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gv-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVr  231 (406)
T KOG0068|consen  153 GLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGV-QLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVR  231 (406)
T ss_pred             ecccchHHHHHHHHhcCceEEeecCCCchHHHHhccc-eeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcE
Confidence            9999999999999999999999987654322    33 356899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC---CCCCCCCCCC
Q 022233          252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP---KELXXXXXXX  300 (300)
Q Consensus       252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~---~~L~~~~nv~  300 (300)
                      +||+|||++||++||++||++|+++||++|||++||+..   ..|.++|||+
T Consensus       232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi  283 (406)
T KOG0068|consen  232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVI  283 (406)
T ss_pred             EEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCcee
Confidence            999999999999999999999999999999999999874   4799999985

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.8e-57  Score=445.29  Aligned_cols=267  Identities=30%  Similarity=0.413  Sum_probs=232.4

Q ss_pred             eEEEECCCCCCccccchhhhccc--CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK--FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG   95 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G   95 (300)
                      |||++.+.  .+...+.  |++.  +++.. . ...+.+++ .+.++++|++++++..++++++++++|+||||++.|+|
T Consensus         2 ~ili~~~~--~~~~~~~--l~~~~~~~v~~-~-~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G   74 (526)
T PRK13581          2 KVLVSDPI--SPAGLEI--LKDAPGVEVDV-K-TGLDKEEL-LEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG   74 (526)
T ss_pred             eEEEeCCC--CHHHHHH--HhccCCeEEEe-C-CCCCHHHH-HHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence            68888775  4444444  6664  45442 1 22233444 45568999999877778999999999999999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV  175 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi  175 (300)
                      +||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+   . .+  .  |.+|.||+||||
T Consensus        75 ~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~---~-~~--~--g~~l~gktvgIi  146 (526)
T PRK13581         75 VDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWER---K-KF--M--GVELYGKTLGII  146 (526)
T ss_pred             cccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCc---c-Cc--c--ccccCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999972   1 12  2  788999999999


Q ss_pred             ecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233          176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV  251 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~  251 (300)
                      |+|+||+.+|++|++|||+|++||++....    .+... .+++|++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus       147 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~  225 (526)
T PRK13581        147 GLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVR  225 (526)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeE
Confidence            999999999999999999999999864321    13333 3899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      |||+|||++||++||++||++|+|+||+||||++||++++|||++|||+
T Consensus       226 lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        226 IINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             EEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            9999999999999999999999999999999999998777999999985

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-55  Score=412.17  Aligned_cols=273  Identities=17%  Similarity=0.328  Sum_probs=227.0

Q ss_pred             CeEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC--CcceEEEcC
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTS   93 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p--~Lk~I~~~~   93 (300)
                      .||++.+--+...++... ++++. +++.. ..... .++. .+.++++|++++++..++++++++++|  +||+|++.|
T Consensus         2 ~~i~~~~~~~~e~~~~~~-~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~   77 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALN-WGKKNNVEVTT-SKELL-SSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRT   77 (330)
T ss_pred             cEEEEEeCcHHHHHHHHH-HHHhcCeEEEE-cCCCC-CHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecc
Confidence            367777554323333333 23333 23222 22222 2333 456689999998776789999999997  899999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|.+   ...  ..  +.+|+|++||
T Consensus        78 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w---~~~--~~--~~~l~g~~Vg  150 (330)
T PRK12480         78 AGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTW---QAE--IM--SKPVKNMTVA  150 (330)
T ss_pred             cccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccc---ccc--cC--ccccCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999997752   111  12  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC-CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      |||+|.||+++|++|+++|++|.+|+++...... .....++++++++||+|++|+|++++|+++++++.|+.||+|++|
T Consensus       151 IIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavl  230 (330)
T PRK12480        151 IIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAIL  230 (330)
T ss_pred             EECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEE
Confidence            9999999999999999999999999987654322 223458999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----------C----CCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV----------P----KELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~----------~----~~L~~~~nv~  300 (300)
                      ||+|||++||++||++||++|+|+||+||||++||+.          +    .|||++|||+
T Consensus       231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvi  292 (330)
T PRK12480        231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERIL  292 (330)
T ss_pred             EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEE
Confidence            9999999999999999999999999999999999962          1    2699999985

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=2.4e-55  Score=410.96  Aligned_cols=274  Identities=19%  Similarity=0.302  Sum_probs=231.8

Q ss_pred             CCCCeEEEECCCCCCccccchhhhcccCeEEE-ecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC--cceEE
Q 022233           14 QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLK-AWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVM   90 (300)
Q Consensus        14 ~~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~--Lk~I~   90 (300)
                      +||++|+++.+.  ..++.+.  +.+.+++.. .+.... .++.+ +.++++|+++++...++++++++++|+  ||+|+
T Consensus         1 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~-~~e~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~   74 (332)
T PRK08605          1 MTKIKIMSVRDE--DAPYIKA--WAEKHHVEVDLTKEAL-TDDNV-EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIA   74 (332)
T ss_pred             CcEEEEEecCHH--HHHHHHH--HHHhcCeEEEEecCCC-CHHHH-HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence            478889999875  4555555  555555432 122222 23433 456799999987778999999999997  99999


Q ss_pred             EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCC
Q 022233           91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK  170 (300)
Q Consensus        91 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~  170 (300)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.+   ...  ..  |++|+|+
T Consensus        75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---~~~--~~--~~~l~g~  147 (332)
T PRK08605         75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW---EPP--IL--SRSIKDL  147 (332)
T ss_pred             EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc---ccc--cc--cceeCCC
Confidence            9999999999999999999999999999999999999999999999999999999998852   111  12  7889999


Q ss_pred             EEEEEecChhHHHHHHHH-HhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          171 RVGIVGLGSIGSLVAKRL-DAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l-~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      +|||||+|.||+++|++| ++||++|++||++.....  ......++++++++||+|++|+|++++|+++++++.++.||
T Consensus       148 ~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk  227 (332)
T PRK08605        148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFK  227 (332)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCC
Confidence            999999999999999999 789999999998764321  22334589999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCC------------CCCCCCCCC
Q 022233          248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD--VPK------------ELXXXXXXX  300 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~--~~~------------~L~~~~nv~  300 (300)
                      +|++|||+|||.++|+++|+++|++|+|+||+||||+.||+  +.+            +||++|||+
T Consensus       228 ~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvi  294 (332)
T PRK08605        228 KGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVI  294 (332)
T ss_pred             CCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEE
Confidence            99999999999999999999999999999999999999983  211            499999985

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=4.8e-55  Score=401.92  Aligned_cols=229  Identities=44%  Similarity=0.721  Sum_probs=206.6

Q ss_pred             EEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHH
Q 022233           66 AILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFV  144 (300)
Q Consensus        66 ~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~  144 (300)
                      ++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|++++++|||++++++|.++|++..+++.+
T Consensus        64 ~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~  143 (336)
T KOG0069|consen   64 AISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMV  143 (336)
T ss_pred             eeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            344444456778888766 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC---cccCCHHHHhhc
Q 022233          145 KQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY---PFYSNVCELAAN  220 (300)
Q Consensus       145 ~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~---~~~~~l~e~l~~  220 (300)
                      ++|.|.   ....+ ++  |..+.||||||+|+|+||+.+|++|++||+.+.|++|++.+.. ..   ....++++++.+
T Consensus       144 ~~g~w~---~~~~~-~~--g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~  217 (336)
T KOG0069|consen  144 RNGGWG---WAGGW-PL--GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLAN  217 (336)
T ss_pred             hcCCcc---ccCCc-cc--cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhh
Confidence            999994   23344 45  8999999999999999999999999999988999999765432 11   224599999999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ||+|++|||+|++|+|+||++.+.+||+|+++||++||.++|++++++||++|+|++||||||++||.++++|++++||+
T Consensus       218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv  297 (336)
T KOG0069|consen  218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVV  297 (336)
T ss_pred             CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999996678999999984

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.4e-53  Score=400.65  Aligned_cols=244  Identities=25%  Similarity=0.376  Sum_probs=207.3

Q ss_pred             eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN   97 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d   97 (300)
                      |||+...++   ...+.  +.+.+++......+.+. +    .++++|++++++.+++++++++ .|+||+|+++++|+|
T Consensus         2 kIl~d~~~~---~~~~~--~~~~~ev~~~~~~~~~~-~----~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D   70 (378)
T PRK15438          2 KILVDENMP---YAREL--FSRLGEVKAVPGRPIPV-A----QLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTD   70 (378)
T ss_pred             EEEEeCCcc---hHHHH--HhhcCcEEEeCCCCCCH-H----HhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECccccc
Confidence            688886653   22223  55556765532222222 2    2478999999888899999996 699999999999999


Q ss_pred             CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEec
Q 022233           98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL  177 (300)
Q Consensus        98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~  177 (300)
                      |||+++++++||.|+|+||+++.+||||++++||++.|+.                          |.+|.|+||||||+
T Consensus        71 ~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------------g~~L~gktvGIIG~  124 (378)
T PRK15438         71 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------------GFSLHDRTVGIVGV  124 (378)
T ss_pred             ccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------------CCCcCCCEEEEECc
Confidence            9999999999999999999999999999999999988851                          33588999999999


Q ss_pred             ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChh----hhhcchHHHHhcCCCCcEEE
Q 022233          178 GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGVVI  253 (300)
Q Consensus       178 G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~----t~~li~~~~l~~mk~ga~lI  253 (300)
                      |+||+.+|++|++|||+|++||+..........+.++++++++||+|++|+|+|++    |+++|+++.|+.||+|++||
T Consensus       125 G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI  204 (378)
T PRK15438        125 GNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI  204 (378)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE
Confidence            99999999999999999999997543222112356899999999999999999996    99999999999999999999


Q ss_pred             EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCC
Q 022233          254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXX  298 (300)
Q Consensus       254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~n  298 (300)
                      |+|||++||++||+++|++|++.+|+||||++||.++.+||..++
T Consensus       205 N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~  249 (378)
T PRK15438        205 NACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD  249 (378)
T ss_pred             ECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC
Confidence            999999999999999999999999999999999987778887654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=3.9e-52  Score=393.40  Aligned_cols=246  Identities=23%  Similarity=0.367  Sum_probs=208.1

Q ss_pred             CeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL   96 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~   96 (300)
                      .||++-+.+|+..++     +++..++........+     .+.++++|++++++.+++++++++. |+||+|+++++|+
T Consensus         1 mkI~~d~~~p~~~~~-----~~~~~~v~~~~~~~~~-----~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~   69 (381)
T PRK00257          1 MKIVADENIPLLDAF-----FAGFGEIRRLPGRAFD-----RAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGT   69 (381)
T ss_pred             CEEEEecCchhHHHH-----HhhCCcEEEcCCcccC-----HHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccc
Confidence            378888777433222     4444455432211111     2234789999988888999999984 8999999999999


Q ss_pred             CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233           97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG  176 (300)
Q Consensus        97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG  176 (300)
                      ||||+++++++||.|+|+||+++.+||||+++++|++.|+             .             |.+|.|+||||||
T Consensus        70 D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-------------~-------------g~~l~gktvGIIG  123 (381)
T PRK00257         70 DHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------------E-------------GVDLAERTYGVVG  123 (381)
T ss_pred             cccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------------c-------------CCCcCcCEEEEEC
Confidence            9999999999999999999999999999999999998874             1             4468899999999


Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCCh----hhhhcchHHHHhcCCCCcEE
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTA----ETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~----~t~~li~~~~l~~mk~ga~l  252 (300)
                      +|+||+.+|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+    .|+++|+++.|+.||+|++|
T Consensus       124 ~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gail  203 (381)
T PRK00257        124 AGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWL  203 (381)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEE
Confidence            99999999999999999999999864433222345689999999999999999998    59999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ||+|||++||++||+++|++|++.+|+||||++||.++++||+. ||+
T Consensus       204 IN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi  250 (381)
T PRK00257        204 INASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTI  250 (381)
T ss_pred             EECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEE
Confidence            99999999999999999999999999999999999877788885 763

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=4.9e-52  Score=384.97  Aligned_cols=225  Identities=23%  Similarity=0.300  Sum_probs=198.6

Q ss_pred             CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhH-----HhhCCeEEEeCCC-CCchhHHHHHHHHHHHHhh
Q 022233           62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAE-----CRRRGITVANAGN-VFSEDVADLAVGLLIDLLR  135 (300)
Q Consensus        62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~p~-~~~~~vAE~~l~l~L~~~R  135 (300)
                      +++|+++++.   .+.+.++ .|+||||++.|+|+|++|...     +..+||.|+|+++ .++.+||||++++||++.|
T Consensus        37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r  112 (312)
T PRK15469         37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR  112 (312)
T ss_pred             ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence            5789988864   2567776 589999999999999998332     3458999999864 6899999999999999999


Q ss_pred             chHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccC
Q 022233          136 NISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYS  212 (300)
Q Consensus       136 ~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~  212 (300)
                      ++..+.+.+++|.|..   .    +   +.+++|+||||||+|.||+.+|++|++|||+|.+|+++.+...+.   ....
T Consensus       113 ~~~~~~~~~~~~~w~~---~----~---~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~  182 (312)
T PRK15469        113 RFDDYQALQNSSHWQP---L----P---EYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGRE  182 (312)
T ss_pred             ChHHHHHHHHhCCcCC---C----C---CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccc
Confidence            9999999999999972   1    1   457899999999999999999999999999999999876543222   2246


Q ss_pred             CHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-C
Q 022233          213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-K  291 (300)
Q Consensus       213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~  291 (300)
                      ++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +
T Consensus       183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~  262 (312)
T PRK15469        183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES  262 (312)
T ss_pred             cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999875 4


Q ss_pred             CCCCCCCCC
Q 022233          292 ELXXXXXXX  300 (300)
Q Consensus       292 ~L~~~~nv~  300 (300)
                      |||++|||+
T Consensus       263 pl~~~~nvi  271 (312)
T PRK15469        263 PLWQHPRVA  271 (312)
T ss_pred             hhhcCCCeE
Confidence            899999985

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-51  Score=378.84  Aligned_cols=218  Identities=28%  Similarity=0.364  Sum_probs=193.2

Q ss_pred             CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHH
Q 022233           62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD  141 (300)
Q Consensus        62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~  141 (300)
                      .++|++++.. .      +..+|+||||++.|+|+|+||+++|++++|.++|. +.++.+||||++++||++.|+++.++
T Consensus        33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~  104 (303)
T PRK06436         33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN  104 (303)
T ss_pred             CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence            4678876533 2      23468999999999999999999999998888775 78899999999999999999999999


Q ss_pred             HHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCc-ccCCHHHHhhc
Q 022233          142 RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP-FYSNVCELAAN  220 (300)
Q Consensus       142 ~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~-~~~~l~e~l~~  220 (300)
                      +.+++|+|..   .     .  +.+|+|++|||||+|+||+.+|+++++|||+|++|+|+..+. +.. .+.++++++++
T Consensus       105 ~~~~~g~w~~---~-----~--~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~  173 (303)
T PRK06436        105 YNMKNGNFKQ---S-----P--TKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKK  173 (303)
T ss_pred             HHHHcCCCCC---C-----C--CCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhh
Confidence            9999999982   1     1  568999999999999999999999999999999999975432 222 25689999999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|++.+|+||||++||++++.  .+|||+
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nvi  251 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVI  251 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999986543  678874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=8.3e-44  Score=305.52  Aligned_cols=167  Identities=35%  Similarity=0.523  Sum_probs=145.3

Q ss_pred             HHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC
Q 022233          127 VGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV  206 (300)
Q Consensus       127 l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~  206 (300)
                      +++||++.|+++.+++.+++|.|.   ....  ..  +++++|+||||||+|+||+.+|+++++|||+|++|+|+..+..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~---~~~~--~~--~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWA---SRER--FP--GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHH---HHTT--TT--BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCC---CCcC--CC--ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            689999999999999999999992   0111  22  7899999999999999999999999999999999999876432


Q ss_pred             ----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          207 ----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       207 ----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                          ....+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+|||
T Consensus        74 ~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV  153 (178)
T PF02826_consen   74 GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV  153 (178)
T ss_dssp             HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred             hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence                1224579999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCCCCCCC
Q 022233          283 FENEPDVPK-ELXXXXXXX  300 (300)
Q Consensus       283 ~~~EP~~~~-~L~~~~nv~  300 (300)
                      |++||+++. |||++|||+
T Consensus       154 ~~~EP~~~~~~l~~~~nvi  172 (178)
T PF02826_consen  154 FEPEPLPADSPLWDLPNVI  172 (178)
T ss_dssp             -SSSSSSTTHHHHTSTTEE
T ss_pred             CCCCCCCCCChHHcCCCEE
Confidence            999999876 999999984

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.95  E-value=1.2e-28  Score=225.33  Aligned_cols=234  Identities=21%  Similarity=0.341  Sum_probs=197.9

Q ss_pred             HHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHH
Q 022233           54 DQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDL  133 (300)
Q Consensus        54 ~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~  133 (300)
                      .+..++.+.++-+-+......++++.++++.-||++...+.|+|++|+.+|.+-||.|||.|+..-+.+|+.++.+||++
T Consensus        64 qeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l  143 (435)
T KOG0067|consen   64 QEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNL  143 (435)
T ss_pred             HHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhh
Confidence            34444444444333444566799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHhCCCCCcccCC-CccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----CCCC
Q 022233          134 LRNISASDRFVKQWLRPRQAAEG-DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----SVSY  208 (300)
Q Consensus       134 ~R~~~~~~~~~~~g~w~~~~~~~-~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----~~~~  208 (300)
                      +|+.++..+.+++|.|.+..... .. . +....++|.++|++|+|+.|++++.++++||+.|+.||+....    ..+.
T Consensus       144 ~rrntw~cq~l~eg~~~q~~~q~~e~-a-~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~  221 (435)
T KOG0067|consen  144 YRRNTWLCQALREGTCTQGLEQVREA-A-CGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGL  221 (435)
T ss_pred             hcccchhhhhhcccceeechhhhhhh-h-hccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhccc
Confidence            99999999999999997432111 11 1 1135689999999999999999999999999999999987543    2355


Q ss_pred             cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          209 PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       209 ~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      .+..+++|++-++|.+++||-+++.++++|+.-..++|+.|++++|++||.++|+++|.++|++|++.+++=.-|..-|+
T Consensus       222 ~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa~~~~~~~~l  301 (435)
T KOG0067|consen  222 QRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRSFKQGPL  301 (435)
T ss_pred             ceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceecccCcccccccc
Confidence            66778999999999999999999999999999999999999999999999999999999999999999888222444444


Q ss_pred             C
Q 022233          289 V  289 (300)
Q Consensus       289 ~  289 (300)
                      .
T Consensus       302 ~  302 (435)
T KOG0067|consen  302 K  302 (435)
T ss_pred             c
Confidence            3

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=6.3e-22  Score=190.51  Aligned_cols=167  Identities=19%  Similarity=0.295  Sum_probs=136.5

Q ss_pred             EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccC
Q 022233           90 MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLG  168 (300)
Q Consensus        90 ~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~  168 (300)
                      =-+++|+..+ -+....+-+|+|+|+|++++.+++|+++++++++.      +..+|.+                +..+.
T Consensus       196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------------~~~La  253 (476)
T PTZ00075        196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------------DVMIA  253 (476)
T ss_pred             ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------------CCCcC
Confidence            3457888775 23333446899999999999999999999999987      3334433                33588


Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      |++++|+|+|.||+.+|+++++||++|+++++.+...     .++. ..+++++++.||+|++|+    .+.++|+++.|
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~  328 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHM  328 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHH
Confidence            9999999999999999999999999999997764332     1332 357999999999999985    36889999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP  290 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~  290 (300)
                      +.||+|+++||+||+   |++.++++|+.+.    ++||++.||...
T Consensus       329 ~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        329 RRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             hccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            999999999999999   7888889998754    699999999754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.84  E-value=7.2e-21  Score=174.81  Aligned_cols=164  Identities=21%  Similarity=0.250  Sum_probs=132.1

Q ss_pred             CCCHHHHccCCCcceEEEcCCCCCCCChh-HHhhCCeEEE------eCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHh
Q 022233           74 PVTAETLRLMPAVRLVMTTSAGLNHVDIA-ECRRRGITVA------NAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ  146 (300)
Q Consensus        74 ~~~~e~l~~~p~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~  146 (300)
                      ++++++++.+|   .++...+|+++.|++ +|+++||+|+      |++.+|+.++||.++++++..             
T Consensus        81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~-------------  144 (287)
T TIGR02853        81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH-------------  144 (287)
T ss_pred             cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------------
Confidence            46789999888   377788999999999 8999999999      898999999999999877741             


Q ss_pred             CCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc--ccCCHHHHhh
Q 022233          147 WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP--FYSNVCELAA  219 (300)
Q Consensus       147 g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~--~~~~l~e~l~  219 (300)
                         .             +.+++|++++|+|+|.||+.+|++|+++|++|++++|+.+..     .+..  ...++.++++
T Consensus       145 ---~-------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~  208 (287)
T TIGR02853       145 ---T-------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA  208 (287)
T ss_pred             ---c-------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc
Confidence               0             235789999999999999999999999999999999986532     1221  2346788899


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCceEE
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP-IIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~-~vd~~aL~~aL~~~~i~~a  278 (300)
                      ++|+|++++|..     +++++.++.|++++++||++..+ -+|-    ++.++..+...
T Consensus       209 ~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~a~  259 (287)
T TIGR02853       209 EIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIKAL  259 (287)
T ss_pred             cCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCEEE
Confidence            999999999864     57888999999999999998754 2343    44455565533

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.74  E-value=4.5e-18  Score=138.95  Aligned_cols=101  Identities=27%  Similarity=0.423  Sum_probs=81.3

Q ss_pred             EEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCC
Q 022233           19 VLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH   98 (300)
Q Consensus        19 vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~   98 (300)
                      ||+++++  .++..+.  |++.+++.. .. ..+ ++.+.+.++++|+++++...++++++++.+|+||||++.|+|+|+
T Consensus         1 ili~~~~--~~~~~~~--l~~~~~v~~-~~-~~~-~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   73 (133)
T PF00389_consen    1 ILITDPL--PDEEIER--LEEGFEVEF-CD-SPS-EEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN   73 (133)
T ss_dssp             EEESSS---SHHHHHH--HHHTSEEEE-ES-SSS-HHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT
T ss_pred             eEEeccC--CHHHHHH--HHCCceEEE-eC-CCC-HHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc
Confidence            6888887  5767767  888566654 33 323 344455668999999977667999999999999999999999999


Q ss_pred             CChhHHhhCCeEEEeCCCCCchhHHHHH
Q 022233           99 VDIAECRRRGITVANAGNVFSEDVADLA  126 (300)
Q Consensus        99 id~~~~~~~gI~v~n~p~~~~~~vAE~~  126 (300)
                      ||+++|+++||.|+|+||+++.+||||+
T Consensus        74 id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   74 IDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            9999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.67  E-value=5.9e-16  Score=142.97  Aligned_cols=163  Identities=19%  Similarity=0.268  Sum_probs=127.4

Q ss_pred             hccCCcEEEEEeC----------------CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCC-----
Q 022233           59 THAQSVEAILSSG----------------GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNV-----  117 (300)
Q Consensus        59 ~~~~~~d~ii~~~----------------~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~-----  117 (300)
                      +.++++|+|+..-                ...++++.++.+|++..+. .|.+.++++ +.++++||.+.+....     
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            3356899888631                1124788999999987444 599999988 8899999999998754     


Q ss_pred             -CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEE
Q 022233          118 -FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS  196 (300)
Q Consensus       118 -~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~  196 (300)
                       ++.++||.++.+.+.   +                     +     +..+.|++++|||+|.+|+.+++.|+.+|++|+
T Consensus       129 ~ns~~~aegav~~a~~---~---------------------~-----~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~  179 (296)
T PRK08306        129 LNSIPTAEGAIMMAIE---H---------------------T-----PITIHGSNVLVLGFGRTGMTLARTLKALGANVT  179 (296)
T ss_pred             hccHhHHHHHHHHHHH---h---------------------C-----CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence             888889987765331   0                     0     234679999999999999999999999999999


Q ss_pred             EECCCCCCC-----CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          197 YNSRTKKPS-----VSYP--FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       197 ~~~~~~~~~-----~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +++|++...     .+..  ...++.+.++++|+|+.++|.     .+++++.++.|++++++||++.
T Consensus       180 v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        180 VGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             EEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            999986431     1222  224677889999999999884     4578899999999999999985

>PLN02494 adenosylhomocysteinase

Probab=99.64  E-value=6.4e-16  Score=148.85  Aligned_cols=116  Identities=20%  Similarity=0.263  Sum_probs=100.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++++...     .++. ..+++++++.+|+|+.+    ..++++++.
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            3789999999999999999999999999999998876431     1333 34789999999999974    356788999


Q ss_pred             HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCceEEEeeCCCCCC
Q 022233          241 QVLSALGKEGVVINIGR-GPIIDEQELVRC--LVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~sr-g~~vd~~aL~~a--L~~~~i~~a~LDV~~~EP  287 (300)
                      +.|+.||+|++++|+|| +..||+.+|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  8999997 9999999763

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.58  E-value=9.2e-15  Score=133.24  Aligned_cols=110  Identities=23%  Similarity=0.300  Sum_probs=99.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~  241 (300)
                      ++||+||+|.||.+||++|...|+.|.+|||++++.      .+.....+..|+.+++|+|++++|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            489999999999999999999999999999998762      2566778899999999999999999999999885  57


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      +++.+|+|.++||+|+.++...+.+.++++++.+.  .||
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD  118 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD  118 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence            89999999999999999999999999999999874  355

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.55  E-value=8e-15  Score=123.93  Aligned_cols=107  Identities=20%  Similarity=0.389  Sum_probs=87.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch-HHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN-KQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~-~~~l  243 (300)
                      ++|||||+|.||+.||++|...|++|.+|||+++..     .+.....++.|++++||+|++++|..++++.++. .+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999986542     2456678999999999999999999898888763 2278


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.+++|.++||++...+-....+.+.+++..+.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR  114 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence            889999999999999999999999999987763

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.54  E-value=2.1e-14  Score=132.35  Aligned_cols=88  Identities=20%  Similarity=0.286  Sum_probs=75.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ..|+|+||||||+|+||+++|++|+++|++|+++++.....     .+.. ..+++|++++||+|++++|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            45999999999999999999999999999999887653321     1333 35899999999999999997 67799999


Q ss_pred             HHHHhcCCCCcEEEE
Q 022233          240 KQVLSALGKEGVVIN  254 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn  254 (300)
                      ++.++.||+|++|+-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.54  E-value=2.9e-14  Score=136.19  Aligned_cols=115  Identities=22%  Similarity=0.269  Sum_probs=98.9

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+.|++|+|+|+|.||+.+|++++++|++|+++++++...     .++ ...+++++++.+|+|+.+..    +.++|+.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            4789999999999999999999999999999998765432     133 23468899999999988653    5778899


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          241 QVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      +.+..||+|++++|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999999887777899999884

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.42  E-value=6.6e-13  Score=122.24  Aligned_cols=106  Identities=11%  Similarity=0.249  Sum_probs=90.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc-h-HHHH
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI-N-KQVL  243 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li-~-~~~l  243 (300)
                      +|||||+|.||+.+|++|...|++|.+|+++++..     .+.....+..+++++||+|++++|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            58999999999999999999999999999986532     133345688899999999999999988887765 2 3467


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.+++|.++||+++..+.+.+++.+.++++.+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            889999999999999999999999999987654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.41  E-value=9.4e-13  Score=121.41  Aligned_cols=118  Identities=21%  Similarity=0.294  Sum_probs=96.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||+.+|+.+...|++|.+||+++...     .+.....++++++++||+|++++|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999976532     1334456889999999999999999888887763  347


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      ++.+++|.++||+|+..+...+++.+.+++.++...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            788999999999999999999999999988766433333554444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.39  E-value=1.6e-12  Score=120.29  Aligned_cols=109  Identities=19%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++|||||+|+||+.||++|...|++|.+|||+++..     .+.....++++++++   +|+|++++|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence            479999999999999999999999999999976432     244456788998876   699999999888888887 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      ++..+++|.++||+|+..+.+..++.+.+++..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77889999999999999999999999999988764  366

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.39  E-value=1.4e-12  Score=120.51  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||.+||++|...|++|.+||++++..     .+.....++.+++++||+|++++|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            389999999999999999999999999999986542     2344567888999999999999999887777764  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      +..+++|.++||+|++.+...+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld  118 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD  118 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            7789999999999999999999999999998875  356

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.36  E-value=2.5e-12  Score=125.92  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCc---ccCCHHHHhhc---CCEEEEecCCChhhh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYP---FYSNVCELAAN---CDILIICCGLTAETH  235 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~e~l~~---aDvV~l~~p~~~~t~  235 (300)
                      +|||||+|.||+.||++|...|++|.+|||++++..         +..   ...+++|+++.   +|+|++++|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            699999999999999999999999999999865321         222   45689998876   999999999999999


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      .++ ..+++.+++|.++||+|+...-+...+.+.+++.++.....=|.-.++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            988 568889999999999999999999999999999998766555666555

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.35  E-value=3.6e-12  Score=122.57  Aligned_cols=152  Identities=19%  Similarity=0.244  Sum_probs=112.0

Q ss_pred             EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccC
Q 022233           90 MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLG  168 (300)
Q Consensus        90 ~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~  168 (300)
                      =-+++|+..+ .+....+.+++|.|++..+..+.-|...+.-               ++.|..- ..    ..  +..+.
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai-~r----at--~~~l~  211 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGI-KR----AT--NVLIA  211 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHH-HH----hc--cCCCC
Confidence            4568888775 3344456789999999988877555333221               2222100 00    00  23478


Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      |++++|+|+|.||+.+|++++++|++|+++++++....     ++. ..+++++++.+|+|+.++    .+.++|+.+.+
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~  286 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHM  286 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHH
Confidence            99999999999999999999999999999998764421     332 347899999999998875    34667899999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233          244 SALGKEGVVINIGRGPI-IDEQELVR  268 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~-vd~~aL~~  268 (300)
                      ..||+|++++|+++... +|.++|.+
T Consensus       287 ~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        287 EAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             hcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999999999999886 78888765

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.32  E-value=7.7e-12  Score=115.84  Aligned_cols=109  Identities=21%  Similarity=0.243  Sum_probs=92.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++|||||+|.||++||++|...|.+|.+||++++..     .+.....+++|+++.   +|+|++++|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            479999999999999999999999999999986532     244455688888876   699999999887878777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      +++.+++|.++||++++.+....++.+.+++.++.  .+|
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d  117 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD  117 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence            77889999999999999999999999999998875  356

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.28  E-value=1.3e-11  Score=113.83  Aligned_cols=111  Identities=16%  Similarity=0.206  Sum_probs=92.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~l  243 (300)
                      ++|||||+|+||..||++|...|++|.+|++++...    .+.....+..+++++||+|++++|..++++.++.  ...+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            379999999999999999999999999998875321    2344567888999999999999999888887763  2367


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      +.+++|.++||+|+..+-....+.+.+++..+.  .+|.
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            778999999999999999999999999887664  4563

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.26  E-value=1.7e-11  Score=110.93  Aligned_cols=110  Identities=18%  Similarity=0.278  Sum_probs=97.0

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--  239 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--  239 (300)
                      .+.++||+||+|.||..|+.+|...|++|++|||+.+..     .++....++.|+.+.||+||.++|...+.++++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            458899999999999999999999999999999987754     2566778999999999999999999999998884  


Q ss_pred             HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ...++..++|... ||.|+-.+--...|.++++.++..
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~  150 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR  150 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe
Confidence            3467778888777 999999999999999999988664

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.25  E-value=1.2e-11  Score=115.19  Aligned_cols=116  Identities=23%  Similarity=0.277  Sum_probs=85.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      ..|.|++|||||+|+||+++|++|+.+|++|.++++.....      .+.. ..+.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            35899999999999999999999999999998776653321      1333 34899999999999999997765 6677


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK  291 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~  291 (300)
                      ++++++.|++|.+| -.+.|--+  ..+.      ...+...||+--.|..|.
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg  134 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPG  134 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCc
Confidence            78888999999988 55566221  1111      111345678877776553

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.22  E-value=5.5e-11  Score=116.25  Aligned_cols=117  Identities=21%  Similarity=0.273  Sum_probs=98.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------C--CcccCCHHHHhh---cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------S--YPFYSNVCELAA---NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~---~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+.||++|...|++|.+|||+++...         +  .....+++|+++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999999999999876411         2  224578999886   5899999999999999


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      .++ .++++.+++|.++||++.+..-|+..+.+.+.+.++.....=|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            888 468888999999999999999999999999999988654444554433

>PLN02858 fructose-bisphosphate aldolase

Probab=99.21  E-value=5.4e-11  Score=129.01  Aligned_cols=114  Identities=17%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc--hHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI--NKQ  241 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li--~~~  241 (300)
                      .++||+||+|.||..||++|...|++|.+|||++...     .++....++.|+.++||+|++++|..++++.++  ...
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g   83 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG   83 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence            5689999999999999999999999999999987642     255567899999999999999999999999887  356


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      +++.+++|.++||+|+..+-....+.+.+.+.+-....+|.
T Consensus        84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            78889999999999999999999999999887711134663

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.21  E-value=8.4e-11  Score=108.80  Aligned_cols=105  Identities=18%  Similarity=0.247  Sum_probs=87.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHH---hhcCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++|||||+|.||..+|++|...|++|.+|||+++..     .+.....+++++   ++++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            479999999999999999999999999999986542     123334566664   45689999999987 777777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.+.+++|.++||++.+...+...+.+.+++.++.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            77889999999999999999999999999888775

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.20  E-value=3.3e-11  Score=100.96  Aligned_cols=100  Identities=21%  Similarity=0.360  Sum_probs=71.5

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|++++..+...     .++. ..+++++++++|+++.+.-.    .+++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG~----~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATGN----KDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SSS----SSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCCC----ccccC
Confidence            35899999999999999999999999999999999876432     2443 35799999999999988542    46688


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 022233          240 KQVLSALGKEGVVINIGRGPI-IDEQELVRC  269 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~-vd~~aL~~a  269 (300)
                      .+.|.+||+|+++.|++.-.. +|-+.|.+.
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence            999999999999999987654 566655543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02712 arogenate dehydrogenase

Probab=99.17  E-value=8e-11  Score=119.64  Aligned_cols=108  Identities=16%  Similarity=0.342  Sum_probs=84.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhh-cCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAA-NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li  238 (300)
                      |.++.+++|||||+|.||+.+|+.|+.+|++|.+|+++....    .+.....++++++. ++|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            667899999999999999999999999999999999874321    23334567888776 59999999994 6777777


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .+-....||+|++++|++.+.-...+++.+.+..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            6554457999999999999985555555555544

>PLN02858 fructose-bisphosphate aldolase

Probab=99.13  E-value=1.6e-10  Score=125.31  Aligned_cols=111  Identities=23%  Similarity=0.207  Sum_probs=95.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc--hHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI--NKQ  241 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li--~~~  241 (300)
                      .++|||||+|.||.+||++|...|++|.+||+++...     .+.....++.+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            4789999999999999999999999999999986542     233446789999999999999999999998887  345


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCceEEEee
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ--GEIKGAGLD  281 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~--~~i~~a~LD  281 (300)
                      .++.+++|.++||+|+..+-..+.+.+.+++  ..+.  .+|
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD  443 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD  443 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence            7888999999999999999999999999988  5553  455

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.13  E-value=1.4e-10  Score=106.84  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=88.8

Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHHHhcC
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQVLSAL  246 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~l~~m  246 (300)
                      |||+|.||.+||++|...|++|.+|||++...     .+.....++.+++++||+|++++|..++++.++.  ..+.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999986532     2344456899999999999999998888777763  5677789


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      ++|.++||++...+-....+.+.+++.++.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999998888889999998877664  366

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.10  E-value=2.7e-10  Score=111.34  Aligned_cols=115  Identities=22%  Similarity=0.262  Sum_probs=93.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------C--CcccCCHHHHh---hcCCEEEEecCCChhhhhc
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------S--YPFYSNVCELA---ANCDILIICCGLTAETHHM  237 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~--~~~~~~l~e~l---~~aDvV~l~~p~~~~t~~l  237 (300)
                      .|||||+|.||+.||++|...|++|.+|||+++...        +  .....++++++   +++|+|++++|..+.++.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            389999999999999999999999999999865321        1  22345777766   4689999999998888888


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE  286 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E  286 (300)
                      + ..+++.+++|.++||++....-+...+.+.+++..+.....=|...+
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            7 46778899999999999999999999999999888864444344443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.05  E-value=9.5e-10  Score=102.20  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=70.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh-cC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS-AL  246 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~-~m  246 (300)
                      .+++|+|||+|.||+++|++|...|++|.+|+|+..        .+++++++++|+|++++|. +..+.++. .+.. .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence            367999999999999999999999999999998753        4788999999999999997 56777763 3333 47


Q ss_pred             CCCcEEEEcCCCccc
Q 022233          247 GKEGVVINIGRGPII  261 (300)
Q Consensus       247 k~ga~lIn~srg~~v  261 (300)
                      +++.++|++++|-..
T Consensus        73 ~~~~ivi~~s~gi~~   87 (308)
T PRK14619         73 PPETIIVTATKGLDP   87 (308)
T ss_pred             CCCcEEEEeCCcccC
Confidence            889999999885443

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.03  E-value=1.3e-09  Score=104.79  Aligned_cols=99  Identities=21%  Similarity=0.322  Sum_probs=81.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++++++...     .++. ..+++++++.+|+|+.+..    +.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence            34789999999999999999999999999999998875432     2332 2357788999999998753    345688


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233          240 KQVLSALGKEGVVINIGRGPI-IDEQELVR  268 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~-vd~~aL~~  268 (300)
                      ...+..||+|++++|+|++.+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 78777764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02256 arogenate dehydrogenase

Probab=99.02  E-value=7.5e-10  Score=102.72  Aligned_cols=105  Identities=18%  Similarity=0.383  Sum_probs=79.7

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchHH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      -.+++|+|||+|.||+.+|+.|+..|++|.+++++....    .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            357799999999999999999999999999998875321    1333456778876 4799999999954 566666433


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ....++++++++|++.+.-+-.+++.+.+..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            2567899999999999765556666666543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.96  E-value=1.3e-09  Score=105.60  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCc----------------ccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYP----------------FYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~----------------~~~~l~e~l~~aDvV~l~~  228 (300)
                      .++|||||+|.||..+|..++. |++|++||+++....    +..                .+.+..+.+++||++++|+
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            3699999999999999999877 799999998865421    111                1233345789999999999


Q ss_pred             CCC------hhhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEee----CCCCCCCCCC---
Q 022233          229 GLT------AETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG--EIKGAGLD----VFENEPDVPK---  291 (300)
Q Consensus       229 p~~------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~--~i~~a~LD----V~~~EP~~~~---  291 (300)
                      |..      ++...++  .+.+.+.+++|.++|+.|+-.+-..+.+...+.+.  ++. + .|    +|.+||..+.   
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~-~~~~~~~~~PE~v~~G~a~  162 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-F-NQDFYVGYSPERINPGDKK  162 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-c-CCCeeEeeCCCcCCCCccc
Confidence            966      3335555  34577889999999999999999888765554432  221 1 22    5778998653   


Q ss_pred             -CCCCCCCC
Q 022233          292 -ELXXXXXX  299 (300)
Q Consensus       292 -~L~~~~nv  299 (300)
                       .+.+.|.|
T Consensus       163 ~~~~~~~ri  171 (425)
T PRK15182        163 HRLTNIKKI  171 (425)
T ss_pred             ccccCCCeE
Confidence             35555543

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.95  E-value=3.1e-09  Score=98.99  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=69.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCC-CCC-----CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT-KKP-----SVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~-~~~-----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++. .+.     ..+.. ..+..+++++||+|++++|...+ ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            57899999999999999999999999988765443 222     11333 34688899999999999996534 334556


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 022233          241 QVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~v  261 (300)
                      ++...++++. +|.++-|=-+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            7778898886 7888877543

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.93  E-value=2.8e-09  Score=98.31  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------CcccCCHHHHhhcC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S------------YPFYSNVCELAANC  221 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~------------~~~~~~l~e~l~~a  221 (300)
                      ++|||||+|.||..+|+.+...|++|++||+++....                +            .....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            5899999999999999999999999999998764310                0            01122233568999


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHh
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~  272 (300)
                      |+|+.++|..++.+..+.+++.+.++++++|+ |+|.-+   ...+.+.+..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~  133 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR  133 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence            99999999999988888778888899999886 777664   3445555543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.93  E-value=3.9e-09  Score=97.12  Aligned_cols=80  Identities=24%  Similarity=0.352  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||+|+|||.| .||++||.+|...|++|++|++..         .++.++.++||+|+++++..+.    +....
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~~~----v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRPRL----IDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCChhc----ccHhh
Confidence            557899999999996 999999999999999999997653         2799999999999999986543    44443


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|--.
T Consensus       221 ---ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ---LKPGAVVIDVGINR  234 (301)
T ss_pred             ---ccCCcEEEEecccc
Confidence               89999999998544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.92  E-value=3.2e-09  Score=97.65  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------C-----------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------S-----------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------~-----------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||+|.||..+|..+...|++|++||++++...            +                 .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            4899999999999999999999999999998754311            0                 1124578889999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVF  283 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~~a~LDV~  283 (300)
                      ||+|+.|+|...+.+..+-.++.+.+++++++ +|+|..++   ..+.+.++. .-...++..|
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999988877666656677788999876 78888665   445555533 2233566666

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.92  E-value=9.6e-10  Score=84.22  Aligned_cols=85  Identities=26%  Similarity=0.390  Sum_probs=63.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCC---CEEE-EECCCCCCC------CCCcccC-CHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFG---CSIS-YNSRTKKPS------VSYPFYS-NVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g---~~V~-~~~~~~~~~------~~~~~~~-~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ||||||+|+||+++++.+...|   .+|. +++|+++..      .+..... +..|++++||+|++++|...-..  +.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~--v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPE--VL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHH--HH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHH--HH
Confidence            7999999999999999999999   8998 558876532      1333333 78999999999999998554333  44


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 022233          240 KQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg  258 (300)
                      ++. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            444 667789999998754

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.89  E-value=3.6e-09  Score=88.43  Aligned_cols=85  Identities=18%  Similarity=0.315  Sum_probs=61.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      |++|+|+|||||..|++.|.+|+..|++|.+-.|...+      ..++. ..+..|++++||+|++.+|+..+ ..++.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEVQ-PEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence            67999999999999999999999999999877665442      12433 46899999999999999995544 445568


Q ss_pred             HHHhcCCCCcEEE
Q 022233          241 QVLSALGKEGVVI  253 (300)
Q Consensus       241 ~~l~~mk~ga~lI  253 (300)
                      ++...||+|..++
T Consensus        80 ~I~p~l~~G~~L~   92 (165)
T PF07991_consen   80 EIAPNLKPGATLV   92 (165)
T ss_dssp             HHHHHS-TT-EEE
T ss_pred             HHHhhCCCCCEEE
Confidence            8888999998865

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.88  E-value=8.7e-09  Score=93.50  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=75.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC----EEEEE-CCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC----SISYN-SRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~-~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++|||||+|+||.+|++.|...|+    +|+++ +|++...     .+.....+..+++++||+|++++| .+..+.++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            589999999999999999998887    88888 8865432     244445678889999999999997 55566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      .++...++++.++|++.-|  +..+.+.+.+.
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            3555677889999988665  46666666553

>PLN02712 arogenate dehydrogenase

Probab=98.88  E-value=4.6e-09  Score=106.94  Aligned_cols=104  Identities=18%  Similarity=0.390  Sum_probs=76.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .-+.++|||||+|.||+.+|+.|+.+|++|.+++++....    .+.....++++++ .+||+|++|+|. ..+..++..
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            3456799999999999999999999999999999874321    2344456788866 569999999995 467777765


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      -.+..+++|++|+|+++-...--+++.+.+
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence            434678999999999755532223444444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.83  E-value=6.7e-09  Score=95.17  Aligned_cols=89  Identities=26%  Similarity=0.386  Sum_probs=67.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-PFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|+|||+|.||+++|+.|+..|++|.+|+++++..     .+. ....+..+.+++||+|++++|.....+ + .+++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~-~-~~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLP-P-SEQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHH-H-HHHHH
Confidence            479999999999999999999999999999875431     121 112223356899999999999654433 3 35677


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 022233          244 SALGKEGVVINIGRGPI  260 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~  260 (300)
                      +.++++++++|++.-..
T Consensus        79 ~~l~~~~ii~d~~Svk~   95 (279)
T PRK07417         79 PALPPEAIVTDVGSVKA   95 (279)
T ss_pred             HhCCCCcEEEeCcchHH
Confidence            77899999999987653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.83  E-value=1.4e-08  Score=98.16  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=78.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CC--cccCCHHHHh---------------hcCCEEEEec
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SY--PFYSNVCELA---------------ANCDILIICC  228 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~--~~~~~l~e~l---------------~~aDvV~l~~  228 (300)
                      ++|+|||+|.||..+|..|+..|++|++||+++....    +.  .....+++++               ++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999998765321    10  0123444443               3799999999


Q ss_pred             CCC------hhhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          229 GLT------AETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       229 p~~------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      |..      ++...+.  ...+.+.+++|.++|+.|.-.+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            964      1222222  25667889999999999999998888888877764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.82  E-value=3e-08  Score=94.67  Aligned_cols=91  Identities=18%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      ..++|+||| +|.||+.+|+.|+..|+.|.+|+++..        .+.++++++||+|++|+|.... ..++ +++.. +
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l  165 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------DRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L  165 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence            457999999 999999999999999999999998531        3677889999999999997754 4445 44555 8


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHH
Q 022233          247 GKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      ++|++++|++.-...-..++.+.
T Consensus       166 ~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        166 PEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             CCCcEEEECCCccHHHHHHHHHh
Confidence            99999999987653333444443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.80  E-value=5.8e-08  Score=90.68  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------------CCcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------------SYPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------------~~~~~~~l~e~l~~aDvV  224 (300)
                      ++|||||.|.||..+|..+...|++|.+||++++...                         ......++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            5899999999999999999999999999998754210                         012346888999999999


Q ss_pred             EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh-CCceEEEeeCCCC
Q 022233          225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ-GEIKGAGLDVFEN  285 (300)
Q Consensus       225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~-~~i~~a~LDV~~~  285 (300)
                      +-++|.+.+.+..+.+++.+.+++++ +|.+++.+ +...++.+.++. .++  .++=-|.+
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~--~g~HffnP  145 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERC--VVGHPFNP  145 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccE--EEEecCCc
Confidence            99999999988888888889999998 55665554 577778887754 333  45544443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.80  E-value=8.2e-09  Score=99.06  Aligned_cols=91  Identities=23%  Similarity=0.267  Sum_probs=71.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC------CC-----CCCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK------KP-----SVSYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~------~~-----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..|.||+|+|||+|.+|++-|..|+..|++|.+--|..      +.     ..+. ...+++|++++||+|++.+|++. 
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt~-  109 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDKQ-  109 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChHH-
Confidence            46999999999999999999999998899887433321      11     1233 34689999999999999999984 


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                       ++.+.++.++.||+|+.|. .|.|=
T Consensus       110 -q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225        110 -HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             -HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence             6677899999999998864 44443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.79  E-value=1.4e-08  Score=98.71  Aligned_cols=101  Identities=18%  Similarity=0.315  Sum_probs=79.2

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|+||| +|.||+++|+.|+..|++|.++++++...      .+.....++.+.+.+||+|++++|.. .+..++ +++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4899998 89999999999999999999999876432      13334457888999999999999964 445555 566


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .+.++++++++|++.......+++.+.+..
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~  108 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPE  108 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCC
Confidence            778999999999998765566666666543

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.79  E-value=3.3e-08  Score=91.04  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCC----------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          181 GSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       181 G~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |++||++|...|+.|++||+++...          .++....+..+++++||+|++++|..++++.++ ..+++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8899999999999999998875421          245566789999999999999999998888887 56889999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHh
Q 022233          251 VVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ++||+|+.++   +.++..|+.
T Consensus       111 IVID~STIsP---~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCTVSP---VVLYYSLEK  129 (341)
T ss_pred             EEEECCCCCH---HHHHHHHHH
Confidence            9999987654   455555544

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.78  E-value=2.1e-08  Score=92.41  Aligned_cols=110  Identities=19%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            5899999999999999999999999999998754210                1             11234554 5789


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      ||+|+.++|...+.+..+-+++.+.++++++|+ |+|.-.+   ..+.+.+... -...++-.|.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence            999999999887766555567778899999988 6665543   3577766432 1224555555

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=3.1e-08  Score=87.26  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=94.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHH---hhcCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCEL---AANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++||.||+|+||..++++|...|.+|++||+++...     .++....+++++   +...-+|.+++|....|..+| .+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            579999999999999999999999999999987542     244455677775   456789999999987777776 57


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +.+.|.+|-++||-+-...-|.....+.|+++.|  .-|||=.
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence            8888999999999999999999999999999999  4578744

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.78  E-value=2.7e-08  Score=93.14  Aligned_cols=98  Identities=20%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------C------CcccCCHHHHhhcCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------S------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------~------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++|+|||+|.||..+|.+|...|++|.+|+|+++..     .        +      .....+++++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999975421     0        1      1234578888999999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRG-PIID--EQELVRCLVQ  272 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg-~~vd--~~aL~~aL~~  272 (300)
                      ... +     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            663 2     4556778999999999998 4333  5566676655

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.77  E-value=3.1e-08  Score=91.21  Aligned_cols=79  Identities=20%  Similarity=0.342  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEEC-CCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNS-RTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~-~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      +.++.||+|+||| .|.||++||.+|...|+.|++|+ ++.          ++++++++||+|+++++....    +.+.
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~~----v~~~  218 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPEM----VKGD  218 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChhh----cchh
Confidence            4468999999999 99999999999999999999985 542          588999999999999987553    4333


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 022233          242 VLSALGKEGVVINIGRGP  259 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~  259 (300)
                      .   +++|+++||+|--.
T Consensus       219 ~---lk~GavVIDvGin~  233 (296)
T PRK14188        219 W---IKPGATVIDVGINR  233 (296)
T ss_pred             e---ecCCCEEEEcCCcc
Confidence            2   89999999998644

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.75  E-value=3.8e-08  Score=93.50  Aligned_cols=85  Identities=16%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHh-CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDA-FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      +.-.+|+|||+ |.||+.+|+.|+. +|.+|+++|+...      ...++++.+++||+|++|+|.... ..++ +++..
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l-~~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALI-EEYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-HHHhh
Confidence            34569999999 9999999999995 5889999998532      134678899999999999996544 3344 33333


Q ss_pred             ---cCCCCcEEEEcCCCc
Q 022233          245 ---ALGKEGVVINIGRGP  259 (300)
Q Consensus       245 ---~mk~ga~lIn~srg~  259 (300)
                         .++++++++|++.-.
T Consensus        74 ~~~~l~~~~iVtDVgSvK   91 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIK   91 (370)
T ss_pred             hhcCCCCCeEEEECCCCc
Confidence               489999999998766

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.75  E-value=3.4e-08  Score=95.38  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=76.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV  224 (300)
                      ++|+|||+|.||..+|..|...|++|++||+++....                        + .....++.+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            4799999999999999999999999999998754210                        1 12335678889999999


Q ss_pred             EEecCCChh---------hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          225 IICCGLTAE---------THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       225 ~l~~p~~~~---------t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      ++++|....         ....+ ..+.+.+++|.++|+.|.-.+-..+.+.+.+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~-~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~  135 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA-ETIAKHLRKGATVVLESTVPPGTTEEVVKPIL  135 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH-HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHH
Confidence            999996532         22222 45667789999999999877777777765443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.75  E-value=3.7e-08  Score=97.38  Aligned_cols=112  Identities=14%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV  224 (300)
                      ++|||||+|.||..+|.++...|++|.+||+++....                        + .....++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999998754311                        1 23456888999999999


Q ss_pred             EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      +.++|...+.+..+-+++.+.++++++ |+++..++ ....+.+.+.....  ..++-+-+
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n  141 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPER--LFVAHPYN  141 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence            999999887776555556566777764 56666664 35577777754332  44565544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.74  E-value=2.3e-08  Score=91.48  Aligned_cols=99  Identities=18%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC----EEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC----SISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      .++|||||+|+||.+|++.|...|+    +|++++|+.+..      .+.....+..+++++||+|++++|. ...+.++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence            3589999999999999999998774    699999876532      2333446788899999999999994 6666666


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                       +++...++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence             4555667888999999888  56677777774

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.74  E-value=3.2e-08  Score=90.63  Aligned_cols=99  Identities=15%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCC-------CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPS-------VSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~-------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      +++|||||+|+||.+||+.|...|    .+|.+++|+....       .+.....+..+++++||+|++++|... ...+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAEA   81 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHHH
Confidence            579999999999999999999887    6889999865321       134445678889999999999999544 3434


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      + ..+...++++.++|++.-|-  ..+.+.+.+.
T Consensus        82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            4 45556678899999986553  5566666554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.72  E-value=2.8e-08  Score=92.22  Aligned_cols=89  Identities=21%  Similarity=0.412  Sum_probs=68.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--cccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSY--PFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      .++|+|||+|.||..+|+.|+..|.  +|.+|++++...     .+.  ....++++.+++||+|++++|... +..+ .
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v-~   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAV-A   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHH-H
Confidence            4689999999999999999998885  899999876421     121  123567888999999999999643 3333 3


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q 022233          240 KQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~  259 (300)
                      +++.+.++++.++++++...
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHHHhhCCCCCEEEeCccch
Confidence            55667789999999997654

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.72  E-value=2e-08  Score=95.64  Aligned_cols=96  Identities=15%  Similarity=0.268  Sum_probs=74.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCC------cccCCHHHHhhcCCEEEEecCCC-h
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSY------PFYSNVCELAANCDILIICCGLT-A  232 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~------~~~~~l~e~l~~aDvV~l~~p~~-~  232 (300)
                      .+.+.+|.|+|.|.+|+.+++.++.+|++|.++|++....      .+.      ....++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            4678899999999999999999999999999999875321      111      11135677889999999998652 2


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcC--CCccc
Q 022233          233 ETHHMINKQVLSALGKEGVVINIG--RGPII  261 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~s--rg~~v  261 (300)
                      .+..+++++.++.||+++++||++  .|+.+
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG~~  274 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGGCV  274 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCCCCc
Confidence            345678999999999999999987  44443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.72  E-value=5.7e-08  Score=80.66  Aligned_cols=105  Identities=26%  Similarity=0.292  Sum_probs=78.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----cccCCHHHHhhcCCEEEEecCCChh-
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY----PFYSNVCELAANCDILIICCGLTAE-  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~e~l~~aDvV~l~~p~~~~-  233 (300)
                      ++.+++++|+|+|.||+.+++.+...| .+|.+++++.+...      +.    ....+++++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            366889999999999999999999886 68999998764321      11    1245677888999999999998764 


Q ss_pred             hhh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          234 THH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       234 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ... .+..   ..++++.+++|++..+.. + .+.+.+++.++
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~  133 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGA  133 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCC
Confidence            222 2332   236899999999887544 3 88888877655

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.71  E-value=9.7e-09  Score=83.20  Aligned_cols=103  Identities=18%  Similarity=0.329  Sum_probs=62.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ...+|+|||.|++|..+++.|...|+.|. +|+|+....      .+.....+++|++.++|++++++|++.-..  +.+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~--va~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAE--VAE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHH--HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHH--HHH
Confidence            35699999999999999999999999986 457765321      123345678899999999999999875433  445


Q ss_pred             HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          241 QVLSA--LGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       241 ~~l~~--mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ++...  .++|.+++-|| |. ...+-|..+-+.|-
T Consensus        87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga  120 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA  120 (127)
T ss_dssp             HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred             HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence            55554  78999999995 33 33334444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.71  E-value=4.1e-08  Score=93.25  Aligned_cols=97  Identities=20%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CC--cccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SY--PFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|+|||+|.||+++|+.|+..|++|.++++++....       +.  ....++++++++||+|++++|.. .+..++ +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence            4799999999999999999999998887776654311       11  12346788899999999999974 556665 3


Q ss_pred             HHHh-cCCCCcEEEEcCCCcccCHHHHHH
Q 022233          241 QVLS-ALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       241 ~~l~-~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      ++.. .++++++++|++.-+.--.+++.+
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~  107 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEA  107 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHH
Confidence            4444 488999999998877544444433

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.70  E-value=8.3e-08  Score=81.55  Aligned_cols=82  Identities=26%  Similarity=0.402  Sum_probs=69.6

Q ss_pred             cccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          165 SKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .++.|++|.|||.|.| |..+|+.|...|.+|++.+|+.         .++.+.+++||+|+.+++..   + +|.++. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence            3588999999999996 8889999999999999888762         46889999999999998743   2 677764 


Q ss_pred             hcCCCCcEEEEcCCCcccC
Q 022233          244 SALGKEGVVINIGRGPIID  262 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd  262 (300)
                        ++++.++||++...-+|
T Consensus       106 --~~~~~viIDla~prdvd  122 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             --ccCCeEEEEccCCCccc
Confidence              57899999999888766

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.69  E-value=4.8e-08  Score=96.74  Aligned_cols=114  Identities=17%  Similarity=0.267  Sum_probs=86.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|||||+|.||+.||..+...|++|++||++++...                +             .....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            5899999999999999999999999999998765311                1             122356655 579


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      ||+|+-++|.+.+.+..+-.++-..++++++| +|+|.-++-   ++..++....- ..++..|.+-|.
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r-~~G~hff~Pa~v  151 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPER-VAGLHFFNPVPL  151 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCccc-EEEEeecCCccc
Confidence            99999999999998887776666667899998 599887763   56666654221 366777775553

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.69  E-value=6.9e-08  Score=88.30  Aligned_cols=81  Identities=19%  Similarity=0.332  Sum_probs=68.7

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|.+ |+++|..|...|++|+++...         ..++.+.+++||+|+++++    +.++++.  
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~--  217 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA--  217 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence            55689999999999999 999999999999999876532         2478899999999999998    3467876  


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                       +.+|+|+++||+|.-.+
T Consensus       218 -~~ik~gavVIDVGin~~  234 (285)
T PRK14189        218 -DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             -HHcCCCCEEEEcccccc
Confidence             55899999999996553

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.68  E-value=4.4e-08  Score=89.54  Aligned_cols=95  Identities=17%  Similarity=0.382  Sum_probs=67.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCc-ccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSYP-FYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~~-~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++|+|||+|.||+++|+.|+..|.  +|++|++++...     .+.. ...+++++. +||+|++++|.....+ ++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~-~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIE-IL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHH-HH-HH
Confidence            479999999999999999998885  788999875431     1221 234667765 5999999999655433 33 45


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      +.+ +++++++++++.-    ...+.+.+.+
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            666 8999999997653    3445555543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.68  E-value=1.1e-07  Score=83.00  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=81.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcccCCHHHHhh-cCCEEEEecCCChhhhh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFYSNVCELAA-NCDILIICCGLTAETHH  236 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~  236 (300)
                      +.+++||+++|+|+|+||+.+|++|..+|++|+++|++.+...      +... .+.++++. +||+++.+..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence            4468899999999999999999999999999999998754311      2222 23456654 7999986654     35


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++++|.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            78899999997 45888998888876 5667788888774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.67  E-value=7.7e-08  Score=87.93  Aligned_cols=103  Identities=24%  Similarity=0.317  Sum_probs=78.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHh--CCCEEE-EECCCCCCCC------C-CcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA--FGCSIS-YNSRTKKPSV------S-YPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~--~g~~V~-~~~~~~~~~~------~-~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      .++|||||+|.||+.+++.+..  .++++. +++++++...      + ...+.++++++.++|+|++|+|.....+  +
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e--~   83 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRA--I   83 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHH--H
Confidence            4799999999999999999986  478875 6787654321      2 2346789999999999999999654322  2


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .   ...++.|.-++..++|.+.+.++|.++.++++..
T Consensus        84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            2   3334667667778899998999999999887654

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.66  E-value=8.4e-08  Score=87.70  Aligned_cols=80  Identities=24%  Similarity=0.395  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||+|+|||. |.||++||.+|...|++|++|...         ..++.+.+++||+|+++++....    +....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~~~----v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRGHF----VTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcccc----CCHHH
Confidence            55789999999999 999999999999999999988322         13789999999999999986543    44433


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               89999999998544

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.65  E-value=7.1e-08  Score=88.36  Aligned_cols=102  Identities=24%  Similarity=0.341  Sum_probs=72.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC--C-----CCCcc--cCCH-HHHhhcCCEEEEecCCChhhhhcc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP--S-----VSYPF--YSNV-CELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~--~-----~~~~~--~~~l-~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      .++|+|+|+|.||+.+|+.++..|+.+.++++....  .     .+...  ..+. .+.+..||+|++++|-... ..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~-~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEAT-EEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHH-HHHH
Confidence            469999999999999999999999977555443332  1     12211  1233 6778889999999996544 4444


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                       +++...+|+|++++|++.-.----++..+.+.+
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~  114 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG  114 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccC
Confidence             566668999999999988775555555555433

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.65  E-value=6.6e-08  Score=89.04  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=84.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------CC-------------cccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------SY-------------PFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~l~~  220 (300)
                      ++|||||.|.||..+|..+...|++|+.||++++...                +.             ....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            3899999999999999999999999999998765311                10             123466 55899


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSAL-GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      ||+|+-++|.+.+.+..+-..+-+.+ ++++++++.+.+-.+.+-+  .+++...- ..++..|.+-|.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la--~~~~~~~r-~~g~hf~~P~~~  150 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA--AATKRPGR-VLGLHFFNPVPV  150 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH--hhcCCCcc-EEEEecCCCccc
Confidence            99999999999998887766655555 8999998887776555444  44433222 366777775443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.65  E-value=1.4e-07  Score=86.92  Aligned_cols=114  Identities=16%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CC-------------cccCCHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------SY-------------PFYSNVCEL  217 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~e~  217 (300)
                      ++|+|||.|.||..+|..+...|++|+++|++++...                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998754210                   00             112234 56


Q ss_pred             hhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       218 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      +++||+|+.++|...+...-+-+++-+.++++++|++...|  +....+.+.+... -+..++.-|.+-|
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~~  149 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPAP  149 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCcc
Confidence            79999999999988765555555666778899999877766  4556777777542 2235566555444

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.65  E-value=5.4e-08  Score=90.53  Aligned_cols=90  Identities=17%  Similarity=0.281  Sum_probs=69.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|||+|.||..+|..|...|++|.+|++++...     .              +.....++++.+++||+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            489999999999999999999999999999875321     0              122345778889999999999996


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  261 (300)
                       ..++.++ ..+.+.++++.++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4566555 4566677899999999865443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.64  E-value=1.3e-07  Score=82.30  Aligned_cols=86  Identities=23%  Similarity=0.304  Sum_probs=67.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++++|+|.|+||..+|+++...|++|.+-+++.....        ......+.+++.+.+|+|++++|......  +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence            5899999999999999999999999988766544311        11234578899999999999999766544  4566


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 022233          242 VLSALGKEGVVINIGRG  258 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg  258 (300)
                      +...+. |.++||+.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            776666 8899998754

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.63  E-value=8.8e-08  Score=93.54  Aligned_cols=107  Identities=20%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhc---CCEEEEecCCChhhhhcchHHHHhcC
Q 022233          180 IGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAAN---CDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       180 IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      ||+.||++|...|++|.+|||+++...          +.....+++|+++.   +|+|++++|..+.++.++ ..+++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999875421          24456799998875   899999999999999988 4688999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      .+|.++||++....-|...+.+.+++.++.....=|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999988755544555443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.63  E-value=1e-07  Score=94.20  Aligned_cols=114  Identities=16%  Similarity=0.202  Sum_probs=85.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|||||.|.||+.||..+...|++|++||++++...                +             .....++++ +.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            5899999999999999999999999999998854311                1             112456655 579


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      ||+|+.++|...+.+..+-.++-+.++++++|. |+|.-++   ..+.+++... -...++..|.+-|.
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv  149 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV  149 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence            999999999998888777666667788888766 7766554   4566766432 33577887776554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.61  E-value=1.8e-07  Score=89.66  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=82.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CCccc--CCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------SYPFY--SNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------~~~~~--~~l~e~l~~aDvV~l  226 (300)
                      ++|+|||+|.||..+|..++ .|++|++||++.+...                     .....  .+..+++++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997766 4999999998764310                     01111  235677899999999


Q ss_pred             ecCCC----------hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 022233          227 CCGLT----------AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK  291 (300)
Q Consensus       227 ~~p~~----------~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~  291 (300)
                      ++|..          ...+..+ +.+.. +++|.++|+.|+-.+=-.+.+.+.+.+..+.      |.+|.+.+.
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G  146 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREG  146 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCC
Confidence            99965          2222222 34444 7999999999999999999999888765442      477776543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.60  E-value=7.9e-08  Score=80.69  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=65.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------------C------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------------V------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------------~------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +|+|+|.|++|.++|..|...|.+|..|.|+++..             .      ......++++++++||+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            69999999999999999999999999999875320             0      1123468999999999999999955


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .. +. +-+++...++++..+|++..|=
T Consensus        81 ~~-~~-~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 AH-RE-VLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             GH-HH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred             HH-HH-HHHHHhhccCCCCEEEEecCCc
Confidence            43 33 3467777789999999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.59  E-value=1.2e-07  Score=87.95  Aligned_cols=98  Identities=23%  Similarity=0.353  Sum_probs=81.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      -+.||++.|.|||..|+-+|.++++.|++|+++...+-.+     .++. ..+++|+...+|+++.+.-    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence            3799999999999999999999999999999987665432     2333 4579999999999998863    4678999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233          241 QVLSALGKEGVVINIGRGPI-IDEQELVR  268 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~-vd~~aL~~  268 (300)
                      +.|..||+|+++-|.+.=.+ +|-..|.+
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHH
Confidence            99999999999999996655 56666653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=1.5e-07  Score=87.46  Aligned_cols=101  Identities=11%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------C--------------CcccCCHHHHhhcCCEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------S--------------YPFYSNVCELAANCDILI  225 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~--------------~~~~~~l~e~l~~aDvV~  225 (300)
                      ++|+|||+|.||..+|..|...|++|++++++.+...          +              .....++++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998653210          0              112356778899999999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      +++|...+...-+-+++-..++++++++....|  +....+.+.+..
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999987654333334444556777766533333  345677777643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.58  E-value=5.2e-07  Score=83.00  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=77.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------------CCcccCCHHHHhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------------SYPFYSNVCELAA  219 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------------~~~~~~~l~e~l~  219 (300)
                      ++|+|||.|.||..+|..++..|.+|..||++.+...                              ......+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998753210                              0112467888899


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      .||+|+.++|...+...-+-+++.+.+++++++++.+.+-  ....+.+.+.... ...++-
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~H  142 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALH  142 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEc
Confidence            9999999999776655555566777788898885433332  4456666664332 234443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.56  E-value=1.9e-07  Score=84.52  Aligned_cols=98  Identities=13%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCE---EEEECCCCCCC------C-CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCS---ISYNSRTKKPS------V-SYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~---V~~~~~~~~~~------~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++|||||+|+||+++++.|...|..   +.+++|+.+..      . +.....+.+++++++|+|++++| .+....++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            4799999999999999999987753   57888875432      1 23345688889999999999999 444555553


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                       + +. ++++.++|.++  .-+..+.|.+.+..+
T Consensus        80 -~-l~-~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 -A-LR-FRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             -H-hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence             2 22 57889999987  347888888887653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.56  E-value=4e-07  Score=83.49  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..+...|++|+++|++++...                +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            4899999999999999999999999999997654320                1             01123444 4799


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ||+|+.++|.+.+.+.-+-+++.+.++++++++....|  +....|.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999987776655556677788999888444344  556688888744

>PRK07680 late competence protein ComER; Validated

Probab=98.56  E-value=2e-07  Score=85.11  Aligned_cols=98  Identities=16%  Similarity=0.362  Sum_probs=74.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC----EEEEECCCCCCCC-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC----SISYNSRTKKPSV-------SYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~~~~~~~~~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      ++|+|||+|.||+.+++.|...|.    +|.+++|+.+...       +.....+..+++.++|+|++++|. .....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence            479999999999999999998883    7899999764311       233456788889999999999973 3345554


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                       +++...++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             4555678888999999854  37777776654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.55  E-value=1.6e-07  Score=87.24  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=76.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||+|.||..+|..|+..|++|++||+++...                .+             .....++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999975321                11             1234678889999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      ||+|+.++|...+....+-.++-+..++..+ |..+... .....+.+.+.....  ...|-|-+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~i-i~ssts~-~~~~~la~~~~~~~~--~~~~hp~~  143 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAI-LASSTSA-LLASAFTEHLAGRER--CLVAHPIN  143 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcce-EEEeCCC-CCHHHHHHhcCCccc--EEEEecCC
Confidence            9999999998766554444444344455544 4444443 456678887755432  33454443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.54  E-value=5.1e-07  Score=82.75  Aligned_cols=102  Identities=21%  Similarity=0.366  Sum_probs=74.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCC-------C-CCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPS-------V-SYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~-------~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      ++|+|||+|+||+++++.|...|    .+|.+++++....       . ......+..++++++|+|++++|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999999877    6888888754221       1 112245778889999999999994 334443


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      + .++...++++..+|.+.-|  +..+.|.+.+...++
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v  115 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV  115 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence            3 4444567788899999888  677788887743344

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.50  E-value=8.8e-08  Score=78.45  Aligned_cols=94  Identities=28%  Similarity=0.335  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCCC------C-----CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSV------S-----YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~~------~-----~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      +++|+++.|||.|.+|+.++..|...|++ |++++|+.+...      +     ...+.++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999995 999999865321      1     12345677789999999999886543


Q ss_pred             hhhcchHHHHhcCCCCc-EEEEcCCCcccC
Q 022233          234 THHMINKQVLSALGKEG-VVINIGRGPIID  262 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga-~lIn~srg~~vd  262 (300)
                         .+.++.++..++.. +++|.+...-|+
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence               67888877665543 999998765554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.47  E-value=6.6e-07  Score=81.99  Aligned_cols=80  Identities=21%  Similarity=0.408  Sum_probs=67.1

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +..+.|+++.|||.|. +|+.+|..|...|++|+++.++.         .++.+.+++||+|+.+++.    .++|.++.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~  219 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV  219 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence            4468999999999999 99999999999999998876532         3688999999999999975    23576654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|--.
T Consensus       220 ---vk~gavVIDvGi~~  233 (286)
T PRK14175        220 ---VKEGAVIIDVGNTP  233 (286)
T ss_pred             ---cCCCcEEEEcCCCc
Confidence               68999999998644

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.40  E-value=1.1e-06  Score=90.84  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=74.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCC-----CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPS-----VSYP--FYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~-----~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|+|||+|.||.++|+.++..|  .+|++|+++....     .+..  ...+++++++++|+|++++|.. .+..++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4899999876532     1221  2346788899999999999964 444444 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .+.+.++++.+++|++.....-.+++.+.+..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~  113 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE  113 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccc
Confidence            45566788999999997664445556555543

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.39  E-value=3.1e-07  Score=80.99  Aligned_cols=127  Identities=15%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHH--HhCCCEEE-
Q 022233          120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL--DAFGCSIS-  196 (300)
Q Consensus       120 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l--~~~g~~V~-  196 (300)
                      ...++|.+..++...|++.         .|.                 ..++|+|||+|.+|+.+++.+  ...|+++. 
T Consensus        61 ~~~~gy~v~~l~~~~~~~l---------~~~-----------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivg  114 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKIL---------GLD-----------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVA  114 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHh---------CCC-----------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEE
Confidence            3444688888888777653         111                 245899999999999999863  35788876 


Q ss_pred             EECCCCCCCC----C--CcccCCHHHHhhc--CCEEEEecCCChhhh---hcchHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          197 YNSRTKKPSV----S--YPFYSNVCELAAN--CDILIICCGLTAETH---HMINKQVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       197 ~~~~~~~~~~----~--~~~~~~l~e~l~~--aDvV~l~~p~~~~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ++|+++....    +  .....++++++++  .|.|++++|.+...+   .+.......-|...++.+|+.+|.+|+.++
T Consensus       115 v~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~  194 (213)
T PRK05472        115 AFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVD  194 (213)
T ss_pred             EEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEec
Confidence            4666543221    1  1123467788765  999999999876532   222233344466678889999999999999


Q ss_pred             HHHHHHh
Q 022233          266 LVRCLVQ  272 (300)
Q Consensus       266 L~~aL~~  272 (300)
                      |..+|..
T Consensus       195 l~~~l~~  201 (213)
T PRK05472        195 LTVELQT  201 (213)
T ss_pred             hHHHHHH
Confidence            9999864

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.37  E-value=2e-06  Score=81.20  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCC----------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          181 GSLVAKRLDAFGCSISYNSRTKKP----------SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       181 G~~~A~~l~~~g~~V~~~~~~~~~----------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |..||.+|...|++|++||++...          ..+.....+..+++++||+|++++|....++.++ ..+.+.+++|.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            789999999999999999987641          1234445678889999999999999776577777 46788899999


Q ss_pred             EEEEcCCCcccCH-HHHHHHHH
Q 022233          251 VVINIGRGPIIDE-QELVRCLV  271 (300)
Q Consensus       251 ~lIn~srg~~vd~-~aL~~aL~  271 (300)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999987765 66666664

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.37  E-value=1.6e-06  Score=78.61  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC---CEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG---CSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g---~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+.+..      .+.....+.++++.++|+|++++|.. ..+.++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence            58999999999999999999888   6889999976432      13334567788899999999999843 344333 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      .+...+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            333333  46788886654  5666776664

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.36  E-value=7.5e-07  Score=78.78  Aligned_cols=89  Identities=19%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC---cccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------SY---PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------~~---~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+||| .|+||+.+|+.|...|.+|.+++|+++...             +.   ....+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4899997 899999999999999999999988764311             11   012366788999999999999543


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~v  261 (300)
                      . ..++ +++...++ +.++|+++-|--.
T Consensus        81 ~-~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        81 V-LKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             H-HHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            3 3333 33333444 5899999777433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.36  E-value=8.8e-07  Score=76.47  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=68.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CCC-------------CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SVS-------------YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~~-------------~~~~~~l~e~l~~aDvV  224 (300)
                      |+|+|||+|.+|..+|..|+..|++|+++|.+++.            +.+             .....+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            68999999999999999999999999999986542            000             12235678889999999


Q ss_pred             EEecCCChhhhh------cc--hHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHh
Q 022233          225 IICCGLTAETHH------MI--NKQVLSALGKEGVVINIGRGPIIDEQELV-RCLVQ  272 (300)
Q Consensus       225 ~l~~p~~~~t~~------li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~-~aL~~  272 (300)
                      ++|+|......+      +.  -+.+.+.++++.++|.-|+-.+=-.+.+. ..|++
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            999984322221      11  24566778999999999999987777444 44443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.33  E-value=9.1e-07  Score=80.52  Aligned_cols=90  Identities=20%  Similarity=0.340  Sum_probs=75.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+.||.+.|.|||..|+..|+.|++||.+|++....+-.+     .++. ..+++|+.++.|+++.+.    -.+++|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence            4789999999999999999999999999999987655332     2333 468999999999998875    34677899


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 022233          241 QVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~  260 (300)
                      +.|.+||.++++.|++.-.+
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHhCcCCcEEeccccccc
Confidence            99999999999999986554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.31  E-value=3e-06  Score=76.97  Aligned_cols=97  Identities=26%  Similarity=0.462  Sum_probs=66.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .++|+|||+|+||.++++.|...|    .++++++++.... +.....+..+++.+||+|++++| ...++.++. ++..
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~   79 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP   79 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence            469999999999999999999766    2488888865432 22334577788899999999988 344555553 4444


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      .++++. +|.+.-|  +..+.+.+.+.
T Consensus        80 ~l~~~~-iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         80 YLGSKL-LISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             hccCCE-EEEEeCC--ccHHHHHHHcC
Confidence            555554 4555444  33555555553

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.29  E-value=5.4e-06  Score=62.38  Aligned_cols=66  Identities=27%  Similarity=0.407  Sum_probs=55.2

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhC-CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAF-GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .+.+++++|+|.|.+|+.++..+... +.+|.+++|                     |+++.+.+..    +.+.++..+
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~~----~~~~~~~~~   74 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPAG----VPVLEEATA   74 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCCC----CCchHHHHH
Confidence            47789999999999999999999998 568888887                     9999998753    334455678


Q ss_pred             cCCCCcEEEEcC
Q 022233          245 ALGKEGVVINIG  256 (300)
Q Consensus       245 ~mk~ga~lIn~s  256 (300)
                      .++++++++|++
T Consensus        75 ~~~~~~~v~~~a   86 (86)
T cd05191          75 KINEGAVVIDLA   86 (86)
T ss_pred             hcCCCCEEEecC
Confidence            889999999975

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.28  E-value=9.2e-06  Score=80.11  Aligned_cols=176  Identities=16%  Similarity=0.189  Sum_probs=106.0

Q ss_pred             CcEEEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCC--c--------hhHHHHHHHHHH
Q 022233           63 SVEAILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF--S--------EDVADLAVGLLI  131 (300)
Q Consensus        63 ~~d~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~--------~~vAE~~l~l~L  131 (300)
                      ++|+|+.- . +.+.+-++.+ ++--+|+...-..|.=-++.+.+++|.+..-..+-  +        .++|+.      
T Consensus        64 ~adiIlkV-~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i------  135 (511)
T TIGR00561        64 QSDIILKV-N-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI------  135 (511)
T ss_pred             cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH------
Confidence            46766632 2 2344446665 45556666665555545778889999988632111  1        122222      


Q ss_pred             HHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C
Q 022233          132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V  206 (300)
Q Consensus       132 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~  206 (300)
                      +-+|-.....+..  |++.    .+.....  | .+.+.++.|+|+|.+|...++.++.+|.+|.+++++....     .
T Consensus       136 AGy~Avi~Aa~~l--gr~~----~g~~taa--g-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l  206 (511)
T TIGR00561       136 AGYRAIIEAAHEF--GRFF----TGQITAA--G-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM  206 (511)
T ss_pred             HHHHHHHHHHHHh--hhhc----CCceecC--C-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            2222222221111  1111    0000011  2 4568899999999999999999999999999988765321     1


Q ss_pred             CCcc-----------------cCC----------HHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          207 SYPF-----------------YSN----------VCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       207 ~~~~-----------------~~~----------l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +...                 ..+          +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||+|
T Consensus       207 Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       207 GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             CCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence            1110                 001          445678899998877  3222 23578999999999999999997

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.27  E-value=2.3e-06  Score=78.02  Aligned_cols=102  Identities=23%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSI-SYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V-~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|||||+|.||+.+++.+...  ++++ .++|++.+..      .+...+.++++++.++|+|+++.|......  +  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~--~--   77 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE--V--   77 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH--H--
Confidence            4899999999999999998865  4665 4688875421      123446789999899999999987433222  1  


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCCce
Q 022233          241 QVLSALGKEGVVINIGRGPIID---EQELVRCLVQGEIK  276 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd---~~aL~~aL~~~~i~  276 (300)
                       ....++.|.-++..+.|.+.|   .+.|.++.++++..
T Consensus        78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence             223345566667778888776   34677777776643

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.27  E-value=4e-06  Score=76.14  Aligned_cols=98  Identities=22%  Similarity=0.340  Sum_probs=74.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++|||||+|+||++++..|...|    .+|++.+|+.+...      +.....+.+++..++|+|++++.  |+    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence            58999999999999999999888    58899998865431      33335677899999999999995  32    22


Q ss_pred             HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          240 KQVLSALG---KEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       240 ~~~l~~mk---~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .+.++.++   ++.++|.++-|  +..+.|.+++.+.++
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v  112 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV  112 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence            44555555   78999999888  567778888764444

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.27  E-value=2.6e-06  Score=77.65  Aligned_cols=90  Identities=23%  Similarity=0.335  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      -|.||+|+|||||+-|++=|.+|+..|.+|++--|....      ..+.. ..+.+|++++||+|.+.+|...+. .++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q~-~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQK-EVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhHH-HHHH
Confidence            389999999999999999999999999998765443332      12333 468999999999999999976553 3556


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 022233          240 KQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg  258 (300)
                      +++-..|++|..+ ..|.|
T Consensus        93 ~~I~p~Lk~G~aL-~FaHG  110 (338)
T COG0059          93 KEIAPNLKEGAAL-GFAHG  110 (338)
T ss_pred             HHhhhhhcCCceE-Eeccc
Confidence            6788889999854 34444

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.26  E-value=4e-06  Score=75.01  Aligned_cols=101  Identities=15%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCC---CE-EEEECCC-CCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFG---CS-ISYNSRT-KKPS------VSYPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g---~~-V~~~~~~-~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+++|+|||.|+||+++++.+...|   .+ ++.++++ .+..      .+.....+++++++++|+|++++|... .+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence            3579999999999999999998765   23 6677764 2211      133345678899999999999999543 333


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++ +++...++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 33333344 5689999766  4555677766543

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.25  E-value=7.1e-06  Score=77.26  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHH---hhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCEL---AANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~---l~~aDvV~l~~p~~~~t~  235 (300)
                      ...||+||+|.||+.+|.+....|++|.+|+|+.....          ....+.+++|+   ++.---|++++-....+.
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            35799999999999999999999999999999875421          22334577775   566778888886543334


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      .+| ++++..|.+|-++||-+-..--|+....++|.+..|...|.-|-..|-
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe  133 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE  133 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence            444 578899999999999999999999999999999999999999987764

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=7.2e-06  Score=75.11  Aligned_cols=77  Identities=23%  Similarity=0.399  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||.|. +|+++|..|...|+.|+++.+.         ..++.+.+++||+|+.+++..    +++..  
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~p----~~v~~--  218 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGKP----GFIPG--  218 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence            4568999999999999 9999999999999999887543         236899999999999999532    24554  


Q ss_pred             HhcCCCCcEEEEcC
Q 022233          243 LSALGKEGVVINIG  256 (300)
Q Consensus       243 l~~mk~ga~lIn~s  256 (300)
                       +.+|+|+++||++
T Consensus       219 -~~vk~gavVIDvG  231 (285)
T PRK10792        219 -EWIKPGAIVIDVG  231 (285)
T ss_pred             -HHcCCCcEEEEcc
Confidence             4578999999999

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.23  E-value=3.8e-06  Score=78.87  Aligned_cols=104  Identities=20%  Similarity=0.329  Sum_probs=74.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCc-----------------ccCCHHHHhhcCCEEEEec
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYP-----------------FYSNVCELAANCDILIICC  228 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~-----------------~~~~l~e~l~~aDvV~l~~  228 (300)
                      ++|+|||.|.||..+|..|...|++|.+++|+....    .+..                 ...+. +.+..+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            589999999999999999999999999999864210    0110                 12233 5678999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      |... ...++ +.+.+.++++.++|++.-| +...+.+.+.+.+.++..
T Consensus        82 k~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         82 KSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA  127 (341)
T ss_pred             cCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence            8643 44444 4566778899999988654 455667777776655543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.23  E-value=1.6e-05  Score=65.52  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|++|.|+|-+. .|+.+|..|...|++|...+++.         .++++.+++||+|+.+++..    ++|+.+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            5578999999999874 79999999999999998877532         37889999999999998754    4576554


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               78999999999776

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=4e-06  Score=76.53  Aligned_cols=79  Identities=22%  Similarity=0.326  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|+|.+ ..|+++|..|...|++|+...+..         .++.+.+++||+|+.+++..    +++.++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence            456899999999999 999999999999999998765432         46999999999999999633    5677777


Q ss_pred             HhcCCCCcEEEEcCCC
Q 022233          243 LSALGKEGVVINIGRG  258 (300)
Q Consensus       243 l~~mk~ga~lIn~srg  258 (300)
                         +|+|+++||+|-.
T Consensus       214 ---vk~GavVIDVgi~  226 (279)
T PRK14178        214 ---VKPGATVIDVGIN  226 (279)
T ss_pred             ---cCCCcEEEEeecc
Confidence               4999999999944

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.23  E-value=8.6e-06  Score=68.59  Aligned_cols=81  Identities=26%  Similarity=0.418  Sum_probs=58.5

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|++++..|...|+.|+......         .++++.+++||+|+.++.-    .++|..  
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~--   95 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKA--   95 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-G--
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----cccccc--
Confidence            5579999999999995 99999999999999998766542         4789999999999999864    344543  


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                       +.+|+|+++||++.-..
T Consensus        96 -~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   96 -DWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             -GGS-TTEEEEE--CEEE
T ss_pred             -ccccCCcEEEecCCccc
Confidence             35799999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.20  E-value=6.7e-06  Score=75.56  Aligned_cols=80  Identities=25%  Similarity=0.391  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. .|+++|..|...|++|+++++.         ..++.+.+++||+|+.+++ .+   +++..+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~~---~~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-KP---ELIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-CC---CcCCHHH
Confidence            4468899999999998 9999999999999999888762         2468888999999999996 22   2566544


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +++|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               78999999998443

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.20  E-value=6e-06  Score=75.63  Aligned_cols=78  Identities=23%  Similarity=0.419  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+++|..|...|+.|+++...         ..++.+..++||+|+.++.-    .+++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence            5568999999999999 9999999999999999887642         23689999999999998753    2456655 


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                        .+|+|+++||+|-
T Consensus       225 --~vk~gavVIDvGi  237 (287)
T PRK14176        225 --MVKEGAVIFDVGI  237 (287)
T ss_pred             --HcCCCcEEEEecc
Confidence              5789999999985

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.19  E-value=3.2e-06  Score=78.79  Aligned_cols=94  Identities=26%  Similarity=0.425  Sum_probs=66.7

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC------CCCc--ccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS------VSYP--FYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------~~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      +.|++|+|||.|.||+.+++.|+..| .+|++++|+....      .+..  ...++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999876 4788999986432      1221  123567788999999999985543 222


Q ss_pred             chHHHHhcC-CCCcEEEEcCCCcccC
Q 022233          238 INKQVLSAL-GKEGVVINIGRGPIID  262 (300)
Q Consensus       238 i~~~~l~~m-k~ga~lIn~srg~~vd  262 (300)
                      + +..++.. +++.++||++...-+|
T Consensus       255 ~-~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence            2 3333333 3678999999644343

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.18  E-value=2.3e-06  Score=73.58  Aligned_cols=110  Identities=15%  Similarity=0.261  Sum_probs=74.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhcC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAANC  221 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~a  221 (300)
                      +|+|||.|.||+.+|..+...|++|..||+++....                +             .....+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999998765310                0             12346788888 99


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      |+|+=++|-.-+.+.-+-+++-+.++++++|...+.+  ..-..|...+... =+..++=.|.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p-~R~ig~Hf~~  139 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRP-ERFIGMHFFN  139 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTG-GGEEEEEE-S
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcC-ceEEEEeccc
Confidence            9999999988887776777777888899887655443  4555666666432 2235555554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.16  E-value=2.2e-06  Score=83.06  Aligned_cols=95  Identities=27%  Similarity=0.360  Sum_probs=70.9

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC--cccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY--PFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+.|++|+|+|.|.||+.+++.|+..| .+|++++|+.....      +.  ....++.+++.++|+|+.+++   .+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence            478999999999999999999999999 68999999865321      21  112467788899999999965   3445


Q ss_pred             cchHHHHhcCC----CCcEEEEcCCCcccCH
Q 022233          237 MINKQVLSALG----KEGVVINIGRGPIIDE  263 (300)
Q Consensus       237 li~~~~l~~mk----~ga~lIn~srg~~vd~  263 (300)
                      +++.+.++.+.    .+.++||.+...=+|.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            67877776542    3469999986544443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.16  E-value=1.9e-06  Score=73.06  Aligned_cols=92  Identities=16%  Similarity=0.277  Sum_probs=66.6

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CC--------------------------CcccCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VS--------------------------YPFYSN  213 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~--------------------------~~~~~~  213 (300)
                      ..+...+|.|+|.|+.|+..++.+.++|++|..++......     ..                          ..+...
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            45778899999999999999999999999999888754310     00                          001124


Q ss_pred             HHHHhhcCCEEEEecC-CChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          214 VCELAANCDILIICCG-LTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       214 l~e~l~~aDvV~l~~p-~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +.+.++.+|+|++++- -.+....++.++.++.||+|.+++|+|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            6788999999997543 355667789999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.15  E-value=3.9e-06  Score=77.57  Aligned_cols=104  Identities=14%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      -.+|||||+|+||+-.|+.+...|+.|..++|..-..    .+...+..+.+++ +++|+|++|+.. ..++.++-.-=+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence            3489999999999999999999999999999976322    2445667788876 558999999753 233444432235


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      +.+|.|++++++-.-....-+++.+-|-+.
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkd  160 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD  160 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccc
Confidence            668999999999988888888888877543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=7.6e-06  Score=74.93  Aligned_cols=80  Identities=25%  Similarity=0.344  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-| .+|+++|..|...|+.|++....         ..++.+.+++||+|+.+++.    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG~----p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVGK----PDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            556899999999999 99999999999999999876432         13588999999999999863    34676665


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||++--.
T Consensus       219 ---vk~GavVIDvGi~~  232 (285)
T PRK14191        219 ---VKKGAVVVDIGINR  232 (285)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               48999999999643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.14  E-value=9.2e-06  Score=72.33  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=80.1

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCE---EEEECCCC----CCCC-----------CC--ccc-CCHHHHhhcCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS---ISYNSRTK----KPSV-----------SY--PFY-SNVCELAANCD  222 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~e~l~~aD  222 (300)
                      +.++.++++.|+|.|.+|+.+|..|...|++   |+.+||+.    ....           ..  ... .++.+.++++|
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d   99 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD   99 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence            3457889999999999999999999999984   88999972    2210           00  111 36778889999


Q ss_pred             EEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC-ceEEEe
Q 022233          223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE-IKGAGL  280 (300)
Q Consensus       223 vV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~-i~~a~L  280 (300)
                      +|+.+.|     .++++.+.++.|.++.++++.+  .+..|.-+.++.+.|- |..-|.
T Consensus       100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~~~~~A~~~ga~i~a~G~  151 (226)
T cd05311         100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEIWPEEAKEAGADIVATGR  151 (226)
T ss_pred             EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcCCHHHHHHcCCcEEEeCC
Confidence            9999976     4668888999999999999998  3344555555555444 444443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.14  E-value=2.1e-05  Score=68.03  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCC------CCCcc------cCCHHHHhhcCCEEEEecCC
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPS------VSYPF------YSNVCELAANCDILIICCGL  230 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~------~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.++.+.-..      .....      ..++.+.+++||+|+.+++.
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~  136 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS  136 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence            7789999999999986 69999999999999999885322110      00001      11278999999999999984


Q ss_pred             Chhhhhc-chHHHHhcCCCCcEEEEcCCCcccC
Q 022233          231 TAETHHM-INKQVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       231 ~~~t~~l-i~~~~l~~mk~ga~lIn~srg~~vd  262 (300)
                      .    ++ +..+.   +|+|+++||+|--.-+|
T Consensus       137 ~----~~~i~~d~---ik~GavVIDVGi~~dvd  162 (197)
T cd01079         137 P----NYKVPTEL---LKDGAICINFASIKNFE  162 (197)
T ss_pred             C----CCccCHHH---cCCCcEEEEcCCCcCcc
Confidence            3    33 55554   67999999999654333

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.13  E-value=1.7e-05  Score=73.05  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=72.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-----------cccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-----------PFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-----------~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.+..     .+.           ....+.+++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999998854321     111           112345555 8999999999954 3


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +..++ +.+.+.+.+++.+|...-| +-.++.+.+.+...++.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            44433 4555667778888888776 33456666666555554

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.13  E-value=2.7e-06  Score=77.82  Aligned_cols=97  Identities=15%  Similarity=0.243  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC------cccCCHHHHhhcCCEEEEecCC-Ch
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY------PFYSNVCELAANCDILIICCGL-TA  232 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~------~~~~~l~e~l~~aDvV~l~~p~-~~  232 (300)
                      .+...+|.|||.|.+|..-|+.+..+|.+|+..|++.+...      +.      .....+++.+.++|+||-++-. .+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46778999999999999999999999999999988754321      11      1234688999999999987643 23


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcC--CCcccC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIG--RGPIID  262 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd  262 (300)
                      ....++.++.++.||||+++||++  -|+++.
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E  276 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE  276 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence            456678899999999999999996  444443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.08  E-value=1e-05  Score=74.63  Aligned_cols=103  Identities=21%  Similarity=0.366  Sum_probs=72.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC-----CCCC-------------cccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSY-------------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~-----~~~~-------------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||..+|..|...|.+|.+++| .+.     ..+.             ....+.+++...+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999988 321     0010             11235566678999999999954


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       +++.++ +.+.+.++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             334333 4555556778888877665 44567777777655544

>PLN00203 glutamyl-tRNA reductase

Probab=98.07  E-value=5e-06  Score=82.42  Aligned_cols=94  Identities=19%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------CC----cccCCHHHHhhcCCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------SY----PFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------~~----~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++.+++|+|||.|.||+.+++.|...|. +|++++|+.+...       +.    ....++.+++.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            3779999999999999999999999997 7999999865421       11    122466788999999999865   4


Q ss_pred             hhhcchHHHHhcCCC-------CcEEEEcCCCcccC
Q 022233          234 THHMINKQVLSALGK-------EGVVINIGRGPIID  262 (300)
Q Consensus       234 t~~li~~~~l~~mk~-------ga~lIn~srg~~vd  262 (300)
                      ...+|.++.++.+.+       ..+|||.+=..=||
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            456788888877642       25899998654333

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.07  E-value=1.4e-05  Score=74.28  Aligned_cols=96  Identities=19%  Similarity=0.333  Sum_probs=72.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----------C---C------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----------S---V------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----------~---~------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|||.|..|.++|..|...|.+|..|.|+++.          .   .      ......++.+++++||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            58999999999999999999999999999875321          0   0      123456899999999999999994


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                       ...+.++ +.+-..++++..+|+++-|=-.+...+.
T Consensus        82 -~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~l~  116 (329)
T COG0240          82 -QALREVL-RQLKPLLLKDAIIVSATKGLEPETGRLL  116 (329)
T ss_pred             -HHHHHHH-HHHhhhccCCCeEEEEeccccCCCcchH
Confidence             4444444 3334567899999999988666554444

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.04  E-value=2e-05  Score=74.43  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             EEEEEecChhHHHHHHHHHhCC--------CEEEEECCCC-----C----------CC---CC------CcccCCHHHHh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFG--------CSISYNSRTK-----K----------PS---VS------YPFYSNVCELA  218 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g--------~~V~~~~~~~-----~----------~~---~~------~~~~~~l~e~l  218 (300)
                      +|+|||.|+.|.++|..|...|        .+|..|.|..     .          ..   .+      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999999877        8999887622     0          00   01      12336889999


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  262 (300)
                      ++||+|++++|. ...+.++ .++-..++++..+|+++-|=-.+
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            999999999994 3444433 45556778899999998885443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.00  E-value=7.3e-06  Score=79.57  Aligned_cols=94  Identities=28%  Similarity=0.399  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CCc--ccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SYP--FYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+.|++|+|+|.|.||+.+++.|+..|. +|++++|+.....      +..  ...++.+.+.++|+|+.++|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 7999999764321      211  1245667789999999997643   34


Q ss_pred             cchHHHHhcC-----CCCcEEEEcCCCcccC
Q 022233          237 MINKQVLSAL-----GKEGVVINIGRGPIID  262 (300)
Q Consensus       237 li~~~~l~~m-----k~ga~lIn~srg~~vd  262 (300)
                      ++..+.++.+     .++.++||++-..=+|
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence            5666666543     3568999998544333

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.00  E-value=2e-05  Score=73.59  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=64.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHh-CC-CEEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDA-FG-CSISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~-~g-~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      ..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|+++...         +  .....++++++++||+|+++.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46799999999999999986653 55 58999999865421         1  223468889999999998887744   


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      +.++..   +.+++|+ +||+.-........+-.
T Consensus       201 ~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~  230 (314)
T PRK06141        201 EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDD  230 (314)
T ss_pred             CCEecH---HHcCCCC-EEEeeCCCCcccccCCH
Confidence            456654   3478998 45554333333334433

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=5.5e-05  Score=69.28  Aligned_cols=81  Identities=23%  Similarity=0.457  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.++.-.    +++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG~~----~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATGLA----KFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence            5679999999999986 6999999999999999876432         136899999999999998743    4566554


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                         +|+|+++||+|--.+
T Consensus       219 ---vk~GavVIDvGin~~  233 (284)
T PRK14170        219 ---IKPGAIVIDVGMDRD  233 (284)
T ss_pred             ---cCCCCEEEEccCccc
Confidence               679999999986553

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.4e-05  Score=70.55  Aligned_cols=78  Identities=22%  Similarity=0.334  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-| .+|+++|..|...|+.|+.....         ..++.+..++||+|+.++..    .+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVGK----PNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence            557899999999999 89999999999999999876432         13688999999999999863    34566554


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                         .|+|+++||++-
T Consensus       219 ---vk~gavvIDvGi  230 (281)
T PRK14183        219 ---VKEGAIVIDIGI  230 (281)
T ss_pred             ---cCCCcEEEEeec
Confidence               679999999993

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.99  E-value=5.5e-05  Score=74.81  Aligned_cols=178  Identities=16%  Similarity=0.225  Sum_probs=104.6

Q ss_pred             CcEEEEEeCCCCCCHHHHccCC-CcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCC--c--------hhHHHHHHHHHH
Q 022233           63 SVEAILSSGGAPVTAETLRLMP-AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF--S--------EDVADLAVGLLI  131 (300)
Q Consensus        63 ~~d~ii~~~~~~~~~e~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~--------~~vAE~~l~l~L  131 (300)
                      ++|+|+.- . +.+.+-++.+. +--+|+......|.=-++.+.++||.+..-...-  +        .+.|+.      
T Consensus        65 ~~diilkV-~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~I------  136 (509)
T PRK09424         65 QSDIILKV-N-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANI------  136 (509)
T ss_pred             cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhh------
Confidence            46777742 2 23444456654 5556666666566556778889999987632211  0        122221      


Q ss_pred             HHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C
Q 022233          132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V  206 (300)
Q Consensus       132 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~  206 (300)
                      +-+|-+..+.+.  -+...    .+.. ..  .....+.+|.|+|.|.+|...+..++.+|.+|.++|+++...     .
T Consensus       137 AGy~Av~~aa~~--~~~~~----~g~~-ta--aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl  207 (509)
T PRK09424        137 AGYRAVIEAAHE--FGRFF----TGQI-TA--AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM  207 (509)
T ss_pred             hHHHHHHHHHHH--hcccC----CCce-ec--cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            112222222111  11111    0000 00  113569999999999999999999999999999999876431     1


Q ss_pred             CCccc-------------------CCH--------HHHhhcCCEEEEecCCChh-hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          207 SYPFY-------------------SNV--------CELAANCDILIICCGLTAE-THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       207 ~~~~~-------------------~~l--------~e~l~~aDvV~l~~p~~~~-t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ++...                   .+.        .+.++++|+|+.+...... ...++.++.++.||+|+++|+++-
T Consensus       208 GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            22210                   010        1123579999998754221 234557899999999999999984

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.98  E-value=2.9e-05  Score=73.90  Aligned_cols=93  Identities=18%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC-------CEEEEECCCCCC---------------C---CC------CcccCCHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG-------CSISYNSRTKKP---------------S---VS------YPFYSNVCEL  217 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g-------~~V~~~~~~~~~---------------~---~~------~~~~~~l~e~  217 (300)
                      .++|+|||.|..|.++|..|...|       .+|..|.|++.-               .   .+      .....+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            469999999999999999999776       789888776531               0   01      1224578899


Q ss_pred             hhcCCEEEEecCCChhhhhcchHHHHh--cCCCCcEEEEcCCCcccCH
Q 022233          218 AANCDILIICCGLTAETHHMINKQVLS--ALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       218 l~~aDvV~l~~p~~~~t~~li~~~~l~--~mk~ga~lIn~srg~~vd~  263 (300)
                      +++||+|++++|.. ..+.++ +++-.  .+++++++|+++-|=-.++
T Consensus        91 v~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         91 VEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             HhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence            99999999999943 344443 33334  5677889999987754443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.97  E-value=1.5e-05  Score=68.94  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-------cccCCHHHHhhcCCEEE
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SY-------PFYSNVCELAANCDILI  225 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~-------~~~~~l~e~l~~aDvV~  225 (300)
                      |..++++++.|+|. |.+|+.+++.|...|.+|..++|+.+...          +.       ....++.++++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            44578999999995 99999999999999999999988754210          00       11123457889999999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      .+.|....+.  +  ..-...+++.+++|+.+...++.
T Consensus       103 ~at~~g~~~~--~--~~~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078         103 AAGAAGVELL--E--KLAWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             ECCCCCceec--h--hhhcccCceeEEEEccCCCCCCc
Confidence            9988665311  1  12223456889999988887654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.96  E-value=5e-05  Score=70.03  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=65.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++++.+++||+|+.++.-    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            5568999999999986 6999999999999999877543         23689999999999999864    25676655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|--.
T Consensus       229 ---vk~gavVIDvGin~  242 (299)
T PLN02516        229 ---IKPGAAVIDVGTNA  242 (299)
T ss_pred             ---cCCCCEEEEeeccc
Confidence               67999999998544

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=6.8e-05  Score=68.80  Aligned_cols=77  Identities=23%  Similarity=0.431  Sum_probs=63.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.....         ..++.+..++||+|+.++.-    .++|..+.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~  220 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIGS----PLKLTAEY  220 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence            4568999999999985 6999999999999999876532         13689999999999999873    24676665


Q ss_pred             HhcCCCCcEEEEcC
Q 022233          243 LSALGKEGVVINIG  256 (300)
Q Consensus       243 l~~mk~ga~lIn~s  256 (300)
                         .|+|+++||+|
T Consensus       221 ---vk~GavVIDvG  231 (288)
T PRK14171        221 ---FNPESIVIDVG  231 (288)
T ss_pred             ---cCCCCEEEEee
Confidence               67999999998

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=7e-05  Score=68.66  Aligned_cols=81  Identities=27%  Similarity=0.477  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|..|+.+...         ..++.+.+++||+|+.++..    .++|..+.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVGK----PKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            5578999999999875 7999999999999999876432         24789999999999999853    34677776


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                      +   |+|+++||++.-.+
T Consensus       220 i---k~gavVIDvGi~~~  234 (284)
T PRK14190        220 V---KEGAVVIDVGVNRL  234 (284)
T ss_pred             c---CCCCEEEEeecccc
Confidence            4   89999999987654

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=5.5e-05  Score=69.25  Aligned_cols=80  Identities=26%  Similarity=0.462  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+......         .++.+..++||+|+++++-    .+++..+.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----p~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGV----PHFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            5568999999999985 69999999999999998764321         3689999999999999874    34576664


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||++--.
T Consensus       218 ---vk~GavVIDvGin~  231 (282)
T PRK14169        218 ---VKPGAVVIDVGISR  231 (282)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               67999999998544

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=6e-05  Score=69.47  Aligned_cols=81  Identities=20%  Similarity=0.379  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.+++-.    +++..+.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAGRP----NLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            5578999999999985 6999999999999999876432         137899999999999999732    4576555


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                         +|+|+++||+|--.+
T Consensus       220 ---ik~gavVIDvGin~~  234 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRL  234 (297)
T ss_pred             ---cCCCCEEEEeccccc
Confidence               679999999986553

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.91  E-value=7.8e-06  Score=74.97  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV------SY----PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~------~~----~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .+.++++.|+|.|.+|++++..|...| .+|++++|+.+...      ..    ....++.+.+.++|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            467899999999999999999999999 68999999865321      10    11013456778999999999975432


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ..-...-....++++.+++|+.-.+ ..+ .|.++.++.+
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G  237 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQG  237 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCc
Confidence            1001111234567899999998755 344 4444444443

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=6.3e-05  Score=68.87  Aligned_cols=78  Identities=19%  Similarity=0.375  Sum_probs=64.5

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            5568999999999985 69999999999999998765432         3699999999999999864    34576664


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                         .|+|+++||+|-
T Consensus       219 ---vk~GavVIDvGi  230 (282)
T PRK14166        219 ---VKEGVIVVDVGI  230 (282)
T ss_pred             ---cCCCCEEEEecc
Confidence               679999999984

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.88  E-value=4.4e-05  Score=69.41  Aligned_cols=81  Identities=26%  Similarity=0.444  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+|+|+++.|||-++| |++||..|...++.|++.....         .++.+..++||+|+.++-.    .+++.++ 
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG~----p~~i~~d-  216 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVGK----PHFIKAD-  216 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecCC----ccccccc-
Confidence            56799999999999975 9999999999999998876532         4788999999999999853    3556543 


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                        ..|+|+++||++--.+
T Consensus       217 --~vk~gavVIDVGinrv  232 (283)
T COG0190         217 --MVKPGAVVIDVGINRV  232 (283)
T ss_pred             --cccCCCEEEecCCccc
Confidence              4789999999986544

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=6.2e-05  Score=69.41  Aligned_cols=80  Identities=21%  Similarity=0.380  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHh----CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA----FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|..    .|.+|+......         .++++.+++||+|+.+++..    ++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li  220 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI  220 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence            5568999999999985 69999999986    578887655432         36899999999999999533    568


Q ss_pred             hHHHHhcCCCCcEEEEcCCCc
Q 022233          239 NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .++.+   |+|+++||+|-..
T Consensus       221 ~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        221 TADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CHHHc---CCCCEEEEeeccc
Confidence            87776   8999999998544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.87  E-value=4.9e-05  Score=71.29  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCcccCCHH----HHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSNVC----ELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~----e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++.|+++.|||.|.||+.+|+.|...|. +|++.+|+....    .+.++.    +...++|+|+.+.--|......+..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~----~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL----PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc----chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            4889999999999999999999999996 699999987531    122222    5567999999874323333345666


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC
Q 022233          241 QVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd  262 (300)
                      +.++..++ -++||.+=..=||
T Consensus       247 ~~~~~~~~-r~~iDLAvPRdId  267 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVPRTFP  267 (338)
T ss_pred             HHHhhccC-cEEEEecCCCCCc
Confidence            65554332 3899988655555

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.87  E-value=5.3e-05  Score=69.13  Aligned_cols=104  Identities=18%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHHH-hhcCCEEEEecCCC--hhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCEL-AANCDILIICCGLT--AET  234 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e~-l~~aDvV~l~~p~~--~~t  234 (300)
                      ..+++++|+|.|.+|++++..|...|.+|.+++|+.++..         +.....++++. ..++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            4578999999999999999999999999999998754321         11112234433 35799999999975  222


Q ss_pred             hh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          235 HH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .. .++   .+.++++.+++|+.-.+.. + .|.++.++.++
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~  231 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence            11 222   3457899999999887753 3 57777666654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.86  E-value=7e-05  Score=70.10  Aligned_cols=80  Identities=21%  Similarity=0.411  Sum_probs=65.1

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+......         .++.+..++||+|+.++.-    .+++..+.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGk----p~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGI----PNLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            5578999999999986 69999999999999998764321         3688999999999999864    34576555


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|--.
T Consensus       276 ---vk~GavVIDVGin~  289 (345)
T PLN02897        276 ---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ---cCCCCEEEEccccc
Confidence               67999999998544

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=8.7e-05  Score=67.95  Aligned_cols=78  Identities=19%  Similarity=0.361  Sum_probs=64.5

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.++.-    .+++..+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVGK----PEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence            4568999999999985 6999999999999999887643         23688999999999999864    34566554


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                         .|+|+++||+|-
T Consensus       221 ---ik~gavVIDvGi  232 (284)
T PRK14177        221 ---ISEGAVLLDAGY  232 (284)
T ss_pred             ---cCCCCEEEEecC
Confidence               679999999985

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.85  E-value=7.7e-05  Score=70.15  Aligned_cols=80  Identities=25%  Similarity=0.383  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.++.-    .++|..+.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVGQ----PNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence            5568999999999985 6999999999999999876542         14789999999999999863    34576655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         .|+|+++||++--.
T Consensus       293 ---vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 ---IKPGAVVIDVGINP  306 (364)
T ss_pred             ---cCCCCEEEeccccc
Confidence               67999999998544

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.84  E-value=0.00011  Score=58.51  Aligned_cols=102  Identities=21%  Similarity=0.394  Sum_probs=71.3

Q ss_pred             CEEEEEe----cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVG----LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG----~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      |+|+|||    -+..|..+.+.|+..|++|+..++......+...+.++.|.-...|++++++|.. .+..++. +. ..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~-~~-~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVD-EA-AA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHH-HH-HH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHH-HH-HH
Confidence            5899999    7899999999999999999999888766667777889999558899999999843 3344442 22 33


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      +..+.+|+..+    ..++++.+.+++..+.-.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi  106 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIRVI  106 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-EEE
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCEEE
Confidence            46778999988    777888888888877633

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=0.00015  Score=66.27  Aligned_cols=80  Identities=23%  Similarity=0.423  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.++...    ++|..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~  219 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIGRP----KFIDEEY  219 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCCc----CccCHHH
Confidence            4568999999999985 6999999999999999877643         136899999999999998743    4576665


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||++--.
T Consensus       220 ---ik~gavVIDvGin~  233 (278)
T PRK14172        220 ---VKEGAIVIDVGTSS  233 (278)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               68999999997443

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.84  E-value=6.1e-05  Score=70.42  Aligned_cols=88  Identities=19%  Similarity=0.301  Sum_probs=62.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----------C--C-C------CcccCCHHHHh-hcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----------S--V-S------YPFYSNVCELA-ANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----------~--~-~------~~~~~~l~e~l-~~aDvV~l~~p  229 (300)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+.+.          .  . +      .....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            47999999999999999999999999999986421          0  0 1      11234566766 58999999998


Q ss_pred             CChhhhhcchHHHHh-cCCCCcEEEEcCCCc
Q 022233          230 LTAETHHMINKQVLS-ALGKEGVVINIGRGP  259 (300)
Q Consensus       230 ~~~~t~~li~~~~l~-~mk~ga~lIn~srg~  259 (300)
                      .. .++.++ +++.. .++++..+|.+.-|=
T Consensus        81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            43 444443 34444 667777777776664

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=0.0001  Score=67.65  Aligned_cols=81  Identities=22%  Similarity=0.435  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|..|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGR----PHLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            5578999999999875 79999999999999998765421         3688999999999999863    25676665


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 022233          243 LSALGKEGVVINIGRGPI  260 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~  260 (300)
                         +|+|+++||++.-.+
T Consensus       217 ---vk~GavVIDVGin~~  231 (287)
T PRK14173        217 ---VRPGAVVVDVGINRV  231 (287)
T ss_pred             ---cCCCCEEEEccCccc
Confidence               589999999996654

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=0.0001  Score=67.59  Aligned_cols=80  Identities=23%  Similarity=0.436  Sum_probs=64.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|...    +..|+.....         ..++.+.+++||+|+.+++-.    +++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG~p----~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIGVP----LFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----Ccc
Confidence            5568999999999985 699999999987    7888876542         136999999999999998643    467


Q ss_pred             hHHHHhcCCCCcEEEEcCCCc
Q 022233          239 NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ..+.   +|+|+++||++--.
T Consensus       215 ~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CHHH---cCCCCEEEEecccc
Confidence            6665   67999999998554

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=0.00011  Score=67.21  Aligned_cols=78  Identities=24%  Similarity=0.398  Sum_probs=64.3

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+..++||+|+.+++-.    ++|..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGkp----~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGKP----NFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCCc----CcCCHHH
Confidence            5578999999999985 69999999999999998765431         37889999999999998743    4566554


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                         .|+|+++||+|-
T Consensus       220 ---vk~gavVIDvGi  231 (282)
T PRK14180        220 ---VKEGAVVIDVGI  231 (282)
T ss_pred             ---cCCCcEEEEecc
Confidence               679999999984

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=0.00011  Score=67.52  Aligned_cols=80  Identities=19%  Similarity=0.413  Sum_probs=65.2

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+....         .++.+..++||+|+.++.-.    +++..+.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGkp----~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGIP----NFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            5568999999999985 69999999999999998765432         36899999999999998743    4566655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         .|+|+++||++--.
T Consensus       222 ---ik~gaiVIDVGin~  235 (294)
T PRK14187        222 ---IKKGAIVIDVGINS  235 (294)
T ss_pred             ---cCCCCEEEEecccc
Confidence               57999999997543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.78  E-value=0.00015  Score=63.33  Aligned_cols=97  Identities=25%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC---CCCC---------CC-----------------C--c---
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT---KKPS---------VS-----------------Y--P---  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~---~~~~---------~~-----------------~--~---  209 (300)
                      ..|..++|+|+|+|.+|..+|..|...|. +++.+|+.   ....         .+                 .  .   
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            45889999999999999999999999999 68888875   1110         00                 0  0   


Q ss_pred             ---ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC
Q 022233          210 ---FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       210 ---~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  262 (300)
                         ...++.+++.++|+|+-+ ..+.+++.++.......++...++...+-++..+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~  151 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDD  151 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCC
Confidence               012355678899999998 6788899998888888888777777555444443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.78  E-value=3.5e-05  Score=73.98  Aligned_cols=95  Identities=24%  Similarity=0.376  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S--YPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      +|.++++.|||.|.||.-+|+.|...|. +|++.+|+.....      +  +....++.+.+.++|+|+.++.   +...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            3899999999999999999999999995 7899999876532      2  2234567788999999999953   4445


Q ss_pred             cchHHHHhcC---CCCcEEEEcCCCcccCH
Q 022233          237 MINKQVLSAL---GKEGVVINIGRGPIIDE  263 (300)
Q Consensus       237 li~~~~l~~m---k~ga~lIn~srg~~vd~  263 (300)
                      +|....+...   ++.-++||.+=..-|+.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            5655544332   12258899885554443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=9.2e-05  Score=69.90  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=63.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CC--C------CcccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SV--S------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~--~------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ++|+|||.|.+|..+|..|...| .+..|.++++.            ..  +      .....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            58999999999999999999988 56666554321            00  1      1123577888999999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                       +..++..+ +++...++++..+|++.-|=-
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence             34455444 455566788888999988643

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.00015  Score=66.36  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|+.|+.+...         ..++.+..++||+|+.+++-    .++|..+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIGK----AELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            4568999999999985 6999999999999999876543         23688999999999999973    35677665


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         .|+|+++||+|--.
T Consensus       219 ---ik~gaiVIDvGin~  232 (282)
T PRK14182        219 ---VKEGAVVIDVGMNR  232 (282)
T ss_pred             ---cCCCCEEEEeecee
Confidence               67999999998544

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.77  E-value=5.5e-05  Score=70.98  Aligned_cols=84  Identities=19%  Similarity=0.234  Sum_probs=63.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-C-CCEEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-F-GCSISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~-g~~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      -+++||||.|.+|+..++.+.. + ..+|.+|+|+.+...         +  .....+.++++++||+|++++|.+   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            4699999999999998777654 2 347899999865421         2  223578999999999999998753   4


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .++..+   .+|+|+.+..++.-
T Consensus       205 P~~~~~---~l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKAD---WVSEGTHINAIGAD  224 (325)
T ss_pred             cEecHH---HcCCCCEEEecCCC
Confidence            566544   46899999999843

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=9.9e-05  Score=67.69  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=64.0

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHh----CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA----FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~----~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|..    .+++|+......         .++.+.+++||+|+.+++.    .++|
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG~----p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIGR----PRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCC----CCcC
Confidence            5568999999999986 69999999998    788887665321         3699999999999999953    4567


Q ss_pred             hHHHHhcCCCCcEEEEcCC
Q 022233          239 NKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~sr  257 (300)
                      .++.+   |+|+++||++-
T Consensus       219 ~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        219 TADMV---KPGAVVVDVGI  234 (286)
T ss_pred             CHHHc---CCCCEEEEeee
Confidence            77665   89999999983

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.75  E-value=0.00012  Score=68.24  Aligned_cols=107  Identities=20%  Similarity=0.297  Sum_probs=73.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CCC-------c-c-----cCCHHHHhhcCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VSY-------P-F-----YSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~~-------~-~-----~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      .++|+|||.|.||..+|..|+..|.+|.++.|+....   .+.       . .     ..+..+....+|+|+++++..+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~   84 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA   84 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence            4689999999999999999999999999888764211   010       0 0     0112234678999999998553


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                       +...+ +.+...+++++.++...-| +-.++.|.+.+...++.++
T Consensus        85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g  127 (313)
T PRK06249         85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG  127 (313)
T ss_pred             -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence             33322 3445557788888887665 4567778777766666544

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.75  E-value=7.4e-05  Score=70.29  Aligned_cols=94  Identities=26%  Similarity=0.331  Sum_probs=70.4

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHh-CCC-EEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDA-FGC-SISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      +.++.|++|.|+|. |.||+.+++.|.. .|. +++..+|+.....      ......++++.+.++|+|+.+.-..   
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---  226 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---  226 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence            56789999999999 8999999999974 564 8888888754321      1112346778999999888775322   


Q ss_pred             hh-cchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          235 HH-MINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      .. +++.+.   ++++.++||.|+..=||.
T Consensus       227 ~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        227 KGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            33 366654   479999999999988885

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.75  E-value=9.9e-05  Score=72.60  Aligned_cols=127  Identities=12%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPS------------VS------------YPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~------------~~------------~~~~~~l~e~l~~aDv  223 (300)
                      ++|+|||+|.+|..+|-.|+..  |++|+++|.++...            .+            .....+..+.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999976  58899998765321            00            1122456778999999


Q ss_pred             EEEecCCCh-----------hhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee---CCCCCC
Q 022233          224 LIICCGLTA-----------ETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD---VFENEP  287 (300)
Q Consensus       224 V~l~~p~~~-----------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD---V~~~EP  287 (300)
                      +++|+|...           +...+.  .+++.+.+++|.++|.-|.-.+=-++.+...|.+.. .  +.|   +|.+|=
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~--g~~f~v~~~PEr  158 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K--GINFQILSNPEF  158 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-C--CCCeEEEECCCc
Confidence            999997322           111222  244566789999999999988888888888887631 1  122   356676


Q ss_pred             CCCC----CCCCCCCC
Q 022233          288 DVPK----ELXXXXXX  299 (300)
Q Consensus       288 ~~~~----~L~~~~nv  299 (300)
                      +.+.    .+...|.|
T Consensus       159 l~~G~a~~d~~~p~ri  174 (473)
T PLN02353        159 LAEGTAIEDLFKPDRV  174 (473)
T ss_pred             cCCCCcccccCCCCEE
Confidence            6542    35555544

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00017  Score=66.14  Aligned_cols=80  Identities=16%  Similarity=0.388  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHh--CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDA--FGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~--~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      +.++.||++.|||-+. +|+++|..|..  .++.|+.+...         ..++.+..++||+|+.++.-.    ++|..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGkp----~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGVA----HLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCCc----CccCH
Confidence            5578999999999875 79999999987  78999876543         236999999999999998743    46766


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 022233          241 QVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~  259 (300)
                      +.   +|+|+++||++.-.
T Consensus       220 ~~---ik~GavVIDvGin~  235 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSR  235 (284)
T ss_pred             HH---cCCCCEEEEccccc
Confidence            55   67999999998655

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.75  E-value=4.3e-05  Score=73.92  Aligned_cols=89  Identities=22%  Similarity=0.348  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C-C--cccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S-Y--PFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~-~--~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .+.|+++.|||.|.||+.+++.|...|. +|++++|+.....      + .  ..+.++.+.+.++|+|+.|++..   +
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            4789999999999999999999999996 7999999865321      1 1  12345677899999999997643   4


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCc
Q 022233          236 HMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .+|..+...  .+..++||.+=..
T Consensus       255 ~vi~~~~~~--~~~~~~iDLavPR  276 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISIPQ  276 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCCCC
Confidence            456655543  2456888887543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.70  E-value=7.8e-05  Score=69.31  Aligned_cols=84  Identities=11%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CCcc-cCCHHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SYPF-YSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|+.+...         +... ..++++++++||+|+.++|.+   +
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            46799999999999999999874 665 7899999865321         1111 467899999999999998754   4


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .++..    .+|||+.++.+|.-
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCC
Confidence            56653    37999999999843

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.00014  Score=67.70  Aligned_cols=117  Identities=18%  Similarity=0.238  Sum_probs=97.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHh---hcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELA---ANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l---~~aDvV~l~~p~~~~t~~  236 (300)
                      ..||+||++.||+.++.+....|+.|.+|+|+..+..          ......+++|++   +.--+|++.+-....+..
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            4799999999999999999999999999999865421          123356888874   667788888776666665


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      +| +++...|.+|-++||-+-...-|+..-.+.|.+..|-..+.-|-..|-
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE  136 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE  136 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence            55 678899999999999999999999999999999998889988887764

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.0002  Score=66.04  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=63.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+.....         ..++.+..++||+|+.++--    .+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvGk----p~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAGV----PELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----cCcc
Confidence            5568999999999985 699999999866    7889875432         13689999999999999853    3467


Q ss_pred             hHHHHhcCCCCcEEEEcCCCc
Q 022233          239 NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ..+.   +|+|+++||++--.
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            6654   68999999998443

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.67  E-value=0.00011  Score=68.94  Aligned_cols=82  Identities=17%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             EEEEecChhHHHHHHHHHh-CCCEEEEE-CCCCCC------CCC------------------CcccCCHHHHhhcCCEEE
Q 022233          172 VGIVGLGSIGSLVAKRLDA-FGCSISYN-SRTKKP------SVS------------------YPFYSNVCELAANCDILI  225 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~-~g~~V~~~-~~~~~~------~~~------------------~~~~~~l~e~l~~aDvV~  225 (300)
                      |||+|||+||+.+++.+.. -+++|.+. |..++.      ..+                  .....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999774 35787654 433221      001                  111346899999999999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .|.|   .+.+..+++.+..|+++++|+-.-
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            9865   556678889999999999888653

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=0.00019  Score=67.90  Aligned_cols=118  Identities=22%  Similarity=0.335  Sum_probs=84.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------------------S-YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~l~~aDvV  224 (300)
                      .+|||||+|-||-++|-.+...|++|+++|.+.....                        + .....+.+ .++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence            7999999999999999999999999999998764311                        0 01112333 35599999


Q ss_pred             EEecCCChhhh-------hcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEeeCC---CCCCCCC
Q 022233          225 IICCGLTAETH-------HMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG--EIKGAGLDVF---ENEPDVP  290 (300)
Q Consensus       225 ~l~~p~~~~t~-------~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~--~i~~a~LDV~---~~EP~~~  290 (300)
                      ++|+|. |-+.       .+.  .+...+.||+|.++|==|+-.+=.++.++.-|.+.  .+. .+-|.|   .+|=..|
T Consensus        89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            999993 3222       122  24466789999999999999999999999888774  343 445643   5554333

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.65  E-value=2.8e-05  Score=60.55  Aligned_cols=85  Identities=21%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC--CC-CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK--PS-VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~--~~-~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      .++|++|.|||.|.+|..-++.|...|.+|+++++...  +. ... .....++.+.++|+|+++.+. ++    +++..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~-~~~~~~~~l~~~~lV~~at~d-~~----~n~~i   77 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQL-IRREFEEDLDGADLVFAATDD-PE----LNEAI   77 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEE-EESS-GGGCTTESEEEE-SS--HH----HHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHH-HhhhHHHHHhhheEEEecCCC-HH----HHHHH
Confidence            58899999999999999999999999999999988731  11 111 112345668889999987653 33    34444


Q ss_pred             HhcCCCCcEEEEcC
Q 022233          243 LSALGKEGVVINIG  256 (300)
Q Consensus       243 l~~mk~ga~lIn~s  256 (300)
                      ....+.-.+++|++
T Consensus        78 ~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   78 YADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHTTSEEEET
T ss_pred             HHHHhhCCEEEEEC
Confidence            45555456778875

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.64  E-value=0.00029  Score=64.86  Aligned_cols=80  Identities=19%  Similarity=0.373  Sum_probs=63.6

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+......         .++.+..++||+|+.++.-.    ++|
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGkp----~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQP----EFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCCc----Ccc
Confidence            4568999999999985 699999999876    68888764321         36899999999999998743    456


Q ss_pred             hHHHHhcCCCCcEEEEcCCCc
Q 022233          239 NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ..+.   .|+|+++||+|--.
T Consensus       219 ~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        219 KADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CHHH---cCCCCEEEEecCcc
Confidence            6544   68999999998543

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00028  Score=65.07  Aligned_cols=80  Identities=20%  Similarity=0.400  Sum_probs=63.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhC----CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAF----GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~----g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      +.++.||++.|||-+. +|+++|..|...    ++.|+.....         ..++.+..++||+|+.++.-    .+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvGk----p~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAGV----PNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecCC----cCcc
Confidence            5578999999999885 799999999977    6888775432         13688999999999999853    3457


Q ss_pred             hHHHHhcCCCCcEEEEcCCCc
Q 022233          239 NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ..+.   +|+|+++||++.-.
T Consensus       223 ~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        223 KPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CHHH---cCCCCEEEecCCCc
Confidence            6554   67999999998443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00017  Score=68.87  Aligned_cols=100  Identities=16%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|.|||.|.||+.+|..|++.| .+|++-+|+.....               .+.....+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999988 89999999854311               112234678899999999999985533


Q ss_pred             hhhcchHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          234 THHMINKQVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       234 t~~li~~~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .      ..+ +.++.|.-.+|+|-.+.-- .++.+..++.++.
T Consensus        82 ~------~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit  118 (389)
T COG1748          82 L------TILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT  118 (389)
T ss_pred             H------HHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence            2      232 5567888899998776553 6666666666653

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.58  E-value=0.00019  Score=67.37  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=63.6

Q ss_pred             CCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .++++|||.|.+|+..++.+. ..+. +|.+|+|+.+...          +.  ....++++++++||+|+.++|..   
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~---  205 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE---  205 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence            569999999999999999997 4675 6899999865421          22  22467899999999999998754   


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..+|..+.   +|+|+.+..++.
T Consensus       206 ~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             CcEecHHH---cCCCcEEEeeCC
Confidence            35665443   689988887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.58  E-value=0.00024  Score=70.11  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC----C-cccCCHHHH--hhcCCEEEEecCCChhhhh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS----Y-PFYSNVCEL--AANCDILIICCGLTAETHH  236 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~----~-~~~~~l~e~--l~~aDvV~l~~p~~~~t~~  236 (300)
                      +..+.+++++|+|.|.+|++++..|...|++|.+++|+..+...    . ....+++++  +.++|+|++++|....   
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~---  403 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT---  403 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence            34578999999999999999999999999999999887543210    0 011122322  5789999999997653   


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                       +.. .+.     .+++|+.-.+... . |.++.++.++
T Consensus       404 -~~~-~l~-----~~v~D~~Y~P~~T-~-ll~~A~~~G~  433 (477)
T PRK09310        404 -IPK-AFP-----PCVVDINTLPKHS-P-YTQYARSQGS  433 (477)
T ss_pred             -chh-HHh-----hhEEeccCCCCCC-H-HHHHHHHCcC
Confidence             222 222     3889998877543 3 6666666554

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.58  E-value=0.00028  Score=56.32  Aligned_cols=84  Identities=15%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             EEEEEe-cChhHHHHHHHHHhC-CCEEEEE-CCCCCCCC------C-C--cccCCHH-HHh--hcCCEEEEecCCChhhh
Q 022233          171 RVGIVG-LGSIGSLVAKRLDAF-GCSISYN-SRTKKPSV------S-Y--PFYSNVC-ELA--ANCDILIICCGLTAETH  235 (300)
Q Consensus       171 ~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~-~~~~~~~~------~-~--~~~~~l~-e~l--~~aDvV~l~~p~~~~t~  235 (300)
                      ++||+| .|.+|+.+++.+... ++++... +++.....      + .  ....+.+ +.+  .++|+|++++|.....+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999874 7777644 43321111      0 1  0011111 122  58999999999775444


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                       .+ ......+++|.++||+|
T Consensus        81 -~~-~~~~~~~~~g~~viD~s   99 (122)
T smart00859       81 -IA-PLLPKAAEAGVKVIDLS   99 (122)
T ss_pred             -HH-HHHHhhhcCCCEEEECC
Confidence             22 13455679999999998

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.56  E-value=0.00018  Score=67.44  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+++...          +.  ..+.+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            3679999999999999988765 4565 6889999865321          11  23567899999999999998855  


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                       +.++.    +.+|+|+.++.++.
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCC
Confidence             34554    55799999988865

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.55  E-value=0.00046  Score=64.58  Aligned_cols=113  Identities=18%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +..++|+|||.|.||..+|..+...| .++..+|.+.+...             +.    ....+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999999888 58889998654311             10    1123555 779999999998


Q ss_pred             --CCCh-hhh--------hcchHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE--ee
Q 022233          229 --GLTA-ETH--------HMINKQ---VLSALGKEGVVINIGRGPIIDEQELVRCLV--QGEIKGAG--LD  281 (300)
Q Consensus       229 --p~~~-~t~--------~li~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~aL~--~~~i~~a~--LD  281 (300)
                        |..+ .++        .++ .+   .+....|.+++|+++-..-+-...+.+...  ..++.|.+  ||
T Consensus        82 g~~~~~g~~r~dll~~n~~i~-~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIM-KSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              4333 111        111 12   233346788899986544333444444321  35666555  55

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.54  E-value=0.00019  Score=62.57  Aligned_cols=62  Identities=18%  Similarity=0.251  Sum_probs=47.6

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      ++++|||- |.||+.+++.++..|+.|.                     +++||+|++|+|... +..++     +.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~-~~~~i-----~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDA-ALNYI-----ESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHH-HHHHH-----HHhC-
Confidence            48999999 9999999999999999885                     368999999999543 23333     2232 


Q ss_pred             CcEEEEcCCCcc
Q 022233          249 EGVVINIGRGPI  260 (300)
Q Consensus       249 ga~lIn~srg~~  260 (300)
                       .+++|++.-.-
T Consensus        53 -~~v~Dv~SvK~   63 (197)
T PRK06444         53 -NNFVEISSVKW   63 (197)
T ss_pred             -CeEEeccccCH
Confidence             37889986553

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.52  E-value=0.00092  Score=62.47  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCC-CCC---CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTK-KPS---VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~-~~~---~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .+|||||+|+||+.+++.+... ++++. ++++++ ...   .+.....+.++++.+.|+|++|+|....-     ....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence            5999999999999999999865 78876 578874 211   12223356777888999999999865432     3344


Q ss_pred             hcCCCCcEEEEcCCC--cccC-HHHHHHHHHh-CCce
Q 022233          244 SALGKEGVVINIGRG--PIID-EQELVRCLVQ-GEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg--~~vd-~~aL~~aL~~-~~i~  276 (300)
                      ..++.|.-+|+..--  .+-+ .+.|-++.++ |++.
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            556677777777432  1123 3344445553 5654

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.52  E-value=0.00036  Score=72.11  Aligned_cols=114  Identities=13%  Similarity=0.154  Sum_probs=83.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998764310                0             0112345 45799


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      ||+|+=++|-..+.+.-+-+++-+.++++++|...+.+  +....|.+.+.... +..++--|.+-+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~-r~~g~Hff~P~~  456 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPE-NFCGMHFFNPVH  456 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCc-cEEEEecCCccc
Confidence            99999999999888877778888889999887554433  44556667765432 236677665443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.48  E-value=0.0002  Score=62.78  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-Cc---ccCCHHHHhhcCCEEEEecCCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-YP---FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~~---~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      --++.|++|.|||.|.+|..-++.|...|.+|+++++...+..      + ..   .... .+.+..+|+|+.+....
T Consensus         4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~   80 (205)
T TIGR01470         4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE   80 (205)
T ss_pred             EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence            4579999999999999999999999999999999987654211      1 11   1112 34578899988875543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.47  E-value=0.0003  Score=61.55  Aligned_cols=69  Identities=20%  Similarity=0.159  Sum_probs=50.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-Ccc-cCCH-HHHhhcCCEEEEecCCCh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-YPF-YSNV-CELAANCDILIICCGLTA  232 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~~~-~~~l-~e~l~~aDvV~l~~p~~~  232 (300)
                      .-++.|++|.|||.|.+|...++.|...|.+|+++++...+..      + ... ...+ ++.+..+|+|+.++...+
T Consensus         5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718          5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence            5679999999999999999999999999999999987543210      1 110 0111 345788998888876443

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.47  E-value=0.00088  Score=62.16  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=82.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CcccCCHHHHhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------------YPFYSNVCELAA  219 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~e~l~  219 (300)
                      -++|||||.|.||+.+|..+..-|+.|..+|++++..                .+             .....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            3699999999999999999999779999999884320                00             01112222 689


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      +||+|+=++|-+-+.++-+-+++-...+++++|= |||+   +.-.++.++++... ...++=-|.+-|+
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~rpe-r~iG~HFfNP~~~  147 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKRPE-RFIGLHFFNPVPL  147 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCCch-hEEEEeccCCCCc
Confidence            9999999999998888777777777788888864 4443   44566777774433 3577776765543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.46  E-value=0.00022  Score=65.71  Aligned_cols=103  Identities=18%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCC-----------C--cccCCHHHHhhcCCEEEEecCCCh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVS-----------Y--PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~-----------~--~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      +.++++.|||.|.+|++++..|...|+ +|++++|+......           .  ....++.+.++++|+||.++|..-
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            567899999999999999999999998 79999998653210           0  112345567889999999998642


Q ss_pred             hh--hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          233 ET--HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       233 ~t--~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..  ...++.   ..++++.+++|+.-.+. .+.-|..|-+.|
T Consensus       205 ~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T~ll~~A~~~G  243 (284)
T PRK12549        205 AKHPGLPLPA---ELLRPGLWVADIVYFPL-ETELLRAARALG  243 (284)
T ss_pred             CCCCCCCCCH---HHcCCCcEEEEeeeCCC-CCHHHHHHHHCC
Confidence            11  112333   34678889999987663 444444444444

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.45  E-value=0.0011  Score=53.33  Aligned_cols=97  Identities=20%  Similarity=0.259  Sum_probs=58.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------------VSYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|+|+|+ |+||+.+++.+.. -|+++. ++++...+.             .+.....++++++..+|+|+-..  +++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            48999999 9999999999997 678864 567665221             13344678999999999998876  333


Q ss_pred             -hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          234 -THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       234 -t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                       +...+ +..   ++.|.-+|-..+|---++.+.++.+.+
T Consensus        79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence             22222 222   334555565556664444344444433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.43  E-value=0.00044  Score=64.35  Aligned_cols=111  Identities=16%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||..+|..+...|. +|..+|...+...             ..    ....+.++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999998776 8999987543211             00    11245666 79999999998832


Q ss_pred             hh-----------hhhcchH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE--ee
Q 022233          232 AE-----------THHMINK--QVLSALGKEGVVINIGRGPIIDEQELVRC--LVQGEIKGAG--LD  281 (300)
Q Consensus       232 ~~-----------t~~li~~--~~l~~mk~ga~lIn~srg~~vd~~aL~~a--L~~~~i~~a~--LD  281 (300)
                      ..           +..++..  +.+....+.+++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           1112211  11223357889999976554555555555  4455676765  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.43  E-value=0.00016  Score=67.54  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             CEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCC---------CC--CcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPS---------VS--YPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~---------~~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      ++++|||.|..++.-++.+.. ++. +|.+|+|++...         .+  .....+.++++++||+|+.++|.+..+ .
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            489999999999999998874 665 789999986431         11  234578999999999999998755432 5


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcc
Q 022233          237 MINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      +++.   +.+++|+.++.++...+
T Consensus       208 ~~~~---~~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDA---EWLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-G---GGS-TT-EEEE-S-SST
T ss_pred             cccH---HHcCCCcEEEEecCCCC
Confidence            6654   36789999999987654

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.42  E-value=0.00034  Score=65.62  Aligned_cols=82  Identities=22%  Similarity=0.329  Sum_probs=61.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -++|||||.|.+|+..++.+.. .+. +|.+|+|+.....          +  ...+.+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            4599999999999999998874 455 5678999864311          1  123568889887 99999998864   


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..++..+   .+|+|+.+..++.
T Consensus       205 ~P~~~~~---~l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAE---WIKEGTHINAIGA  224 (326)
T ss_pred             CcEecHH---HcCCCCEEEecCC
Confidence            4667654   4589999888874

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.41  E-value=0.00034  Score=65.41  Aligned_cols=82  Identities=13%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CC--cccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SY--PFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      -++++|||.|..++..++.+.. +.. +|.+|+|+++...         +.  ....+.++++++||+|+.+++.   +.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence            4699999999999999998774 343 7999999876421         11  2246899999999999999763   35


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .+|..+   .+|+|+.++.++
T Consensus       205 P~~~~~---~l~~G~hi~~iG  222 (315)
T PRK06823        205 PLLQAE---DIQPGTHITAVG  222 (315)
T ss_pred             ceeCHH---HcCCCcEEEecC
Confidence            677654   468999999887

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.41  E-value=0.00061  Score=70.64  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..+...|++|..+|++++...                +             .....++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            5899999999999999999999999999998764310                0             0112345 35799


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE  286 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E  286 (300)
                      ||+|+=++|-+.+.+.-+-+++-+.++++++|.....  -++...|.+.+.... ...++.-|.+-
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~-r~ig~Hff~P~  477 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPE-KVIGMHYFSPV  477 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCcc-ceEEEeccCCc
Confidence            9999999999988887777888888999988653322  245566777765433 24778877643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.41  E-value=0.00067  Score=61.81  Aligned_cols=102  Identities=22%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC-----C--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-----V--SYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-----~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|||||+|.||+.+++.+... ++++. ++++.....     .  +...+.+++++-.+.|+|+.|.|.....+     
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e-----   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE-----   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence            4899999999999999999875 56653 333322110     1  23345678887456899999988543322     


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCce
Q 022233          241 QVLSALGKEGVVINIGRGPIIDE---QELVRCLVQGEIK  276 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~---~aL~~aL~~~~i~  276 (300)
                      -....++.|.-++-.+-|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            22333455555555555655543   4566666666543

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.40  E-value=0.00098  Score=60.43  Aligned_cols=98  Identities=22%  Similarity=0.282  Sum_probs=64.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---CCEEE-EECCCCCCC----CCCcccCCHHHH-hhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---GCSIS-YNSRTKKPS----VSYPFYSNVCEL-AANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---g~~V~-~~~~~~~~~----~~~~~~~~l~e~-l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|||||+|.||+.+++.+..-   ++++. ++++..+..    .......+++++ ....|+|+=|..-..     +-+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence            5899999999999999998753   35554 456554221    123446789997 577999988875222     112


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHh
Q 022233          241 QVLSALGKEGVVINIGRGPIID---EQELVRCLVQ  272 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd---~~aL~~aL~~  272 (300)
                      -..+.++.|.-++=.|-|.+.|   ++.|.++.++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            2233355677777788888887   4555555554

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00072  Score=63.41  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=66.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -++++|||.|..++.-++.++. ++. +|.+|+|+++...          +  +....+.++++++||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            3589999999999999999884 565 7899999876421          1  2356789999999999999988665  


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                       .++..+.   ++||+.+..++.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             6676554   669999999985

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.38  E-value=0.00083  Score=69.42  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             CEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAA  219 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~  219 (300)
                      ++|+|||.|.||..+|..+. ..|++|+.+|.+++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            58999999999999999998 78999999998754210                0             0112344 5679


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE  286 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E  286 (300)
                      +||+|+=++|-+.+.+.-+-+++-+.++++++|...+.+  +....|.+.+.... ..+++--|.+-
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~-r~ig~Hff~P~  452 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPE-QVIGLHYFSPV  452 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCccc-ceEEEecCCcc
Confidence            999999999999888877777877889999987655444  45566777665432 24777766543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.37  E-value=0.00037  Score=55.74  Aligned_cols=83  Identities=18%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             EEEEEe-cChhHHHHHHHHHhC-CCEEE-EECCCCCCCC------C----C---cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          171 RVGIVG-LGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV------S----Y---PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       171 ~vgIiG-~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~------~----~---~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      +|+||| .|.+|+.+.++|... .+++. ++.++.....      +    .   .....-.+.+.++|+|++|+|.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            699999 999999999999974 34554 4555441111      0    0   01111234569999999999854433


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      +  +...+   +++|..+||.|.-
T Consensus        81 ~--~~~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 E--LAPKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             H--HHHHH---HHTTSEEEESSST
T ss_pred             H--HHHHH---hhCCcEEEeCCHH
Confidence            3  22222   5789999999743

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.36  E-value=0.00055  Score=60.24  Aligned_cols=91  Identities=23%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCE-EEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCS-ISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~-V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|||||+|.||+.+.+.+..-  +++ +.+||++.++..      +.....+++|++++.|+|+=|.. .++.+.    
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e----   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVRE----   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHH----
Confidence            4799999999999999998842  454 568888766432      22234679999999998888763 223332    


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      -..+.++.|-=+|-+|-|.+.|+.-
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHH
Confidence            2334456666667777788876543

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.35  E-value=0.0014  Score=67.76  Aligned_cols=114  Identities=16%  Similarity=0.149  Sum_probs=81.5

Q ss_pred             CEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAA  219 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~  219 (300)
                      ++|+|||.|.||+.+|..+. ..|++|+.+|.+++...                +             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999988 48999999998764210                0             0112344 4679


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      +||+|+=++|-+.+.+.-+-+++-+.++++++|.....+  +....|.+++.... ...++--|.+-+
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~-r~~g~HffnP~~  448 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPE-NVIGLHYFSPVE  448 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcc-cEEEEecCCccc
Confidence            999999999999888877777777888898876544333  44556666664432 236777665443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.34  E-value=0.0022  Score=57.17  Aligned_cols=104  Identities=23%  Similarity=0.335  Sum_probs=69.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE-CCCCC----------C------CCC----C--cccCCHHHH-hhc
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN-SRTKK----------P------SVS----Y--PFYSNVCEL-AAN  220 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~-~~~~~----------~------~~~----~--~~~~~l~e~-l~~  220 (300)
                      .++.|++|+|.|+|++|+.+|+.|..+|++|++. |....          .      ..+    +  ....+.+++ -.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            3578999999999999999999999999999844 43110          0      000    0  001122332 246


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ||+++-|.+     .+.|+.+....++ -.+++--+-+++ . ..-.+.|+++.|.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            899888864     3447777777776 345666666666 4 5566888888775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.31  E-value=0.00064  Score=61.72  Aligned_cols=108  Identities=18%  Similarity=0.302  Sum_probs=70.5

Q ss_pred             EEEEec-ChhHHHHHHHHHhCC----CEEEEECCCCCCCC-----------CC-----cccCCHHHHhhcCCEEEEecCC
Q 022233          172 VGIVGL-GSIGSLVAKRLDAFG----CSISYNSRTKKPSV-----------SY-----PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       172 vgIiG~-G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~-----------~~-----~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      |+|||. |.+|..+|..+...|    .+|..+|.+.+...           ..     ....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999998878    68999998764321           00     1124567899999999996521


Q ss_pred             C-----------hhhhhcchHH---HHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHhCCceEEE-eeC
Q 022233          231 T-----------AETHHMINKQ---VLSALGKEGVVINIGRGPIIDEQE--LVRC--LVQGEIKGAG-LDV  282 (300)
Q Consensus       231 ~-----------~~t~~li~~~---~l~~mk~ga~lIn~srg~~vd~~a--L~~a--L~~~~i~~a~-LDV  282 (300)
                      .           ..+-.++ .+   .+....|.+++||.+  .++|.-+  +.+.  +...++.|.+ ||.
T Consensus        81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence            0           0111111 22   233345889999995  5555443  4344  3567788888 775

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.30  E-value=0.00059  Score=64.16  Aligned_cols=81  Identities=16%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .++++|||.|.+|+..+..+.. .+. +|.+|+|+.+...          +.  ....++++++.+||+|++++|..   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~---  208 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE---  208 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence            5799999999999999988874 564 7899999865321          12  22468899999999999998754   


Q ss_pred             hhcchHHHHhcCCCCcEEEEc
Q 022233          235 HHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~  255 (300)
                      ..++..+.   +++|+.+..+
T Consensus       209 ~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        209 EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             CcEecHHH---cCCCceEEee
Confidence            35665443   5778766664

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.30  E-value=0.0013  Score=59.48  Aligned_cols=106  Identities=22%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC-----C--------------CCCC-----C------cccC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK-----K--------------PSVS-----Y------PFYS  212 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~-----~--------------~~~~-----~------~~~~  212 (300)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|+ +.|.+.     +              ....     +      ....
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            345889999999999999999999999999988 444210     0              0000     0      0111


Q ss_pred             CHHHH-hhcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          213 NVCEL-AANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       213 ~l~e~-l~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.+++ -..|||++-|     .+.+.|+.+..+.++  +-.+++-.+-|++-+  +-.+.|+++.|.
T Consensus       113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            33343 3568988887     356778888888774  345677777787644  455778888775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.30  E-value=0.00079  Score=62.51  Aligned_cols=83  Identities=17%  Similarity=0.136  Sum_probs=62.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -+++||||.|..|+..++.+.. +.. +|.+|+|++....          +  .....++++++++||+|+.++|.   +
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence            4699999999999999888775 454 7899999876421          2  22357899999999999999774   3


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +.++..+   .+|||+.+.-++.
T Consensus       194 ~P~~~~~---~l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRK---YLGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHH---HcCCCceEEecCC
Confidence            4677655   4678877666653

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.29  E-value=0.00063  Score=70.31  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..+...|++|..+|++.+...                +             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            4899999999999999999999999999998754210                0             0112344 45799


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE  286 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E  286 (300)
                      ||+|+=++|-+-+.+.-+-+++-+.++++++|-....+  ++-.+|...++... ...++=-|.+-
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~-r~ig~Hff~P~  455 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPE-NFCGMHFFNPV  455 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcc-cEEEEecCCCc
Confidence            99999999998888877777877888999887554433  45566667665432 23566655543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.29  E-value=0.00036  Score=55.06  Aligned_cols=102  Identities=26%  Similarity=0.347  Sum_probs=69.3

Q ss_pred             EEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAA--NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~  239 (300)
                      +|||||+|.+|+.....+...  ++++. ++++++...      .+...+.+++++++  +.|+|++++|......  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            799999999999999888866  45664 678875432      24456789999998  7899999999755444  22


Q ss_pred             HHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ...++.=+  .+++.- ---.+-+.++|.++.++.+..
T Consensus        80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence            33333211  455553 123556777777777765543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.28  E-value=0.00061  Score=65.24  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CC-C-EEEEECCCCCCCC-----------C---CcccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FG-C-SISYNSRTKKPSV-----------S---YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g-~-~V~~~~~~~~~~~-----------~---~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      -++++|||.|.+++..++.+.. +. . +|.+|+|++....           +   .....+.++++++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4699999999999999998876 43 4 7999999875311           1   223578999999999999998754


Q ss_pred             h---hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          232 A---ETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       232 ~---~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .   .+..+|..+   .+|+|+.++.++.-
T Consensus       235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence            3   344677654   46799888776553

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.25  E-value=0.0031  Score=55.85  Aligned_cols=104  Identities=23%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC----------CC------CCCCccc-----CCHHHHh-hcC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK----------KP------SVSYPFY-----SNVCELA-ANC  221 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~----------~~------~~~~~~~-----~~l~e~l-~~a  221 (300)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.          +.      ......+     .+-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            45789999999999999999999999999665 556544          10      0011111     1112332 478


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      |+++-|.+.     +.|+.+....++ -.+++--+-+++-+  .-.+.|+++.+.
T Consensus        99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            999988763     357777777776 34666677777654  345666666653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.22  E-value=0.001  Score=62.91  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             CCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      -++++|||.|..++..++.+. -+.. +|.+|+|+++...         +  .....++++++++||+|++++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            458999999999999888666 4555 7899999875421         1  223578999999999999998733 222


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .++..+   .+|+|+.+.-++
T Consensus       208 Pvl~~~---~lkpG~hV~aIG  225 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVG  225 (346)
T ss_pred             ceecHH---HcCCCcEEEecC
Confidence            456544   468999877765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.15  E-value=0.0027  Score=60.43  Aligned_cols=105  Identities=15%  Similarity=0.260  Sum_probs=80.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------VS-------------YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~l~~aDvV  224 (300)
                      |+|.|+|.|-+|...+..|+.+|++|+..|..+.+.            .+             .....+.+++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            589999999999999999999999999998765321            00             12345788899999999


Q ss_pred             EEecCCChhhhhcc--------hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          225 IICCGLTAETHHMI--------NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       225 ~l~~p~~~~t~~li--------~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ++++|..+...+-+        -++..+.++..+++|+=|+-.+=-.+.+.+.+.+..
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            99999654423322        245667787779999999999888888887776655

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.14  E-value=0.0011  Score=62.20  Aligned_cols=84  Identities=23%  Similarity=0.368  Sum_probs=58.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc------cCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF------YSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~------~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |++|+|+|+|-.|....+.++++|++|+++++++++.     .++..      .+.++++-+.+|+|+.++| ....   
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~---  242 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL---  242 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH---
Confidence            8899999999999999999999999999999987743     12221      1122333344999999998 4432   


Q ss_pred             chHHHHhcCCCCcEEEEcCCC
Q 022233          238 INKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg  258 (300)
                        ...++.++++..++-++=.
T Consensus       243 --~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         243 --EPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             --HHHHHHHhcCCEEEEECCC
Confidence              2445556666665555443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.14  E-value=0.001  Score=55.90  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---C-Ccc-cCCH-HHHhhcCCEEEEecCCChh
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---S-YPF-YSNV-CELAANCDILIICCGLTAE  233 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~-~~~-~~~l-~e~l~~aDvV~l~~p~~~~  233 (300)
                      |+  ..+|+|++|.|||.|.+|...++.|...|++|+++++...+..   + ... ...+ ++-+.++|+|+.++. +++
T Consensus         6 P~--~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e   82 (157)
T PRK06719          6 PL--MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHA   82 (157)
T ss_pred             ce--EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHH
Confidence            65  6789999999999999999999999999999998875432210   1 000 1112 234688998888765 444


Q ss_pred             hhhcc
Q 022233          234 THHMI  238 (300)
Q Consensus       234 t~~li  238 (300)
                      +...+
T Consensus        83 ~N~~i   87 (157)
T PRK06719         83 VNMMV   87 (157)
T ss_pred             HHHHH
Confidence            33333

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.13  E-value=0.0016  Score=56.98  Aligned_cols=80  Identities=26%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------C----------------C-C-----
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------V----------------S-Y-----  208 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~----------------~-~-----  208 (300)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|+..-..             .                + .     
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            45899999999999999999999999998 788887652100             0                0 0     


Q ss_pred             -cc--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          209 -PF--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       209 -~~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                       ..  ..+++++++++|+|+.++ .+..++.++++...+.
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~  135 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCT-DNFATRYLINDACVAL  135 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence             00  123456788999998886 4566777777655444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.08  E-value=0.0042  Score=56.30  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=46.1

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|+|+ |.||+.+++.+... ++++. ++++.....     .+...+.+++++++.+|+|+.++|.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p   70 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTP   70 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCH
Confidence            48999998 99999999998864 68875 477665332     1233457899999899999977753

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.08  E-value=0.0013  Score=62.00  Aligned_cols=58  Identities=28%  Similarity=0.456  Sum_probs=46.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC------ccc---CCHHHHhhcCCEEEE
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY------PFY---SNVCELAANCDILII  226 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~------~~~---~~l~e~l~~aDvV~l  226 (300)
                      +++|||||-|..|+.|+...+.+|++|.+.++++.... ..      ..+   ..+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            47999999999999999999999999999998765432 10      112   257789999999976

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.05  E-value=0.0026  Score=58.51  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C----Cccc---CCHHHHhhcCCEEEEecCCCh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S----YPFY---SNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~----~~~~---~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      +.|+++.|||.|.+|++++..|...|+ +|++++|+.++..      +    ....   .++.+.+.++|+||.++|...
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            568899999999999999999999998 7999999865321      0    0111   123355688999999999753


Q ss_pred             hhhhcchHHHH---------hcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          233 ETHHMINKQVL---------SALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       233 ~t~~li~~~~l---------~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .    ++...+         ..++++.+++|+--.+ .. ..|.++.++
T Consensus       203 ~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~-T~ll~~A~~  245 (282)
T TIGR01809       203 P----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WP-TPLVAIVSA  245 (282)
T ss_pred             C----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CC-CHHHHHHHH
Confidence            2    222221         1234667788886544 23 334444444

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.05  E-value=0.0026  Score=58.93  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC--c--ccCCHHHHhhcCCEEEEec
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY--P--FYSNVCELAANCDILIICC  228 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~--~--~~~~l~e~l~~aDvV~l~~  228 (300)
                      ++|+|||.|.||..+|..+...|. +|..+|++.+...             ..  .  ...+. +.+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            589999999999999999997765 8999998654321             00  0  11344 4589999999986

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.02  E-value=0.0029  Score=59.26  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +..++|+|||.|.||..+|..+...|. +|..+|.+++...             +.    ....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            556899999999999999999988885 8989998765321             10    112355 5689999999976


Q ss_pred             CCC----------------hhhhhcchHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE
Q 022233          229 GLT----------------AETHHMINKQV---LSALGKEGVVINIGRGPIIDEQELVRCLV--QGEIKGAG  279 (300)
Q Consensus       229 p~~----------------~~t~~li~~~~---l~~mk~ga~lIn~srg~~vd~~aL~~aL~--~~~i~~a~  279 (300)
                      -..                ..+..++ .++   +....|.+++|+++-..=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            221                1111112 122   23335677999998433333444444332  24666666

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.01  E-value=0.0076  Score=55.84  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=73.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC--CCCCCCcccCCHHHHhhcCCEEEEecCCChhh---hh------
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK--KPSVSYPFYSNVCELAANCDILIICCGLTAET---HH------  236 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~--~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t---~~------  236 (300)
                      .|++++|||-=.=-..++++|.+.|++|.++.-..  ....++....+.++++++||+|++-+|.+.+.   +.      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            37899999999989999999999999987644322  22235555567788999999999998865332   11      


Q ss_pred             -cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          237 -MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       237 -li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                       -++.+.++.|++|..++ ++.+..-    +-+.+++++|..
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~  117 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKL  117 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeE
Confidence             13578899999998544 4444322    335566777753

>PLN02477 glutamate dehydrogenase

Probab=97.01  E-value=0.0052  Score=59.39  Aligned_cols=105  Identities=22%  Similarity=0.357  Sum_probs=72.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC---C-CC----------------CCc--ccCCHHHH-hh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK---P-SV----------------SYP--FYSNVCEL-AA  219 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~---~-~~----------------~~~--~~~~l~e~-l~  219 (300)
                      |.++.|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+..   + ..                +..  ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            456899999999999999999999999999998 4454310   0 00                000  01122332 35


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .||+++-|.     ..+.|+++....++ -.+++-.+-+++ .. +-.+.|+++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            789888774     45668888888775 457788888887 33 445888888875

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.98  E-value=0.00031  Score=61.89  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CC-------------ccc
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------SY-------------PFY  211 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------~~-------------~~~  211 (300)
                      ...-+.|+|||.|.||+.+|+.....|++|+.+|++.+...                     ..             ...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            34457899999999999999999999999999998765310                     00             112


Q ss_pred             CCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          212 SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       212 ~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      .++.++++++|+|+=++--+-..+.-+-+++-...|+.+++. |+|.   +...++..+++.... .+||-.|.+-|.
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv  161 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV  161 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh
Confidence            456778888888877765444443333344444456666643 5554   445667777776655 489999987773

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.97  E-value=0.0091  Score=58.50  Aligned_cols=110  Identities=23%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             cCCCEEEEEec----ChhHHHHHHHHHhCCC--EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          167 LGGKRVGIVGL----GSIGSLVAKRLDAFGC--SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       167 l~g~~vgIiG~----G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++-++|+|||.    |++|..+.+.++..|+  +|+..++......+...+.+++|+-...|++++++|.. .+..++. 
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~-   82 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVE-   82 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHH-
Confidence            56789999999    8899999999999887  68878877666567777889999988899999999943 3444443 


Q ss_pred             HHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHhCCceEEE
Q 022233          241 QVLSALGKEGV-VINIGRGPI-----IDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       241 ~~l~~mk~ga~-lIn~srg~~-----vd~~aL~~aL~~~~i~~a~  279 (300)
                      +..+ ..-.++ ++.-+-++.     ..+++|.++.++..+.-.|
T Consensus        83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            3333 333344 443333332     3467888888888776443

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.0029  Score=61.30  Aligned_cols=63  Identities=22%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC-----cccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY-----PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~-----~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++.......     ......+....++|+|+.+.+..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~   70 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK   70 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence            4689999999999999999999999999999765432110     11123334457899888876544

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.92  E-value=0.0027  Score=58.56  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCC---CCC-----------C--Cc--cc---CCHHHHhhcCCEE
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKK---PSV-----------S--YP--FY---SNVCELAANCDIL  224 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~---~~~-----------~--~~--~~---~~l~e~l~~aDvV  224 (300)
                      +.++++.|+|.|.+|++++..|...|++ |.+++|+.+   ...           .  ..  ..   .++++.++.+|+|
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            5688999999999999999999999995 999998751   110           0  00  01   1234456778999


Q ss_pred             EEecCCCh--hhhh-cc-hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          225 IICCGLTA--ETHH-MI-NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       225 ~l~~p~~~--~t~~-li-~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      +.++|..-  .... .+ +   ...++++.+++|+--.+. .+.-|..|-+.|
T Consensus       204 INaTp~Gm~~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  252 (289)
T PRK12548        204 VNATLVGMKPNDGETNIKD---TSVFRKDLVVADTVYNPK-KTKLLEDAEAAG  252 (289)
T ss_pred             EEeCCCCCCCCCCCCCCCc---HHhcCCCCEEEEecCCCC-CCHHHHHHHHCC
Confidence            99998642  1111 12 2   244677889999977663 444444444443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.92  E-value=0.0066  Score=56.42  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC-------------CC--cccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV-------------SY--PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~-------------~~--~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|||.|.+|+.+|..|...|  .+|.++|++.+...             +.  .....-.+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            48999999999999999999888  47999998765421             00  011122345799999999986521


Q ss_pred             ---hhh-hcc--h-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          233 ---ETH-HMI--N-------KQVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       233 ---~t~-~li--~-------~~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                         .++ .++  |       ...+....+.+++|+++  .++|.-+
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~  124 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT  124 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence               111 111  1       11233346788999987  5555444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.91  E-value=0.00095  Score=59.38  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------CC-------CcccCCHHHH-hhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VS-------YPFYSNVCEL-AANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~-------~~~~~~l~e~-l~~aDvV~l~~p~~~~  233 (300)
                      |++.|+|+|..|..+|+.|...|++|+..++++...       ..       ......|+++ +.++|+++.++..+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            589999999999999999999999999988765431       11       1112346666 7899999999875543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.91  E-value=0.00084  Score=55.28  Aligned_cols=105  Identities=21%  Similarity=0.316  Sum_probs=70.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCC--------------cccCCHHHHhhcCCEEEEecCCChh
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSY--------------PFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~--------------~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      |+|+|.|.||..+|.+|+..|.+|..+.|.....    .+.              ....+..+....+|+|++++...+ 
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~-   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ-   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence            6899999999999999999999999988866100    010              001112356788999999987443 


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      ++..+ ..+...+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus        80 ~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   80 LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            34444 3466667787777776555 45567777777566665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.87  E-value=0.0034  Score=59.23  Aligned_cols=78  Identities=24%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC--------------------------------CCC--c
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS--------------------------------VSY--P  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~--------------------------------~~~--~  209 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-+.                                ...  .
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            35999999999999999999999999998 788887653100                                000  0


Q ss_pred             ------ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          210 ------FYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       210 ------~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                            ...+++++++++|+|+.++ .+.+++.+++.-..
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~  138 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ  138 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence                  0124567888899888887 56677766665443

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.84  E-value=0.0061  Score=59.46  Aligned_cols=106  Identities=17%  Similarity=0.279  Sum_probs=70.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE-CCCCC----C-----------------CCCCc-----ccCCHHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN-SRTKK----P-----------------SVSYP-----FYSNVCE  216 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~-~~~~~----~-----------------~~~~~-----~~~~l~e  216 (300)
                      +.++.|++|+|.|+|++|+.+|+.|..+|++|++. |.+..    .                 ...+.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            44689999999999999999999999999999876 52110    0                 00000     0112334


Q ss_pred             Hh-hcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          217 LA-ANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       217 ~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++ .+|||++-|..     .+.|+.+-...++  +-.+++-.+-+++  +.+-.+.|.++.|.
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence            33 36999988864     4557766666663  2357777888887  44455778887775

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.84  E-value=0.0039  Score=55.48  Aligned_cols=88  Identities=26%  Similarity=0.308  Sum_probs=60.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P--  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~--  209 (300)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-..             .+                 .  .  
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            35899999999999999999999999998 677776432100             00                 0  0  


Q ss_pred             --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                        .  ..++.+++.++|+|+.|+. +..++..+++...+.   +.-+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence              0  1234567889999988875 566777776555442   34455554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.80  E-value=0.0045  Score=57.49  Aligned_cols=107  Identities=17%  Similarity=0.232  Sum_probs=70.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCC-----------cccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSY-----------PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~-----------~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|+|.|.||..+|-.|...|.+|+.+.|..+.      ..+.           .......+.....|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            58999999999999999999999999988885321      1011           00011122346789999998543 


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      ++...+ +.+...+.+++.+|-.--| +-.++.+.+.+.+.++.++.
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence            333333 4566677888887777444 34566677777666665443

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.78  E-value=0.011  Score=57.67  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---CCCC---------------------------cccCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---SVSY---------------------------PFYSN  213 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---~~~~---------------------------~~~~~  213 (300)
                      |.+|.|++|.|.|+|++|+..|+.|..+|++|++.+.+...   ..+.                           ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            45799999999999999999999999999999874331110   0000                           00112


Q ss_pred             HHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          214 VCELA-ANCDILIICCGLTAETHHMINKQVLSALGK-EG-VVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       214 l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~-ga-~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .++++ ..|||++-|.     +++.|+.+....++. |. +++--+-| ++..++. +.|.++.|.
T Consensus       303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            23332 4688887763     467788888887764 44 44555555 6666665 455555553

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=96.77  E-value=0.0021  Score=58.28  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             HHHHHHhCC--CEEEEECCCCCCC-----CCCcc-cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233          184 VAKRLDAFG--CSISYNSRTKKPS-----VSYPF-YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       184 ~A~~l~~~g--~~V~~~~~~~~~~-----~~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~  255 (300)
                      +|+.|+..|  .+|+++|+++...     .+... ..+-.+.++++|+|++|+|.... ..+ -+++.+.+++|++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~-~~~-l~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAI-EDV-LEEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHH-HHH-HHHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHH-HHH-HHHhhhhcCCCcEEEEe
Confidence            577888777  7999999886532     13221 12226789999999999996553 333 46677789999999999


Q ss_pred             CCCcccCHHHHHHHHH
Q 022233          256 GRGPIIDEQELVRCLV  271 (300)
Q Consensus       256 srg~~vd~~aL~~aL~  271 (300)
                      +.-.---.+++.+.+.
T Consensus        79 ~SvK~~~~~~~~~~~~   94 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP   94 (258)
T ss_dssp             -S-CHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            8877544555555554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.77  E-value=0.0086  Score=57.91  Aligned_cols=87  Identities=20%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             cCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          167 LGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       167 l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      +.|++|+|+|+          ..-...+++.|...|.+|.+||+......  ......++++++++||+|+++..-.+- 
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~~-  389 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDEF-  389 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHHH-
Confidence            68999999998          55778999999999999999998754321  111246888999999999999874433 


Q ss_pred             hhcchHHHHhcCCCCcEEEEc
Q 022233          235 HHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~  255 (300)
                      +.+--+.....|+ ..+++|+
T Consensus       390 ~~~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       390 KDLDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             hccCHHHHHHhcC-CCEEEeC
Confidence            3222233344455 4588885

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.0027  Score=58.80  Aligned_cols=86  Identities=24%  Similarity=0.353  Sum_probs=57.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcc-------cCCHHHHhhcCCEEEEecCCChhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPF-------YSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~-------~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .|+.+||+|+|-+|.--.+.+++||++|++.+++..+.      .++..       .+-.+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            79999999999999999999999999999999875321      13221       112334555567666666532  1


Q ss_pred             hhcchHHHHhcCCCCcEEEEcC
Q 022233          235 HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ++-+ ...++.||++..+|-++
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEe
Confidence            2222 34566677776666554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.71  E-value=0.01  Score=55.49  Aligned_cols=103  Identities=8%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhCCCEEEEECCCCCCC-----------------------CC-------------CcccC--CHHHHhhcC
Q 022233          180 IGSLVAKRLDAFGCSISYNSRTKKPS-----------------------VS-------------YPFYS--NVCELAANC  221 (300)
Q Consensus       180 IG~~~A~~l~~~g~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~e~l~~a  221 (300)
                      ||..+|..+...|++|..+|++++..                       .+             .....  ++.+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            78999999999999999999887310                       00             01111  256788999


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      |+|+-++|.+.+.+.-+-.++.+.++++++|  +|.-+.+....|.+.++... +..++-.|.+
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~-r~~g~Hf~~P  141 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPE-RFLNAHWLNP  141 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcc-cEEEEecCCc
Confidence            9999999999999988888888889999998  44455567777887774321 1245554443

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.71  E-value=0.01  Score=49.77  Aligned_cols=96  Identities=11%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             CCCEEEEEec--ChhHHHHHHHHHhCCCEEEEECCCCC--CC----------------CCCcccCCHHHHhhcCCEEEEe
Q 022233          168 GGKRVGIVGL--GSIGSLVAKRLDAFGCSISYNSRTKK--PS----------------VSYPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       168 ~g~~vgIiG~--G~IG~~~A~~l~~~g~~V~~~~~~~~--~~----------------~~~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .|++|++||=  +++.++++..+..||+++.+..+..-  +.                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            3789999993  89999999999999999988877541  11                0123457999999999999876


Q ss_pred             cCC----Chh-------hhhcchHHHHhcCCCCcEEEEcC---CCcccCH
Q 022233          228 CGL----TAE-------THHMINKQVLSALGKEGVVINIG---RGPIIDE  263 (300)
Q Consensus       228 ~p~----~~~-------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~  263 (300)
                      .--    .+.       ..-.++++.++.+|++++|.-+.   ||.=|+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~  130 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSD  130 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEH
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCH
Confidence            544    111       11346889999999999999885   5644443

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.71  E-value=0.0027  Score=55.95  Aligned_cols=69  Identities=20%  Similarity=0.150  Sum_probs=51.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------C---CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------S---YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~---~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      .-+|.|++|.|||.|..|..=++.|...|.+|+++++...++.       .   .......++ +..+++|+.+++..+-
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~l   85 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEEL   85 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHH
Confidence            5679999999999999999999999999999999988763211       1   011223333 4449999999875543

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.70  E-value=0.0082  Score=56.83  Aligned_cols=94  Identities=17%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CC---Cc---ccC--CHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VS---YP---FYS--NVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~---~~---~~~--~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|+|. |.+|+.+++.|..+ +.++. .++++....      .+   ..   .+.  +.++++.++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            48999998 99999999999977 56776 434332111      01   00   112  45566678999999999553


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      ..+ +. ...   .+.|..+||.|..-=.+..++++
T Consensus        81 s~~-~~-~~~---~~~G~~VIDlS~~fR~~~~~~y~  111 (346)
T TIGR01850        81 SAE-LA-PEL---LAAGVKVIDLSADFRLKDPEVYE  111 (346)
T ss_pred             HHH-HH-HHH---HhCCCEEEeCChhhhcCChhhhH
Confidence            322 22 222   25789999998554455434333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.70  E-value=0.004  Score=60.53  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=65.9

Q ss_pred             CEEEEEecChhHHHHHH---HH---HhCCCEEEEECCCCCCCC-----------------CCcccCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGLGSIGSLVAK---RL---DAFGCSISYNSRTKKPSV-----------------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~---~l---~~~g~~V~~~~~~~~~~~-----------------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      .+|+|||.|.+|.+.+-   .+   ...|.+|..||++++...                 ......++++++++||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998655   22   334679999998764211                 11224578899999999999


Q ss_pred             ecCCChh---hh--------h-------------c--------chHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 022233          227 CCGLTAE---TH--------H-------------M--------INKQVLSALG---KEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       227 ~~p~~~~---t~--------~-------------l--------i~~~~l~~mk---~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      ++|....   .+        +             +        +-.++.+.++   |.++++|.+-..-+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            9983110   00        0             0        1123333333   688999988777666667666543

linked to 3D####ucture

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.68  E-value=0.0038  Score=48.78  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          179 SIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       179 ~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      .-+..+++.|+..|++|.+||+.-....        +.....++++.++.+|+|+++++-.. -..+--..+...|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCC
Confidence            4567899999999999999998754321        23345689999999999999987443 33333455667788999


Q ss_pred             EEEEc
Q 022233          251 VVINI  255 (300)
Q Consensus       251 ~lIn~  255 (300)
                      +|||+
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.68  E-value=0.0043  Score=59.53  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhC-CCEEEEECCCCCCCC-----C-------CcccCCHHH-HhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAF-GCSISYNSRTKKPSV-----S-------YPFYSNVCE-LAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~-----~-------~~~~~~l~e-~l~~aDvV~l~~p~~  231 (300)
                      ...++|+|+|. |.+|+.+.+.|... +++|..+.+......     .       .....+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45669999998 89999999999987 678876654322111     0       011122232 258899999999853


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~a  269 (300)
                            ...++...|+.|..+||.|..--.+.++.++.
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~  147 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYEE  147 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence                  23344455667899999997766666655543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.67  E-value=0.0091  Score=55.12  Aligned_cols=106  Identities=18%  Similarity=0.223  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC---CCC------C----C-cccCCH------HHHhhcCCEE
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK---PSV------S----Y-PFYSNV------CELAANCDIL  224 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~---~~~------~----~-~~~~~l------~e~l~~aDvV  224 (300)
                      .+.|+++.|+|.|..+++++-.|...|. +|++++|+..   +..      .    . ....++      .+.+.++|+|
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            3678999999999999999999998897 7999999853   110      0    0 011222      3355679999


Q ss_pred             EEecCCChh--hhh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          225 IICCGLTAE--THH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       225 ~l~~p~~~~--t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      +.++|..-.  ... ++..  ...++++.++.|+--.+. . ..|+++.++..+
T Consensus       201 INaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~-T~ll~~A~~~G~  250 (288)
T PRK12749        201 TNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH-M-TKLLQQAQQAGC  250 (288)
T ss_pred             EECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc-c-CHHHHHHHHCCC
Confidence            999996432  111 1111  234678889999976653 3 345555555443

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.65  E-value=0.013  Score=53.40  Aligned_cols=100  Identities=22%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             CEEEEEe-cChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------------VSYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------------~~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      .+|+|+| +|+||+.+++.+.. -++++. ++++.....             .+...+.+++++...+|+|+.+.|... 
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~-   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG-   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence            4899999 69999999999885 578875 467432211             123345678888667899999885322 


Q ss_pred             hhhcchHHHHhcCCCCc-EEEEcCCCccc-CHHHHHHHHHhCCc
Q 022233          234 THHMINKQVLSALGKEG-VVINIGRGPII-DEQELVRCLVQGEI  275 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga-~lIn~srg~~v-d~~aL~~aL~~~~i  275 (300)
                      ..    ......++.|. +++-+ .|--. +.+.|.++.++.++
T Consensus        81 ~~----~~~~~al~~g~~vVigt-tg~~~e~~~~l~~aA~~~g~  119 (266)
T TIGR00036        81 VL----NHLKFALEHGVRLVVGT-TGFSEEDKQELADLAEKAGI  119 (266)
T ss_pred             HH----HHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHHHhcCCc
Confidence            22    22233344443 44444 35322 34445555555443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.65  E-value=0.0085  Score=55.86  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHh-------CCCEEEEECCCCC--C------------CC------------CCcccCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDA-------FGCSISYNSRTKK--P------------SV------------SYPFYSN  213 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~-------~g~~V~~~~~~~~--~------------~~------------~~~~~~~  213 (300)
                      -.-++|+|||.|+-|+++|+.+..       |..+|..|-+...  .            ..            ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            335699999999999999998862       2335544422111  0            00            1123468


Q ss_pred             HHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          214 VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       214 l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      +.+++.+||+++..+|.+---+  |.+++..+.|+++..|.+..|=
T Consensus        99 l~ea~~dADilvf~vPhQf~~~--ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQFIPR--ICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChhhHHH--HHHHHhcccCCCCeEEEeecce
Confidence            9999999999999999654333  5578889999999999998773

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.64  E-value=0.011  Score=57.69  Aligned_cols=120  Identities=23%  Similarity=0.282  Sum_probs=75.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc--CCHHHHhhcCCEEEEecCCChhhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY--SNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ..+++|.|+|+|.-|.++|+.|+..|++|+++|.++.+.         .+....  ....+.+.++|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            449999999999999999999999999999999765541         111111  1122678889999986 3322222


Q ss_pred             h-----------cch-HHHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHh--------CCceEEEeeCCCCCC
Q 022233          236 H-----------MIN-KQVLSAL--GKEGVVINIGRGPIIDEQELVRCLVQ--------GEIKGAGLDVFENEP  287 (300)
Q Consensus       236 ~-----------li~-~~~l~~m--k~ga~lIn~srg~~vd~~aL~~aL~~--------~~i~~a~LDV~~~EP  287 (300)
                      .           ++. -++|-..  ++..+-|-=+-|.---+.-+...|++        |+|...++|+.++++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            2           221 1233332  22244444456665555555555543        677888899988743

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.64  E-value=0.0091  Score=58.15  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=71.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEE--------ECCCCCC--C---------------------C-CCccc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY--------NSRTKKP--S---------------------V-SYPFY  211 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~--------~~~~~~~--~---------------------~-~~~~~  211 (300)
                      |.+|.|+||.|=|+|++|+..|+.|..+|++|+.        |++..-.  .                     . +... 
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~-  301 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTF-  301 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEE-
Confidence            4568999999999999999999999999999987        5532111  0                     0 1111 


Q ss_pred             CCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          212 SNVCELA-ANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       212 ~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .+.++++ ..||+++-|.     +++.|+.+....+.  +-.+++--+-+ ++..+|- +.|+++.|.
T Consensus       302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence            1223333 4588887763     56778887777772  23467777777 5665544 777777774

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.63  E-value=0.0044  Score=57.93  Aligned_cols=96  Identities=23%  Similarity=0.339  Sum_probs=60.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCCC-------C-------cccCCHHHHhhcCCEEEEecCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSVS-------Y-------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~-------~-------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .+++|+|||.|.+|..+|-.+...|.  ++..+|++.....+       .       ....+..+.+++||+|+++.-..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            46799999999999999999998887  79999986653210       0       11112335689999999976431


Q ss_pred             --h-hhh-hcc--h----HHHHh---cCCCCcEEEEcCCCcccCHHH
Q 022233          232 --A-ETH-HMI--N----KQVLS---ALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 --~-~t~-~li--~----~~~l~---~mk~ga~lIn~srg~~vd~~a  265 (300)
                        + .++ .++  |    ++...   .-.+.+++|+++  .++|.-.
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs--NP~d~~~  129 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS--NPVDILT  129 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--CcHHHHH
Confidence              1 122 111  1    12222   234688999987  4444433

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.63  E-value=0.007  Score=54.54  Aligned_cols=80  Identities=24%  Similarity=0.376  Sum_probs=55.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P--  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~--  209 (300)
                      ..|.+++|+|||+|.+|..+|+.|...|. ++.++|...-..             .+                 .  .  
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999997 677776432110             00                 0  0  


Q ss_pred             --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                        .  ..+..++++++|+|+.++ .+.+++..+++...+.
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~  146 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA  146 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh
Confidence              0  112456788999888886 4666777776555443

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.61  E-value=0.0085  Score=53.82  Aligned_cols=80  Identities=26%  Similarity=0.386  Sum_probs=56.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P--  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~--  209 (300)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-..             .+                 .  .  
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            35899999999999999999999999997 677776542210             00                 0  0  


Q ss_pred             --c--cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          210 --F--YSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       210 --~--~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                        .  ..++.+++.++|+|+.++ .+.+++..+++...+.
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~  138 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA  138 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence              0  023556788899888876 4667777776655443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.60  E-value=0.0078  Score=56.20  Aligned_cols=107  Identities=17%  Similarity=0.280  Sum_probs=65.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC----c-c-cCCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------SY----P-F-YSNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~~----~-~-~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ..+|+|||.|.+|.++|-.|...|.  ++..+|.+.+...          .+    . . ..+.++ +++||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence            3599999999999999999987665  6888988764321          00    1 1 134554 8999999996542


Q ss_pred             C--h-hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHhCCceEE
Q 022233          231 T--A-ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE--LVRC--LVQGEIKGA  278 (300)
Q Consensus       231 ~--~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a--L~~a--L~~~~i~~a  278 (300)
                      .  + .++ .++  |.       +.+....+.+++|+++  .++|.-+  +.+.  +...++.|.
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence            1  1 233 111  11       1233346789999998  4455433  2232  334565555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.59  E-value=0.0045  Score=60.21  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------cccCCHHHH-hhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSY-------PFYSNVCEL-AANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~  233 (300)
                      |+|.|+|+|.+|+.+|+.|...|++|.+.+++++..      .+.       .....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            579999999999999999999999999998865421      111       112345555 7889999999886544

>PRK11579 putative oxidoreductase; Provisional

Probab=96.58  E-value=0.016  Score=54.56  Aligned_cols=64  Identities=20%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCcccCCHHHHhh--cCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS----VSYPFYSNVCELAA--NCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.||+. .+..++.. ++++. +++++.+..    .....+.+++++++  +-|+|++++|....
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            48999999999985 56666543 67875 577764321    12345689999996  47999999997544

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.56  E-value=0.0089  Score=56.52  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC-CCEEEE-ECCCCCCC-C----C-Cc-----ccCCHHH-HhhcCCEEEEecCCChhh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF-GCSISY-NSRTKKPS-V----S-YP-----FYSNVCE-LAANCDILIICCGLTAET  234 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~-~~~~~~~~-~----~-~~-----~~~~l~e-~l~~aDvV~l~~p~~~~t  234 (300)
                      ++|+|+|. |.+|+.+++.|... ++++.. .++..... .    + ..     .+.++++ ...++|+|++|+|.....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            58999997 99999999999976 567654 55332211 0    0 11     1223332 457899999999965432


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      + ++ .   ..++.|..+||.|-.=-.+..++
T Consensus        83 ~-~v-~---~a~~aG~~VID~S~~fR~~~~~~  109 (343)
T PRK00436         83 D-LA-P---QLLEAGVKVIDLSADFRLKDPEV  109 (343)
T ss_pred             H-HH-H---HHHhCCCEEEECCcccCCCCchh
Confidence            2 21 2   22357899999985544544333

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.015  Score=57.09  Aligned_cols=108  Identities=11%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCccc--CCHHHHhhcCCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFY--SNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~--~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|......          .+....  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            3678999999999999999999999999999999764321          122111  1224556889999887 53322


Q ss_pred             hhh-----------cchH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          234 THH-----------MINK-QVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       234 t~~-----------li~~-~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      +..           ++++ +.+ ...+...+-|-=+.|..--.+-|...|+...
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            221           2221 122 2223234555556788777777777776543

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.52  E-value=0.012  Score=52.96  Aligned_cols=80  Identities=14%  Similarity=0.176  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          181 GSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       181 G~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |..||-.++..|++|...+++.+-..          +.....+=.++.+++.+.++-.|....|-++. +++++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            67899999999999999988765321          44445566688999999999999998877654 78999999999


Q ss_pred             EEEEcCCCccc
Q 022233          251 VVINIGRGPII  261 (300)
Q Consensus       251 ~lIn~srg~~v  261 (300)
                      ++.|+.+-+.+
T Consensus       112 VicnTCT~sp~  122 (340)
T COG4007         112 VICNTCTVSPV  122 (340)
T ss_pred             EecccccCchh
Confidence            99999987765

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.52  E-value=0.0049  Score=55.74  Aligned_cols=97  Identities=21%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-----------CCCCcccCCHHHHhhcCCEEEEecCCC
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-----------SVSYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-----------~~~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      |.+|+..+++|+|+ |.||..+|+.|.+.+......-|....           ..+.....+++..+.+.|+++-.....
T Consensus       162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~  241 (351)
T COG5322         162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP  241 (351)
T ss_pred             CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC
Confidence            88999999999997 999999999999888765444322110           112233456665555555444433222


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      +  -..|+.+.   +|||+++||-++..=||+.-
T Consensus       242 ~--g~~I~pq~---lkpg~~ivD~g~P~dvd~~v  270 (351)
T COG5322         242 K--GVEIFPQH---LKPGCLIVDGGYPKDVDTSV  270 (351)
T ss_pred             C--Cceechhh---ccCCeEEEcCCcCccccccc
Confidence            2  23465544   78999999999998887753

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.52  E-value=0.014  Score=52.72  Aligned_cols=34  Identities=18%  Similarity=0.493  Sum_probs=30.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .++-|+|.|.+++++|+.++.+|++|+++|.+++
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            3899999999999999999999999999886644

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.52  E-value=0.015  Score=51.30  Aligned_cols=80  Identities=30%  Similarity=0.393  Sum_probs=54.9

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------------CC-----------------Cc-----
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------------VS-----------------YP-----  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------------~~-----------------~~-----  209 (300)
                      ..|.+++|+|||+|.+|..+|+.|...|. ++..+|...-..            .+                 ..     
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            35899999999999999999999999998 588777652100            00                 00     


Q ss_pred             ---ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          210 ---FYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       210 ---~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                         ...+++++++++|+|+.++ .+.+++..++....+.
T Consensus       104 ~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~  141 (212)
T PRK08644        104 EKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH  141 (212)
T ss_pred             eecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence               0113446788999988885 4556666666554443

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.51  E-value=0.011  Score=55.93  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=42.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEE-ECCCCCCC------------------------CCCcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISY-NSRTKKPS------------------------VSYPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~-~~~~~~~~------------------------~~~~~~~~l~e~l~~aDv  223 (300)
                      .+|||+|+|+||+.+++.+... ++++.+ .++.++..                        .+.....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            3899999999999999988754 577764 44332100                        011122467788889999


Q ss_pred             EEEecCCC
Q 022233          224 LIICCGLT  231 (300)
Q Consensus       224 V~l~~p~~  231 (300)
                      |+.+.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.47  E-value=0.0061  Score=56.40  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=42.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecC
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |+|||.|.||..+|..+...|. +|..+|++++...             ..    ....+. +.+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999987665 9999998754311             00    111344 45899999999773

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.46  E-value=0.0049  Score=57.38  Aligned_cols=61  Identities=25%  Similarity=0.307  Sum_probs=46.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCCC-------Cc--------ccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSVS-------YP--------FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~~-------~~--------~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++.....+       ..        ...+. +.+++||+|+++.+..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            47999999999999999999888  479999987643211       10        11233 5689999999999863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.44  E-value=0.0033  Score=49.31  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHH-HhhcCCEEEEecCCChhhhhcc
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCE-LAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e-~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      |.|+|+|.+|+.+++.|+..+.+|.+.+++++..     .+..       ....+++ -++++|.|+++.+....+.  .
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence            5799999999999999999777999988876431     1211       1123443 3688999999988554433  3


Q ss_pred             hHHHHhcCCCCcEEE
Q 022233          239 NKQVLSALGKEGVVI  253 (300)
Q Consensus       239 ~~~~l~~mk~ga~lI  253 (300)
                      -...+..+-+...+|
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            334455555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.43  E-value=0.021  Score=51.42  Aligned_cols=105  Identities=26%  Similarity=0.383  Sum_probs=68.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE--------CCCCCC---------CCC--Cccc----------CCHH
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN--------SRTKKP---------SVS--YPFY----------SNVC  215 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~--------~~~~~~---------~~~--~~~~----------~~l~  215 (300)
                      .++.|+++.|-|+|++|+.+|+.|...|++|...        ++..-.         ..+  ...+          .+-+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~  107 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND  107 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence            3588999999999999999999999999988655        221100         001  1111          1222


Q ss_pred             -HHh-hcCCEEEEecCCChhhhhcchHHHHh-cCCCCcE-EEEcCCCcccCHHHHHHHHHhCCce
Q 022233          216 -ELA-ANCDILIICCGLTAETHHMINKQVLS-ALGKEGV-VINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       216 -e~l-~~aDvV~l~~p~~~~t~~li~~~~l~-~mk~ga~-lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       +++ ..||+++-|.     ..+.|+.+... .++.++- ++--+-+++ ..++.. .|+++.|.
T Consensus       108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL  165 (244)
T ss_dssp             CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred             cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence             455 6899999983     34557777777 7765654 555556665 555555 88888874

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.42  E-value=0.0062  Score=49.90  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV  251 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~  251 (300)
                      +-|+|.|.+++++++.++.+|++|+++|++++.             +..++-+. +.+. ++..     +.+ .+.++..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence            469999999999999999999999998876431             12344322 2221 1110     111 3556666


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          252 VINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       252 lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      +| +.++.-.|.+.|.++|++ .....|
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            65 788888888888888876 344444

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.41  E-value=0.026  Score=54.99  Aligned_cols=105  Identities=16%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC----------CC--------------C-------CCccc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK----------PS--------------V-------SYPFY  211 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~----------~~--------------~-------~~~~~  211 (300)
                      +.+|.|+||.|=|+|++|+..|+.|..+|.+|+ +.|.+..          ..              .       ++.. 
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~-  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY-  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-
Confidence            456899999999999999999999999999988 5554410          00              0       0011 


Q ss_pred             CCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcC-CCCcEE-EEcCCCcccCHHHHHHHHHhCCce
Q 022233          212 SNVCELA-ANCDILIICCGLTAETHHMINKQVLSAL-GKEGVV-INIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       212 ~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~m-k~ga~l-In~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .+.++++ ..||+.+-|.     +.+.|+.+..+.+ +.++.+ +--+-+++ ..+ -.+.|++++|.
T Consensus       311 ~~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        311 VPGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI  371 (454)
T ss_pred             eCCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence            1122222 4688877763     5667887776655 445554 45555554 444 44677777764

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.39  E-value=0.008  Score=55.30  Aligned_cols=104  Identities=24%  Similarity=0.297  Sum_probs=73.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C----CcccCCHHHH--hhcCCEEEEecCCCh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S----YPFYSNVCEL--AANCDILIICCGLTA  232 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~----~~~~~~l~e~--l~~aDvV~l~~p~~~  232 (300)
                      ...|+++.|+|.|-.+++++..|+..|. +|++++|+.+...      +    ......+.++  ..++|+||.++|..-
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm  202 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM  202 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence            4679999999999999999999999996 7999999875421      1    0011222222  226999999999764


Q ss_pred             hhh---hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          233 ETH---HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       233 ~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .-.   .+++   ...++++.++.|+--.+. ++.-|..|=+.|
T Consensus       203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            432   2344   566889999999987775 555555554445

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.39  E-value=0.0082  Score=57.28  Aligned_cols=58  Identities=24%  Similarity=0.445  Sum_probs=44.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----C------CcccCCHHHHhhcCCEEEE
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S------YPFYSNVCELAANCDILII  226 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~------~~~~~~l~e~l~~aDvV~l  226 (300)
                      .++|||||.|..|+.++..++.+|++|.++++++....    .      ....+.+.++++.+|+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            37899999999999999999999999999988654321    0      1111246678889998864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.39  E-value=0.045  Score=48.93  Aligned_cols=121  Identities=22%  Similarity=0.249  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C-----c
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y-----P  209 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~-----~  209 (300)
                      .|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-..             .+                 .     .
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            5889999999999999999999999998 777776432100             00                 0     0


Q ss_pred             -c--cCCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHHH
Q 022233          210 -F--YSNVCELA-ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIID-----------------EQELVR  268 (300)
Q Consensus       210 -~--~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd-----------------~~aL~~  268 (300)
                       .  ..+.++++ .+.|+|+.++-.. ..+-.+++.....  .=.++...+-|.-.|                 ...+-.
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD~~-~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~  164 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAIDSI-RAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK  164 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence             0  12345565 3689999987533 3333333332221  123444455554433                 345667


Q ss_pred             HHHhCCceEEEeeCCCCCCCC
Q 022233          269 CLVQGEIKGAGLDVFENEPDV  289 (300)
Q Consensus       269 aL~~~~i~~a~LDV~~~EP~~  289 (300)
                      .|++.++..-.-=||..|++.
T Consensus       165 ~Lrk~~~~~~~~~v~S~E~~~  185 (231)
T cd00755         165 RLRKRGIFFGVPVVYSTEPPD  185 (231)
T ss_pred             HHHHcCCCCCeEEEeCCCCCC
Confidence            788888852233478888653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.37  E-value=0.024  Score=55.93  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC---------------------------CC
Q 022233          166 KLGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV---------------------------SY  208 (300)
Q Consensus       166 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------------------------~~  208 (300)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+.-....                           ..
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            478999999998          56788999999999999999998633210                           01


Q ss_pred             cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          209 PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       209 ~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ....++.+++++||+|+++..-.+ -+.+--+.....|++..+++|. |+- .|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence            223456789999999999987443 3333234445668766689995 554 4655553

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.35  E-value=0.0062  Score=59.85  Aligned_cols=89  Identities=19%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-C---cccCCHHHHhhcCCEEEEecC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-Y---PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~---~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |+  -.+|+|++|.|||.|.++..=++.|..+|.+|+++.+.-.+..      + .   .... .++.++.+++|+.++.
T Consensus         5 P~--~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~~~dl~~~~lv~~at~   81 (457)
T PRK10637          5 PI--FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPF-DESLLDTCWLAIAATD   81 (457)
T ss_pred             ce--EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-ChHHhCCCEEEEECCC
Confidence            55  5689999999999999999999999999999999876543221      1 0   0111 2355788998888865


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ..+     +|+.+....+...+++|++
T Consensus        82 d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         82 DDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             CHH-----HhHHHHHHHHHcCcEEEEC
Confidence            433     3444444444444555543

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.34  E-value=0.067  Score=50.44  Aligned_cols=91  Identities=8%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|++|++||-+  ++.++++..+..+|++|.+..+..- +.             .+  +....++++++++||+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4779999999986  6788899999999999988776421 11             12  22357899999999999873


Q ss_pred             c----CCCh---hh------hhcchHHHHhcC-CCCcEEEEcC
Q 022233          228 C----GLTA---ET------HHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       228 ~----p~~~---~t------~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      .    ....   ..      .-.++++.++.. |++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    1100   11      113577888876 7888888764

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.32  E-value=0.032  Score=51.95  Aligned_cols=98  Identities=17%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCCCCCCC---CCcccCCHHHHhhcCCEEEEecCC--------Ch
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRTKKPSV---SYPFYSNVCELAANCDILIICCGL--------TA  232 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~~~~~~~l~e~l~~aDvV~l~~p~--------~~  232 (300)
                      +.|++|+++|-   +++..+++..+..+|+++.+..+..-...   ......++++++++||+|....=-        .+
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~  233 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP  233 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence            67899999998   58999999999999999988776432211   123467899999999999875310        01


Q ss_pred             hh-----hhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          233 ET-----HHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       233 ~t-----~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      .-     .-.++++.++.++++++|.-+-   ||.=|+.+
T Consensus       234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~  273 (305)
T PRK00856        234 SYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD  273 (305)
T ss_pred             HHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence            11     1245788888889998888774   66545443

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.31  E-value=0.014  Score=54.44  Aligned_cols=104  Identities=22%  Similarity=0.317  Sum_probs=68.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC-C-----C------CC----CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK-P-----S------VS----YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~-~-----~------~~----~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|.|+|.|.||..++-+|...|..|+.+.|.+. .     .      .+    ........+.+..+|+|++++-..+ 
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q-   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ-   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc-
Confidence            5899999999999999999999988888777653 1     0      01    0112233456679999999986443 


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +... -+.+.+.+++.++++-+--| +=.++.+.....+.++.
T Consensus        80 ~~~a-l~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il  120 (307)
T COG1893          80 LEEA-LPSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL  120 (307)
T ss_pred             HHHH-HHHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE
Confidence            3333 35677778888776655333 33444666666555453

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.31  E-value=0.017  Score=44.23  Aligned_cols=70  Identities=24%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             CCEEEEEecChhHHHHHHHHH-hCCCEE-EEECCCCCCC----CCCcccCCHHHHhhc--CCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSLVAKRLD-AFGCSI-SYNSRTKKPS----VSYPFYSNVCELAAN--CDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~-~~g~~V-~~~~~~~~~~----~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~  239 (300)
                      ..++.|+|+|+.|++++.... ..|+.+ .++|.++...    .+...+.+++++.+.  .|+-++++|... .+..+.
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~-a~~~~~   80 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA-AQEVAD   80 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH-HHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH-HHHHHH
Confidence            348999999999999985444 567654 4666655432    134445578887776  999999998543 343333

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.30  E-value=0.023  Score=53.73  Aligned_cols=107  Identities=16%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhC----------CCEEE-EECCCCC-------CC---------CC-Cc------ccCCHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF----------GCSIS-YNSRTKK-------PS---------VS-YP------FYSNVC  215 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~----------g~~V~-~~~~~~~-------~~---------~~-~~------~~~~l~  215 (300)
                      .+|||+|+|.||+.+++.+...          +.+|. +.|++..       ..         .+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3899999999999999998754          45654 4454211       00         00 01      123788


Q ss_pred             HHhh--cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCce
Q 022233          216 ELAA--NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEIK  276 (300)
Q Consensus       216 e~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i~  276 (300)
                      +++.  +.|+|+.++|....+...--.-....++.|.-+|-...+.+ ...++|.++.++.++.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            8874  67999999996554321111223455666766665444443 2456777777776553

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.29  E-value=0.0041  Score=59.43  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             EEEEecChhHHHHHHHHHhCC-C-EEEEECCCCCCC-------C--C-------CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          172 VGIVGLGSIGSLVAKRLDAFG-C-SISYNSRTKKPS-------V--S-------YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g-~-~V~~~~~~~~~~-------~--~-------~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      |+|+|.|.+|+.+++.|...+ . +|++.+|+.+..       .  .       .....++.++++++|+|+.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            789999999999999999766 4 899998876531       1  1       111234778999999999999754 1


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ...+    ....++.|.-.||++- -.-...+|.+..++.++
T Consensus        80 ~~~v----~~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~  116 (386)
T PF03435_consen   80 GEPV----ARACIEAGVHYVDTSY-VTEEMLALDEEAKEAGV  116 (386)
T ss_dssp             HHHH----HHHHHHHT-EEEESS--HHHHHHHCHHHHHHTTS
T ss_pred             hHHH----HHHHHHhCCCeeccch-hHHHHHHHHHHHHhhCC
Confidence            1111    2233456778888433 11233344444444444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.28  E-value=0.002  Score=53.05  Aligned_cols=93  Identities=22%  Similarity=0.343  Sum_probs=58.9

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCC-
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGL-  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~-  230 (300)
                      ++|+|||. |.+|+.+|-.|...+.  ++..+|+......               .........+.+++||+|+++.-. 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            48999999 9999999999986664  7999998753211               011223567889999999998733 


Q ss_pred             -Ch-hhh-hcc--hHH-------HHhcCCCCcEEEEcCCCcccCHH
Q 022233          231 -TA-ETH-HMI--NKQ-------VLSALGKEGVVINIGRGPIIDEQ  264 (300)
Q Consensus       231 -~~-~t~-~li--~~~-------~l~~mk~ga~lIn~srg~~vd~~  264 (300)
                       .+ +++ .++  |.+       .+....+.++++.++  .++|.-
T Consensus        81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd~~  124 (141)
T PF00056_consen   81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVDVM  124 (141)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHHHH
T ss_pred             ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHHHH
Confidence             22 112 111  111       223335778888883  446633

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.25  E-value=0.1  Score=54.16  Aligned_cols=138  Identities=13%  Similarity=0.182  Sum_probs=96.5

Q ss_pred             CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233          108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR  187 (300)
Q Consensus       108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~  187 (300)
                      +|+|.|.. .  ..+|=.+++-+++.+|-.                          |..+...+|.|.|.|.-|-.+|+.
T Consensus       153 ~ip~f~DD-~--~GTa~v~lA~l~na~~~~--------------------------~~~~~~~~iv~~GaGaag~~~a~~  203 (752)
T PRK07232        153 DIPVFHDD-Q--HGTAIISAAALLNALELV--------------------------GKKIEDVKIVVSGAGAAAIACLNL  203 (752)
T ss_pred             CCCeeccc-c--chHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEECccHHHHHHHHH
Confidence            57777763 2  244556666666665531                          456788999999999999999999


Q ss_pred             HHhCCC---EEEEECCCCC----C-C--C-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          188 LDAFGC---SISYNSRTKK----P-S--V-------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       188 l~~~g~---~V~~~~~~~~----~-~--~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |...|.   +++.+|+..-    . .  .       ......+|.|+++.+|+++=. .    +.++++++.++.|.+.+
T Consensus       204 l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~p  278 (752)
T PRK07232        204 LVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNP  278 (752)
T ss_pred             HHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence            999998   6888876421    1 0  0       001235899999999977754 2    14789999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      ++.=.|.....-..+.......+.|.+.|
T Consensus       279 iifalsNP~~E~~p~~a~~~~~~~i~atG  307 (752)
T PRK07232        279 IIFALANPDPEITPEEAKAVRPDAIIATG  307 (752)
T ss_pred             EEEecCCCCccCCHHHHHHhcCCEEEEEC
Confidence            99999988864233333333334566665

>PRK08223 hypothetical protein; Validated

Probab=96.22  E-value=0.024  Score=52.21  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45999999999999999999999999998 67776643

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.21  E-value=0.0075  Score=60.35  Aligned_cols=104  Identities=19%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC--cccCCHHHH-hhcCCEEEEecCCChh--h
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY--PFYSNVCEL-AANCDILIICCGLTAE--T  234 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~--~~~~~l~e~-l~~aDvV~l~~p~~~~--t  234 (300)
                      .+.++++.|+|.|.+|++++..|...|++|++++|+.+...      +.  ....++.+. ...+|+|+.+.|..-.  +
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~  455 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV  455 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence            47789999999999999999999999999999998754311      11  111222222 2357888888875421  1


Q ss_pred             hh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          235 HH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       235 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .. .++.   ..+++..+++|+.-.+. ++.-|..|-+.|
T Consensus       456 ~~~pl~~---~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  491 (529)
T PLN02520        456 DETPISK---HALKHYSLVFDAVYTPK-ITRLLREAEESG  491 (529)
T ss_pred             CCCcccH---hhCCCCCEEEEeccCCC-cCHHHHHHHHCC
Confidence            11 1332   34677888899876653 344444444444

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.18  E-value=0.075  Score=49.46  Aligned_cols=90  Identities=12%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CcccCCHHHHhhcCCEEEEec-
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS--------------VS--YPFYSNVCELAANCDILIICC-  228 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------------~~--~~~~~~l~e~l~~aDvV~l~~-  228 (300)
                      +.|.+|+++|- +++-++++..+..+|++|.+..+..-..              .+  .....++++++++||+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            67899999997 7889999999999999998776543211              11  123578999999999998843 


Q ss_pred             -CCC-----hh-----hhhcchHHHHhcCCCCcEEEEcC
Q 022233          229 -GLT-----AE-----THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       229 -p~~-----~~-----t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                       ...     ++     ..-.++++.++.+|++++|.-+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence             111     11     12256888888899999887775

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.15  E-value=0.031  Score=53.57  Aligned_cols=103  Identities=27%  Similarity=0.465  Sum_probs=70.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---CC---------------------CCcccCCHHHHh-
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---SV---------------------SYPFYSNVCELA-  218 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---~~---------------------~~~~~~~l~e~l-  218 (300)
                      +.+|.|+||.|=|+|+.|+.+|+.|...|.+|+..+-+...   ..                     +.... +-++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence            44589999999999999999999999999999876654330   00                     11222 224444 


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ..||+++=|     ++++.|+.+-...++.. +++--+-|++- .+|--..+ +..|
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGI  329 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGI  329 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCC
Confidence            468877665     45677888888888766 77888888865 44433333 4444

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.13  E-value=0.0071  Score=61.46  Aligned_cols=88  Identities=19%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      ..++.|+|+|++|+.+++.|...|.++++.|.+++..     .+.       ...+.++++ +++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            4579999999999999999999999999998876532     121       111223333 678999999998776655


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .++  .....+.|...+|--+|.
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARARG  500 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeCC
Confidence            433  334445566555544443

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=96.12  E-value=0.055  Score=50.04  Aligned_cols=108  Identities=19%  Similarity=0.265  Sum_probs=72.1

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCE-EEEECCC--CCCCCCCcccCCHHHHhhc--CCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCS-ISYNSRT--KKPSVSYPFYSNVCELAAN--CDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~-V~~~~~~--~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+|.|.|. |.+|+.+.++|..+|++ |+..++.  .....+...+.++.|+-..  .|+.++++|.. .+...+ ++.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence            458889998 88999999999999986 3345555  3344567778899999887  89999999943 333333 233


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      .++=-+.++++.-+- +.-++++|.+..++..++-.|
T Consensus        86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG  121 (291)
T PRK05678         86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG  121 (291)
T ss_pred             HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence            332123344444333 344455889998888776443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.10  E-value=0.014  Score=62.34  Aligned_cols=64  Identities=19%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCC-CE-------------EEEECCCCCCCC-------CC---cc-cCCHH---HHhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFG-CS-------------ISYNSRTKKPSV-------SY---PF-YSNVC---ELAA  219 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g-~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~---e~l~  219 (300)
                      +.++|+|||.|.||+..|+.|.... .+             |.+.|++.+...       +.   .. +.+.+   ++++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            4779999999999999999998643 33             777887653211       11   11 23444   4457


Q ss_pred             cCCEEEEecCCC
Q 022233          220 NCDILIICCGLT  231 (300)
Q Consensus       220 ~aDvV~l~~p~~  231 (300)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999964

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.09  E-value=0.12  Score=48.06  Aligned_cols=90  Identities=12%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----------CC--CcccCCHHHHhhcCCEEEEec----
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----------VS--YPFYSNVCELAANCDILIICC----  228 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----------~~--~~~~~~l~e~l~~aDvV~l~~----  228 (300)
                      +.|.+|+++|- +++.++++..+..+|++|.+..+..-..           .+  .....+++++++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            67899999998 7899999999999999998876643211           11  223578999999999998752    


Q ss_pred             CCC---hh-----hhhcchHHHHhcCCCCcEEEEcC
Q 022233          229 GLT---AE-----THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       229 p~~---~~-----t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ...   .+     ..--++++.++.+|++++|.-+.
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence            111   11     12235778888889998887774

>PRK08328 hypothetical protein; Provisional

Probab=96.08  E-value=0.026  Score=50.37  Aligned_cols=37  Identities=38%  Similarity=0.494  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45899999999999999999999999998 67777643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.06  E-value=0.026  Score=53.35  Aligned_cols=37  Identities=32%  Similarity=0.450  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 88888764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.00  E-value=0.083  Score=48.71  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCC--CCCCCCCcccCCHHHHhhcCCEEEEecCCChhhh----------h
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT--KKPSVSYPFYSNVCELAANCDILIICCGLTAETH----------H  236 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~----------~  236 (300)
                      |++++|||-=.=-..+++.|...|++|..+.-.  ...-.++......++.++++|+|++-+|.+....          -
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            679999999888899999999999998766432  1212244444566667999999999999665421          1


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .+++++++.|+++++ +-++    ++..++-++.++.+|.
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence            246889999997654 4444    3445555577777774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12862 malic enzyme; Reviewed

Probab=95.99  E-value=0.16  Score=53.07  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233          108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR  187 (300)
Q Consensus       108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~  187 (300)
                      +|+|.|.. .  ..+|=.+++-+++.+|-.                          |..+...+|.|.|.|.-|..+|+.
T Consensus       161 ~ip~f~DD-~--~GTa~v~la~l~~a~~~~--------------------------~~~~~~~~iv~~GaGaag~~~a~~  211 (763)
T PRK12862        161 KIPVFHDD-Q--HGTAIIVAAALLNGLKLV--------------------------GKDIEDVKLVASGAGAAALACLDL  211 (763)
T ss_pred             CCceEecC-c--ccHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEEChhHHHHHHHHH
Confidence            57888873 2  345566677777666531                          556888999999999999999999


Q ss_pred             HHhCCC---EEEEECCCC-----CC--CCC-------CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          188 LDAFGC---SISYNSRTK-----KP--SVS-------YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       188 l~~~g~---~V~~~~~~~-----~~--~~~-------~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |...|.   +++.+|+..     .+  ...       .....+|.|+++.+|+++=.-     +.++++++.++.|.+..
T Consensus       212 l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p  286 (763)
T PRK12862        212 LVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP  286 (763)
T ss_pred             HHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence            999998   688888542     11  010       012358999999999877642     14789999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      ++.=.|.....-..+.......+.|.+.|
T Consensus       287 iifalsNP~~E~~p~~a~~~~~~~i~atG  315 (763)
T PRK12862        287 LIFALANPTPEILPEEARAVRPDAIIATG  315 (763)
T ss_pred             EEEeCCCCcccCCHHHHHHhcCCEEEEEC
Confidence            99999988863222222333334566666

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.99  E-value=0.0074  Score=50.89  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC---C-------CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          172 VGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV---S-------YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       172 vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~-------~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      |.|+|. |.+|+.+++.|...|++|....|++.+..   +       .....++.++++.+|+|+.+++.+..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            678995 99999999999999999999988766421   1       11223567789999999999985433

...

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.052  Score=52.88  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCc--ccCCHHHHhhcCCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYP--FYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~--~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++.++++.|+|.|.+|.++|+.|...|++|+++++.....          .+..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            3678999999999999999999999999999999864221          0111  112233556789999987543333


Q ss_pred             hhhc----------ch-HHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          234 THHM----------IN-KQVL-SALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       234 t~~l----------i~-~~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..-+          +. -+.+ ...+...+-|-=+.|..--.+-|...|+..
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            2211          11 1112 222323444445688877777777788653

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.95  E-value=0.037  Score=51.23  Aligned_cols=29  Identities=28%  Similarity=0.588  Sum_probs=26.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~  199 (300)
                      +|.|+|.|.+|..+|+.|...|. +++.+|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            58999999999999999999998 677665

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.95  E-value=0.15  Score=48.50  Aligned_cols=91  Identities=11%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEecC--------hhHHHHHHHHHhCCCEEEEECCCCCC-C-------------CC--CcccCCHHHHhhcC
Q 022233          166 KLGGKRVGIVGLG--------SIGSLVAKRLDAFGCSISYNSRTKKP-S-------------VS--YPFYSNVCELAANC  221 (300)
Q Consensus       166 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~g~~V~~~~~~~~~-~-------------~~--~~~~~~l~e~l~~a  221 (300)
                      .|.|++|+|+|.|        ++.++++..+..+|++|.+..+..-. .             .+  .....+++++++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        45578888899999999887764311 0             12  12357899999999


Q ss_pred             CEEEEec----C----------CChh-----------------hhhcchHHHHhcCC-CCcEEEEcC
Q 022233          222 DILIICC----G----------LTAE-----------------THHMINKQVLSALG-KEGVVINIG  256 (300)
Q Consensus       222 DvV~l~~----p----------~~~~-----------------t~~li~~~~l~~mk-~ga~lIn~s  256 (300)
                      |+|..-.    .          ..+.                 ..-.++++.++.++ ++++|.-+.
T Consensus       247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL  313 (357)
T TIGR03316       247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL  313 (357)
T ss_pred             CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence            9998863    1          0000                 11236788888888 788888773

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.92  E-value=0.15  Score=49.53  Aligned_cols=91  Identities=12%  Similarity=0.107  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEecC---hhHHHHHHHHHhC-CCEEEEECCCCCCC-C---------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          166 KLGGKRVGIVGLG---SIGSLVAKRLDAF-GCSISYNSRTKKPS-V---------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~G---~IG~~~A~~l~~~-g~~V~~~~~~~~~~-~---------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+.|++|+++|-+   ++..+++..+..+ |++|.+..+..-.. .         +  +....++++++++||+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            4789999999994   8999999988876 99998876643211 0         1  2235789999999999998542


Q ss_pred             CC-----hhh-----hhcchHHHHhc-CCCCcEEEEcC
Q 022233          230 LT-----AET-----HHMINKQVLSA-LGKEGVVINIG  256 (300)
Q Consensus       230 ~~-----~~t-----~~li~~~~l~~-mk~ga~lIn~s  256 (300)
                      -.     +..     .-.++++.++. .|++++|.-+.
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            10     100     12457888888 88898888664

>PRK07411 hypothetical protein; Validated

Probab=95.91  E-value=0.028  Score=54.15  Aligned_cols=82  Identities=21%  Similarity=0.173  Sum_probs=56.8

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c--
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P--  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~--  209 (300)
                      ..|...+|+|||+|.+|..+|+.|...|. +++.+|...-..             .+                 .  .  
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            35899999999999999999999999998 677776532110             00                 0  0  


Q ss_pred             ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                          ...+..+++.++|+|+.++ .+.+++.++++.....-+
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~  154 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNK  154 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCC
Confidence                0123456788999888775 456677777766555433

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.90  E-value=0.024  Score=55.16  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=67.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCccc--CCHHHHhhc-CCEEEEec--CC-C
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFY--SNVCELAAN-CDILIICC--GL-T  231 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~--~~l~e~l~~-aDvV~l~~--p~-~  231 (300)
                      +.|+++.|+|.|.+|.++|+.|+..|++|.++|+......         +....  ....+.+.. .|+|+..-  |. .
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            6789999999999999999999999999999987542211         21111  123344454 89888864  22 2


Q ss_pred             hhh-------hhcchHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          232 AET-------HHMINKQ-VLSAL-GKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       232 ~~t-------~~li~~~-~l~~m-k~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      +..       ..++.+. ++..+ +...+-|--+.|..--..-+...|+..
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            211       1123322 22233 334555666788877777777777653

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.89  E-value=0.036  Score=48.22  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|.+++|.|+|+|.+|..+++.|...|. +++.+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45899999999999999999999999998 68777653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.89  E-value=0.048  Score=52.91  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             cccCCCEEEEEec----------ChhHHHHHHHHHhCC-CEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecC
Q 022233          165 SKLGGKRVGIVGL----------GSIGSLVAKRLDAFG-CSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       165 ~~l~g~~vgIiG~----------G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++.|++|+|+|+          ..-...+++.|+..| .+|.+||+.-....    ......++++++++||+|+++.+
T Consensus       316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  395 (415)
T PRK11064        316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVD  395 (415)
T ss_pred             cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCC
Confidence            4578999999998          557789999999996 99999998743211    11134689999999999999987


Q ss_pred             CCh
Q 022233          230 LTA  232 (300)
Q Consensus       230 ~~~  232 (300)
                      -.+
T Consensus       396 ~~~  398 (415)
T PRK11064        396 HSQ  398 (415)
T ss_pred             CHH
Confidence            543

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.85  E-value=0.1  Score=49.07  Aligned_cols=90  Identities=12%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.|++|++||-+  ++.++++..+..+|++|.+..+..- +.             .+  .....++++++++||+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            679999999997  8899999999999999987765431 11             11  123478999999999998853


Q ss_pred             CC---C----hh-----hhhcchHHHHh-cCCCCcEEEEcC
Q 022233          229 GL---T----AE-----THHMINKQVLS-ALGKEGVVINIG  256 (300)
Q Consensus       229 p~---~----~~-----t~~li~~~~l~-~mk~ga~lIn~s  256 (300)
                      =.   .    ++     ..--++++.++ .+|++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            11   0    11     11235778888 478888887664

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.85  E-value=0.054  Score=51.23  Aligned_cols=104  Identities=17%  Similarity=0.181  Sum_probs=68.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCC-h-hhhhcc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLT-A-ETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~-~-~t~~li  238 (300)
                      .+|||||. .+|+..++.++..  ++++. +++++.+..      .+...+.+++|++++.|++++++|.+ + ..+.-+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            58999999 6899999988875  46765 577765432      14446789999999999999999753 2 222112


Q ss_pred             hHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          239 NKQVLSALGKEG-VVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       239 ~~~~l~~mk~ga-~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                         ..+.|+.|. +++.=== ..-+.++|+++.++.++...
T Consensus        83 ---a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 ---ARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             ---HHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEE
Confidence               233444553 3333211 14677888888888777633

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.84  E-value=0.074  Score=49.43  Aligned_cols=96  Identities=21%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCCC-C---------CCC--cccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKKP-S---------VSY--PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~~-~---------~~~--~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +.|.+|+++|-|   ++.++++..++.+|++|.+..+..-. .         .+.  ....++++++++||+|..-- ..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~  226 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ  226 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence            779999999995   99999999999999999887764321 1         022  23578999999999997732 11


Q ss_pred             -------hhh-----hhcchHHHHhcCCCCcEEEEcC-CCcccCH
Q 022233          232 -------AET-----HHMINKQVLSALGKEGVVINIG-RGPIIDE  263 (300)
Q Consensus       232 -------~~t-----~~li~~~~l~~mk~ga~lIn~s-rg~~vd~  263 (300)
                             ++.     .--++++.++.++++++|.-+. ||.=|+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~  271 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDP  271 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCH
Confidence                   110     1234678888889998888664 5554443

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.022  Score=56.47  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCccc--CCHHHHhhcCCEEEEe--cCCC--
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFY--SNVCELAANCDILIIC--CGLT--  231 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~--~~l~e~l~~aDvV~l~--~p~~--  231 (300)
                      +.+++|.|+|+|..|.++|+.|+..|++|.++|.......         +....  ....+.+.++|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            5688999999999999999999999999999996542210         11111  1134556789999986  4432  


Q ss_pred             ---hhh-------hhcchH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          232 ---AET-------HHMINK-QVL-SAL--------GKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       232 ---~~t-------~~li~~-~~l-~~m--------k~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                         +..       ..++.+ +++ ..+        ++..+-|-=+-|.---..-|...|++...
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~  148 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK  148 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence               211       122311 222 112        12344555567777777777777766443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.83  E-value=0.01  Score=59.75  Aligned_cols=83  Identities=14%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCEL-AANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~-l~~aDvV~l~~p~~~~t~~  236 (300)
                      .++-|+|+|++|+.+|+.|+..|.++++.|.+++..     .+.       .....++++ ++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            478999999999999999999999999998876532     111       111223332 5789999999988776654


Q ss_pred             cchHHHHhcCCCCcEEEE
Q 022233          237 MINKQVLSALGKEGVVIN  254 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn  254 (300)
                      ++.. ..+ +.+...+|-
T Consensus       498 iv~~-~~~-~~~~~~iia  513 (558)
T PRK10669        498 IVAS-ARE-KRPDIEIIA  513 (558)
T ss_pred             HHHH-HHH-HCCCCeEEE
Confidence            4432 223 344555553

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.82  E-value=0.017  Score=51.33  Aligned_cols=66  Identities=15%  Similarity=0.127  Sum_probs=48.5

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-C---cccCCHHHHhhcCCEEEEecCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-Y---PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-~---~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      --.++|++|.|||.|.++..=++.|..+|.+|+++.+...+..      + .   ....+. +.+..+++|+.++..
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD   95 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDD   95 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCC
Confidence            4568899999999999999999999999999999987654321      1 1   111122 346789988888753

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.82  E-value=0.011  Score=50.78  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             EEEEEecChhHHHHHHH--HHhCCCEE-EEECCCCCCC----CC--CcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233          171 RVGIVGLGSIGSLVAKR--LDAFGCSI-SYNSRTKKPS----VS--YPFYSNVCELAA--NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~--l~~~g~~V-~~~~~~~~~~----~~--~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++.|||.|++|++++..  .+..||++ ..||..++..    .+  ....+++++.++  +.|+.++|+|...+.+  +.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~--va  163 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQE--VA  163 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHH--HH
Confidence            79999999999999974  34678987 4788776532    11  223456777777  6889999999644322  22


Q ss_pred             HHHHhc-----CCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          240 KQVLSA-----LGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       240 ~~~l~~-----mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      ..+.+.     +.=..+-+++.-+=+|...+|...|+
T Consensus       164 d~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eLq  200 (211)
T COG2344         164 DRLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAELQ  200 (211)
T ss_pred             HHHHHcCCceEEeccceEecCCCCcEEEEeehHHHHH
Confidence            222221     11123456666666666666666554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.82  E-value=0.054  Score=52.78  Aligned_cols=103  Identities=21%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhC----------CCEEE-EECCCCCCCC-----CCcccCCHHHHhhc--CCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF----------GCSIS-YNSRTKKPSV-----SYPFYSNVCELAAN--CDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~----------g~~V~-~~~~~~~~~~-----~~~~~~~l~e~l~~--aDvV~l~~p~~  231 (300)
                      .+|||+|+|.||+.+++.+...          +.+|. +++++.....     ....+.++++++.+  .|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4899999999999999887542          34553 5566543321     12345688999864  69999988653


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK  276 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~  276 (300)
                      ....    .-..+.|+.|--+|-..-+... .-++|.++.++.++.
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            2212    1122445566555533222222 336777777776653

>PRK10206 putative oxidoreductase; Provisional

Probab=95.82  E-value=0.059  Score=50.91  Aligned_cols=63  Identities=16%  Similarity=0.282  Sum_probs=43.2

Q ss_pred             EEEEEecChhHHH-HHHHHHh--CCCEEE-EECCCCCCC-----CC-CcccCCHHHHhh--cCCEEEEecCCChh
Q 022233          171 RVGIVGLGSIGSL-VAKRLDA--FGCSIS-YNSRTKKPS-----VS-YPFYSNVCELAA--NCDILIICCGLTAE  233 (300)
Q Consensus       171 ~vgIiG~G~IG~~-~A~~l~~--~g~~V~-~~~~~~~~~-----~~-~~~~~~l~e~l~--~aDvV~l~~p~~~~  233 (300)
                      ++||||+|.|++. .+..+..  -+++|. ++|++++..     .+ ...+.+++++++  +.|+|++++|....
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998763 3454432  357775 678765322     11 335678999996  56999999997654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.82  E-value=0.013  Score=53.99  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC----------CC--cccCC---HHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV----------SY--PFYSN---VCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~----------~~--~~~~~---l~e~l~~aDvV~l~~p~  230 (300)
                      +.++++.|+|.|-.|++++-.|...|+ +|.+++|+.++..          +.  ....+   +.+.+..+|+|+.++|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            558899999999999999999999998 7889999764321          00  01112   23456789999999996


Q ss_pred             Chhh--hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          231 TAET--HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       231 ~~~t--~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .-..  ...++.   ..+.++.+++|+--.+ ..+.-|..|-+.|
T Consensus       205 Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  245 (283)
T PRK14027        205 GMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_pred             CCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence            5321  111332   3466788899987765 4444454444444

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.81  E-value=0.16  Score=46.50  Aligned_cols=111  Identities=16%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCCC-----CCC---------CCc--ccCCHHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTKK-----PSV---------SYP--FYSNVCE  216 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~~-----~~~---------~~~--~~~~l~e  216 (300)
                      |..|.+.+|.|+|.|.-|-.+|+.+...    |.       +++.+|+..-     ...         ...  ...+|.|
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e   99 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE   99 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence            4567889999999999999999999876    77       7887886521     100         001  2358999


Q ss_pred             Hhh--cCCEEEEecCCChhhhhcchHHHHhcCC---CCcEEEEcCCCcccCH---HHHHHHHHhCC-ceEEE
Q 022233          217 LAA--NCDILIICCGLTAETHHMINKQVLSALG---KEGVVINIGRGPIIDE---QELVRCLVQGE-IKGAG  279 (300)
Q Consensus       217 ~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lIn~srg~~vd~---~aL~~aL~~~~-i~~a~  279 (300)
                      +++  .+|+++=.-    ..-++|+++.++.|.   +..++.=.|....--|   ++.+++ .+|+ |.+.|
T Consensus       100 ~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATG  166 (279)
T cd05312         100 VVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASG  166 (279)
T ss_pred             HHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeC
Confidence            999  889887752    123689999999998   8899999998876333   333333 3454 66555

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.77  E-value=0.034  Score=52.85  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 67777653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.76  E-value=0.034  Score=53.04  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=60.6

Q ss_pred             cCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      |.||+|||+|+-          .-...++++|+..|.+|.+||+......     ......++++++++||+++++.- .
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence            889999999984          4567899999999999999998654321     24556899999999999999864 3


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEE
Q 022233          232 AETHHMINKQVLSALGKEGVVIN  254 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn  254 (300)
                      ++-+.+ +-+.+ .|| +.+++|
T Consensus       387 ~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         387 DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhcc-Chhhh-hcc-CCEEEe
Confidence            333333 32333 565 455565

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.76  E-value=0.095  Score=49.17  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------cccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SV-------SY--------PFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~e~l~~aDvV  224 (300)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..       ..        ....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            49999999 9999999999986665       68888874322  11       00        1123456789999999


Q ss_pred             EEecCCC--h-hhhh-cc--hH----HH---HhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 022233          225 IICCGLT--A-ETHH-MI--NK----QV---LSALG-KEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       225 ~l~~p~~--~-~t~~-li--~~----~~---l~~mk-~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      +++.-..  + +++. ++  |.    ++   +.... +.+++|.++  .++|.-.-+-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~  139 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM  139 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence            9986431  1 1221 11  11    11   22234 588999996  66776665543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.75  E-value=0.024  Score=55.14  Aligned_cols=87  Identities=24%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCCc-------ccCCHHH-HhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYP-------FYSNVCE-LAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~~-------~~~~l~e-~l~~aDvV~l~~p~~  231 (300)
                      +..+++.|+|+|.+|+.+++.|...|.+|++.+++++..       .+..       ....|++ -+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            446899999999999999999999999999998775421       1111       1112322 357899999888765


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEc
Q 022233          232 AETHHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~  255 (300)
                      ..+  ++.......+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            432  3333344445555555543

>PRK05086 malate dehydrogenase; Provisional

Probab=95.75  E-value=0.055  Score=50.49  Aligned_cols=94  Identities=17%  Similarity=0.301  Sum_probs=58.1

Q ss_pred             CEEEEEec-ChhHHHHHHHHHh---CCCEEEEECCCCCCC---C---CCc--c------cCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDA---FGCSISYNSRTKKPS---V---SYP--F------YSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~---~g~~V~~~~~~~~~~---~---~~~--~------~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||. |.||+++|..+..   .+..+..+++++...   .   ...  .      ..++.+.++++|+|++++-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 9999999988743   345788888764321   0   101  0      235567889999999987642


Q ss_pred             hh---hh-hcc------hHHHHhcC---CCCcEEEEcCCCcccCHHH
Q 022233          232 AE---TH-HMI------NKQVLSAL---GKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 ~~---t~-~li------~~~~l~~m---k~ga~lIn~srg~~vd~~a  265 (300)
                      ..   ++ .++      -++..+.|   .+.+++++++-.  +|.-.
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP--~D~~t  125 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP--VNTTV  125 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc--hHHHH
Confidence            11   11 111      12333333   567899998644  44433

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.069  Score=52.30  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEec--CCC-h----h
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICC--GLT-A----E  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~--p~~-~----~  233 (300)
                      ++.|++|.|+|+|.+|.++|+.|+..|++|.++|......     .+......-.+.+.++|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            3678999999999999999999999999999999653211     12221111123356899887632  211 1    1


Q ss_pred             hh---h----cchH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          234 TH---H----MINK-QVLSA-L-----GKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       234 t~---~----li~~-~~l~~-m-----k~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..   .    ++.+ +++.. +     +...+-|-=+.|..--..-|...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            11   1    1322 22222 2     334556666789888888888888764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.74  E-value=0.066  Score=45.60  Aligned_cols=74  Identities=27%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------------C----------------C-Cc--------ccC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------------V----------------S-YP--------FYS  212 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------------~----------------~-~~--------~~~  212 (300)
                      +|+|||+|.+|..+|+.|...|. ++..+|...-..            .                + ..        ...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            58999999999999999999998 588777543100            0                0 00        012


Q ss_pred             CHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          213 NVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      +++++++++|+|+.+ -.+.+++..+.......
T Consensus        81 ~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          81 NLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence            345778899988888 45677776665555443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02527 aspartate carbamoyltransferase

Probab=95.74  E-value=0.095  Score=48.83  Aligned_cols=92  Identities=25%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhC-CCEEEEECCCCC-CCC---------C--CcccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAF-GCSISYNSRTKK-PSV---------S--YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~-g~~V~~~~~~~~-~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +.|.+|+++|-+   ++.++++..+..+ |++|.+..+..- ...         +  .....++++++++||+|.... .
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~  227 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I  227 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence            678999999976   6889999998887 999987766432 110         1  123578999999999998843 2


Q ss_pred             Chh--------h-----hhcchHHHHhcCCCCcEEEEcC-CCc
Q 022233          231 TAE--------T-----HHMINKQVLSALGKEGVVINIG-RGP  259 (300)
Q Consensus       231 ~~~--------t-----~~li~~~~l~~mk~ga~lIn~s-rg~  259 (300)
                      ..+        -     .-.++++.++..+++++|.-+. ||.
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~  270 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD  270 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence            111        1     1345778888889999888664 554

>PRK12861 malic enzyme; Reviewed

Probab=95.73  E-value=0.17  Score=52.59  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233          108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR  187 (300)
Q Consensus       108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~  187 (300)
                      .|+|.|..   -..+|=.+++-+++.+|-.                          |..+...+|.|.|.|.-|..+|+.
T Consensus       157 ~ipvf~DD---~qGTa~v~lA~llnal~~~--------------------------gk~l~d~~iv~~GAGaAg~~ia~~  207 (764)
T PRK12861        157 KIPVFHDD---QHGTAITVSAAFINGLKVV--------------------------GKSIKEVKVVTSGAGAAALACLDL  207 (764)
T ss_pred             CCCeeccc---cchHHHHHHHHHHHHHHHh--------------------------CCChhHcEEEEECHhHHHHHHHHH
Confidence            67887773   2345566677777766531                          556888999999999999999999


Q ss_pred             HHhCCC---EEEEECCCC-----CCC--C-------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          188 LDAFGC---SISYNSRTK-----KPS--V-------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       188 l~~~g~---~V~~~~~~~-----~~~--~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      +...|.   +++.+|+..     ++.  .       ......+|.|+++.+|+++=. .    ..++++++.++.|.+.+
T Consensus       208 l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~P  282 (764)
T PRK12861        208 LVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARP  282 (764)
T ss_pred             HHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence            999998   688888532     110  1       001235899999999977654 2    25789999999999999


Q ss_pred             EEEEcCCCccc
Q 022233          251 VVINIGRGPII  261 (300)
Q Consensus       251 ~lIn~srg~~v  261 (300)
                      ++.=.|....-
T Consensus       283 IIFaLsNPtpE  293 (764)
T PRK12861        283 LILALANPTPE  293 (764)
T ss_pred             EEEECCCCCcc
Confidence            99999988763

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.69  E-value=0.096  Score=49.41  Aligned_cols=91  Identities=8%  Similarity=0.093  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|.+|++||-+  ++.++++..+..+|+++.+..+..- +.             .+  .....+++++++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4779999999986  6899999999999999988766431 11             01  22457899999999999885


Q ss_pred             cCCC-------hh------hhhcchHHHHhcC-CCCcEEEEcC
Q 022233          228 CGLT-------AE------THHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       228 ~p~~-------~~------t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      .=.+       ..      ..-.++++.++.. |++++|.-+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            2110       00      1123567777774 7888887764

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.68  E-value=0.036  Score=53.00  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC-------------CC----------------C-C--c--
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP-------------SV----------------S-Y--P--  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~-------------~~----------------~-~--~--  209 (300)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|...-.             ..                + .  .  
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            45899999999999999999999999997 78877654110             00                0 0  0  


Q ss_pred             ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                          ...+..++++++|+|+.|+ .+.+++.++++....
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence                0124557889999887765 456778777755444

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.68  E-value=0.026  Score=54.01  Aligned_cols=37  Identities=30%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 78888765

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.64  E-value=0.043  Score=52.84  Aligned_cols=80  Identities=24%  Similarity=0.245  Sum_probs=55.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------Cc----
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------YP----  209 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~~----  209 (300)
                      ..|.+.+|.|||+|.+|..+|+.|...|. ++..+|...-..             .+                 ..    
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            35899999999999999999999999998 677777432110             00                 00    


Q ss_pred             ----ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          210 ----FYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       210 ----~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                          ...+..++++++|+|+.++ .+..++.++++...+.
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~  156 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA  156 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence                0123456788899888765 4667777777665543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.61  E-value=0.016  Score=59.14  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHH-HhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCE-LAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e-~l~~aDvV~l~~p~~~~t~  235 (300)
                      ..++-|+|+|++|+.+|+.|.+.|.++++.|.+++..     .+..       ..+.+++ -+++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            4689999999999999999999999999988776532     1221       1112332 2568999999997666554


Q ss_pred             hcchHHHHhcCCCCcEEEE
Q 022233          236 HMINKQVLSALGKEGVVIN  254 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn  254 (300)
                      .++  ...+.+.|...++-
T Consensus       480 ~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             HHH--HHHHHhCCCCeEEE
Confidence            332  33344445544443

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.60  E-value=0.079  Score=50.04  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+.|.+|+++|= .++..+++..+..+|++|.+..+..- ..             .+  .....+++++++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            478999999998 68888889999999999988776431 10             01  223578999999999999833


Q ss_pred             -----CCC---hh------hhhcchHHHHhcCCCCcEEEEcC---CCcccC
Q 022233          229 -----GLT---AE------THHMINKQVLSALGKEGVVINIG---RGPIID  262 (300)
Q Consensus       229 -----p~~---~~------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd  262 (300)
                           ...   ++      -.-.++++.++.+|++++|.-+.   ||.=|+
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis  281 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVT  281 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceec
Confidence                 110   01      01346888899999999888775   554333

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.58  E-value=0.028  Score=55.62  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCccc--CCHHHHhhcCCEEEEecCCChhhh----
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFY--SNVCELAANCDILIICCGLTAETH----  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~----  235 (300)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|..+...     .+....  ....+.++++|+|+.+-...+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            568999999999999999999999999999999653211     122211  123456778998888643222111    


Q ss_pred             ------hcchHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          236 ------HMINKQVLS-AL--------GKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       236 ------~li~~~~l~-~m--------k~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                            .++++-.+. .+        +...+-|-=+-|..--..-+...|+..
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence                  122222221 11        112344555677777777777777763

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.52  E-value=0.17  Score=45.74  Aligned_cols=113  Identities=14%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC-----------EEEEECCCCC-----C-CC----C---C----cccCCHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-----------SISYNSRTKK-----P-SV----S---Y----PFYSNVC  215 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-----------~V~~~~~~~~-----~-~~----~---~----~~~~~l~  215 (300)
                      |..|.+.+|.|+|.|..|-.+|+.+...+.           +++.+|+..-     + ..    .   +    ....+|.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~   99 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE   99 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence            455788999999999999999999987665           5777776421     1 00    0   1    1235899


Q ss_pred             HHhh--cCCEEEEecCCChhhhhcchHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHhCCceEEEe
Q 022233          216 ELAA--NCDILIICCGLTAETHHMINKQVLSALG---KEGVVINIGRGPII---DEQELVRCLVQGEIKGAGL  280 (300)
Q Consensus       216 e~l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lIn~srg~~v---d~~aL~~aL~~~~i~~a~L  280 (300)
                      |+++  .+|+++=.-    ...++|.++.++.|.   +..++.=.|....-   ..++.+++=+.+.|.+.|.
T Consensus       100 eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGs  168 (254)
T cd00762         100 DAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGS  168 (254)
T ss_pred             HHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECC
Confidence            9999  999887642    224789999999998   88999999988873   3344444433335655554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.50  E-value=0.039  Score=51.18  Aligned_cols=90  Identities=22%  Similarity=0.375  Sum_probs=58.0

Q ss_pred             EEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC----------CC----cc--cCCHHHHhhcCCEEEEecCCCh-
Q 022233          172 VGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV----------SY----PF--YSNVCELAANCDILIICCGLTA-  232 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~----------~~----~~--~~~l~e~l~~aDvV~l~~p~~~-  232 (300)
                      |+|||.|.+|..+|-.+...|  .++..+|++.....          ..    ..  ..+ .+.+++||+|+++..... 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999999888  47999998764321          00    11  123 468999999999886422 


Q ss_pred             --hhh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHH
Q 022233          233 --ETH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQ  264 (300)
Q Consensus       233 --~t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~  264 (300)
                        .++        .++.  ...+....|.+++|+++  .++|.-
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s--NP~d~~  121 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS--NPVDIL  121 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc--ChHHHH
Confidence              111        1110  11223345789999997  444433

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.49  E-value=0.041  Score=55.70  Aligned_cols=65  Identities=20%  Similarity=0.375  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CC------cccCC---HHHHhhcCCEEEEecCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SY------PFYSN---VCELAANCDILIICCGL  230 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~------~~~~~---l~e~l~~aDvV~l~~p~  230 (300)
                      +...++|||||-|..|+.+++.++.+|++|..++.++.... ..      ..+.+   +.++.+++|+|+.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~   93 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH   93 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence            47899999999999999999999999999999988654211 00      01233   56677889999776443

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.49  E-value=0.16  Score=41.45  Aligned_cols=31  Identities=39%  Similarity=0.506  Sum_probs=28.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      +|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 78888765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07877 hypothetical protein; Provisional

Probab=95.45  E-value=0.068  Score=55.32  Aligned_cols=79  Identities=20%  Similarity=0.358  Sum_probs=56.5

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCC------C------CC-----------------C-----
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKP------S------VS-----------------Y-----  208 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~------~------~~-----------------~-----  208 (300)
                      ..|.+++|+|+|+| +|..+|..|...|.  +++..|...-.      .      .+                 .     
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            35999999999999 99999999998884  67766532100      0      00                 0     


Q ss_pred             ---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          209 ---PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       209 ---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                         ....++++++.++|+|+-|+- +-+++.++++...+.
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence               012367788999999988875 567888888666554

>PLN02342 ornithine carbamoyltransferase

Probab=95.43  E-value=0.33  Score=46.02  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC-CC---------CC---CcccCCHHHHhhcCCEEEEec----
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK-PS---------VS---YPFYSNVCELAANCDILIICC----  228 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~-~~---------~~---~~~~~~l~e~l~~aDvV~l~~----  228 (300)
                      +.|.+|+++|- .++-++++..+..+|++|.+..+..- +.         .+   +....++++++++||+|..-.    
T Consensus       192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~  271 (348)
T PLN02342        192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM  271 (348)
T ss_pred             cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence            77899999997 46788888888899999987765432 11         01   234578999999999999863    


Q ss_pred             CCChh--------hhhcchHHHHhcCCCCcEEEEcC
Q 022233          229 GLTAE--------THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       229 p~~~~--------t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      -..+.        ..-.++++.++.+|++++|.-+.
T Consensus       272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence            11111        11346888899999999888774

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.43  E-value=0.21  Score=44.03  Aligned_cols=112  Identities=21%  Similarity=0.228  Sum_probs=70.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc----c-cCCHHHH-----hhcCCEEEEecCCCh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP----F-YSNVCEL-----AANCDILIICCGLTA  232 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~----~-~~~l~e~-----l~~aDvV~l~~p~~~  232 (300)
                      .|.+|.|.|.|.+|+.+++.++..|.+|...+++....     .+..    . ..+..+.     -...|+++.+++...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  213 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE  213 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            47799999999999999999999999998887764321     0110    0 0112221     245899998876422


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                           .....+..|+++..+++++.....+........-.+.+.-.+.+.+.
T Consensus       214 -----~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         214 -----TLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             -----HHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC
Confidence                 23456778899999999887654433322222333444445555443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.42  E-value=0.078  Score=49.51  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      .+|+||| .|-.|+.+.+.|..... ++.....+....  .   .+.++.++++|++++++|.....+  +-.++   .+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--~---~~~~~~~~~~DvvFlalp~~~s~~--~~~~~---~~   72 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--A---AARRELLNAADVAILCLPDDAARE--AVALI---DN   72 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--c---cCchhhhcCCCEEEECCCHHHHHH--HHHHH---Hh
Confidence            4899999 79999999999997764 555543332221  1   234566788999999998553322  21222   25


Q ss_pred             CCcEEEEcC
Q 022233          248 KEGVVINIG  256 (300)
Q Consensus       248 ~ga~lIn~s  256 (300)
                      .|..+||.|
T Consensus        73 ~g~~VIDlS   81 (313)
T PRK11863         73 PATRVIDAS   81 (313)
T ss_pred             CCCEEEECC
Confidence            689999998

>PLN02602 lactate dehydrogenase

Probab=95.39  E-value=0.037  Score=52.54  Aligned_cols=95  Identities=15%  Similarity=0.310  Sum_probs=60.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------C-Cccc--CCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------S-YPFY--SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~-~~~~--~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|.+.+...             + ....  .+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999987775  6888998664321             0 1111  233 4489999999985432


Q ss_pred             --h-hhh-hcch--H-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 --A-ETH-HMIN--K-------QVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 --~-~t~-~li~--~-------~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                        + +++ .++.  .       ..+....+.+++|+++  .++|.-..+
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t~~  163 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLTYV  163 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHHHH
Confidence              1 223 2221  1       1233346788999997  445544433

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.36  E-value=0.062  Score=49.85  Aligned_cols=94  Identities=16%  Similarity=0.167  Sum_probs=60.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC-------CCCcc-cCCHHHHhh-----cCCEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS-------VSYPF-YSNVCELAA-----NCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~-------~~~~~-~~~l~e~l~-----~aDvV~l~~p~~~~  233 (300)
                      ..++||||.|+||+..+..+... ++++. +++++++..       .+... +.+.+++++     +.|+|+.++|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            45899999999999977766643 56765 566654321       13333 467888885     57889999875433


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcC---CCcc----cCHHHHH
Q 022233          234 THHMINKQVLSALGKEGVVINIG---RGPI----IDEQELV  267 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~s---rg~~----vd~~aL~  267 (300)
                      .+     -.....+.|..+||-+   +|++    |+.+++.
T Consensus        84 ~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~  119 (302)
T PRK08300         84 VR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHL  119 (302)
T ss_pred             HH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHHh
Confidence            22     1223356788888886   4444    5555553

>PLN00106 malate dehydrogenase

Probab=95.32  E-value=0.051  Score=51.00  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCC---C------CCc-----ccCCHHHHhhcCCEEEEecCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPS---V------SYP-----FYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~---~------~~~-----~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ..++|+|+|. |++|..+|..|...+.  ++..+|......   +      ...     ...++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3569999999 9999999999986554  788888765221   0      001     123457899999999997643


Q ss_pred             Ch---hhhh-cc--h----HHH---HhcCCCCcEEEEcCCCc
Q 022233          231 TA---ETHH-MI--N----KQV---LSALGKEGVVINIGRGP  259 (300)
Q Consensus       231 ~~---~t~~-li--~----~~~---l~~mk~ga~lIn~srg~  259 (300)
                      ..   .++. ++  |    ++.   +....+.+++|+++-.-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            21   1221 11  1    222   23335888999987544

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.32  E-value=0.029  Score=55.35  Aligned_cols=109  Identities=14%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccC--CHHHHhhcCCEEEEec--C-CChhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYS--NVCELAANCDILIICC--G-LTAET  234 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~--~l~e~l~~aDvV~l~~--p-~~~~t  234 (300)
                      .+.+++|.|+|+|.+|+++|+.|...|++|.++|+.....      .+.....  ...+.+.++|+|+..-  | ..+..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            4789999999999999999999999999999999754321      1222211  2234567889888762  2 22322


Q ss_pred             h-------hcchHHHHhc-------C--CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          235 H-------HMINKQVLSA-------L--GKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       235 ~-------~li~~~~l~~-------m--k~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      .       .++.+-.+..       +  +...+-|-=+-|..--..-|...|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1       1222222221       1  1124445556777777777777777643

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.31  E-value=0.039  Score=54.34  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcc--cCCHHHHhhcCCEEEEec--CC-Chh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPF--YSNVCELAANCDILIICC--GL-TAE  233 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~--~~~l~e~l~~aDvV~l~~--p~-~~~  233 (300)
                      +.|++|+|+|+|.-|.+.|+.|...|++|+++|.......        ....  .....+.+.++|+|+..-  |. .+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999985432111        1111  111235567899998863  22 222


Q ss_pred             hh-------hcchHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          234 TH-------HMINKQV--LSA-LG-----KEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       234 t~-------~li~~~~--l~~-mk-----~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .+       .++++-.  +.. ++     +..+-|-=+-|..--..-+...|+..
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            11       2344333  232 32     23455555678877777777777653

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.087  Score=46.46  Aligned_cols=36  Identities=36%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.++++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            67899999996 8999999999999999998877754

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.25  E-value=0.041  Score=51.96  Aligned_cols=56  Identities=23%  Similarity=0.464  Sum_probs=42.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CC---cccCC---HHHHhhcCCEEEE
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SY---PFYSN---VCELAANCDILII  226 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~---~~~~~---l~e~l~~aDvV~l  226 (300)
                      +|||||.|..|+.+++.++.+|++|++++.++....    ..   ..+.+   +.++++.||+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            599999999999999999999999999988654321    00   01223   6678889998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.25  E-value=0.037  Score=54.24  Aligned_cols=108  Identities=17%  Similarity=0.273  Sum_probs=69.1

Q ss_pred             cCCCEEEEEecChhHHH-HHHHHHhCCCEEEEECCCCCCC------CCCccc-CCHHHHhhcCCEEEEec--CC-Chhhh
Q 022233          167 LGGKRVGIVGLGSIGSL-VAKRLDAFGCSISYNSRTKKPS------VSYPFY-SNVCELAANCDILIICC--GL-TAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~-~A~~l~~~g~~V~~~~~~~~~~------~~~~~~-~~l~e~l~~aDvV~l~~--p~-~~~t~  235 (300)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|....+.      .+.... ..-.+.+.++|+|+..-  |. ++..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 7999999999999999754321      122111 11234566899988753  22 22222


Q ss_pred             -------hcchH-HHHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          236 -------HMINK-QVLSA-LG-KEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       236 -------~li~~-~~l~~-mk-~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                             .++++ +++.. ++ ...+-|-=+.|..--..-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23433 33333 33 235556667888777777778887654

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.23  E-value=0.038  Score=51.44  Aligned_cols=66  Identities=26%  Similarity=0.373  Sum_probs=48.1

Q ss_pred             CEEEEEecChhHH-HHHHHHHhCC--CEE-EEECCCCCCC------CCC-cccCCHHHHhhc--CCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGS-LVAKRLDAFG--CSI-SYNSRTKKPS------VSY-PFYSNVCELAAN--CDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~-~~A~~l~~~g--~~V-~~~~~~~~~~------~~~-~~~~~l~e~l~~--aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.|++ ..+..++..+  +.+ .++|+++...      .+. ..+.+++++++.  -|+|++++|.....+
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            4899999997764 5888888776  344 5678876542      133 357799999987  499999999765544

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.22  E-value=0.13  Score=50.23  Aligned_cols=95  Identities=16%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             ccccCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHH-HhhcCCEEEEecCC
Q 022233          164 GSKLGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCE-LAANCDILIICCGL  230 (300)
Q Consensus       164 g~~l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e-~l~~aDvV~l~~p~  230 (300)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+.-....  .......+++ .++.||+|++++.-
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            34578999999999          56788999999999999999998732211  1000111222 46789999999864


Q ss_pred             ChhhhhcchHH-HHhcCCCCcEEEEcCCCccc
Q 022233          231 TAETHHMINKQ-VLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       231 ~~~t~~li~~~-~l~~mk~ga~lIn~srg~~v  261 (300)
                      .+ -+. ++-+ ..+.|+...++||+ |+-+.
T Consensus       389 ~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~~~  417 (425)
T PRK15182        389 QQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYVLP  417 (425)
T ss_pred             HH-hhc-CCHHHHHHhcCCCCEEEEC-CCCCC
Confidence            43 232 3333 33456655689994 66653

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.21  E-value=0.12  Score=48.55  Aligned_cols=105  Identities=13%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             CEEEEEecChhHHHHHHHHHh--------CCCEEE-EECCCCCC--CCC--------------Cc-c-cC--CHHHHh-h
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA--------FGCSIS-YNSRTKKP--SVS--------------YP-F-YS--NVCELA-A  219 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~--------~g~~V~-~~~~~~~~--~~~--------------~~-~-~~--~l~e~l-~  219 (300)
                      ++|+|+|+|++|+.+++.|..        ++.+|. +.|++...  ..+              .. . ..  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            389999999999999999876        456654 34543210  010              00 0 11  455553 4


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCc
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEI  275 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i  275 (300)
                      ++|+|+=+.|....-... -.-+.+.|+.|.-+|-.+-|.+. .-+.|.++.++++.
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~  136 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR  136 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence            679999998753211111 12335567788888888877775 45666676666544

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.15  E-value=0.038  Score=51.25  Aligned_cols=60  Identities=10%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------cccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |+|.|.| .|.||+.+++.|...|++|.+..|+..+.     .+.       ....++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4799999 59999999999999999999888764321     111       122356778999999887654

>PRK05442 malate dehydrogenase; Provisional

Probab=95.14  E-value=0.22  Score=46.80  Aligned_cols=98  Identities=12%  Similarity=0.139  Sum_probs=60.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CCC-------C--------cccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SVS-------Y--------PFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~l~~aDvV  224 (300)
                      ++|+|||. |.+|..+|-.|...|.       ++..+|.....  ..+       .        ....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            39999998 9999999998876443       68888875421  110       0        1123455889999999


Q ss_pred             EEecCCC--h-hhhh-cc--h----HHHH---hc-CCCCcEEEEcCCCcccCHHHHHHH
Q 022233          225 IICCGLT--A-ETHH-MI--N----KQVL---SA-LGKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       225 ~l~~p~~--~-~t~~-li--~----~~~l---~~-mk~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      +++.-..  + +++. ++  |    +++.   .. -++.+++|.++  .++|.-..+..
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~~  141 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIAM  141 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHHH
Confidence            9976421  1 1221 11  1    1222   22 33688999997  66776665543

>cd00704 MDH Malate dehydrogenase

Probab=95.06  E-value=0.3  Score=45.89  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCC--CCCCC-------C--------cccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTK--KPSVS-------Y--------PFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~e~l~~aDvV~  225 (300)
                      +|+|+|. |.||+.+|..|...|.       ++..+|++.  +...+       .        ....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999999886553       488888875  32110       0        11145678999999999


Q ss_pred             EecCCC--h-hhhh-cc--h----HH---HHhcC-CCCcEEEEcCCCcccCHHHHHHH
Q 022233          226 ICCGLT--A-ETHH-MI--N----KQ---VLSAL-GKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       226 l~~p~~--~-~t~~-li--~----~~---~l~~m-k~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      ++.-..  + +++. ++  |    ++   .+... +|.+++|.++  .++|.-+.+..
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~  137 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIAL  137 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHH
Confidence            875431  1 1221 11  1    12   23334 5788888885  67776665543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.05  E-value=0.042  Score=51.17  Aligned_cols=60  Identities=22%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC------cccCCHHHHhhcCCEEEEecCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------SY------PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~~------~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +|+|||.|.+|..+|-.|...|.  ++..+|.+.+...          .+      ....+-.+.+++||+|+++.-.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~   78 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence            58999999999999999887665  6888888654321          00      1111235789999999997653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.05  E-value=0.17  Score=47.08  Aligned_cols=106  Identities=22%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCC--CCCC-------------CC--cc--cCCHHHHhhcCCEEEEe
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTK--KPSV-------------SY--PF--YSNVCELAANCDILIIC  227 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~--~~~~-------------~~--~~--~~~l~e~l~~aDvV~l~  227 (300)
                      ++|+|+|. |.+|..+|..|...|.  +|..+|+..  +...             +.  ..  ..+ .+.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            58999998 9999999999998876  588888843  2110             00  01  123 3459999999999


Q ss_pred             cCCCh---hhh-hc------chHH---HHhcCCCCcEEEEcCCCcccCHHHHHHH----HHhCCceEE
Q 022233          228 CGLTA---ETH-HM------INKQ---VLSALGKEGVVINIGRGPIIDEQELVRC----LVQGEIKGA  278 (300)
Q Consensus       228 ~p~~~---~t~-~l------i~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~a----L~~~~i~~a  278 (300)
                      .....   .++ .+      +-.+   .+....+.+++|.++  .++|.-..+-.    +...++.|.
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence            85321   121 11      0111   123334677777776  56665553332    334455555

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.03  E-value=0.071  Score=46.64  Aligned_cols=37  Identities=35%  Similarity=0.494  Sum_probs=33.0

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            67899999997 67999999999999999999888654

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.02  E-value=0.12  Score=48.13  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCCC-EEEEECCCCC-CCC----CCcccCCHHHHhhcCCEEEEecCCC-----h
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFGC-SISYNSRTKK-PSV----SYPFYSNVCELAANCDILIICCGLT-----A  232 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~-~V~~~~~~~~-~~~----~~~~~~~l~e~l~~aDvV~l~~p~~-----~  232 (300)
                      +.|.+|+++|=   +++..+++..+..+|+ +|.+..+..- +..    ......+++++++++|+|...-=-.     +
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~  234 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNS  234 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccch
Confidence            67899999998   5999999999999999 8987766432 111    1234578999999999998722111     1


Q ss_pred             h----h--hhcchHHHHhcCCCCcEEEEcC
Q 022233          233 E----T--HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       233 ~----t--~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .    .  .-.++.+.++.+|++++|.-+.
T Consensus       235 ~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL  264 (310)
T PRK13814        235 VDIDAFRGSFRLTPEKLYSAKPDAIVMHPG  264 (310)
T ss_pred             hHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence            1    1  1245777888888988888775

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.92  E-value=0.079  Score=49.70  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=45.3

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCC--CEEEEECCCCCCCC--C-------Cccc-----CCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFG--CSISYNSRTKKPSV--S-------YPFY-----SNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~--~-------~~~~-----~~l~e~l~~aDvV~l~~p  229 (300)
                      ++.++|+|||. |.||+.+|..|...+  .++..+|+......  .       ....     .+..+.+++||+|++++-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56779999999 999999999998544  47888887322210  1       1111     122678999999998765


Q ss_pred             C
Q 022233          230 L  230 (300)
Q Consensus       230 ~  230 (300)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            4

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.92  E-value=0.02  Score=45.13  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=59.5

Q ss_pred             ecChhHHHHHHHHHhC----CCEEE-EECCC--CCCC-----CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHH
Q 022233          176 GLGSIGSLVAKRLDAF----GCSIS-YNSRT--KKPS-----VSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~----g~~V~-~~~~~--~~~~-----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      |+|.||+.+++.+...    +++|. +++++  ....     .......++++++.  ..|+|+=|.+..+. .    +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence            8999999999999865    67765 55665  1111     12344678999988  89999999543322 2    33


Q ss_pred             HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCc
Q 022233          242 VLSALGKEGVVINIGRGPII---DEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~v---d~~aL~~aL~~~~i  275 (300)
                      ..+.|+.|.-+|-.+-+.+.   .-+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            45667789999999988888   34445555555443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.92  E-value=0.13  Score=46.52  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=44.9

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CcccCCHHHHh------hc-CCEEEEecCCC
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--S-------YPFYSNVCELA------AN-CDILIICCGLT  231 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~-------~~~~~~l~e~l------~~-aDvV~l~~p~~  231 (300)
                      +|.|.|. |.+|+.+++.|...|++|.+..|++....  +       ....+++.+++      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4678887 99999999999999999999888764321  1       11234566666      45 89999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.91  E-value=0.047  Score=50.40  Aligned_cols=95  Identities=15%  Similarity=0.246  Sum_probs=69.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCccc----------CCH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----V--------------SYPFY----------SNV  214 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~--------------~~~~~----------~~l  214 (300)
                      +....+.++-++|+|.+|-..+......|+-|..++-.+...     .              ++...          .-+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            445778899999999999999999999999888877543210     0              11111          123


Q ss_pred             HHHhhcCCEEEEe--cCCChhhhhcchHHHHhcCCCCcEEEEcC--CCc
Q 022233          215 CELAANCDILIIC--CGLTAETHHMINKQVLSALGKEGVVINIG--RGP  259 (300)
Q Consensus       215 ~e~l~~aDvV~l~--~p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg~  259 (300)
                      .+.+++.|+||..  +|..+. ..++.++..+.||||+++||.+  +|+
T Consensus       239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlAa~~GG  286 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLAAETGG  286 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEehhhcCC
Confidence            4567899999875  455444 4578999999999999999985  553

>PRK04148 hypothetical protein; Provisional

Probab=94.88  E-value=0.06  Score=43.97  Aligned_cols=69  Identities=16%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-----cccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-----PFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-----~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      +++++..||+| -|..+|..|+..|++|++.|.++....     ..     ..+..--++-+.+|+|-..=|..+-...+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~   94 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI   94 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence            46799999999 899999999999999999998876321     11     11223346678888887776644433333

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.87  E-value=0.12  Score=48.28  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=58.2

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC-----C----Cccc-----CCHHHHhhcCCEEEEecCCCh-
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV-----S----YPFY-----SNVCELAANCDILIICCGLTA-  232 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-----~----~~~~-----~~l~e~l~~aDvV~l~~p~~~-  232 (300)
                      +|+|||. |.+|.++|-.|...+.  ++..+|.++....     .    ....     .++.+.+++||+|+++.-... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999999986664  7888888662210     0    1111     134688999999999875421 


Q ss_pred             --hhh-hcc--hH----H---HHhcCCCCcEEEEcCCCcccCH
Q 022233          233 --ETH-HMI--NK----Q---VLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       233 --~t~-~li--~~----~---~l~~mk~ga~lIn~srg~~vd~  263 (300)
                        .++ .++  |.    +   .+..-.|.+++|+++  .++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence              122 111  11    1   223336899999996  45554

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=94.86  E-value=0.33  Score=45.77  Aligned_cols=90  Identities=12%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCC-CC-------------CC--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKK-PS-------------VS--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~-~~-------------~~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.|++|++||-+  ++.++.+..+..+|++|.+..+..- +.             .+  .....++++++++||+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            678999999975  8899999999999999988766421 10             11  234578999999999998842


Q ss_pred             CC--------Chh-----hhhcchHHHHhcCC-CCcEEEEcC
Q 022233          229 GL--------TAE-----THHMINKQVLSALG-KEGVVINIG  256 (300)
Q Consensus       229 p~--------~~~-----t~~li~~~~l~~mk-~ga~lIn~s  256 (300)
                      =.        .++     -.-.++++.++.++ ++++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            10        001     11245778888886 588887764

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.86  E-value=0.22  Score=46.47  Aligned_cols=62  Identities=11%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-C-----------CC-CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-S-----------VS-YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-~-----------~~-~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|++|++||- +++.++++..+..+|++|.+..+..-. .           .+ .....+++++++++|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999998 799999999999999999887764321 0           01 22357899999999999884

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.85  E-value=0.029  Score=45.50  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=28.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999999998 78887753

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.84  E-value=0.13  Score=47.38  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             CEEEEEecChhHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCc-ccCCHHHHhh--cCCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA-FGCSIS-YNSRTKKPS-------VSYP-FYSNVCELAA--NCDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~-------~~~~-~~~~l~e~l~--~aDvV~l~~p~~~~t~~l  237 (300)
                      .+|||||.|+||+..+..+.. -++++. +++++++..       .+.. .+.+.+++++  +-|+|++++|.....+  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            479999999999988776664 356765 566655321       1332 3457888885  5788999998654433  


Q ss_pred             chHHHHhcCCCCcEEEEcC
Q 022233          238 INKQVLSALGKEGVVINIG  256 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~s  256 (300)
                         -....++.|..+|+-.
T Consensus        80 ---~a~~al~aGk~VIdek   95 (285)
T TIGR03215        80 ---HARLLAELGKIVIDLT   95 (285)
T ss_pred             ---HHHHHHHcCCEEEECC
Confidence               2233355677776664

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.83  E-value=0.053  Score=53.27  Aligned_cols=105  Identities=14%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC------Cccc-CCHHHHhhcCCEEEEecCC---Chhhh--
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS------YPFY-SNVCELAANCDILIICCGL---TAETH--  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~------~~~~-~~l~e~l~~aDvV~l~~p~---~~~t~--  235 (300)
                      .|++|+|+|+|.-|.++|+.|+. |.+|+++|........      .... ....+.+.++|+|+..--.   ++...  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            47899999999999999999995 9999999854322110      0000 1123456789998886322   22211  


Q ss_pred             -----hcchHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          236 -----HMINKQ-VL-SALGK-EGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       236 -----~li~~~-~l-~~mk~-ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                           .++++- ++ ..+++ ..+=|-=+.|..--..-+...|+..
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence                 133322 32 33332 2444555678877777777777763

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.81  E-value=0.09  Score=43.61  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=52.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ..|++|++||+=   ++++++++..+.++.++++++......   ......++++.+||+|+++-.  .-..+-+ ..++
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL   82 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence            468999999961   237888887889999999987542211   123456789999999998632  1111111 4566


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +..+++..++=++
T Consensus        83 ~~~~~~~~vil~G   95 (147)
T PF04016_consen   83 ELARNAREVILYG   95 (147)
T ss_dssp             HHTTTSSEEEEES
T ss_pred             HhCccCCeEEEEe
Confidence            6667666665554

; PDB: 3L5O_B 3NPG_A.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.80  E-value=0.075  Score=51.82  Aligned_cols=108  Identities=18%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc-CC-HHHHhhcCCEEEEecCCC---h
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY-SN-VCELAANCDILIICCGLT---A  232 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~-~~-l~e~l~~aDvV~l~~p~~---~  232 (300)
                      +.++++.|+|.|.+|.++|+.|+..|++|.++|......         .+.... .. .++.+.++|+|+..--..   +
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            568999999999999999999999999999998654321         121111 11 233457899998864333   2


Q ss_pred             hhhh-------cch-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          233 ETHH-------MIN-KQVLSA-LG---KEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       233 ~t~~-------li~-~~~l~~-mk---~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ..+.       ++. .+++.. ++   ...+-|-=+-|..--..-+...|+...
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            2221       222 223333 32   234555556788777777777777543

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=94.78  E-value=0.33  Score=44.81  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCC--CCCCCCCcccCCHHHHhhc--CCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRT--KKPSVSYPFYSNVCELAAN--CDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~--~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+|.|.|. |.+|+.+-+.+...|.++. ..++.  .....+...+.+++|+-+.  .|+.++++|.. .+...+. +.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-EA   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-HH
Confidence            557888884 8999999999999898743 35555  3334466778899998887  79999999943 3343432 23


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      .+.=-+.++++.-+-++ -++++|.+..++..++-.
T Consensus        84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril  118 (286)
T TIGR01019        84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI  118 (286)
T ss_pred             HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence            22211234444444333 367789988888776543

ATP citrate lyases appear to form an outgroup.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.75  E-value=0.11  Score=48.60  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=59.1

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHhh---cCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELAA---NCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~---~aDvV~l~~p~~~~  233 (300)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++++..     .++..     ..++.+...   ..|+|+-++.....
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~  248 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS  248 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence            48899999999999999999999998 588877765431     12211     123444332   27999888653221


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                           -...++.++++..++.++.
T Consensus       249 -----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        249 -----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             -----HHHHHHHhhcCCEEEEEcc
Confidence                 1356778899999999875

>PRK15076 alpha-galactosidase; Provisional

Probab=94.74  E-value=0.034  Score=54.25  Aligned_cols=109  Identities=9%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             CEEEEEecChhHHHHHH--HH---HhC-CCEEEEECCCCCCCC-------------C----CcccCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGLGSIGSLVAK--RL---DAF-GCSISYNSRTKKPSV-------------S----YPFYSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~--~l---~~~-g~~V~~~~~~~~~~~-------------~----~~~~~~l~e~l~~aDvV~l  226 (300)
                      ++|+|||.|.+|...+-  .+   .++ |.+|..+|..++...             +    .....++.+++++||+|++
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            48999999999965544  22   223 458999998754311             1    1123577899999999999


Q ss_pred             ecCCChhh-h------------------hc--------------chHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          227 CCGLTAET-H------------------HM--------------INKQ---VLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       227 ~~p~~~~t-~------------------~l--------------i~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      ++-..... .                  ..              +-.+   .+....|++++||.+-..=+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            88653111 1                  00              0011   23334689999999877755566665 33


Q ss_pred             HhCCceEEE
Q 022233          271 VQGEIKGAG  279 (300)
Q Consensus       271 ~~~~i~~a~  279 (300)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            444565554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.67  E-value=0.05  Score=49.84  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCCCc--ccCCHH-HH-hhcCCEEEEecCCChh--h---hhcc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSYP--FYSNVC-EL-AANCDILIICCGLTAE--T---HHMI  238 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~~--~~~~l~-e~-l~~aDvV~l~~p~~~~--t---~~li  238 (300)
                      ++++.|+|.|-.+++++-.|+..|+ +|.+++|+.++.....  ...+.. ++ ...+|+||.++|..-.  .   ...+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi  201 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF  201 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence            4689999999999999999999998 5999999865432100  001111 11 2558999999996422  1   1123


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      +.   ..++++.+++|+.-.+ ..+.-|..|-+.|
T Consensus       202 ~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  232 (272)
T PRK12550        202 PE---AEIDAASVVFDVVALP-AETPLIRYARARG  232 (272)
T ss_pred             CH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence            33   3467788999998766 3444444443433

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.66  E-value=0.093  Score=48.45  Aligned_cols=84  Identities=20%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCCCC---CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVS---YPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~~~---~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .|+++.|+|.|.||...++.++.+|.+ |.+.++.......   ......-++.-...|+|+-++.....    + ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~----~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSL----I-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHH----H-HHHH
Confidence            367899999999999999999999997 5556654332111   11111111122357988888753221    1 3456


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +.++++..++.++
T Consensus       219 ~~l~~~G~iv~~G  231 (308)
T TIGR01202       219 RRLAKGGEIVLAG  231 (308)
T ss_pred             HhhhcCcEEEEEe
Confidence            7788888888776

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.58  E-value=0.33  Score=43.97  Aligned_cols=93  Identities=20%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCC----CCC--C-----------CCcccCCHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTK----KPS--V-----------SYPFYSNVC  215 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~----~~~--~-----------~~~~~~~l~  215 (300)
                      |..|.+.+|.|+|.|.-|-.+|+.+...    |.       +++.+|+..    ...  .           ......+|.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~   99 (255)
T PF03949_consen   20 GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLL   99 (255)
T ss_dssp             TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHH
T ss_pred             CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHH
Confidence            4568899999999999999999999877    87       477777642    110  0           111124899


Q ss_pred             HHhhcC--CEEEEecCCChhhhhcchHHHHhcCCC---CcEEEEcCCCcc
Q 022233          216 ELAANC--DILIICCGLTAETHHMINKQVLSALGK---EGVVINIGRGPI  260 (300)
Q Consensus       216 e~l~~a--DvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~srg~~  260 (300)
                      |+++.+  |+++=.-    ...++|+++.++.|.+   ..++.=.|....
T Consensus       100 eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999999  9888763    1467899999999987   899999998887

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK14851 hypothetical protein; Provisional

Probab=94.57  E-value=0.12  Score=53.26  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR  200 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~  200 (300)
                      ..|++++|+|+|+|.+|..+|..|...|. ++...|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            45899999999999999999999999997 6666653

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.52  E-value=0.27  Score=45.40  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~  202 (300)
                      ..|.+.+|.|+|+|.+|..+|+.|...|. +|+.+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            35889999999999999999999999998 688887543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.47  E-value=0.28  Score=47.97  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             EEEEEec-ChhHHHHHHHHHhC-------CC--EEEEECCCCCCCCC---------------CcccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAF-------GC--SISYNSRTKKPSVS---------------YPFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~-------g~--~V~~~~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~  225 (300)
                      +|+|||. |.+|..+|-.|...       |.  ++..+|++.+...+               .....+-.+.+++||+|+
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV  181 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL  181 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence            9999999 99999999998865       44  67888887654321               011134457899999999


Q ss_pred             EecCCC--h-hhh-hcc--h----HH---HHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          226 ICCGLT--A-ETH-HMI--N----KQ---VLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       226 l~~p~~--~-~t~-~li--~----~~---~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ++.-..  + .++ .++  |    ++   .+.. -.+.+++|.++  .++|.-..+-.-..
T Consensus       182 itAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        182 LIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            976431  1 111 111  1    11   2333 46789999997  77887776654444

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.46  E-value=0.079  Score=38.74  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS  205 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~  205 (300)
                      ++.|||.|.+|-.+|..|+.+|.+|+++.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999988876543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.41  E-value=0.13  Score=46.69  Aligned_cols=85  Identities=24%  Similarity=0.324  Sum_probs=56.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCccc---CCHHH----Hh--hcCCEEEEecCCCh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS-----VSYPFY---SNVCE----LA--ANCDILIICCGLTA  232 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~-----~~~~~~---~~l~e----~l--~~aDvV~l~~p~~~  232 (300)
                      .|.+|.|+|.|.||..+++.++.+|.+ |++.+++++..     .++...   .+..+    +.  ...|+++-++....
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            478999999999999999999999996 87777654321     122111   11112    11  24799888765322


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      .     -...+..++++..++.++-
T Consensus       200 ~-----~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       200 A-----VRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             H-----HHHHHHHhcCCCEEEEecc
Confidence            2     2345677889999988873

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.40  E-value=0.097  Score=49.16  Aligned_cols=85  Identities=28%  Similarity=0.421  Sum_probs=58.1

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC---CC-----CCCCccc----CCHHH--HhhcCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK---KP-----SVSYPFY----SNVCE--LAANCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~---~~-----~~~~~~~----~~l~e--~l~~aDvV~l~~p~~~~  233 (300)
                      .|.+|.|+|.|.||...++.++..|.+|++.+++.   +.     ..++...    .++.+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            47899999999999999999999999999888732   11     1122111    11111  2245799999875322 


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                          .-.+.++.|+++..++.++.
T Consensus       251 ----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             ----HHHHHHHHccCCcEEEEEec
Confidence                12456788999999888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.40  E-value=0.035  Score=48.86  Aligned_cols=73  Identities=14%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------cccCCHHHHhhcCCEEEEecCCC-----
Q 022233          172 VGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSY-------PFYSNVCELAANCDILIICCGLT-----  231 (300)
Q Consensus       172 vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~-------~~~~~l~e~l~~aDvV~l~~p~~-----  231 (300)
                      |.|+|. |.+|+.+++.|...+++|.+..|+....       .+.       ...+++.++++.+|.|++++|..     
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~   80 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL   80 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence            678895 9999999999999999998887765321       122       12346778899999999999943     


Q ss_pred             hhhhhcchHHHHh
Q 022233          232 AETHHMINKQVLS  244 (300)
Q Consensus       232 ~~t~~li~~~~l~  244 (300)
                      +....++++..-+
T Consensus        81 ~~~~~li~Aa~~a   93 (233)
T PF05368_consen   81 EQQKNLIDAAKAA   93 (233)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhhcc
Confidence            1234455544433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.39  E-value=0.23  Score=42.79  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC---CC-----c--ccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV---SY-----P--FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~~-----~--~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      |+|+|||. |.+|+.+++-+...|++|+..-|++.+..   +.     .  ...++.+.+..-|+|+.+.-..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            58999995 99999999999999999998888765432   11     1  1234557899999999987644

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.33  E-value=0.11  Score=50.75  Aligned_cols=105  Identities=18%  Similarity=0.210  Sum_probs=65.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----C-----CCccc--CCHHHHhhcCCEEEEec--CC-Chhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----V-----SYPFY--SNVCELAANCDILIICC--GL-TAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~-----~~~~~--~~l~e~l~~aDvV~l~~--p~-~~~t  234 (300)
                      +-+++|+|+|.+|.++|+.|+..|++|.++|......    .     +....  ..-.+.+.++|+|+..-  |. +|..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            4589999999999999999999999999999754321    0     21111  11234567899887753  22 2221


Q ss_pred             h-------hcchH-HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          235 H-------HMINK-QVLS-ALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       235 ~-------~li~~-~~l~-~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .       .++.+ +++. .++...+-|-=+.|..--..-+...|+..
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            1       13322 2332 23434555666688877777777777754

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.31  E-value=0.14  Score=48.00  Aligned_cols=95  Identities=16%  Similarity=0.198  Sum_probs=60.0

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CCC---------------CcccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SVS---------------YPFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~~---------------~~~~~~l~e~l~~aDvV~  225 (300)
                      +|+|||. |.+|+.+|-.|...|.       ++..+|.....  ..+               .....+..+.+++||+|+
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV   84 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL   84 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence            8999998 9999999999987664       68888885421  110               011134568899999999


Q ss_pred             EecCCC--h-hhhh-cc--hHH-------HHhcCCC-CcEEEEcCCCcccCHHHHH
Q 022233          226 ICCGLT--A-ETHH-MI--NKQ-------VLSALGK-EGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       226 l~~p~~--~-~t~~-li--~~~-------~l~~mk~-ga~lIn~srg~~vd~~aL~  267 (300)
                      ++.-..  + +++. ++  |.+       .+....+ .+++|.++  .++|.-.-+
T Consensus        85 itAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v  138 (323)
T TIGR01759        85 LVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNALI  138 (323)
T ss_pred             EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHH
Confidence            986432  1 2221 11  111       1222334 88999886  666655543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=94.25  E-value=0.14  Score=50.93  Aligned_cols=83  Identities=24%  Similarity=0.340  Sum_probs=63.2

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +..+.|++..++|-..| |.+++..|+.....|+.+-..         ..++.|.+.++|+|+.++--.+    ++-   
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~Pe----fVK---  220 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQPE----FVK---  220 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCcc----eee---
Confidence            33588999999998865 999999999988899765321         2478899999999999985332    232   


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 022233          243 LSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd  262 (300)
                      -.++|||+++||++---+-|
T Consensus       221 gdWiKpGavVIDvGINyvpD  240 (935)
T KOG4230|consen  221 GDWIKPGAVVIDVGINYVPD  240 (935)
T ss_pred             cccccCCcEEEEccccccCC
Confidence            24689999999998655444

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.23  E-value=0.16  Score=46.76  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC---------C----C-------CcccCCHHHHhhcCCEEEEe
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS---------V----S-------YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~----~-------~~~~~~l~e~l~~aDvV~l~  227 (300)
                      |++|.|.| .|-||+.+++.|...|++|.+..|+....         .    .       ......++++++.+|+|+.+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   83 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT   83 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence            68999999 69999999999999999998776653210         0    0       01123466788899988776


Q ss_pred             cC
Q 022233          228 CG  229 (300)
Q Consensus       228 ~p  229 (300)
                      ..
T Consensus        84 A~   85 (322)
T PLN02662         84 AS   85 (322)
T ss_pred             CC
Confidence            54

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.23  E-value=0.27  Score=45.86  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=51.4

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCC-CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFG-CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      +|+|+|. |-.|..+.++|.... +++........    .. ..+.+++++++|++++++|.... ..+. ..+   .+.
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~~s-~~~~-~~~---~~~   72 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDDAA-REAV-SLV---DNP   72 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHHHH-HHHH-HHH---HhC
Confidence            7899985 889999999999865 46654432221    11 12456777899999999995533 2222 222   256


Q ss_pred             CcEEEEcC
Q 022233          249 EGVVINIG  256 (300)
Q Consensus       249 ga~lIn~s  256 (300)
                      |..+||.|
T Consensus        73 g~~VIDlS   80 (310)
T TIGR01851        73 NTCIIDAS   80 (310)
T ss_pred             CCEEEECC
Confidence            89999998

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.17  E-value=0.14  Score=49.45  Aligned_cols=83  Identities=8%  Similarity=-0.036  Sum_probs=52.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CCC-------cccCCHHH-HhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VSY-------PFYSNVCE-LAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~~-------~~~~~l~e-~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      ...+-|+|+|.+|+.+++.|+..|.++.+.+......   .+.       ...+.|++ -+++|+.|+++.+.++++...
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            5689999999999999999999898887766432211   111       11122333 267899999988866655432


Q ss_pred             chHHHHhcCCCCcEEE
Q 022233          238 INKQVLSALGKEGVVI  253 (300)
Q Consensus       238 i~~~~l~~mk~ga~lI  253 (300)
                        ....+.+.|...+|
T Consensus       320 --vL~ar~l~p~~kII  333 (393)
T PRK10537        320 --VLAAKEMSSDVKTV  333 (393)
T ss_pred             --HHHHHHhCCCCcEE
Confidence              23344555554443

>PLN02214 cinnamoyl-CoA reductase

Probab=94.14  E-value=0.16  Score=47.75  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC------------CCC-------cccCCHHHHhhcCCEEE
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS------------VSY-------PFYSNVCELAANCDILI  225 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~~-------~~~~~l~e~l~~aDvV~  225 (300)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+..|+....            ...       ....++.++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367899999998 9999999999999999998887754310            001       11234667788899887


Q ss_pred             EecC
Q 022233          226 ICCG  229 (300)
Q Consensus       226 l~~p  229 (300)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.13  E-value=0.14  Score=45.45  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+.||++.|.|. |.||+.+|+.|...|++|...+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999996 9999999999999999999888864

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.12  E-value=0.65  Score=43.82  Aligned_cols=91  Identities=9%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCC-CCC-------------CC--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTK-KPS-------------VS--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~-~~~-------------~~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|.+|++||-+  ++.++++..+..+|++|.+..+.. .+.             .+  .....+++++++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4779999999986  789999999999999998776543 110             01  22347899999999999885


Q ss_pred             cC----CC----hh-----hhhcchHHHHhcC-CCCcEEEEcC
Q 022233          228 CG----LT----AE-----THHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       228 ~p----~~----~~-----t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      .=    ..    ++     -.--++++.++.. +++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            31    00    01     1123577888875 7888888774

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.10  E-value=0.22  Score=46.94  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCC---EEEEECCCCCCC--C---CC-cccCCHH-HHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNSRTKKPS--V---SY-PFYSNVC-ELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~~~~~~~--~---~~-~~~~~l~-e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      +++|+|+|. |.+|+.+.+.|...|+   ++.+..+.....  .   +. ....+++ +.++++|+|++++|.... ..+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s-~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS-KKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH-HHH
Confidence            368999995 8999999999998655   445554332211  1   11 0111222 345789999999985432 222


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                      . ..+   ++.|+++||.|.
T Consensus        80 ~-~~~---~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-PKA---AAAGAVVIDNSS   95 (334)
T ss_pred             H-HHH---HhCCCEEEECCc
Confidence            2 222   357889999884

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.10  E-value=0.28  Score=46.37  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=55.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCccc---C---CHHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFY---S---NVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~---~---~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+.+...      ..++...   .   .+.++....|+|+-++.....  
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~--  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHA--  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHH--
Confidence            4789999999999999999999999998776544322      1122111   1   223333457998887652221  


Q ss_pred             hcchHHHHhcCCCCcEEEEcCC
Q 022233          236 HMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~sr  257 (300)
                        + .+.+..++++..++.++.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              1 235677788888887763

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.09  E-value=0.12  Score=48.63  Aligned_cols=28  Identities=36%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCC----CEEEEE
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFG----CSISYN  198 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g----~~V~~~  198 (300)
                      +|||+|+|+||+.+.+.+...+    ++|...
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI   32 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL   32 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            5899999999999999988653    676544

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.04  E-value=0.39  Score=44.87  Aligned_cols=83  Identities=23%  Similarity=0.251  Sum_probs=54.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c----ccCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P----FYSN  213 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~----~~~~  213 (300)
                      +|.|||+|.+|..+++.|...|. +++++|...-..             .+                 .  .    ...+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            58999999999999999999998 677777532110             00                 0  0    0111


Q ss_pred             ---HHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          214 ---VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       214 ---l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                         ..+.+++.|+|+.++- +.+.+..+++.....   +.-+|+.+.
T Consensus        81 ~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt  123 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT  123 (312)
T ss_pred             ccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence               2377889999988874 566676676555443   344666654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.01  E-value=0.3  Score=45.16  Aligned_cols=88  Identities=19%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--c----cc-C
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--P----FY-S  212 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~----~~-~  212 (300)
                      +|.|||+|.+|..+++.|...|. ++.+.|...-..             .+                 .  .    .. .
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            58999999999999999999897 677776421100             00                 0  0    01 1


Q ss_pred             CHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC-----CCCcEEEEcCCCc
Q 022233          213 NVCELAANCDILIICCGLTAETHHMINKQVLSAL-----GKEGVVINIGRGP  259 (300)
Q Consensus       213 ~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m-----k~ga~lIn~srg~  259 (300)
                      .-.+.+++.|+|+.++- +.+++..+++......     +.+.-+|+.+..+
T Consensus        81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence            12467889999988775 4566777776655543     2345577776544

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.00  E-value=0.25  Score=46.64  Aligned_cols=83  Identities=13%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHh--CCC-EEEEECCCCCCCC-----CC-cccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDA--FGC-SISYNSRTKKPSV-----SY-PFYSNVCEL-AANCDILIICCGLTAETHH  236 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~--~g~-~V~~~~~~~~~~~-----~~-~~~~~l~e~-l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+.+|+|||. |..|+.+.+.|..  +.. ++...........     +. ..+.++++. +.++|++++++|....   
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s---   79 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS---   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence            4669999998 9999999999997  543 6654432221111     10 112244443 3789999999985432   


Q ss_pred             cchHHHHhc-CCCCcEEEEcC
Q 022233          237 MINKQVLSA-LGKEGVVINIG  256 (300)
Q Consensus       237 li~~~~l~~-mk~ga~lIn~s  256 (300)
                         .++.+. .+.|..+||.|
T Consensus        80 ---~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         80 ---AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ---HHHHHHHHHCCCEEEECC
Confidence               222222 25699999998

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=93.99  E-value=0.38  Score=39.34  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=64.6

Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC---------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE
Q 022233          183 LVAKRLDAFGCSISYNSRTKKPS---------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI  253 (300)
Q Consensus       183 ~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI  253 (300)
                      ..+++|...|++|++=.-.....         .|+....+.+|++++||+|+-.=|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            56778888899998754332211         14444556679999999998876543        34567899999998


Q ss_pred             EcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      -...-.  ....+++.|.++++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            776555  588999999999999888886544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.95  E-value=0.086  Score=51.87  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCccc-CCHHHHhhcCCEEEEecC---
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFY-SNVCELAANCDILIICCG---  229 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~-~~l~e~l~~aDvV~l~~p---  229 (300)
                      +..+.+++|.|||.|.+|.++|+.|+..|++|+++++.....          .+.... ..-.+....+|+|+++.-   
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence            456789999999999999999999999999999998654211          021111 010113456899988763   


Q ss_pred             CChhhh-------hcchH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          230 LTAETH-------HMINK-QVL-SALGK----EGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       230 ~~~~t~-------~li~~-~~l-~~mk~----ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .++...       .++++ +++ ..+.+    ..+-|-=+.|..--..-|...|+..
T Consensus        91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            333211       12222 222 33322    2355555677777777777777653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.92  E-value=0.086  Score=53.03  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C------C-------cccCCHHHHh
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S------Y-------PFYSNVCELA  218 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~------~-------~~~~~l~e~l  218 (300)
                      -.|++|.|.|. |.||+.+++.|...|++|.+..|+.....              +      .       ....++.+++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            45889999996 99999999999999999998877643210              0      1       1112345568


Q ss_pred             hcCCEEEEecCC
Q 022233          219 ANCDILIICCGL  230 (300)
Q Consensus       219 ~~aDvV~l~~p~  230 (300)
                      .++|+||.++..
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            899999988643

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.92  E-value=0.42  Score=45.09  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             CEEEEEecChhHHHHHHHHHh--------CC--CEEEE-ECCCCCC--CCCC---------------c-c-------cCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA--------FG--CSISY-NSRTKKP--SVSY---------------P-F-------YSN  213 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~--------~g--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~  213 (300)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.+ .+++...  ..+.               . .       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999998876        56  45543 3432110  0000               0 0       116


Q ss_pred             HHHHh--hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce-EEEeeCCCCCCC
Q 022233          214 VCELA--ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK-GAGLDVFENEPD  288 (300)
Q Consensus       214 l~e~l--~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~-~a~LDV~~~EP~  288 (300)
                      +++++  ..+|+|+-+.+.. ...    .-....++.|.-+|-...|.+- ..++|.+..++.+.. ...-.|--.-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            67877  4799999887532 222    2233445667677766665443 556666666555432 222334445554

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.32  Score=42.62  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      +.++++.|.|. |.||+.+|+.|...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            56899999995 999999999999999998766543

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.83  E-value=0.28  Score=46.48  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC-CEEEEECCCCC-CC--C----CC-------------cc-cCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG-CSISYNSRTKK-PS--V----SY-------------PF-YSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~~~~~-~~--~----~~-------------~~-~~~l~e~l~~aDvV~l  226 (300)
                      .+|+|+| .|.+|+.+++.|..+. +++.+..++.. ..  .    +.             .. ..+. +.+.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCCCEEEE
Confidence            5899998 9999999999999765 47776622221 10  0    01             00 0123 34578999999


Q ss_pred             ecCCChhhhhcchHHHHhcC-CCCcEEEEcC
Q 022233          227 CCGLTAETHHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       227 ~~p~~~~t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      ++|.....      +..+.+ +.|..+||.+
T Consensus        83 a~p~~~s~------~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVAG------EVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             eCChhHHH------HHHHHHHHCCCEEEECC
Confidence            99865332      222222 4577778876

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.80  E-value=0.18  Score=47.40  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCC-------CEEEEECCCCCC--CCC----C-----------cccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFG-------CSISYNSRTKKP--SVS----Y-----------PFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g-------~~V~~~~~~~~~--~~~----~-----------~~~~~l~e~l~~aDvV~  225 (300)
                      +|+|+|. |.+|+.++..|...+       .+|..+|+....  ..+    .           ....++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            7999999 999999999998744       478888875422  111    0           01245678899999999


Q ss_pred             EecCCCh---hhh-hcc--hH----H---HHhcC-CCCcEEEEcCCCcccCHHH
Q 022233          226 ICCGLTA---ETH-HMI--NK----Q---VLSAL-GKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       226 l~~p~~~---~t~-~li--~~----~---~l~~m-k~ga~lIn~srg~~vd~~a  265 (300)
                      ++.-...   .++ .++  |.    +   .+... ++++++|.++  .++|.-.
T Consensus        84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (325)
T cd01336          84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA  135 (325)
T ss_pred             EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence            8764321   121 111  11    1   22333 5688888887  4555544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.77  E-value=0.15  Score=49.02  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +....+++|.|+|. |.||+.+++.|...|++|...+|+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            45677899999996 9999999999999999999888764

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.73  E-value=0.33  Score=45.98  Aligned_cols=81  Identities=19%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHh-CCCE---EEEEC-CCC-CCCCCC---c-cc--CCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDA-FGCS---ISYNS-RTK-KPSVSY---P-FY--SNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~-~g~~---V~~~~-~~~-~~~~~~---~-~~--~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      +.+|||||. |..|+.+.+.|.. -.+.   +..+. .+. ......   . ..  .+.+ .+.++|++++++|... ..
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~~-s~   82 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGEV-SR   82 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChHH-HH
Confidence            469999998 9999999999984 4455   43332 221 111111   0 11  1333 3588999999998542 22


Q ss_pred             hcchHHHHhc-CCCCcEEEEcC
Q 022233          236 HMINKQVLSA-LGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~-mk~ga~lIn~s  256 (300)
                           ++... .+.|+.+||.|
T Consensus        83 -----~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         83 -----QFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             -----HHHHHHHHCCCEEEECc
Confidence                 22222 35789999998

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.73  E-value=0.16  Score=47.76  Aligned_cols=35  Identities=29%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      +++++|.|.|. |-||+.+++.|...|.+|+++++.
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            66799999995 999999999999999999988874

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=93.69  E-value=0.4  Score=45.33  Aligned_cols=93  Identities=15%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             ccccCCCEEEEEec---ChhHHHHHHHHH-hCCCEEEEECCCCCC-C---------CC--CcccCCHHHHhhcCCEEEEe
Q 022233          164 GSKLGGKRVGIVGL---GSIGSLVAKRLD-AFGCSISYNSRTKKP-S---------VS--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       164 g~~l~g~~vgIiG~---G~IG~~~A~~l~-~~g~~V~~~~~~~~~-~---------~~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      |..+.|.+|++||=   +++..+.+..+. .+|++|.+..+..-. .         .+  .....++++++++||+|..-
T Consensus       154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            33478999999999   578888888766 459999877664321 1         01  22347899999999999884


Q ss_pred             cCCC------hhh-----hhcchHHHH-hcCCCCcEEEEcC
Q 022233          228 CGLT------AET-----HHMINKQVL-SALGKEGVVINIG  256 (300)
Q Consensus       228 ~p~~------~~t-----~~li~~~~l-~~mk~ga~lIn~s  256 (300)
                      .--.      ...     .-.++.+.+ ..++++++|.-+.
T Consensus       234 ~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL  274 (338)
T PRK08192        234 RIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL  274 (338)
T ss_pred             CcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence            2110      110     123456666 4578888887764

>PRK05865 hypothetical protein; Provisional

Probab=93.63  E-value=0.43  Score=50.41  Aligned_cols=90  Identities=20%  Similarity=0.281  Sum_probs=57.4

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CC-------cccCCHHHHhhcCCEEEEecCCChhh--hhc
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SY-------PFYSNVCELAANCDILIICCGLTAET--HHM  237 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~-------~~~~~l~e~l~~aDvV~l~~p~~~~t--~~l  237 (300)
                      |+|.|.|. |.||+.+++.|...|++|.+.+++.....  ..       ....++.++++++|+|+.+.......  .++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            47899995 99999999999999999998887642211  11       11234567788999988876432110  011


Q ss_pred             c-hHHHHhcCCCC--cEEEEcCCCc
Q 022233          238 I-NKQVLSALGKE--GVVINIGRGP  259 (300)
Q Consensus       238 i-~~~~l~~mk~g--a~lIn~srg~  259 (300)
                      . ...+++.|+..  ..+|.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 22344444432  3688888775

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.62  E-value=0.46  Score=42.46  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ++.||++.|.|.+   .||+++|+.|...|++|...+++.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999986   699999999999999998877764

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=93.60  E-value=0.39  Score=46.28  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=93.0

Q ss_pred             CCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHH
Q 022233          107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK  186 (300)
Q Consensus       107 ~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~  186 (300)
                      ..|+|.|..-   .-+|=.+++-+++.+|-                        .  |..|+..+|.+.|.|.-|-.+++
T Consensus       166 ~~IPvFhDDq---qGTaiv~lA~llnalk~------------------------~--gk~l~d~kiv~~GAGAAgiaia~  216 (432)
T COG0281         166 MNIPVFHDDQ---QGTAIVTLAALLNALKL------------------------T--GKKLKDQKIVINGAGAAGIAIAD  216 (432)
T ss_pred             CCCCcccccc---cHHHHHHHHHHHHHHHH------------------------h--CCCccceEEEEeCCcHHHHHHHH
Confidence            3566666532   34566677777776553                        1  66788999999999999999999


Q ss_pred             HHHhCCC---EEEEECCCCCC-----C---CCCcc---------cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          187 RLDAFGC---SISYNSRTKKP-----S---VSYPF---------YSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       187 ~l~~~g~---~V~~~~~~~~~-----~---~~~~~---------~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      .+.+.|+   +|+..|+..--     .   .....         ..+ ++.+..+|+++-+-   .  .+.+.++..+.|
T Consensus       217 ~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S---~--~G~~t~e~V~~M  290 (432)
T COG0281         217 LLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS---G--VGAFTEEMVKEM  290 (432)
T ss_pred             HHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC---C--CCCcCHHHHHHh
Confidence            9999998   58888765211     0   00000         011 45788899777652   2  288999999999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhC-CceEEE
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQG-EIKGAG  279 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~~-~i~~a~  279 (300)
                      .+.+++.=+|-..+--....+.+...+ .|.+-|
T Consensus       291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG  324 (432)
T COG0281         291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVATG  324 (432)
T ss_pred             ccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC
Confidence            999999999877754444444444444 454443

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.59  E-value=0.2  Score=46.69  Aligned_cols=92  Identities=15%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC------C---Cccc-----CCHHHHhhcCCEEEEecCCC-
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV------S---YPFY-----SNVCELAANCDILIICCGLT-  231 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~------~---~~~~-----~~l~e~l~~aDvV~l~~p~~-  231 (300)
                      ++|+|||. |.+|.++|-.|...|.  ++..+|.+.....      .   ....     +++.+.+++||+|+++.-.. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            48999999 9999999999987775  7888887621110      1   1111     23468899999999876532 


Q ss_pred             -h-hhhh-cc--hHH-------HHhcCCCCcEEEEcCCCcccCH
Q 022233          232 -A-ETHH-MI--NKQ-------VLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       232 -~-~t~~-li--~~~-------~l~~mk~ga~lIn~srg~~vd~  263 (300)
                       + +++. ++  |.+       .+..-.|.+++|+++-  ++|.
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN--PvDv  122 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN--PVNS  122 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chhh
Confidence             1 2221 22  111       2233468899999964  4554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.59  E-value=0.16  Score=46.65  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|+.....     +.       ....++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47889985 99999999999999999998887654311     11       112346677888998887664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.50  E-value=0.3  Score=45.68  Aligned_cols=87  Identities=15%  Similarity=0.236  Sum_probs=55.2

Q ss_pred             CCCEEEEEecChhHHHHHHHHHh-CC-CEEEEECCCCCCCC---CCcccCCHHHHhh--cCCEEEEecCCChhhhhcchH
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDA-FG-CSISYNSRTKKPSV---SYPFYSNVCELAA--NCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~-~g-~~V~~~~~~~~~~~---~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .|.+|.|+|.|.||...++.++. +| .+|++.++++.+..   ........+++..  ..|+|+-++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            37899999999999999998885 55 57888887654321   1111111222222  379999887631 011112 3


Q ss_pred             HHHhcCCCCcEEEEcC
Q 022233          241 QVLSALGKEGVVINIG  256 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~s  256 (300)
                      ..+..++++..++.++
T Consensus       241 ~~~~~l~~~G~iv~~G  256 (341)
T cd08237         241 QIIDYIRPQGTIGLMG  256 (341)
T ss_pred             HHHHhCcCCcEEEEEe
Confidence            4677889988888776

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.47  E-value=0.19  Score=47.77  Aligned_cols=61  Identities=25%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCc-------ccCCHHHHhhcCCEEEEec
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYP-------FYSNVCELAANCDILIICC  228 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~-------~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+|+|.|.|. |.||+.+++.|...|++|.+.+|......     ...       ...++..+++++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5789999998 99999999999999999998886432110     011       1123445667899888665

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.47  E-value=0.2  Score=46.65  Aligned_cols=63  Identities=19%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCCC-------------C--cccC-CHHHHhhcCCEEEEec--C
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSVS-------------Y--PFYS-NVCELAANCDILIICC--G  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~~-------------~--~~~~-~l~e~l~~aDvV~l~~--p  229 (300)
                      ++|+|||.|.||+++|-+|...+  -++..+|...+...+             .  .... .-.+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            48999999999999999996444  478888887443211             0  0111 1146789999999988  5


Q ss_pred             CCh
Q 022233          230 LTA  232 (300)
Q Consensus       230 ~~~  232 (300)
                      ..|
T Consensus        81 rKp   83 (313)
T COG0039          81 RKP   83 (313)
T ss_pred             CCC
Confidence            444

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=93.43  E-value=0.29  Score=46.27  Aligned_cols=81  Identities=19%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             EEEEEe-cChhHHHHHHHHHhCCCE---EEEECCCCCCC--C---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhhcch
Q 022233          171 RVGIVG-LGSIGSLVAKRLDAFGCS---ISYNSRTKKPS--V---SYP-FYSNV-CELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       171 ~vgIiG-~G~IG~~~A~~l~~~g~~---V~~~~~~~~~~--~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      +|+||| .|.+|+.+++.|...++.   +.++.+.....  .   +.. ...++ .+.+.++|+++.++|.....+  +-
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~--~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKE--FA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHH--HH
Confidence            589999 899999999999986653   33443332211  1   110 11111 234589999999998543322  22


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 022233          240 KQVLSALGKEGVVINIG  256 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~s  256 (300)
                      ..+   ++.|+++||.|
T Consensus        79 ~~~---~~~G~~VID~s   92 (339)
T TIGR01296        79 PKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHH---HHCCCEEEECC
Confidence            222   35688999988

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.41  E-value=0.095  Score=45.60  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=31.8

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR  200 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~  200 (300)
                      ..|++++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~   51 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDH   51 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            35899999999999999999999999998 5777764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=93.38  E-value=0.44  Score=45.13  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCC---EEEEEC--CCCCCCC---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhh
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNS--RTKKPSV---SYP-FYSNV-CELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~--~~~~~~~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      ...+|+|+|. |.+|+.+.+.|...++   ++.+..  ++..+..   +.. ...++ .+.+.++|+|++++|.... ..
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s-~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS-KK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH-HH
Confidence            3568999995 8999999999998554   443332  2211111   100 11112 2456889999999985532 22


Q ss_pred             cchHHHHhcCCCCcEEEEcC
Q 022233          237 MINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~s  256 (300)
                      +. .+   ..+.|+.+||.|
T Consensus        85 ~~-~~---~~~~g~~VIDlS  100 (344)
T PLN02383         85 FG-PI---AVDKGAVVVDNS  100 (344)
T ss_pred             HH-HH---HHhCCCEEEECC
Confidence            22 11   125789999998

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.37  E-value=0.61  Score=45.21  Aligned_cols=103  Identities=17%  Similarity=0.215  Sum_probs=66.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----------CCCccc--CCHHHHhhcCCEEEEecCC---Chhh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----------VSYPFY--SNVCELAANCDILIICCGL---TAET  234 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----------~~~~~~--~~l~e~l~~aDvV~l~~p~---~~~t  234 (300)
                      ++.|||+|.+|.++|+.|+..|++|.++|....+.           .+....  .+ .+.+.++|+|+..--.   +|+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            47899999999999999999999999999654321           122111  23 4556789988875422   2322


Q ss_pred             h-------hcchH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          235 H-------HMINK-QVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       235 ~-------~li~~-~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      .       .++.+ +++ ..++...+-|-=+.|..--..-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       12322 232 3344445666667888888887888887654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.37  E-value=0.16  Score=45.35  Aligned_cols=66  Identities=21%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCCc-----c---cCCHHHHh-hcCCEEEEe
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYP-----F---YSNVCELA-ANCDILIIC  227 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~~-----~---~~~l~e~l-~~aDvV~l~  227 (300)
                      ....+++|.|+|. |.||+.+++.|...|++|++..|+....       ..+.     .   ..++.+.+ ...|+|+.+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            3477899999995 9999999999999999998877654321       0111     0   11234455 579999987


Q ss_pred             cCC
Q 022233          228 CGL  230 (300)
Q Consensus       228 ~p~  230 (300)
                      .+.
T Consensus        93 ~g~   95 (251)
T PLN00141         93 TGF   95 (251)
T ss_pred             CCC
Confidence            664

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.36  E-value=0.29  Score=44.76  Aligned_cols=38  Identities=32%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ..+.|+++.|.|. |.||..+|+.|...|++|+..+++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4688999999995 7899999999999999998887754

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.35  E-value=0.16  Score=47.65  Aligned_cols=66  Identities=21%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCC-------cccCCHHHHhhcCCEEE
Q 022233          164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSY-------PFYSNVCELAANCDILI  225 (300)
Q Consensus       164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~-------~~~~~l~e~l~~aDvV~  225 (300)
                      |++..+++|.|.| .|-||+.+++.|...|++|.+.+++....          ...       .....+++++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            6678899999999 59999999999999999998876653211          001       11123556777889777


Q ss_pred             EecC
Q 022233          226 ICCG  229 (300)
Q Consensus       226 l~~p  229 (300)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.34  E-value=0.29  Score=45.21  Aligned_cols=61  Identities=23%  Similarity=0.219  Sum_probs=43.9

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCcccCCHHHHhhcCCEEEEe
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS---------V-----------SYPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~-----------~~~~~~~l~e~l~~aDvV~l~  227 (300)
                      ||++.|.|. |.||+.+++.|...|++|.+..++....         .           ......+++++++..|+|+.+
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~   84 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT   84 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence            789999995 9999999999999999997765543210         0           011123466778889988776


Q ss_pred             cC
Q 022233          228 CG  229 (300)
Q Consensus       228 ~p  229 (300)
                      ..
T Consensus        85 A~   86 (325)
T PLN02989         85 AS   86 (325)
T ss_pred             CC
Confidence            64

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.23  E-value=0.13  Score=47.10  Aligned_cols=59  Identities=29%  Similarity=0.380  Sum_probs=40.1

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhc--CCEEEEecCCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAAN--CDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~  231 (300)
                      |+|.|+| -|.+|+.+.+.|...|++|..+++..-.   ......+.+++++  .|+|+.|...+
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d---l~d~~~~~~~~~~~~pd~Vin~aa~~   62 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD---LTDPEAVAKLLEAFKPDVVINCAAYT   62 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS----TTSHHHHHHHHHHH--SEEEE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC---CCCHHHHHHHHHHhCCCeEeccceee
Confidence            5899999 6999999999999999999988776221   2223345566554  79998887543

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.23  E-value=0.28  Score=43.07  Aligned_cols=38  Identities=29%  Similarity=0.480  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++.++++.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999996 89999999999999999999988753

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.18  E-value=0.25  Score=46.11  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCH-HHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNV-CELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l-~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      |.+|.|.|.|.+|...++.++..|.+|++.+++++..     .++....+. ++.-+..|+++.+.... .    .-...
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~~  240 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPPA  240 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHHH
Confidence            7899999999999999999999999988887765431     122211111 11113467777665432 2    12456


Q ss_pred             HhcCCCCcEEEEcCC
Q 022233          243 LSALGKEGVVINIGR  257 (300)
Q Consensus       243 l~~mk~ga~lIn~sr  257 (300)
                      ++.++++..++.++.
T Consensus       241 ~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       241 LEALDRGGVLAVAGI  255 (329)
T ss_pred             HHhhCCCcEEEEEec
Confidence            778889988888764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=93.17  E-value=0.7  Score=44.47  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-E------EEEE--CCCCCCCCC---------------CcccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGC-S------ISYN--SRTKKPSVS---------------YPFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~-~------V~~~--~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~  225 (300)
                      +|+|||. |.+|..+|-.+...|. .      +..+  |.+.+...+               .....+-.+.+++||+|+
T Consensus        46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV  125 (387)
T TIGR01757        46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL  125 (387)
T ss_pred             EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence            9999999 9999999999886554 2      3344  665443210               011124457899999999


Q ss_pred             EecCCC--h-hhhh-cc--h----HHHH---hc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          226 ICCGLT--A-ETHH-MI--N----KQVL---SA-LGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       226 l~~p~~--~-~t~~-li--~----~~~l---~~-mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ++.-..  + +++. ++  |    ++..   .. -++.+++|.++  .++|.-..+-.-.+
T Consensus       126 itAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~k~s  184 (387)
T TIGR01757       126 LIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAMKNA  184 (387)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            975431  1 1221 11  1    1221   22 34788999887  67777766554333

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK13529 malate dehydrogenase; Provisional

Probab=93.15  E-value=2.5  Score=42.45  Aligned_cols=164  Identities=17%  Similarity=0.234  Sum_probs=107.1

Q ss_pred             CCCcceEEEcCCCCCC-CChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCcccc
Q 022233           83 MPAVRLVMTTSAGLNH-VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSL  161 (300)
Q Consensus        83 ~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  161 (300)
                      +|+. +|+.-=-+..+ +.+..--+..|.+.|..   -..+|-.+++-+|+..|-.                        
T Consensus       238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD---iQGTaaV~LAgll~A~r~~------------------------  289 (563)
T PRK13529        238 FPNA-LLQFEDFAQKNARRILERYRDEICTFNDD---IQGTGAVTLAGLLAALKIT------------------------  289 (563)
T ss_pred             CCCe-EEehhhcCCchHHHHHHHhccCCCeeccc---cchHHHHHHHHHHHHHHHh------------------------
Confidence            4664 55554444433 33333344578888874   3456777888888877731                        


Q ss_pred             CcccccCCCEEEEEecChhHHHHHHHHHh----CCC-------EEEEECCCCC-----CCC---------CCc-------
Q 022233          162 GIGSKLGGKRVGIVGLGSIGSLVAKRLDA----FGC-------SISYNSRTKK-----PSV---------SYP-------  209 (300)
Q Consensus       162 ~~g~~l~g~~vgIiG~G~IG~~~A~~l~~----~g~-------~V~~~~~~~~-----~~~---------~~~-------  209 (300)
                        |..|.+.+|.|+|.|..|-.+|+.+..    .|.       +++.+|+..-     ...         ...       
T Consensus       290 --g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~  367 (563)
T PRK13529        290 --GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT  367 (563)
T ss_pred             --CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence              445788999999999999999999886    587       7887776421     100         000       


Q ss_pred             --ccCCHHHHhhcC--CEEEEecCCChhhhhcchHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hC-CceEEE
Q 022233          210 --FYSNVCELAANC--DILIICCGLTAETHHMINKQVLSALGK---EGVVINIGRGPIIDEQELVRCLV--QG-EIKGAG  279 (300)
Q Consensus       210 --~~~~l~e~l~~a--DvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~srg~~vd~~aL~~aL~--~~-~i~~a~  279 (300)
                        ...+|.|+++.+  |+++=+-    ..-+.++++.++.|.+   ..+|.=.|....-.|-.-.+|.+  +| -|.+.|
T Consensus       368 ~~~~~~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtG  443 (563)
T PRK13529        368 EGDVISLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATG  443 (563)
T ss_pred             ccCCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEEC
Confidence              114799999998  8877642    2236799999999987   89999999888743333333333  45 455444


Q ss_pred             e
Q 022233          280 L  280 (300)
Q Consensus       280 L  280 (300)
                      .
T Consensus       444 s  444 (563)
T PRK13529        444 S  444 (563)
T ss_pred             C
Confidence            4

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.14  E-value=0.22  Score=45.01  Aligned_cols=57  Identities=16%  Similarity=0.199  Sum_probs=42.8

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcC--CEEEEecCC
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANC--DILIICCGL  230 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~a--DvV~l~~p~  230 (300)
                      +|.|+|. |.||+.+++.|...|++|...+|...   ......++.++++.+  |+|+.+...
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            4778885 99999999999999999998887521   122234567777766  999877643

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02427 UDP-apiose/xylose synthase

Probab=93.12  E-value=0.21  Score=47.51  Aligned_cols=65  Identities=17%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhC-CCEEEEECCCCCCC-----C-------CC-------cccCCHHHHhhcCC
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAF-GCSISYNSRTKKPS-----V-------SY-------PFYSNVCELAANCD  222 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~-g~~V~~~~~~~~~~-----~-------~~-------~~~~~l~e~l~~aD  222 (300)
                      |..+..|+|.|.|. |-||+.+++.|... |++|.+.+++....     .       ..       .....+.++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            56677889999995 99999999999987 58999888653210     0       01       11224567788899


Q ss_pred             EEEEec
Q 022233          223 ILIICC  228 (300)
Q Consensus       223 vV~l~~  228 (300)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            877654

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.11  E-value=0.43  Score=42.67  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++.++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999996 89999999999999999999888653

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.07  E-value=0.11  Score=55.87  Aligned_cols=88  Identities=13%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC----------------------------------CCCCCC----
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK----------------------------------KPSVSY----  208 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~----------------------------------~~~~~~----  208 (300)
                      +.-.++.|+|.|+.|+..++.+..+|.+ . .++..                                  .+...+    
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~  278 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD  278 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence            3457999999999999999999888654 1 11000                                  000000    


Q ss_pred             ------cccCC-HHHHhhcCCEEEEecCCChhhhhcchHH-HHhcCCCCc----EEEEcC
Q 022233          209 ------PFYSN-VCELAANCDILIICCGLTAETHHMINKQ-VLSALGKEG----VVINIG  256 (300)
Q Consensus       209 ------~~~~~-l~e~l~~aDvV~l~~p~~~~t~~li~~~-~l~~mk~ga----~lIn~s  256 (300)
                            .+... +++.+..+|+||.++-..+.+..++.++ ..+.||+|.    +|+|+|
T Consensus       279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                  01111 3568899999999998777788899888 788899998    899987

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=93.05  E-value=0.82  Score=43.16  Aligned_cols=96  Identities=9%  Similarity=0.082  Sum_probs=62.0

Q ss_pred             c-CCCEEEEEecC-------hhHHHHHHHHHhCCCEEEEECC-CCCCC--------------CC--CcccCCHHHHhhcC
Q 022233          167 L-GGKRVGIVGLG-------SIGSLVAKRLDAFGCSISYNSR-TKKPS--------------VS--YPFYSNVCELAANC  221 (300)
Q Consensus       167 l-~g~~vgIiG~G-------~IG~~~A~~l~~~g~~V~~~~~-~~~~~--------------~~--~~~~~~l~e~l~~a  221 (300)
                      + .|++|+|+|.|       ++.++++..+..+|++|.+..+ ..-..              .+  .....++++++++|
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68899887644       7888999999999999988877 32110              01  22357899999999


Q ss_pred             CEEEEecCCC-----h-----hh-----hhcchHHHHhcCCCCcEEEEcC---CCcccCH
Q 022233          222 DILIICCGLT-----A-----ET-----HHMINKQVLSALGKEGVVINIG---RGPIIDE  263 (300)
Q Consensus       222 DvV~l~~p~~-----~-----~t-----~~li~~~~l~~mk~ga~lIn~s---rg~~vd~  263 (300)
                      |+|..-.--.     +     ..     .-.++++.++.. ++++|.-+.   ||.=|+.
T Consensus       246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a-~~~i~mHcLP~~Rg~Ei~~  304 (335)
T PRK04523        246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKVTD  304 (335)
T ss_pred             CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCC-CCCEEECCCCCCCCCeeCH
Confidence            9998754211     0     11     123567777655 467776664   5554443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.04  E-value=0.29  Score=46.31  Aligned_cols=83  Identities=25%  Similarity=0.321  Sum_probs=56.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------CCCcccC-----CH----HHHh--hcCCEEEEecCCCh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------VSYPFYS-----NV----CELA--ANCDILIICCGLTA  232 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------~~~~~~~-----~l----~e~l--~~aDvV~l~~p~~~  232 (300)
                      ++.|+|.|.||...+..++.+|. +|++.|+++...      .+.....     ..    .++-  ..+|+++-+.. ++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~  249 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP  249 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence            99999999999999999999997 677888866432      1211111     11    1222  34999999987 22


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .    .-.+.+...+++..++.++-.
T Consensus       250 ~----~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         250 P----ALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             H----HHHHHHHHhcCCCEEEEEecc
Confidence            2    124566778888888887744

>PRK06196 oxidoreductase; Provisional

Probab=93.01  E-value=0.25  Score=45.58  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ..+.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3467899999998 78999999999999999998888643

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.99  E-value=0.24  Score=46.50  Aligned_cols=95  Identities=18%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CCc--------ccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKP--SV-------SYP--------FYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~--~~-------~~~--------~~~~l~e~l~~aDvV~  225 (300)
                      +|+|||. |.+|..+|..|...|.       ++..+|+.+..  ..       ...        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999986554       48888875432  11       000        0124568899999999


Q ss_pred             EecCCCh---hhh-hcc--h----HH---HHhcC-CCCcEEEEcCCCcccCHHHHH
Q 022233          226 ICCGLTA---ETH-HMI--N----KQ---VLSAL-GKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       226 l~~p~~~---~t~-~li--~----~~---~l~~m-k~ga~lIn~srg~~vd~~aL~  267 (300)
                      ++.-...   +|+ .++  |    ++   .+... ++.+++|.++  .++|.-.-+
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t~v  134 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNALV  134 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHH
Confidence            8764321   122 111  1    11   23334 4778888887  666665533

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK14852 hypothetical protein; Provisional

Probab=92.94  E-value=0.34  Score=51.60  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR  200 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~  200 (300)
                      .|++++|+|||+|.+|..+|+.|...|. ++...|.
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~  364 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF  364 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            5899999999999999999999999997 6666653

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.87  Score=40.35  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .++.|+++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4588999999995 79999999999999999998887653

>PRK06398 aldose dehydrogenase; Validated

Probab=92.92  E-value=0.55  Score=41.90  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +++||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            477999999995 58999999999999999998887654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.88  E-value=0.37  Score=46.42  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             cCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      ..|++|+|+|+          ..-...+++.|...|.+|.+||+.-....  +....+++.+++++||.|++..
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR  367 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence            46899999999          35677999999999999999998743322  3456789999999999999975

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=92.81  E-value=0.16  Score=47.17  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             EEecChhHHHHHHHHHhCCC--EEEEECCCCCCCCC---------------CcccCCHHHHhhcCCEEEEecCCC--h-h
Q 022233          174 IVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSVS---------------YPFYSNVCELAANCDILIICCGLT--A-E  233 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~---------------~~~~~~l~e~l~~aDvV~l~~p~~--~-~  233 (300)
                      |||.|.+|..+|-.|...+.  ++..+|.+.+...+               .....+-.+.+++||+|+++.-..  + .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            68999999999999987775  68899986543210               111123457899999999976431  1 1


Q ss_pred             hh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          234 TH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       234 t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ++ .++  |.       ..+....+.+++|+++  .++|.-.
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t  120 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT  120 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence            12 111  11       1233346889999987  4555443

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.78  E-value=0.28  Score=43.96  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCC
Q 022233          166 KLGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       166 ~l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      ++.||++.|.|.   +.||+++|+.|...|++|....++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            367999999997   489999999999999998766543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.78  E-value=0.5  Score=45.04  Aligned_cols=84  Identities=25%  Similarity=0.452  Sum_probs=53.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCccc---CC---HHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFY---SN---VCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~---~~---l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.+.      ..++...   .+   +.+.....|+|+-++.....  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~--  255 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA--  255 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence            4789999999999999999999999998877654321      1122111   11   22233457888887642211  


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                        + ...++.++++..++.++
T Consensus       256 --~-~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        256 --L-LPLFSLLKVSGKLVALG  273 (375)
T ss_pred             --H-HHHHHhhcCCCEEEEEc
Confidence              1 23455667777777665

>PRK08324 short chain dehydrogenase; Validated

Probab=92.68  E-value=0.23  Score=51.22  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          165 SKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       165 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ..+.|+++.|.| .|.||+.+|+.|...|++|+..+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            347899999999 599999999999999999999888653

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.65  E-value=0.49  Score=43.93  Aligned_cols=84  Identities=27%  Similarity=0.405  Sum_probs=56.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-c--C--C-HHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-Y--S--N-VCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-~--~--~-l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |.++.|.|.|.+|+.+++.++.+|.+|++.+++.+..     .+... .  .  + ..+.-...|+++-+++...     
T Consensus       170 g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~-----  244 (337)
T cd05283         170 GKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH-----  244 (337)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc-----
Confidence            6799999999999999999999999998887764321     11111 0  1  1 1222356799988876431     


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                      .....+..+++++.+++++.
T Consensus       245 ~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             hHHHHHHHhcCCCEEEEEec
Confidence            12455677777778877763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=92.64  E-value=1.7  Score=35.61  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             cCCCEEEEEecC----hhHHHHHHHHHhCCCEEEEECCCCC--CCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          167 LGGKRVGIVGLG----SIGSLVAKRLDAFGCSISYNSRTKK--PSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       167 l~g~~vgIiG~G----~IG~~~A~~l~~~g~~V~~~~~~~~--~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+-|+|+++|+.    +=+..+++.|...|++|+=.++...  ...|...+.||.|+-+.-|+|-+--|.. ....+. +
T Consensus        14 ~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e-~~~~i~-~   91 (140)
T COG1832          14 KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSE-AAPEVA-R   91 (140)
T ss_pred             HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChh-hhHHHH-H
Confidence            457899999995    5688999999999999998888443  4456677899999999999999987743 333333 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      +.++ +....+|...   ++.++++-..+-+.|
T Consensus        92 eal~-~~~kv~W~Ql---Gi~n~ea~~~~~~aG  120 (140)
T COG1832          92 EALE-KGAKVVWLQL---GIRNEEAAEKARDAG  120 (140)
T ss_pred             HHHh-hCCCeEEEec---CcCCHHHHHHHHHhC
Confidence            4444 2366788776   467777554443333

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.57  E-value=0.37  Score=43.25  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=32.0

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.|+++.|.|. |.||+.+|+.|...|++|...+|+.
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            56889999997 8899999999999999998888764

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=92.50  E-value=0.62  Score=46.52  Aligned_cols=91  Identities=13%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             ccCCCEEEEEec---ChhHHHHHHHHHhCC-CEEEEECCCCCC-C---------CC--CcccCCHHHHhhcCCEE--EE-
Q 022233          166 KLGGKRVGIVGL---GSIGSLVAKRLDAFG-CSISYNSRTKKP-S---------VS--YPFYSNVCELAANCDIL--II-  226 (300)
Q Consensus       166 ~l~g~~vgIiG~---G~IG~~~A~~l~~~g-~~V~~~~~~~~~-~---------~~--~~~~~~l~e~l~~aDvV--~l-  226 (300)
                      .+.|.+|+++|=   +++..+++..+..+| ++|.+..+..-. .         .+  .....++++++++||+.  +. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            477999999999   589999999999998 899877653321 1         02  22357899999999952  23 


Q ss_pred             ------ecCCC--h---hh--hhcchHHHHhcCCCCcEEEEcC
Q 022233          227 ------CCGLT--A---ET--HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       227 ------~~p~~--~---~t--~~li~~~~l~~mk~ga~lIn~s  256 (300)
                            .+...  +   ..  .-.++++.++.++++++|.-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12211  0   11  2245888899899999888774

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=92.48  E-value=0.29  Score=46.47  Aligned_cols=57  Identities=18%  Similarity=0.204  Sum_probs=41.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C-C-----cccCC---HHHHhh--cCCEEEEe
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S-Y-----PFYSN---VCELAA--NCDILIIC  227 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~-~-----~~~~~---l~e~l~--~aDvV~l~  227 (300)
                      +|+|||.|..|..+++.++.+|++|++++.++.... . +     ..+.+   +.++++  ++|+|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            589999999999999999999999999888754321 0 0     01123   445565  68988754

This enzyme is an alternative to PurN (TIGR00639)

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=92.43  E-value=0.64  Score=43.90  Aligned_cols=82  Identities=12%  Similarity=0.116  Sum_probs=49.2

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCC-CEEEEE-CCCCCCC--C----C------C----c--ccCCH-HHHhhcCCEEEEe
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFG-CSISYN-SRTKKPS--V----S------Y----P--FYSNV-CELAANCDILIIC  227 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~-~~~~~~~--~----~------~----~--~~~~l-~e~l~~aDvV~l~  227 (300)
                      ++|+|+|. |.+|+.+++.|.... +++... +......  .    +      .    .  .+.++ .+.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999998765 677644 4322110  0    0      0    0  00011 2345889999999


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +|..-... +. ..+   ++.|..+||.|
T Consensus        81 ~p~~~s~~-~~-~~~---~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVAEE-VE-PKL---AEAGKPVFSNA  104 (341)
T ss_pred             CCHHHHHH-HH-HHH---HHCCCEEEECC
Confidence            98653322 21 222   24577777765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK06153 hypothetical protein; Provisional

Probab=92.36  E-value=0.16  Score=48.68  Aligned_cols=92  Identities=18%  Similarity=0.355  Sum_probs=59.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC--------CC-----C-CCC-------------------c--
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK--------KP-----S-VSY-------------------P--  209 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~--------~~-----~-~~~-------------------~--  209 (300)
                      .|++++|+|||+|.+|..++..|.+.|. ++..+|...        ..     . .+.                   .  
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~  252 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH  252 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence            6899999999999999999999999998 777776421        10     0 000                   0  


Q ss_pred             --cc-CCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233          210 --FY-SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       210 --~~-~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  261 (300)
                        .. .+-.+.+.++|+|+.|+- +.+.+.++++.....   +.-+|++|-+-.+
T Consensus       253 ~~~I~~~n~~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l~~  303 (393)
T PRK06153        253 PEYIDEDNVDELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGLEL  303 (393)
T ss_pred             eecCCHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeeccee
Confidence              00 011135677888888875 444566666555443   4456777655444

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.34  E-value=0.52  Score=43.72  Aligned_cols=85  Identities=26%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCcc---c--CCH---HHHhh--cCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS-----VSYPF---Y--SNV---CELAA--NCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~-----~~~~~---~--~~l---~e~l~--~aDvV~l~~p~~~  232 (300)
                      |.+|.|+|.|.+|...++.++.+|.+ |++.+++.+..     .++..   .  .+.   .++..  ..|+|+-+.....
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~  243 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTA  243 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHH
Confidence            88999999999999999999999998 88887654321     12111   0  112   22222  4798888765322


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .     ....+..+++++.++.++..
T Consensus       244 ~-----~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         244 A-----RRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             H-----HHHHHHHhhcCCEEEEEcCC
Confidence            1     13456678888888877643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=92.33  E-value=0.49  Score=42.35  Aligned_cols=82  Identities=22%  Similarity=0.289  Sum_probs=57.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCc---ccCCHHHHhh---cCCEEEE-----
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYP---FYSNVCELAA---NCDILII-----  226 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~---~~~~l~e~l~---~aDvV~l-----  226 (300)
                      +.|++|.=||+|  |..+++-++..|.+|++.|.+++...         +..   ...+.+|+.+   ..|+|++     
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            689999999998  46899999999999999998765421         111   2346677765   6899887     


Q ss_pred             ecCCChhhhhcchHHHHhcCCCCcEEEE
Q 022233          227 CCGLTAETHHMINKQVLSALGKEGVVIN  254 (300)
Q Consensus       227 ~~p~~~~t~~li~~~~l~~mk~ga~lIn  254 (300)
                      |+|..+.    +-....+.+|||++++-
T Consensus       136 Hv~dp~~----~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         136 HVPDPES----FLRACAKLVKPGGILFL  159 (243)
T ss_pred             ccCCHHH----HHHHHHHHcCCCcEEEE
Confidence            4443222    33457788899877553

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.33  E-value=0.35  Score=45.26  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +.||+|.|.|. |-||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            45889999995 99999999999999999998887543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=92.28  E-value=3.2  Score=41.72  Aligned_cols=141  Identities=11%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             CCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHH
Q 022233          107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK  186 (300)
Q Consensus       107 ~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~  186 (300)
                      ..|.+.|..   -..+|-.+++-+|+.+|-.                          |..|...+|.|+|.|..|-.+|+
T Consensus       264 ~~i~~FnDD---iQGTaaV~lAgll~Alr~~--------------------------g~~l~d~riv~~GAGsAgiGia~  314 (559)
T PTZ00317        264 NKYRCFNDD---IQGTGAVIAAGFLNALKLS--------------------------GVPPEEQRIVFFGAGSAAIGVAN  314 (559)
T ss_pred             cCCCEeccc---chhHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEECCCHHHHHHHH
Confidence            347777763   2356677777778776631                          45588899999999999999999


Q ss_pred             HHHh----CCC-------EEEEECCCC-----C-C-CC--------CC--cc---cCCHHHHhhcC--CEEEEecCCChh
Q 022233          187 RLDA----FGC-------SISYNSRTK-----K-P-SV--------SY--PF---YSNVCELAANC--DILIICCGLTAE  233 (300)
Q Consensus       187 ~l~~----~g~-------~V~~~~~~~-----~-~-~~--------~~--~~---~~~l~e~l~~a--DvV~l~~p~~~~  233 (300)
                      .+..    .|.       +++.+|+..     . . ..        ..  ..   ..+|.|+++..  |+++=+-    .
T Consensus       315 ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~  390 (559)
T PTZ00317        315 NIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----G  390 (559)
T ss_pred             HHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----C
Confidence            8873    677       677777542     1 1 00        00  11   35899999998  9887642    1


Q ss_pred             hhhcchHHHHhcCCC---CcEEEEcCCCccc---CHHHHHHHHHhCCceEEEe
Q 022233          234 THHMINKQVLSALGK---EGVVINIGRGPII---DEQELVRCLVQGEIKGAGL  280 (300)
Q Consensus       234 t~~li~~~~l~~mk~---ga~lIn~srg~~v---d~~aL~~aL~~~~i~~a~L  280 (300)
                      ..+.|+++.++.|.+   ..+|.=.|....-   ..++.+++=+.+-|.+.|.
T Consensus       391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs  443 (559)
T PTZ00317        391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS  443 (559)
T ss_pred             CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence            236789999999984   8999999887643   3333333322333554443

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=92.26  E-value=1.3  Score=41.10  Aligned_cols=92  Identities=14%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             cCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCC-C-------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPS-V-------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~-~-------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |.|+|+..+|=| +|+.++......+||+|.+..+..-.. .             +  .....+++++++.||||..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            889999999987 688888888899999998776543211 0             1  2335689999999999987655


Q ss_pred             CC--hhhh-----------hcchHHHHhcCCCCcEEEEcC---CC
Q 022233          230 LT--AETH-----------HMINKQVLSALGKEGVVINIG---RG  258 (300)
Q Consensus       230 ~~--~~t~-----------~li~~~~l~~mk~ga~lIn~s---rg  258 (300)
                      .+  ++.+           --+|.++++.-+++++|.-|-   ||
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG  275 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRG  275 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCC
Confidence            33  2221           346788888889999999883   65

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.21  E-value=0.25  Score=48.07  Aligned_cols=105  Identities=18%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCccc--CCHHHHhhcCCEEEEecCCChhhhh--
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFY--SNVCELAANCDILIICCGLTAETHH--  236 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~--~~l~e~l~~aDvV~l~~p~~~~t~~--  236 (300)
                      +.+++|.|+|+|..|.+.++.|+..|.+|.++|.......      +....  ....+.+...|+|+.. |.-+....  
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence            5688999999999999999999999999999996443210      11111  1122456678876664 32221111  


Q ss_pred             ---------cchH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          237 ---------MINK-QVLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       237 ---------li~~-~~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                               ++.+ +++.. ++...+-|-=+.|.---..-|...|+.
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                     2222 33333 233344455567777777777777765

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=92.20  E-value=0.35  Score=43.49  Aligned_cols=57  Identities=25%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             EEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCC-----Ccc--cCCHHHHhhcCCEEEEecC
Q 022233          173 GIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-----YPF--YSNVCELAANCDILIICCG  229 (300)
Q Consensus       173 gIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-----~~~--~~~l~e~l~~aDvV~l~~p  229 (300)
                      .|.| .|.||+.+++.|...|++|++.+|+......     ...  .....+.+.++|+|+.+..
T Consensus         2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            4565 6999999999999999999999887654321     000  1244567788999887764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=92.16  E-value=2.7  Score=42.38  Aligned_cols=138  Identities=19%  Similarity=0.214  Sum_probs=90.3

Q ss_pred             CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233          108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR  187 (300)
Q Consensus       108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~  187 (300)
                      .|.+.|..   -..+|-.+++-+|+.+|-.                          |..|...+|.|+|.|..|-.+|+.
T Consensus       289 ~i~~FnDD---iQGTaaV~lAgll~A~r~~--------------------------g~~l~d~riv~~GAGsAgigia~l  339 (581)
T PLN03129        289 THLCFNDD---IQGTAAVALAGLLAALRAT--------------------------GGDLADQRILFAGAGEAGTGIAEL  339 (581)
T ss_pred             CCCEeccc---cchHHHHHHHHHHHHHHHh--------------------------CCchhhceEEEECCCHHHHHHHHH
Confidence            45555553   2345666677677666521                          455888999999999999999999


Q ss_pred             HHh-----CCC-------EEEEECCCCC-----CC-C---------CCcccCCHHHHhhc--CCEEEEecCCChhhhhcc
Q 022233          188 LDA-----FGC-------SISYNSRTKK-----PS-V---------SYPFYSNVCELAAN--CDILIICCGLTAETHHMI  238 (300)
Q Consensus       188 l~~-----~g~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li  238 (300)
                      +..     .|.       +++.+|+..-     .. .         ......+|.|+++.  .|+++=.-    ..-++|
T Consensus       340 l~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~F  415 (581)
T PLN03129        340 IALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTF  415 (581)
T ss_pred             HHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCC
Confidence            886     466       6777776421     10 1         11123589999999  89887652    123678


Q ss_pred             hHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHhCC-ceEEE
Q 022233          239 NKQVLSALG---KEGVVINIGRGPI---IDEQELVRCLVQGE-IKGAG  279 (300)
Q Consensus       239 ~~~~l~~mk---~ga~lIn~srg~~---vd~~aL~~aL~~~~-i~~a~  279 (300)
                      +++.++.|.   +..+|.=.|...-   ...++.+++ .+|+ |.+.|
T Consensus       416 t~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtG  462 (581)
T PLN03129        416 TKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASG  462 (581)
T ss_pred             CHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeC
Confidence            999999995   7889998887652   233333333 3455 54443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.16  E-value=0.32  Score=42.84  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            67999999997 7999999999999999999888754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.14  E-value=0.43  Score=44.66  Aligned_cols=84  Identities=19%  Similarity=0.337  Sum_probs=53.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---c-C----CHHHHhh------cCC----EEE
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---Y-S----NVCELAA------NCD----ILI  225 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~-~----~l~e~l~------~aD----vV~  225 (300)
                      |.+|.|+|.|.||..+++.++..|.+|++.+++++..     .++..   . .    ++.+.+.      ..|    +|+
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~  246 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIF  246 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEE
Confidence            7899999999999999999999999998887754321     12110   0 0    1222222      233    666


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      -+......     ....++.+++|..++.++.
T Consensus       247 d~~g~~~~-----~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       247 ECSGSKPG-----QESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             ECCCChHH-----HHHHHHHHhcCCeEEEECc
Confidence            66543221     1335667888888888764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.13  E-value=0.56  Score=41.59  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.|+++.|+|. |.||+.+++.+...|++|.+.+++.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~   41 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP   41 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            67999999999 9999999999999999999888764

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=92.11  E-value=0.33  Score=45.18  Aligned_cols=62  Identities=19%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCC--CEEEEECCCCCCC---------CCC-------cccCCHHHHhhcCCEEEEe
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFG--CSISYNSRTKKPS---------VSY-------PFYSNVCELAANCDILIIC  227 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g--~~V~~~~~~~~~~---------~~~-------~~~~~l~e~l~~aDvV~l~  227 (300)
                      +.|++|.|.|. |.||+.+++.|.+.|  .+|.+++++....         ...       ....++.+++++.|+|+.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            46899999996 999999999999876  6888887654321         011       1123456678889988865


Q ss_pred             c
Q 022233          228 C  228 (300)
Q Consensus       228 ~  228 (300)
                      .
T Consensus        82 A   82 (324)
T TIGR03589        82 A   82 (324)
T ss_pred             c
Confidence            4

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=92.04  E-value=0.25  Score=47.85  Aligned_cols=64  Identities=27%  Similarity=0.364  Sum_probs=46.7

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CC-------cccCCHHHHhhcCCEEEEec
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SY-------PFYSNVCELAANCDILIICC  228 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~-------~~~~~l~e~l~~aDvV~l~~  228 (300)
                      ..++||++.|.|. |.||+++|+.|...|++|...+++.+...        ..       ....++.+.+.+.|+++.+.
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            3578999999997 89999999999999999988877543210        00       11123455678899998765

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=92.02  E-value=0.57  Score=43.18  Aligned_cols=62  Identities=24%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCcccCCHHHHhhcCCEEEE
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS---------V-----------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~-----------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      .|++|.|.| .|.||+.+++.|...|++|.+..|+....         .           ......+++++++.+|+|+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            478999999 69999999999999999998655443210         0           01112356778888998887


Q ss_pred             ecC
Q 022233          227 CCG  229 (300)
Q Consensus       227 ~~p  229 (300)
                      +..
T Consensus        84 ~A~   86 (322)
T PLN02986         84 TAS   86 (322)
T ss_pred             eCC
Confidence            664

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.02  E-value=0.34  Score=42.92  Aligned_cols=38  Identities=26%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++.|+++.|.| .|.||+.+|+.|...|++|.+.+++..
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            57899999999 578999999999999999988877643

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.00  E-value=0.83  Score=42.60  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~  204 (300)
                      .|.+++|+|+|.+|.+++.-+++.|. +|++.|.++++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            48999999999999999999999998 89999988764

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=91.99  E-value=0.17  Score=42.16  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=24.1

Q ss_pred             EEEEEecChhHHHHHHHHHh-CCCEEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDA-FGCSISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~-~g~~V~~~~  199 (300)
                      +|||-|||+||+.+++.+.. -.++|...+
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn   31 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN   31 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence            79999999999999999983 456776553

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.98  E-value=0.2  Score=48.48  Aligned_cols=31  Identities=29%  Similarity=0.475  Sum_probs=26.4

Q ss_pred             CEEEEEecChhHHHHHHHHHh-CCCEEEE-ECC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA-FGCSISY-NSR  200 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~~-~~~  200 (300)
                      .+|||.|||+||+.+++.+.. ++++|.. .|+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            499999999999999999875 7899876 453

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.98  E-value=0.49  Score=42.12  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=32.0

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCC
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      +.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            789999999986   79999999999999999888775

>PRK05717 oxidoreductase; Validated

Probab=91.97  E-value=0.41  Score=42.50  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+.||++.|.|. |.||+.+|+.|...|++|...+++.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            478999999996 8999999999999999999887754

>PRK06182 short chain dehydrogenase; Validated

Probab=91.96  E-value=2.1  Score=38.34  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .++++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999995 89999999999999999998887643

>PRK08862 short chain dehydrogenase; Provisional

Probab=91.94  E-value=0.23  Score=43.81  Aligned_cols=38  Identities=13%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +++|+++.|.|.+. ||+++|+.|...|++|...+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            36789999999876 999999999999999999888653

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.93  E-value=0.57  Score=45.75  Aligned_cols=31  Identities=29%  Similarity=0.483  Sum_probs=27.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC------EEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC------SISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~------~V~~~~~~  201 (300)
                      +|.|||.|.+|..+++.|...|.      +++++|..
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D   37 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence            58899999999999999999887      78888754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.93  E-value=0.86  Score=41.90  Aligned_cols=83  Identities=20%  Similarity=0.365  Sum_probs=55.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---c---CCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---Y---SNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~---~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |.+|.|+|.|.+|+.+++.++.+|.+|++.+++.+..     .+...   .   ..........|+++-++....     
T Consensus       163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-----  237 (330)
T cd08245         163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA-----  237 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH-----
Confidence            6799999999999999999999999998887665321     01110   0   011111235788887764322     


Q ss_pred             chHHHHhcCCCCcEEEEcC
Q 022233          238 INKQVLSALGKEGVVINIG  256 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~s  256 (300)
                      ...+.+..|+++..+|+++
T Consensus       238 ~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         238 AAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             HHHHHHHhcccCCEEEEEC
Confidence            2345677888888888875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=91.91  E-value=0.51  Score=50.77  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------------------CC--------ccc
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------------------SY--------PFY  211 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------------------~~--------~~~  211 (300)
                      .-+|++|+|||-|.-|-+.|..|-..|+.|++|.|+.+..-                          +.        ...
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            35799999999999999999999999999999988765310                          11        113


Q ss_pred             CCHHHHhhcCCEEEEecCCC
Q 022233          212 SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       212 ~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .+++++.+.-|.|++++-.|
T Consensus      1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ccHHHHhhccCeEEEEeCCC
Confidence            58999999999999987544

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.91  E-value=0.5  Score=44.55  Aligned_cols=85  Identities=28%  Similarity=0.332  Sum_probs=56.2

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcc---cC---CHHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPF---YS---NVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~---~~---~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+++.+.      ..++..   ..   .+.+.....|+++-++.....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            4779999999999999999999999988776654321      112211   11   122333457999888763222  


Q ss_pred             hcchHHHHhcCCCCcEEEEcCC
Q 022233          236 HMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~sr  257 (300)
                         ....+..++++..++.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHhccCCEEEEECC
Confidence               1345667888888888763

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.90  E-value=0.91  Score=40.06  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~   39 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA   39 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            56899999996 7999999999999999999988864

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=91.89  E-value=0.62  Score=44.96  Aligned_cols=91  Identities=11%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEec-----C---hhHHHHHHHHHhCCCEEEEECCCCC-C--C-----------CC--CcccCCHHHHhhcC
Q 022233          166 KLGGKRVGIVGL-----G---SIGSLVAKRLDAFGCSISYNSRTKK-P--S-----------VS--YPFYSNVCELAANC  221 (300)
Q Consensus       166 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~g~~V~~~~~~~~-~--~-----------~~--~~~~~~l~e~l~~a  221 (300)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..+..- .  .           .+  .....++++++++|
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   5668999999999999988776421 1  0           01  22357899999999


Q ss_pred             CEEEEecCC--------------Ch-----------------hhhhcchHHHHhcCCCC-cEEEEcC
Q 022233          222 DILIICCGL--------------TA-----------------ETHHMINKQVLSALGKE-GVVINIG  256 (300)
Q Consensus       222 DvV~l~~p~--------------~~-----------------~t~~li~~~~l~~mk~g-a~lIn~s  256 (300)
                      |+|..-.=.              .+                 -..--++++.++..+++ ++|.-+.
T Consensus       264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL  330 (395)
T PRK07200        264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL  330 (395)
T ss_pred             CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence            999885310              00                 01123577788888885 8888774

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.86  E-value=0.86  Score=39.48  Aligned_cols=38  Identities=34%  Similarity=0.447  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .+.|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            377999999986 99999999999999999999988654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.73  E-value=0.24  Score=45.23  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35899999999999999999999999995 78777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-62
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-41
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		6e-35
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-28
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-28
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-26
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		2e-25
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		6e-25
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		6e-25
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		8e-24
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		5e-22
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		9e-22
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-21
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		1e-21
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		1e-21
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-21
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-21
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-21
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		3e-21
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		3e-21
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		3e-21
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		6e-21
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		7e-21
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		7e-21
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		7e-21
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-20
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		3e-20
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-20
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		6e-20
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		7e-20
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		9e-20
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		4e-19
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		2e-17
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		6e-17
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		7e-17
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		8e-17
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		8e-16
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		4e-15
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		8e-15
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		8e-15
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		3e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		8e-13
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		9e-13
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		9e-13
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-12
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		3e-12
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		5e-12
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		1e-11
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-11
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-11
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		5e-11
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		6e-11
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		7e-11
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		1e-09
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		1e-09
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		1e-09
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		9e-09
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		7e-06
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		3e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 172/257 (66%), Gaps = 12/257 (4%)
Query: 39  NKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNH 98
            +FK  + W  P   D FL   A+S+ A++ +  A   AE +  +P + +V + S GL+ 
Sbjct: 42  KRFKLFRYWTQPAQRD-FLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDK 100
Query: 99  VDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEG 156
           VD+ +C  +G+ V N  +V ++DVADLA+GL++ +LR I   D++V++  W        G
Sbjct: 101 VDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAW------KFG 154
Query: 157 DCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCE 216
           D     + +K  GKRVGI+GLG IG  VA+R +AF C ISY SR+KKP+ +Y +Y +V E
Sbjct: 155 D---FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVE 211
Query: 217 LAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276
           LA+N DIL++ C LT ET H+IN++V+ ALG +GV+INIGRGP +DE ELV  LV+G + 
Sbjct: 212 LASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG 271
Query: 277 GAGLDVFENEPDVPKEL 293
           GAGLDVFE EP+VP++L
Sbjct: 272 GAGLDVFEREPEVPEKL 288

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 18/280 (6%)
Query: 17  PRVLLFKPPPDFHLFGDECFSSNKF-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPV 75
           P +LL +P   F    DE   +    +  +A + P      L+    S+ A+ + GGA +
Sbjct: 31  PDLLLVEPXXPF--VXDELQRNYSVHRLYQAADRPA-----LEAALPSIRAVATGGGAGL 83
Query: 76  TAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
           + E    +P++ ++     G + VD+A  RRR I V     V ++DVADL + L + +LR
Sbjct: 84  SNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLR 143
Query: 136 NISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
            +   DR V++  W      A G+   LG   K  GKR+G++GLG IG  +A R +AFG 
Sbjct: 144 RVGDGDRLVREGRW------AAGEQLPLGHSPK--GKRIGVLGLGQIGRALASRAEAFGX 195
Query: 194 SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI 253
           S+ Y +R+    V +  + +  +LA + D+L +C   +A T ++++  +L ALG EG+V+
Sbjct: 196 SVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVV 255
Query: 254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           N+ RG ++DE  L+  L  G I GAGLDVF NEP +  E 
Sbjct: 256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF 295

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 18/251 (7%)
Query: 52  PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           P  + LK      + I+ S    +T E L     ++++   SAG +++D+ E  +RGI V
Sbjct: 31  PSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYV 90
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYS-LGIGSK---- 166
                + SE VA+  VGL+I+L+R I  +D+F+++        E + ++ +  G K    
Sbjct: 91  TKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRR-------GEWESHAKIWTGFKRIES 143
Query: 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDI 223
           L GK+VGI+G+G+IG  +A+RL  FG  + Y SR +K +V       Y ++ EL    DI
Sbjct: 144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDI 203
Query: 224 LIICCGLTAETHHMINKQVLSALGKEG-VVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
           +I+   LT +T+H+IN++ +  L  EG  ++NIGRG ++DE+ +   + QG++KG   DV
Sbjct: 204 VILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDV 261
Query: 283 FENEPDVPKEL 293
           FE EP    EL
Sbjct: 262 FEKEPVREHEL 272

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 9/251 (3%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           E  +P +  LK   + V+A+++     +  E     P +R+V   + G +++DI E  +R
Sbjct: 31  EKEIPREILLK-KVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V N  +V ++  ADLA  LL+   R++   DRFV+  +W +   A     +   +G 
Sbjct: 90  GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF---LGY 146
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
            + GK +GI+GLG IG  +AKR   F   I Y SRT+K  V       +  + +L    D
Sbjct: 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESD 206
Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
            +++   LT ET+H+IN++ L  + K  ++INI RG ++D   LV+ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 283 FENEPDVPKEL 293
           FE EP   +EL
Sbjct: 267 FEEEPYYNEEL 277

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           E  +P +  LK   + V+A+++     +  E     P +R+V   + G +++DI E  +R
Sbjct: 31  EKEIPREILLK-KVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V N  +V ++  ADLA  LL+   R++   DRFV+  +W +   A     +   +G 
Sbjct: 90  GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF---LGY 146
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
            + GK +GI+GLG IG  +AKR   F   I Y SRT+K  V       +  + +L    D
Sbjct: 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESD 206
Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
            +++   LT ET+H+IN++ L    K  ++INI RG ++D   LV+ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 283 FENEPDVPKEL 293
           FE EP   +EL
Sbjct: 267 FEEEPYYNEEL 277

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 133/245 (54%), Gaps = 14/245 (5%)
Query: 52  PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           P +  L    + VEAI+      VT   +   P ++++     GL+++D+   + +GI V
Sbjct: 33  PDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEV 92
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
            NA    S  VA+LAVGL+  + R I+ +DR +++ +  ++ A        +G +L GK 
Sbjct: 93  VNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEA--------MGIELEGKT 144
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIIC 227
           +GI+G G IG  VAK  +A G +I     Y +  +   V+  F  ++  L    D++ I 
Sbjct: 145 IGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIH 203
Query: 228 CGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
             L   T+H+IN++ L  + K  ++IN  RGP++D   LV+ L +G I GAGLDVFE EP
Sbjct: 204 VPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP 263
Query: 288 DVPKE 292
            +PK+
Sbjct: 264 -LPKD 267

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
           ++++ T S G++H+ + E ++RGI V    +V ++  A+LAV LL+   R +  +   VK
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 136
Query: 146 Q--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTK 202
              W      +    +  G G  L    VGI+GLG IG  +A+RL  FG     Y  R  
Sbjct: 137 NGGW-----TSWKPLWLCGYG--LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 189
Query: 203 KPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259
           +P  +  F   + +  ELAA  D +++ C LT  T  + NK     + +  V INI RG 
Sbjct: 190 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGD 249
Query: 260 IIDEQELVRCLVQGEIKGAGLDVFENEP 287
           ++++ +L + L  G+I  AGLDV   EP
Sbjct: 250 VVNQDDLYQALASGKIAAAGLDVTSPEP 277

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 9/237 (3%)
Query: 57  LKTHAQSVEAILSSGGAPVTAETLR-LMPAVRLVMTTSAGLNHVDIAECRRRGITVANAG 115
           + + A   E +  +    +TAE +R L P ++ + T S G +H+D A  R  GI V +  
Sbjct: 65  IASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP 124
Query: 116 NVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV 175
           +V S+  A++A  L+++  R    +DR V+    P     G    LG G  L G+R+GI 
Sbjct: 125 DVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWP---GWGPTQLLGXG--LTGRRLGIF 179
Query: 176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---SYPFYSNVCELAANCDILIICCGLTA 232
           G G IG  +A R   FG +I Y++RT+          ++  +  L    DI +I      
Sbjct: 180 GXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP 239
Query: 233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
           E    ++   ++ + +  VVINI RG +I++  L+  L    +  AGLDVF NEP +
Sbjct: 240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAI 296

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK 145
           ++++ T S G++H+ + E ++RGI V    +V ++  A+LAV LL+   R +  +   VK
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 146 Q--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTK 202
              W      +    +  G G  L    VGI+GLG IG  +A+RL  FG     Y  R  
Sbjct: 135 NGGW-----TSWKPLWLCGYG--LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 187
Query: 203 KPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP 259
           +P  +  F   + +  ELAA  D +++ C LT  T  + NK       +  V INI RG 
Sbjct: 188 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGD 247
Query: 260 IIDEQELVRCLVQGEIKGAGLDVFENEP 287
           ++++ +L + L  G+I  AGLDV   EP
Sbjct: 248 VVNQDDLYQALASGKIAAAGLDVTSPEP 275

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 12/245 (4%)
Query: 51  LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGI 109
           + +D+ ++T A+SV+A+L +       E +  +P  ++ + T S G +H+D+  C+ RGI
Sbjct: 33  ITIDEMIET-AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGI 91
Query: 110 TVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGG 169
            V NA +  +   A++A+ LL+   R     ++ +    R R     +   L +G KL  
Sbjct: 92  KVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMI----RTRSWPGWEPLEL-VGEKLDN 146
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISY-----NSRTKKPSVSYPFYSNVCELAANCDIL 224
           K +GI G GSIG  +AKR   F   I Y      S + + S    F+ ++  L +     
Sbjct: 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFF 206
Query: 225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284
            +    T ET +  NK  + +L +  +V+N  RG ++D + +V  L  G +  AG DVF 
Sbjct: 207 SLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 266
Query: 285 NEPDV 289
            EP++
Sbjct: 267 GEPNI 271

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 127/271 (46%), Gaps = 16/271 (5%)
Query: 19  VLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAE 78
           VL    P +   F  E       K      S +P ++  K    SV          +T E
Sbjct: 3   VLFTSVPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVY-----DKLTEE 57
Query: 79  TLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNIS 138
            L   P ++L+ T S G +H+D+  C+++GI V +      E VA+     ++ L++ + 
Sbjct: 58  LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLK 117
Query: 139 ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN 198
             +  VK+ L   Q +E       +  +L    +G++G G IGS VA    AFG  +   
Sbjct: 118 RIEDRVKK-LNFSQDSEI------LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCY 170
Query: 199 SRTKKPSVSYP--FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV-VINI 255
              K+  +      Y+++ EL    D++ +    T ETHH IN++ +S L K+GV +IN 
Sbjct: 171 DVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERIS-LXKDGVYLINT 229
Query: 256 GRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
            RG ++D   L R   +G+  G GLDVFE+E
Sbjct: 230 ARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +T E L    A+R+++   +G +++DI      GI V N      E+ AD  +  +++L 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           R  +   + +++  R +   +    + G  +++ G+ +GI+GLG +G  VA R  AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           +     Y S   + ++     S + +L  + D + + CGL    HH+IN   +  + +  
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N  RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 62  QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSED 121
           Q  E ++      VTA+ +     +++V     G+++VD+    R+GI V N  N  S  
Sbjct: 66  QDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS 125
Query: 122 VADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
            A+L  G+++ L R I  +   +K  +W R +           +G++L GK +GI+GLG 
Sbjct: 126 AAELTCGMIMCLARQIPQATASMKDGKWERKK----------FMGTELNGKTLGILGLGR 175
Query: 180 IGSLVAKRLDAFGC-SISYNSRTKKPSVSYPFYSN---VCELAANCDILIICCGLTAETH 235
           IG  VA R+ +FG  +I Y+     P VS  F      + E+   CD + +   L   T 
Sbjct: 176 IGREVATRMQSFGMKTIGYDP-IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTT 234
Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N    +   K   V+N  RG I+DE  L+R L  G+  GA LDVF  EP
Sbjct: 235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +T E L    A+R+++   +G +++DI      GI V N      E+ AD  +  +++L 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           R  +   + +++  R +   +    + G  +++ G+ +GI+GLG +G  VA R  AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           +     Y S   + ++     S + +L  + D + + CGL    HH+IN   +  + +  
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N  RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 54  DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           D  L+ H    E I+S    P  +TAE +   P ++L +T   G +HVD+       ITV
Sbjct: 81  DSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITV 140
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
           A      S  VA+  V +++ L+RN   S      W R       DC  +     + G  
Sbjct: 141 AEVTYCNSNSVAEHVVMMVLGLVRNYIPS----HDWARNGGWNIADC--VARSYDVEGMH 194
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILII 226
           VG V  G IG  V + L  F   + Y  R + P      ++  +++   ++   CD++ +
Sbjct: 195 VGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTL 254
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
            C L  ET HMIN + L    +   ++N  RG + D   +VR L  G + G   DV+  +
Sbjct: 255 NCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQ 314
Query: 287 P 287
           P
Sbjct: 315 P 315

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 54  DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           D  L+ H    E I+S    P  +TAE +   P ++L +T   G +HVD+       ITV
Sbjct: 80  DSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITV 139
Query: 112 ANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR 171
           A      S  VA+  V +++ L+RN   S      W R       DC  +     + G  
Sbjct: 140 AEVTYCNSNSVAEHVVMMVLGLVRNYIPS----HDWARNGGWNIADC--VARSYDVEGMH 193
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILII 226
           VG V  G IG  V + L  F   + Y  R + P      ++  +++   ++   CD++ +
Sbjct: 194 VGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTL 253
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
            C L  ET HMIN + L    +   ++N  RG + D   +VR L  G + G   DV+  +
Sbjct: 254 NCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQ 313
Query: 287 P 287
           P
Sbjct: 314 P 314

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +T E L    A+R+++   +G +++DI      GI V N      E+ AD  +  +++L 
Sbjct: 75  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 134
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           R  +   + +++  R +   +    + G  +++ G+ +GI+GLG +G  VA R  AFG +
Sbjct: 135 RRATWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFN 193
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           +     Y S   + ++     S + +L  + D + + CGL    HH+IN   +  + +  
Sbjct: 194 VLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 253
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N  RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 254 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 290

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 57  LKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
           L+ H   +  ++S+   P  VTAE ++    ++L++T   G +H+D+      G+TVA  
Sbjct: 62  LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 121
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKR 171
                  VA+  +  ++ L+RN      FV  +    Q  +G+    GI  +   L GK 
Sbjct: 122 TGSNVVSVAEDELMRILILMRN------FVPGY---NQVVKGEWNVAGIAYRAYDLEGKT 172
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-----KPSVSYPFYSNVCELAANCDILII 226
           +G VG G IG L+ +RL  FGC++ Y+ R +     +      F  ++ E+   CD+++I
Sbjct: 173 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVI 232
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
              LT +T  M NK+++  L K  +++N  RG I++ Q +V  +  G I G   DV++ +
Sbjct: 233 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 292
Query: 287 PDVPKE 292
           P  PK+
Sbjct: 293 P-APKD 297

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 25/259 (9%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           +S L  ++ L+   +  +A+++     V A+ L+  P +R++     G ++ D+  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
           G+ +    ++ +   A+LA+GL + L R++ A+D FV+      W +PR           
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT---KKPSVSYPFYSNVC-ELA 218
            G+ L    VG +G+G+IG  +A RL  +G ++ Y++R     +           C EL 
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
           A+ D +++   L A+T H++N ++L+ +    +++N  RG ++DE  ++  L +G++ G 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
             DVFE E     D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 133/259 (51%), Gaps = 25/259 (9%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           +S L  ++ L+   +  +A+++     V A+ L+  P +R++     G ++ D+  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
           G+ +    ++ +   A+LA+GL + L R++ A+D FV+      W +PR           
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT---KKPSVSYPFYSNVC-ELA 218
            G+ L    VG +G+G+IG  +A RL  +G ++ Y++R     +           C EL 
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
           A+ D +++   L A+T H++N ++L+ +    +++N  RG ++DE  ++  L +G++ G 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
             DVFE E     D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 57  LKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
           L+ H   +  ++S+   P  VTAE ++    ++L++T   G +H+D+      G+TVA  
Sbjct: 56  LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 115
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK---LGGKR 171
                  VA+  +  ++ L+RN      FV  +    Q  +G+    GI  +   L GK 
Sbjct: 116 TGSNVVSVAEDELMRILILMRN------FVPGY---NQVVKGEWNVAGIAYRAYDLEGKT 166
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-----KPSVSYPFYSNVCELAANCDILII 226
           +G VG G IG L+ +RL  FGC++ Y+ R +     +      F  ++ E+   CD+++I
Sbjct: 167 IGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVI 226
Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
              LT +T  M NK+++  L K  +++N  RG I++ Q +V  +  G I G   DV++ +
Sbjct: 227 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286
Query: 287 PDVPKE 292
           P  PK+
Sbjct: 287 P-APKD 291

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 18/221 (8%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           + AE +     ++++   S G++HVD+   R RGI V +   V +E  ADL + LL+ + 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 135 RNIS-----ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
           R +      A D   K W  P      D   L +G          VG+G IG  VAKR  
Sbjct: 115 RRVVEGAAYARDGLWKAW-HPELLLGLDLQGLTLGL---------VGMGRIGQAVAKRAL 164
Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
           AFG  + Y++RT KP + YPF S + EL    D++ +   LT ETH ++N++ L A+ + 
Sbjct: 165 AFGMRVVYHARTPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222
Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
            +++N  RG ++D + LV  L +G + GAGLDV + EP  P
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPP 262

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 65  EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVAD 124
           +A+L      V AE L   P +++V     GL++VD+     RG+ V NA        A+
Sbjct: 46  DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 105
Query: 125 LAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
            A+ LL+   R I A+D  +++  W R         +S   G+++ GK VG+VGLG IG 
Sbjct: 106 HALALLLAASRQIPAADASLREHTWKR-------SSFS---GTEIFGKTVGVVGLGRIGQ 155
Query: 183 LVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238
           LVA+R+ AFG  +     Y S  +   +     S + +L A  D + +    T ET  +I
Sbjct: 156 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLI 214
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +K+ L+      +++N  RG ++DE  L   +  G ++ AGLDVF  EP
Sbjct: 215 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP 263

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 5/217 (2%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +T E L    A+R+++   +G +++DI      GI V N      E+ AD  +  +++L 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           R  +   + +++  R +   +    + G  +++ G+ +GI+GL  +G  VA R  AFG +
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLERVGQAVALRAKAFGFN 196
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           +     Y S   + ++     S + +L  + D + + CGL    HH+IN   +  + +  
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N  RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 65  EAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVAD 124
           +A+L      V AE L   P +++V     GL++VD+     RG+ V NA        A+
Sbjct: 45  DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 104
Query: 125 LAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
            A+ LL+   R I A+D  +++  W R         +S   G+++ GK VG+VGLG IG 
Sbjct: 105 HALALLLAASRQIPAADASLREHTWKR-------SSFS---GTEIFGKTVGVVGLGRIGQ 154
Query: 183 LVAKRLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMI 238
           LVA+R+ AFG  +     Y S  +   +     S + +L A  D + +    T ET  +I
Sbjct: 155 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLI 213
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           +K+ L+      +++N  RG ++DE  L   +  G ++ AGLDVF  EP
Sbjct: 214 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP 262

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           +S L  ++ L+   +  +A+++     V A+ L+  P +R++     G ++ D+  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
           G+ +    ++ +   A+LA+GL + L R++ A+D FV+      W +PR           
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN---SRTKKPSVSYPFYSNVC-ELA 218
            G+ L    VG +G+G+IG  +A RL  +G ++ Y+   +   +           C EL 
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
           A+ D +++   L A+T H++N ++L+ +    +++N  RG ++DE  ++  L +G++ G 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
             DVFE E     D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 132/259 (50%), Gaps = 25/259 (9%)
Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           +S L  ++ L+   +  +A+++     V A+ L+  P +R++     G ++ D+  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ-----WLRPRQAAEGDCYSLG 162
           G+ +    ++ +   A+LA+GL + L R++ A+D FV+      W +PR           
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW-QPR----------F 138
Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN---SRTKKPSVSYPFYSNVC-ELA 218
            G+ L    VG +G+G+IG  +A RL  +G ++ Y+   +   +           C EL 
Sbjct: 139 YGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELF 198
Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA 278
           A+ D +++   L A+T H++N ++L+ +    +++N  RG ++DE  ++  L +G++ G 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 279 GLDVFENE----PDVPKEL 293
             DVFE E     D P+++
Sbjct: 259 AADVFEMEDWARADRPQQI 277

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           A +T E +     ++L +T   G +HVD+     R +TVA      S  VA+  V +++ 
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           L+RN   S     +W R       DC S      L    VG V  G IG  V +RL  F 
Sbjct: 162 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 215
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
             + Y  R + P      ++  +++   ++   CD++ + C L  ET HMIN + L    
Sbjct: 216 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 275
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           +   ++N  RG + D   + R L  G + G   DV+  +P  PK+
Sbjct: 276 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           A +T E +     ++L +T   G +HVD+     R +TVA      S  VA+  V +++ 
Sbjct: 101 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           L+RN   S     +W R       DC S      L    VG V  G IG  V +RL  F 
Sbjct: 161 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 214
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
             + Y  R + P      ++  +++   ++   CD++ + C L  ET HMIN + L    
Sbjct: 215 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 274
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           +   ++N  RG + D   + R L  G + G   DV+  +P  PK+
Sbjct: 275 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 318

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           A +T E +     ++L +T   G +HVD+     R +TVA      S  VA+  V +++ 
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           L+RN   S     +W R       DC S      L    VG V  G IG  V +RL  F 
Sbjct: 162 LVRNYLPS----HEWARKGGWNIADCVSHAY--DLEAMHVGTVAAGRIGLAVLRRLAPFD 215
Query: 193 CSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
             + Y  R + P      ++  +++   ++   CD++ + C L  ET HMIN + L    
Sbjct: 216 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK 275
Query: 248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           +   ++N  RG + D   + R L  G + G   DV+  +P  PK+
Sbjct: 276 RGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 24/232 (10%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           V A+ L+  P +R++     G ++ D+  C  RG+ +    ++ +   A+LA+GL + L 
Sbjct: 58  VDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLG 117
Query: 135 RNISASDRFVKQ-----WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
           R++ A+D FV+      W +PR            G+ L    VG +G G+IG   A RL 
Sbjct: 118 RHLRAADAFVRSGQFRGW-QPR----------FYGTGLDNATVGFLGXGAIGLAXADRLQ 166
Query: 190 AFGCSISYNSRT---KKPSVSYPFYSNVC-ELAANCDILIICCGLTAETHHMINKQVLSA 245
            +G ++ Y++      +           C EL A+ D +++   L A+T H++N ++L+ 
Sbjct: 167 GWGATLQYHAAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLAL 226
Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE----PDVPKEL 293
           +    +++N  RG ++DE  ++  L +G++ G   DVFE E     D P+++
Sbjct: 227 VRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQI 278

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 5/217 (2%)
Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL 134
           +T E L    A+R+++   +G ++VDI      GI V N  +   E+ AD  +  +++L 
Sbjct: 59  LTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLY 118
Query: 135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           R  +   + +++  R +   +    + G  +++ G+ +G++G G  G  VA R  AFG S
Sbjct: 119 RRNTWLYQALREGTRVQSVEQIREVASG-AARIRGETLGLIGFGRTGQAVAVRAKAFGFS 177
Query: 195 I----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG 250
           +     Y     + S+       + +L    D + + C L    HH+IN   +  + +  
Sbjct: 178 VIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 237
Query: 251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            ++N  RG ++DE+ L + L +G I+GA LDV E+EP
Sbjct: 238 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEP 274

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 21/202 (10%)
Query: 93  SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQ 152
           S G N V++   R+RGI V NA    +  VA+L +G +I L+R I         + R   
Sbjct: 88  SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI---------FPRSVS 138
Query: 153 AAEGDCYSLGIGSK-LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFY 211
           A  G      IGS+ + GK +GIVG G+IGS V    ++ G ++ Y   + K       Y
Sbjct: 139 AHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----Y 193
Query: 212 SNVC------ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQE 265
            NV       EL    D++ +    +  T  +I +  L  + K   +IN  RG  +D + 
Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253
Query: 266 LVRCLVQGEIKGAGLDVFENEP 287
           L + L +G + GA +DVF  EP
Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEP 275

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 29/298 (9%)
Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQS----VEAILS--- 69
           PRVLL   P   HL  D+ +S  + KF     +    D F +   +      EAI+    
Sbjct: 4   PRVLLLGDPAR-HL--DDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAV 60
Query: 70  ---SGGAPVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADL 125
              +   P  A+ +  +P+ +++     AG + +D+     RG+  AN+        +DL
Sbjct: 61  ENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDL 120
Query: 126 AVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGS 182
           A+ L++ + R  S S+R      R       +   L IG      R   +G VGLG+I  
Sbjct: 121 ALYLILSVFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQK 176
Query: 183 LVAKR-LDAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETH 235
            +A++ +   G  + Y      ++ T+K ++      ++ ELA   D + +       TH
Sbjct: 177 EIARKAVHGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTH 235
Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           H+I++   +A+     ++N  RGP+I +  L+  L  G++  AGLDV E EP+V KEL
Sbjct: 236 HLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKEL 293

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 74  PVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           P  A+ +  +P+ +++     AG + +D+     RG+  AN+        +DLA+ L++ 
Sbjct: 68  PWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGSLVAKR-L 188
           + R  S S+R      R       +   L IG      R   +G VGLG+I   +A++ +
Sbjct: 128 VFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAV 183
Query: 189 DAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
              G  + Y      ++ T+K ++      ++ ELA   D + +       THH+I++  
Sbjct: 184 HGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAF 242
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
            +A+     ++N  RGP+I +  L+  L  G++  AGLDV E EP V KEL
Sbjct: 243 FAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKEL 293

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 74  PVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           P  A+ +  +P+ +++     AG + +D+     RG+  AN+        +DLA+ L++ 
Sbjct: 68  PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR---VGIVGLGSIGSLVAKR-L 188
           + R  S S+R      R       +   L IG      R   +G VGLG+I   +A++ +
Sbjct: 128 VFRLASYSERAA----RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAV 183
Query: 189 DAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
              G  + Y      ++ T+K ++      ++ ELA   D + +       THH+I++  
Sbjct: 184 HGLGMKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAF 242
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
            +A+     ++N  RGP+I +  L+  L  G++  AGLDV E EP V KEL
Sbjct: 243 FAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKEL 293

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 86  VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISAS---DR 142
           ++ V   SAG++++ +   +  G+ VAN   + ++ +++  +  ++ ++R   A+    R
Sbjct: 62  LKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQR 121
Query: 143 FVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK 202
             +QW  P              S L G+++ I G G IG  +A +  A G  +   + T 
Sbjct: 122 GARQWALPMTT-----------STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG 170
Query: 203 KPSVSYPFYSNVCELAANC-----DILIICCGLTAETHHMINKQVLSALGKEGVVINIGR 257
            P+    F+  V   A        + ++    LT  THH+ + ++     ++ ++INIGR
Sbjct: 171 HPADH--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGR 228
Query: 258 GPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           GP +D   L+  L   ++  A LDV E EP
Sbjct: 229 GPAVDTTALMTALDHHQLSMAALDVTEPEP 258

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 10/239 (4%)
Query: 53  LDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGIT 110
           LD+     A+  + I S    P  A     M A  ++ +   + G +++D+   ++ GI 
Sbjct: 34  LDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIR 93
Query: 111 VANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK 170
           ++N        +A+ A+   + LLRN+      V+  L   QA + +     IG +LG +
Sbjct: 94  LSNVPAYSPAAIAEFALTDTLYLLRNMGK----VQAQL---QAGDYEKAGTFIGKELGQQ 146
Query: 171 RVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
            VG++G G IG +  K    FG   I+Y+    K       Y ++ +L    D++ +   
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVP 206
Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
              +  H+IN+   + +    +VIN  R  +ID Q ++  L  G++ G G+D +E E +
Sbjct: 207 GIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETE 265

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 43  FLKAWESPLP------LDQFLKTH----AQSVEAILSSGGAPVTAETLRLMP--AVRLVM 90
           FLK WE           D+ L       A+  + ++        AETL+ +    +  + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 91  TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLR 149
             + G++++D+A+ +  G  + N        +A+ A      +LR   A D +  +  LR
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 150 PRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP 209
                    ++  IG ++  + VG+VG G IG +  + ++ FG  +      + P +   
Sbjct: 136 ---------WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK 186
Query: 210 FY--SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
            Y   ++ +L    D++ +         HMIN + ++ + ++ V++N+ RGP++D   ++
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 268 RCLVQGEIKGAGLDVFENE 286
           R L  G+I G  +DV+E E
Sbjct: 247 RGLDSGKIFGYAMDVYEGE 265

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 43  FLKAWESPLP------LDQFLKTH----AQSVEAILSSGGAPVTAETLRLMP--AVRLVM 90
           FLK WE           D+ L       A+  + ++        AETL+ +    +  + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 91  TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLR 149
             + G++++D+A+ +  G  + N        +A+ A      +LR   A D +  +  LR
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 150 PRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP 209
                    ++  IG ++  + VG+VG G IG +  + ++ FG  +      + P +   
Sbjct: 136 ---------WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK 186
Query: 210 FY--SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV 267
            Y   ++ +L    D++ +         HMIN + ++ + ++ V++N+ RGP++D   ++
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 268 RCLVQGEIKGAGLDVFENE 286
           R L  G+I G  +DV+E E
Sbjct: 247 RGLDSGKIFGYAMDVYEGE 265

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 22/255 (8%)
Query: 42  KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP------AVRLVMTTSAG 95
           + LKA  + LP  + L+   QS    L      + AE  R  P       +    +T AG
Sbjct: 20  RLLKA--AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAG 77
Query: 96  LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAE 155
           ++ +  A CRR    + N   +F   +++   G L+ L+R +       KQ L      +
Sbjct: 78  VDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQ 136
Query: 156 GDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNV- 214
           G          L G+ + I+G GSIG  +A     FG  +   SR+ +    +     + 
Sbjct: 137 G----------LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLP 186
Query: 215 --CELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
              ++ A  D+++     T ETHH+             ++ N+GRG  I+E +L+  L  
Sbjct: 187 ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT 246
Query: 273 GEIKGAGLDVFENEP 287
           G++  A LDVFE EP
Sbjct: 247 GKLGMAVLDVFEQEP 261

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N ++    ++  + V N        +A++ V   + LLR I           R R   
Sbjct: 80  GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGE--------FRYRMDH 131
Query: 155 EGDCY--SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF-- 210
           + D    S  I +++    VG++G+G IGS VA+   A G  +        P    PF  
Sbjct: 132 DHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLT 190
Query: 211 YSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCL 270
           Y++   +    DI+ +   L   T +MI ++ L  + K   +IN  RG ++D   L++ L
Sbjct: 191 YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL 250
Query: 271 VQGEIKGAGLDVFENE 286
             GEI GAGLD    E
Sbjct: 251 QDGEIAGAGLDTLAGE 266

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 54  DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           +  L  H    + I+++   P  +T E +     ++LV+    G +H+D+    + G  +
Sbjct: 52  NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKI 111
Query: 112 A----NAGNVFSEDVADLAVGLLIDLLRN-ISASDRFVKQ-WLRPRQAAEGDCYSLGIGS 165
           +       NV S  VA+  V  ++ L+RN + A ++ +   W     A   D Y +    
Sbjct: 112 SVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINHDW--EVAAIAKDAYDIE--- 164
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTK--KPSVSYPFYSNVCELAA 219
              GK +  +G G IG  V +RL  F         Y +  K  +  V      N+ EL A
Sbjct: 165 ---GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA 221
Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
             DI+ +   L A T  +INK++LS   K   ++N  RG I   +++   L  G+++G G
Sbjct: 222 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG 281
Query: 280 LDVFENEPDVPKE 292
            DV+  +P  PK+
Sbjct: 282 GDVWFPQP-APKD 293

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 54  DQFLKTHAQSVEAILSSGGAP--VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV 111
           +  L  H    + I+++   P  +T E +     ++LV+    G +H+D+    + G  +
Sbjct: 51  NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKI 110
Query: 112 A----NAGNVFSEDVADLAVGLLIDLLRN-ISASDRFVKQ-WLRPRQAAEGDCYSLGIGS 165
           +       NV S  VA+  V  ++ L+RN + A ++ +   W     A   D Y +    
Sbjct: 111 SVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINHDW--EVAAIAKDAYDIE--- 163
Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTK--KPSVSYPFYSNVCELAA 219
              GK +  +G G IG  V +RL  F         Y +  K  +  V      N+ EL A
Sbjct: 164 ---GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA 220
Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
             DI+ +   L A T  +INK++LS   K   ++N  RG I   +++   L  G+++G G
Sbjct: 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG 280
Query: 280 LDVFENEPDVPKE 292
            DV+  +P  PK+
Sbjct: 281 GDVWFPQP-APKD 292

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 14/266 (5%)
Query: 34  ECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEA-ILSSGGAPVTAETLRLMPAVRLVMTT 92
           +CFS  +   +K + + +     L      VEA +L      VT + L  +P ++++  T
Sbjct: 19  DCFSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQT 78
Query: 93  -----SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ- 146
                 AG  H+D+  C  +G+ V   G       A+L   L++   R I      +K  
Sbjct: 79  GRVSRDAG-GHIDLEACTDKGVVVLE-GKGSPVAPAELTWALVMAAQRRIPQYVASLKHG 136
Query: 147 -WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSI----SYNSRT 201
            W +    +     + GIG  L G+ +GI G G IG LVA    AFG ++      NS+ 
Sbjct: 137 AWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE 196
Query: 202 KKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII 261
           +  +  +    +   L    D+L +   L  ET  +I    L+ +    + +N  R  ++
Sbjct: 197 RARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELV 256
Query: 262 DEQELVRCLVQGEIKGAGLDVFENEP 287
           +E  +V  L +G    A +DVFE EP
Sbjct: 257 EENGMVTALNRGRPGMAAIDVFETEP 282

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA---NCDILIICC 228
           VGI G G +G+ VA+ L A+G  +   SR++K       Y    EL A      +LI   
Sbjct: 142 VGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLL 201
Query: 229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD 288
             TA+T  +IN ++L  L     V+N+ RG  + E +L+  L  G++KGA LDVF  EP 
Sbjct: 202 PNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP- 260
Query: 289 VPKE 292
           +P+E
Sbjct: 261 LPQE 264

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 26/229 (11%)
Query: 71  GGAPVTAETLRLMPAVRLVMTTSAGL-NHVDIAECRRRGITVANAGNVFSEDVADLAVGL 129
           G  P++AETL   PA+R ++   + L N+       +RGI V   G VF+E VA++ +G 
Sbjct: 82  GQPPLSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGF 141
Query: 130 LIDLLRNISASDRFVKQ----WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVA 185
            + L R I  +D   ++    W       EG+  +      + G  +GIVG G +G  + 
Sbjct: 142 ALALARGIVDADIAFQEGTELW-----GGEGNASA----RLIAGSEIGIVGFGDLGKALR 192
Query: 186 KRLDAFGCSISYNSRTKKPSVSYPFY-------SNVCELAANCDILIICCGLTAETHHMI 238
           + L  F   I    R   P +            +++ ++    D + +   +T+E    +
Sbjct: 193 RVLSGFRARI----RVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFL 248
Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
             +  S+  +    I + R  ++D   L   +  G I  A  DV+  EP
Sbjct: 249 GAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEEP 296

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 17/230 (7%)
Query: 67  ILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLA 126
           I+      VT + +     ++++     GL+++D  E  +R I V  A    ++   +L 
Sbjct: 50  IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 127 VGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186
           +GL+I   R +  S    K  +  +            G +L GK +GIVG G IG+ V  
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIFKKIE----------GLELAGKTIGIVGFGRIGTKVGI 159
Query: 187 RLDAFGCSI-SY---NSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
             +A G  + +Y   + R K   ++    S + EL  N D++ +   ++ +   +I+   
Sbjct: 160 IANAMGMKVLAYDILDIREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQ 218
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
              +    +++N  R   ++ + L+  + +G++     DVF NEP  PKE
Sbjct: 219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKE 266

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N VD+    +RGI V NA    +  VA+L +G L+ LLR +  ++          +A 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
            G    L  GS +  GK++GI+G G IG+ +    ++ G  +  Y+   K P  +     
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
           ++ +L    D++ +       T +M+  + +S +    ++IN  RG ++D   L   L  
Sbjct: 196 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 255
Query: 273 GEIKGAGLDVFENEP 287
             + GA +DVF  EP
Sbjct: 256 KHLAGAAIDVFPTEP 270

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N VD+    +RGI V NA    +  VA+L +G L+ LLR +  ++          +A 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
            G    L  GS +  GK++GI+G G IG+ +    ++ G  +  Y+   K P  +     
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
           ++ +L    D++ +       T +M+  + +S +    ++IN  RG ++D   L   L  
Sbjct: 196 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 255
Query: 273 GEIKGAGLDVFENEP 287
             + GA +DVF  EP
Sbjct: 256 KHLAGAAIDVFPTEP 270

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N VD+    +RGI V NA    +  VA+L +G L+ LLR +  ++          +A 
Sbjct: 84  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 134
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
            G    L  GS +  GK++GI+G G IG+ +    ++ G  +  Y+   K P  +     
Sbjct: 135 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQ 194
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
           ++ +L    D++ +       T +M+  + +S +    ++IN  RG ++D   L   L  
Sbjct: 195 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALAS 254
Query: 273 GEIKGAGLDVFENEP 287
             + GA +DVF  EP
Sbjct: 255 KHLAGAAIDVFPTEP 269

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 26/235 (11%)
Query: 55  QFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA 114
           Q L   A +++A+  +G   VT  +LR           + G++++D+ + +  G  + N 
Sbjct: 54  QQLDYTADTLQALADAG---VTKMSLR-----------NVGVDNIDMDKAKELGFQITNV 99
Query: 115 GNVFSEDVADLAVGLLIDLLRNISASD-RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG 173
                  +A+ A      +LR     D +  K+ LR         ++  IG ++  + VG
Sbjct: 100 PVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR---------WAPTIGREVRDQVVG 150
Query: 174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFY--SNVCELAANCDILIICCGLT 231
           +VG G IG +  + ++ FG  +      K P +    Y   ++ +L    D++ +     
Sbjct: 151 VVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210
Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
               HMIN + ++ +    V++N  RG ++D   ++R L  G+I G  +D +E+E
Sbjct: 211 PANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 50  PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGI 109
           P+P+++     A  V ++          E+L     +  V T +AG +HVD A  ++ GI
Sbjct: 32  PIPVEELNHADALXVRSVTK------VNESLLSGTPINFVGTATAGTDHVDEAWLKQAGI 85
Query: 110 TVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGG 169
             + A    +  V +     L+ L                    AE D +SL        
Sbjct: 86  GFSAAPGCNAIAVVEYVFSALLXL--------------------AERDGFSLR------D 119
Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCG 229
           + +GIVG+G++GS +  RL+A G         +        +  + EL    D+L     
Sbjct: 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTP 179
Query: 230 LTAE----THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
           L  +    T H+ ++ ++  L    ++IN  RGP++D   L+  L  G+     LDV+E 
Sbjct: 180 LYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEG 239
Query: 286 EPDV 289
           EPD+
Sbjct: 240 EPDL 243

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 12/233 (5%)
Query: 61  AQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVF 118
           A   +A++  G      + L +     V+ ++T +AG +H+D    +  G  +A      
Sbjct: 43  AAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYS 102
Query: 119 SEDVADLAVGLLIDLLRNIS-ASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177
              +A+LAV   + LLR+ +  + R  K+  +          +     ++    VG+VGL
Sbjct: 103 PNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVD--------AFMFSKEVRNCTVGVVGL 154
Query: 178 GSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHH 236
           G IG + A+     G + I  +    K    Y    ++ E+    DI+ I      E   
Sbjct: 155 GRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGA 214
Query: 237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
           ++ +  L  +    +++N  RG ++D + ++  +  G++ G G DV + E  V
Sbjct: 215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N VD+    +RGI V NA    +  VA+L +G L+ LLR +  ++          +A 
Sbjct: 79  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN---------AKAH 129
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
            G    L  GS +  GK++GI+G G IG+ +    ++ G  +  Y+   K P  +     
Sbjct: 130 RGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQ 189
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
           ++ +L    D++ +       T +    + +S      ++IN  RG ++D   L   L  
Sbjct: 190 HLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALAS 249
Query: 273 GEIKGAGLDVFENEP 287
             + GA +DVF  EP
Sbjct: 250 KHLAGAAIDVFPTEP 264

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 95  GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAA 154
           G N VD+    +RGI V NA    +  VA+L +G L+ LLR +  ++          +A 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA---------KAH 135
Query: 155 EGDCYSLGIGS-KLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYS 212
            G    L  GS +  GK++GI+G G IG+ +    ++ G  +  Y+   K P  +     
Sbjct: 136 RGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQ 195
Query: 213 NVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
           ++ +L    D++ +       T +    + +S      ++IN  RG ++D   L   L  
Sbjct: 196 HLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALAS 255
Query: 273 GEIKGAGLDVFENEP 287
             + GA +DVF  EP
Sbjct: 256 KHLAGAAIDVFPTEP 270

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 63  SVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDV 122
           +VEA L S    +TAE L   P ++ +   +AGL+H+   E     +TVA      ++ V
Sbjct: 31  NVEAALVS---RITAEELAKXPRLKFIQVVTAGLDHLPW-ESIPPHVTVAGNAGSNADAV 86
Query: 123 ADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGS 182
           A+ A+ LL+   +      R ++   + ++   G    + +   + G++V ++GLG IG+
Sbjct: 87  AEFALALLLAPYK------RIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGT 137
Query: 183 LVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
            V K L A G  +   SRT K    + F +++ E        +    L   T  ++  Q 
Sbjct: 138 RVGKILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQH 196
Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCL 270
           L+   ++ V +N+GR  ++D   ++R L
Sbjct: 197 LALXAEDAVFVNVGRAEVLDRDGVLRIL 224

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 11/219 (5%)
Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLID 132
           A V  +   L    + +   SAG++H+D+       +  +NAG  +S  VA+ A  LL+ 
Sbjct: 37  AQVIKDRYVLGKRTKXIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLA 95
Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
             +NI  ++   K  +  RQ+     Y         GK +GI+G G IG  VA    AFG
Sbjct: 96  HAKNILENNELXKAGIF-RQSPTTLLY---------GKALGILGYGGIGRRVAHLAKAFG 145
Query: 193 CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV 252
             +   +R+           +  +L    D ++I   LT +T   +N ++L+   K   +
Sbjct: 146 XRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTI 205
Query: 253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
           +N+ R  ++ + + +  L +        DV+ NEP++ +
Sbjct: 206 VNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE 244

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           T H++++  L+AL     ++N  RG ++D Q L R L  G      LDV+E EP    EL
Sbjct: 185 TRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-111
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-106
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	3e-86
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-77
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	6e-77
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-76
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	2e-76
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	4e-75
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	5e-72
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	4e-67
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-66
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	7e-65
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-62
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-61
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-59
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	4e-58
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-56
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	2e-56
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	6e-55
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	8e-55
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	9e-54
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-52
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	4e-51
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	5e-50
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	8e-49
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-46
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	5e-46
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-44
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	5e-44
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	7e-42
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-41
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-13
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	3e-05
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	1e-04
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	4e-04

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  324 bits (833), Expect = e-111
 Identities = 119/279 (42%), Positives = 174/279 (62%), Gaps = 16/279 (5%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVT 76
             VL+  P   +     +     +FK  + W  P     FL   A+S+ A++ +  A   
Sbjct: 24  IGVLMMCPMSTYLE---QELDK-RFKLFRYWTQPAQ-RDFLALQAESIRAVVGNSNAGAD 78

Query: 77  AETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN 136
           AE +  +P + +V + S GL+ VD+ +C  +G+ V N  +V ++DVADLA+GL++ +LR 
Sbjct: 79  AELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRR 138

Query: 137 ISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           I   D++V+   W               + +K  GKRVGI+GLG IG  VA+R +AF C 
Sbjct: 139 ICECDKYVRRGAWKFG---------DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCP 189

Query: 195 ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVIN 254
           ISY SR+KKP+ +Y +Y +V ELA+N DIL++ C LT ET H+IN++V+ ALG +GV+IN
Sbjct: 190 ISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLIN 249

Query: 255 IGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           IGRGP +DE ELV  LV+G + GAGLDVFE EP+VP++L
Sbjct: 250 IGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKL 288

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  312 bits (801), Expect = e-106
 Identities = 90/279 (32%), Positives = 149/279 (53%), Gaps = 16/279 (5%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVT 76
           P +LL +P   F            +   + +++       L+    S+ A+ + GGA ++
Sbjct: 31  PDLLLVEPMMPFV----MDELQRNYSVHRLYQAADR--PALEAALPSIRAVATGGGAGLS 84

Query: 77  AETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN 136
            E +  +P++ ++     G + VD+A  RRR I V     V ++DVADL + L++ +LR 
Sbjct: 85  NEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRR 144

Query: 137 ISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS 194
           +   DR V+  +W    Q        L +G    GKR+G++GLG IG  +A R +AFG S
Sbjct: 145 VGDGDRLVREGRWAAGEQ--------LPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 195 ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVIN 254
           + Y +R+    V +  + +  +LA + D+L +C   +A T ++++  +L ALG EG+V+N
Sbjct: 197 VRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVN 256

Query: 255 IGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           + RG ++DE  L+  L  G I GAGLDVF NEP +  E 
Sbjct: 257 VARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF 295

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  260 bits (668), Expect = 3e-86
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 21/289 (7%)

Query: 13  SQDLPRVLLFKPPPDFHLFGDECFSSNKFKF-LKAWESPLPLDQ-FLKTHAQSVEAILSS 70
           +  + +  L +             +  + +F L+       L    + + A   E +  +
Sbjct: 25  THPIQKAFLCRRFTP------AIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVT 78

Query: 71  GGAPVTAETL-RLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGL 129
               +TAE + +L P ++ + T S G +H+D+A  R  GI V +  +V S+  A++A+ L
Sbjct: 79  ATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLL 138

Query: 130 LIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187
           +++  R    +DR V+   W        G   +  +G  L G+R+GI G+G IG  +A R
Sbjct: 139 VLNACRRGYEADRMVRSGSW-------PGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 188 LDAFGCSISYNSRTKKPSVS---YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS 244
              FG +I Y++RT+          ++  +  L    DI +I      E    ++   ++
Sbjct: 192 ARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA 251

Query: 245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
            + +  VVINI RG +I++  L+  L    +  AGLDVF NEP +    
Sbjct: 252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRY 300

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  249 bits (639), Expect = 7e-82
 Identities = 87/251 (34%), Positives = 136/251 (54%), Gaps = 9/251 (3%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           E  +P +  LK   + V+A+++     +  E     P +R+V   + G +++DI E  +R
Sbjct: 31  EKEIPREILLK-KVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V N  +V ++  ADLA  LL+   R++   DRFV+  +W   ++          +G 
Sbjct: 90  GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEW---KKRGVAWHPKWFLGY 146

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCD 222
            + GK +GI+GLG IG  +AKR   F   I Y SRT+K  V       +  + +L    D
Sbjct: 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESD 206

Query: 223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV 282
            +++   LT ET+H+IN++ L  + K  ++INI RG ++D   LV+ L +G I GAGLDV
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266

Query: 283 FENEPDVPKEL 293
           FE EP   +EL
Sbjct: 267 FEEEPYYNEEL 277

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  236 bits (605), Expect = 3e-77
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 15/241 (6%)

Query: 54  DQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN 113
             F       +  + ++  + +TAE L  MP ++ +   +AGL+H+         +TVA 
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAG 77

Query: 114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKR 171
                ++ VA+ A+ LL+   + I      +K   + R  +              + G++
Sbjct: 78  NAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-----------IQGEK 126

Query: 172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLT 231
           V ++GLG IG+ V K L A G  +   SRT K    + F +++ E        +    L 
Sbjct: 127 VAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLN 185

Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
             T  ++  Q L+ + ++ V +N+GR  ++D   ++R L +        DV+    D  K
Sbjct: 186 KHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAK 245

Query: 292 E 292
           +
Sbjct: 246 D 246

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  237 bits (607), Expect = 6e-77
 Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 17/292 (5%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKF--KFLKAWESPLPLDQFLKTHAQSVEAILS----- 69
           PRVLL   P          F   KF                  +      EAI+      
Sbjct: 4   PRVLLLGDPARHLDDLWSDFQQ-KFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVEN 62

Query: 70  -SGGAPVTAETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAV 127
            +   P  A+ +  +P+ +++     AG + +D+     RG+  AN+        +DLA+
Sbjct: 63  GTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLAL 122

Query: 128 GLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR 187
            L++ + R  S S+R  +    P                  G  +G VGLG+I   +A++
Sbjct: 123 YLILSVFRLASYSERAART-GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181

Query: 188 -LDAFGCSISYNSRTKKP-----SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ 241
            +   G  + Y            ++      ++ ELA   D + +       THH+I++ 
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241

Query: 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             +A+     ++N  RGP+I +  L+  L  G++  AGLDV E EP V KEL
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKEL 293

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  235 bits (602), Expect = 1e-76
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 16/254 (6%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETL-RLMPAVRLVMTTSAGLNHVDIAECRR 106
           +  + +D+ ++  A+SV+A+L +       E + R+   ++ + T S G +H+D+  C+ 
Sbjct: 30  DPKITIDEMIE-TAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKA 88

Query: 107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIG 164
           RGI V NA +  +   A++A+ LL+   R     ++ ++   W        G      +G
Sbjct: 89  RGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSW-------PGWEPLELVG 141

Query: 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAA 219
            KL  K +GI G GSIG  +AKR   F   I Y    +  S         F+ ++  L +
Sbjct: 142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLS 201

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
                 +    T ET +  NK  + +L +  +V+N  RG ++D + +V  L  G +  AG
Sbjct: 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAG 261

Query: 280 LDVFENEPDVPKEL 293
            DVF  EP++ +  
Sbjct: 262 FDVFAGEPNINEGY 275

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  235 bits (601), Expect = 2e-76
 Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 13/245 (5%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
              LP  + LK   +    ++ +    + AE +     ++++   S G++HVD+   R R
Sbjct: 29  GLFLPKAELLK-RVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARER 87

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           GI V +   V +E  ADL + LL+ + R +     + +   W       +     L +G 
Sbjct: 88  GIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLW-------KAWHPELLLGL 140

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILI 225
            L G  +G+VG+G IG  VAKR  AFG  + Y++RT KP      + ++ EL    D++ 
Sbjct: 141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYP--FLSLEELLKEADVVS 198

Query: 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
           +   LT ETH ++N++ L A+ +  +++N  RG ++D + LV  L +G + GAGLDV + 
Sbjct: 199 LHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDP 257

Query: 286 EPDVP 290
           EP  P
Sbjct: 258 EPLPP 262

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  232 bits (593), Expect = 4e-75
 Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 15/247 (6%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETL-RLMPAVRLVMTTSAGLNHVDIAECRR 106
           + P+P  +  +        +L      V    L      ++++ T S G++H+ + E ++
Sbjct: 39  DEPIPAKELER-GVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKK 97

Query: 107 RGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIG 164
           RGI V    +V ++  A+LAV LL+   R +  +   VK   W                G
Sbjct: 98  RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGW-------TSWKPLWLCG 150

Query: 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSVSYPF---YSNVCELAAN 220
             L    VGI+GLG IG  +A+RL  FG     Y  R  +P  +  F   + +  ELAA 
Sbjct: 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQ 210

Query: 221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGL 280
            D +++ C LT  T  + NK     + +  V INI RG ++++ +L + L  G+I  AGL
Sbjct: 211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGL 270

Query: 281 DVFENEP 287
           DV   EP
Sbjct: 271 DVTSPEP 277

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  224 bits (573), Expect = 5e-72
 Identities = 61/251 (24%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 48  ESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRR 107
           +S L  ++ L+   +  +A+++     V A+ L+  P +R++     G ++ D+  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89

Query: 108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGS 165
           G+ +    ++ +   A+LA+GL + L R++ A+D FV+  ++   +            G+
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQ--------PRFYGT 141

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK-KPSVSYPF---YSNVCELAANC 221
            L    VG +G+G+IG  +A RL  +G ++ Y+                     EL A+ 
Sbjct: 142 GLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASS 201

Query: 222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD 281
           D +++   L A+T H++N ++L+ +    +++N  RG ++DE  ++  L +G++ G   D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261

Query: 282 VFENEPDVPKE 292
           VFE E     +
Sbjct: 262 VFEMEDWARAD 272

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  211 bits (540), Expect = 4e-67
 Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 10/242 (4%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           LK      + I+ S    +T E L     ++++   SAG +++D+ E  +RGI V     
Sbjct: 36  LKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG 95

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVK--QWLRPRQAAEGDCYSLGIGSKLGGKRVGI 174
           + SE VA+  VGL+I+L+R I  +D+F++  +W                   L GK+VGI
Sbjct: 96  LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA----KIWTGFKRIESLYGKKVGI 151

Query: 175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLT 231
           +G+G+IG  +A+RL  FG  + Y SR +K +V       Y ++ EL    DI+I+   LT
Sbjct: 152 LGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLT 211

Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
            +T+H+IN++ +    +   ++NIGRG ++DE+ +   + QG++KG   DVFE EP    
Sbjct: 212 RDTYHIINEERV-KKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREH 270

Query: 292 EL 293
           EL
Sbjct: 271 EL 272

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  210 bits (536), Expect = 1e-66
 Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 60  HAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFS 119
               +E +  +    +     R    ++ V   SAG++++ +   +  G+ VAN   + +
Sbjct: 37  DYDQIEVMYGNHPL-LKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHA 95

Query: 120 EDVADLAVGLLIDLLRNISASDRFVKQ---WLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176
           + +++  +  ++ ++R   A+    +    W  P   +            L G+++ I G
Sbjct: 96  DAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST-----------LTGQQLLIYG 144

Query: 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLTAE 233
            G IG  +A +  A G  +   + T  P+  +     ++   +  A  + ++    LT  
Sbjct: 145 TGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPT 204

Query: 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           THH+ + ++     ++ ++INIGRGP +D   L+  L   ++  A LDV E EP
Sbjct: 205 THHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  207 bits (530), Expect = 7e-65
 Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 20/286 (6%)

Query: 11  KESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAIL-- 68
           K     P  LL     +  L   +   SN    +   +   P   F +      + ++  
Sbjct: 40  KAIDFTPGQLLGSVSGELGL--RKYLESNGHTLVVTSDKDGPDSVFER-ELVDADVVISQ 96

Query: 69  SSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVG 128
               A +T E +     ++L +T   G +HVD+     R +TVA      S  VA+  V 
Sbjct: 97  PFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156

Query: 129 LLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186
           +++ L+RN   S  + ++  W                   L    VG V  G IG  V +
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCV--------SHAYDLEAMHVGTVAAGRIGLAVLR 208

Query: 187 RLDAFGCSISYNSRTKKP-----SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ 241
           RL  F   + Y  R + P      ++  +++   ++   CD++ + C L  ET HMIN +
Sbjct: 209 RLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDE 268

Query: 242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            L    +   ++N  RG + D   + R L  G + G   DV+  +P
Sbjct: 269 TLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 314

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  195 bits (497), Expect = 4e-61
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 15/221 (6%)

Query: 72  GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLI 131
            A V  +   L    +++   SAG++H+D+       +  +NAG  +S  VA+ A  LL+
Sbjct: 36  EAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLL 94

Query: 132 DLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
              +NI  ++  +K   + +               + L GK +GI+G G IG  VA    
Sbjct: 95  AHAKNILENNELMKAGIFRQ------------SPTTLLYGKALGILGYGGIGRRVAHLAK 142

Query: 190 AFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE 249
           AFG  +   +R+           +  +L    D ++I   LT +T  M+N ++L+   K 
Sbjct: 143 AFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKN 202

Query: 250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP 290
             ++N+ R  ++ + +++  L +        DV+ NEP++ 
Sbjct: 203 LTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEIT 243

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  192 bits (490), Expect = 2e-59
 Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 51  LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGIT 110
               +  +         L      +T E L    A+R+++   +G +++DI      GI 
Sbjct: 51  QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIA 110

Query: 111 VANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLG 168
           V N      E+ AD  +  +++L R  +   + +++   ++     E         +++ 
Sbjct: 111 VCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSV---EQIREVASGAARIR 167

Query: 169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDIL 224
           G+ +GI+GLG +G  VA R  AFG ++ +        V         S + +L  + D +
Sbjct: 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCV 227

Query: 225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE 284
            + CGL    HH+IN   +  + +   ++N  RG ++DE+ L + L +G I+GA LDV E
Sbjct: 228 TLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHE 287

Query: 285 NEPDVPKE 292
           +EP    +
Sbjct: 288 SEPFSFSQ 295

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  188 bits (480), Expect = 4e-58
 Identities = 58/279 (20%), Positives = 120/279 (43%), Gaps = 20/279 (7%)

Query: 18  RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTA 77
           ++  +    D   F  E   ++K   ++  +  L  +      A+  + ++        A
Sbjct: 3   KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPE--TVALAKGADGVVVYQQLDYIA 60

Query: 78  ETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
           ETL+ +    +  +   + G++++D+A+ +  G  + N        +A+ A      +LR
Sbjct: 61  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILR 120

Query: 136 NISASDRFVKQWLRPRQAAEGDCYSLG--IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC 193
              A D  V            D       IG ++  + VG+VG G IG +  + ++ FG 
Sbjct: 121 QDKAMDEKVA---------RHD-LRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA 170

Query: 194 SISYNSRTKKPSVSY--PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV 251
            +      + P +     +  ++ +L    D++ +         HMIN + ++ + K+ V
Sbjct: 171 KVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM-KQDV 229

Query: 252 V-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
           V +N+ RGP++D   ++R L  G+I G  +DV+E E  +
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGI 268

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  185 bits (472), Expect = 1e-56
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 22/251 (8%)

Query: 48  ESPLPLDQFLKTHAQSVEAIL--SSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECR 105
           +   P  +  K H   +  ++      A VTAE ++    ++L++T   G +H+D+    
Sbjct: 48  DKEGPDCELEK-HIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAA 106

Query: 106 RRGITVANA--GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSL 161
             G+TVA     NV S  VA+  +  ++ L+RN       V +  W     A        
Sbjct: 107 AAGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY------- 157

Query: 162 GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSYPFYSNVCE 216
                L GK +G VG G IG L+ +RL  FGC++ Y+ R +            F  ++ E
Sbjct: 158 -RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNE 216

Query: 217 LAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK 276
           +   CD+++I   LT +T  M NK+++  L K  +++N  RG I++ Q +V  +  G I 
Sbjct: 217 MLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG 276

Query: 277 GAGLDVFENEP 287
           G   DV++ +P
Sbjct: 277 GYSGDVWDPQP 287

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  185 bits (471), Expect = 2e-56
 Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 13/225 (5%)

Query: 74  PVTAETLRLMPAVRLVMTT----SAGLNHVDIAECRRRGITVANA-GNVFSEDVADLAVG 128
            VT + L  +P ++++  T         H+D+  C  +G+ V    G+  +   A+L   
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVA--PAELTWA 117

Query: 129 LLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAK 186
           L++   R I      +K   W +    +     + GIG  L G+ +GI G G IG LVA 
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177

Query: 187 RLDAFGCSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV 242
              AFG ++      NS+ +  +  +    +   L    D+L +   L  ET  +I    
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237

Query: 243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           L+ +    + +N  R  +++E  +V  L +G    A +DVFE EP
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP 282

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  180 bits (458), Expect = 6e-55
 Identities = 53/282 (18%), Positives = 113/282 (40%), Gaps = 26/282 (9%)

Query: 18  RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTA 77
           +VL +          + C     +  +K     L   +     A   +A++  G      
Sbjct: 2   KVLCYGVRDVELPIFEACNKEFGYD-IKCVPDYLNTKE-TAEMAAGFDAVILRGNCFANK 59

Query: 78  ETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
           + L +     V+ ++T +AG +H+D    +  G  +A         +A+LAV   + LLR
Sbjct: 60  QNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLR 119

Query: 136 NISASDRFVKQWLRPRQAAEGDCYSLG---IGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           + + +              + + + +       ++    VG+VGLG IG + A+     G
Sbjct: 120 HTAYTTSRTA---------KKN-FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMG 169

Query: 193 CSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248
            ++     +  +  +   +     ++ E+    DI+ I      E   ++ +  L  + K
Sbjct: 170 ATVIGEDVFEIKGIEDYCTQ---VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKM-K 225

Query: 249 EGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
           +G + +N  RG ++D + ++  +  G++ G G DV + E  V
Sbjct: 226 DGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  180 bits (458), Expect = 8e-55
 Identities = 60/282 (21%), Positives = 116/282 (41%), Gaps = 27/282 (9%)

Query: 18  RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTA 77
           +++ +    D   +  +         L+     L  +      A+  + I S    P  A
Sbjct: 2   KIIAYGARVDEIQYFKQWAKDTGNT-LEYHTEFLDEN--TVEWAKGFDGINSLQTTPYAA 58

Query: 78  ETLRLMPA--VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
                M A  ++ +   + G +++D+   ++ GI ++N        +A+ A+   + LLR
Sbjct: 59  GVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLR 118

Query: 136 NISASDRFVKQWLRPRQAAEGDCYSL---GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           N+      ++          GD Y      IG +LG + VG++G G IG +  K    FG
Sbjct: 119 NMGKVQAQLQ---------AGD-YEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFG 168

Query: 193 CSI----SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248
             +     Y  +   P   Y    ++ +L    D++ +      +  H+IN+   + + K
Sbjct: 169 AKVIAYDPYPMKGDHPDFDY---VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLM-K 224

Query: 249 EGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV 289
            G + IN  R  +ID Q ++  L  G++ G G+D +E E + 
Sbjct: 225 PGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETED 266

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  178 bits (453), Expect = 9e-54
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 25/253 (9%)

Query: 54  DQFLKTHAQSVEAIL--SSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRG--I 109
           +  L  H    + I+      A +T E +     ++LV+    G +H+D+    + G  I
Sbjct: 51  NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKI 110

Query: 110 TVANA--GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGS 165
           +V      NV S  VA+  V  ++ L+RN   +   +    W     A +          
Sbjct: 111 SVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDA--------Y 160

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKP-----SVSYPFYSNVCELAA 219
            + GK +  +G G IG  V +RL  F    + Y      P      V      N+ EL A
Sbjct: 161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVA 220

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG 279
             DI+ +   L A T  +INK++LS   K   ++N  RG I   +++   L  G+++G G
Sbjct: 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG 280

Query: 280 LDVFENEPDVPKE 292
            DV+  +P  PK+
Sbjct: 281 GDVWFPQP-APKD 292

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  173 bits (441), Expect = 1e-52
 Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 19/238 (7%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA-- 114
           L    + VEAI+      VT   +   P ++++     GL+++D+   + +GI V NA  
Sbjct: 38  LVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA 97

Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRV 172
            +  S  VA+LAVGL+  + R I+ +DR +++  W +             +G +L GK +
Sbjct: 98  ASSRS--VAELAVGLMFSVARKIAFADRKMREGVWAK----------KEAMGIELEGKTI 145

Query: 173 GIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCG 229
           GI+G G IG  VAK  +A G +I           +      + ++  L    D++ I   
Sbjct: 146 GIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVP 205

Query: 230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           L   T+H+IN++ L  + K  ++IN  RGP++D   LV+ L +G I GAGLDVFE EP
Sbjct: 206 LVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP 263

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  170 bits (432), Expect = 4e-51
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 22/234 (9%)

Query: 60  HAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFS 119
                  ++           L     +    +T AG++ + +    RR   + N   +F 
Sbjct: 44  LIGEAHILM--AEPARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFG 100

Query: 120 EDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL 177
             +++   G L+ L+R +       KQ  W                   L G+ + I+G 
Sbjct: 101 PLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG------------LKGRTLLILGT 148

Query: 178 GSIGSLVAKRLDAFGCSISYNSRTKKP----SVSYPFYSNVCELAANCDILIICCGLTAE 233
           GSIG  +A     FG  +   SR+ +        Y     + ++ A  D+++     T E
Sbjct: 149 GSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL-PALNKMLAQADVIVSVLPATRE 207

Query: 234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           THH+             ++ N+GRG  I+E +L+  L  G++  A LDVFE EP
Sbjct: 208 THHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP 261

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  172 bits (437), Expect = 5e-50
 Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 25/247 (10%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA-- 114
           L       +A+L      V AE L   P +++V     GL++VD+     RG+ V NA  
Sbjct: 38  LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPT 97

Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRV 172
            N+ S   A+ A+ LL+   R I A+D  +++  W R          S   G+++ GK V
Sbjct: 98  SNIHS--AAEHALALLLAASRQIPAADASLREHTWKR----------SSFSGTEIFGKTV 145

Query: 173 GIVGLGSIGSLVAKRLDAFGCSISYN------SRTKKPSVSYPFYSNVCELAANCDILII 226
           G+VGLG IG LVA+R+ AFG  +         +R  +  +      ++ +L A  D + +
Sbjct: 146 GVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL---LSLDDLLARADFISV 202

Query: 227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE 286
               T ET  +I+K+ L+      +++N  RG ++DE  L   +  G ++ AGLDVF  E
Sbjct: 203 HLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATE 262

Query: 287 PDVPKEL 293
           P     L
Sbjct: 263 PCTDSPL 269

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  164 bits (417), Expect = 8e-49
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 27/242 (11%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA-- 114
           L    Q  E ++      VTA+ +     +++V     G+++VD+    R+GI V N   
Sbjct: 61  LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN 120

Query: 115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRV 172
           GN  S   A+L  G+++ L R I  +   +K   W R             +G++L GK +
Sbjct: 121 GNSLS--AAELTCGMIMCLARQIPQATASMKDGKWER----------KKFMGTELNGKTL 168

Query: 173 GIVGLGSIGSLVAKRLDAFGCSISY------NSRTKKPSVSYPFYSNVCELAANCDILII 226
           GI+GLG IG  VA R+ +FG              +    V       + E+   CD + +
Sbjct: 169 GILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQ---LPLEEIWPLCDFITV 225

Query: 227 CCGLTAETHHMINKQVLSALGKEGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN 285
              L   T  ++N     A  K+GV V+N  RG I+DE  L+R L  G+  GA LDVF  
Sbjct: 226 HTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTE 284

Query: 286 EP 287
           EP
Sbjct: 285 EP 286

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  158 bits (401), Expect = 1e-46
 Identities = 52/252 (20%), Positives = 106/252 (42%), Gaps = 30/252 (11%)

Query: 47  WESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRR 106
           +   +  ++ L     + + I+      VT + +     ++++     GL+++D  E  +
Sbjct: 31  YMPEISKEE-LLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEK 89

Query: 107 RGITVANA--GNVFSEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLG 162
           R I V  A   +  S    +L +GL+I   R +  S    K   + +             
Sbjct: 90  RNIKVVYAPGASTDS--AVELTIGLMIAAARKMYTSMALAKSGIFKK------------I 135

Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY------NSRTKKPSVSYPFYSNVCE 216
            G +L GK +GIVG G IG+ V    +A G  +          + +K +       ++ E
Sbjct: 136 EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKA---VSLEE 192

Query: 217 LAANCDILIICCGLTAETHHMINKQVLSALGKEGV-VINIGRGPIIDEQELVRCLVQGEI 275
           L  N D++ +   ++ +   +I+      + K+ V ++N  R   ++ + L+  + +G++
Sbjct: 193 LLKNSDVISLHVTVSKDAKPIIDYPQFELM-KDNVIIVNTSRAVAVNGKALLDYIKKGKV 251

Query: 276 KGAGLDVFENEP 287
                DVF NEP
Sbjct: 252 YAYATDVFWNEP 263

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  158 bits (401), Expect = 5e-46
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 35/225 (15%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLID 132
           V    L   P +  V T +AG +HVD A  ++ GI  + A   N  +  V +     L+ 
Sbjct: 52  VNESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLM 108

Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           L                              G  L  + +GIVG+G++GS +  RL+A G
Sbjct: 109 LAERD--------------------------GFSLRDRTIGIVGVGNVGSRLQTRLEALG 142

Query: 193 CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGK 248
                    +        +  + EL    D+L     L  +    T H+ ++ ++  L  
Sbjct: 143 IRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKP 202

Query: 249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
             ++IN  RGP++D   L+  L  G+     LDV+E EPD+   L
Sbjct: 203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVAL 247

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  153 bits (389), Expect = 3e-44
 Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 41/228 (17%)

Query: 75  VTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLID 132
           V+   L   P VR V T + G +H+D+      GI  ++A   N     V D  +G L+ 
Sbjct: 49  VSRAALAGSP-VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLLA 105

Query: 133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
           +                              G+ L  +  G+VG G +G  + + L   G
Sbjct: 106 MAEVR--------------------------GADLAERTYGVVGAGQVGGRLVEVLRGLG 139

Query: 193 CSISYN---SRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSA 245
             +       + ++P   +    ++  L A  D++ +   L  +    T H++++  L+A
Sbjct: 140 WKVLVCDPPRQAREPDGEF---VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAA 196

Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           L     ++N  RG ++D Q L R L  G      LDV+E EP    EL
Sbjct: 197 LRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL 244

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  151 bits (384), Expect = 5e-44
 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 29/222 (13%)

Query: 80  LRLMPAVRLVMTTSAGLNHV-----DIAECRRRGITVANA-GNVFSEDVADLAVGLLIDL 133
           +     ++ V    AG++ +        E     I +           + + AV  ++  
Sbjct: 54  MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113

Query: 134 LRNISASDRFVKQ-----WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL 188
            R     D +        W    +                   VGI+G G +G+ VA+ L
Sbjct: 114 FRRF---DDYQALKNQALWKPLPE------------YTREEFSVGIMGAGVLGAKVAESL 158

Query: 189 DAFGCSISYNSRTKKPSVSYPFYSNVCELA---ANCDILIICCGLTAETHHMINKQVLSA 245
            A+G  +   SR++K       Y    EL        +LI     TA+T  +IN ++L  
Sbjct: 159 QAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQ 218

Query: 246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           L     V+N+ RG  + E +L+  L  G++KGA LDVF  EP
Sbjct: 219 LPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP 260

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  148 bits (375), Expect = 7e-42
 Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 23/280 (8%)

Query: 14  QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGA 73
           +D  + LL +     H    E   +  +  ++  +  L  +Q LK   +    I      
Sbjct: 2   KDKIKFLLVEG---VHQKALESLRAAGYTNIEFHKGALDDEQ-LKESIRDAHFIGLRSRT 57

Query: 74  PVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLLI 131
            +T + +     +  +   + G N VD+    +RGI V NA   N  S  VA+L +G L+
Sbjct: 58  HLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELL 115

Query: 132 DLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLD 189
            LLR +  ++    +    +                +  GK++GI+G G IG+ +    +
Sbjct: 116 LLLRGVPEANAKAHRGVGNK----------LAAGSFEARGKKLGIIGYGHIGTQLGILAE 165

Query: 190 AFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK 248
           + G     Y+   K P  +     ++ +L    D++ +       T +M+  + +S + K
Sbjct: 166 SLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM-K 224

Query: 249 EGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            G  +IN  RG ++D   L   L    + GA +DVF  EP
Sbjct: 225 PGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEP 264

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  147 bits (373), Expect = 1e-41
 Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 23/281 (8%)

Query: 13  SQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGG 72
           S+D   VLL +          E F S+ +  +      L     L     S   I     
Sbjct: 12  SRDRINVLLLEG---ISQTAVEYFKSSGYTNVTHLPKALDKAD-LIKAISSAHIIGIRSR 67

Query: 73  APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA--GNVFSEDVADLAVGLL 130
             +T E       +  V   S G N V++   R+RGI V NA   N  S  VA+L +G +
Sbjct: 68  TQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEI 125

Query: 131 IDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRL 188
           I L+R I           W +          +     ++ GK +GIVG G+IGS V    
Sbjct: 126 IMLMRRIFPRSVSAHAGGWEK----------TAIGSREVRGKTLGIVGYGNIGSQVGNLA 175

Query: 189 DAFGCS-ISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG 247
           ++ G +   Y++  K    +    +++ EL    D++ +    +  T  +I +  L  + 
Sbjct: 176 ESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKM- 234

Query: 248 KEGV-VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
           K+G  +IN  RG  +D + L + L +G + GA +DVF  EP
Sbjct: 235 KKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEP 275

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYPFYSNVCELAA 219
           + G  V ++GLG +G  VA++  A G  +   +R            +     S   +   
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268
           + D+ I           ++   VL+ +     VI++   P   +     
Sbjct: 213 DVDVCI-----NTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAE 256

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT--------KKPSVSYPFYSNV 214
           I  K GG ++ +VG G + S +A         ++   R         +K    Y   +++
Sbjct: 15  IVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDI 74

Query: 215 CELAANCDILIICCGLTAETHHMINKQVL 243
             L  N D++I     T+    ++ ++ L
Sbjct: 75  DSLIKNNDVIITA---TSSKTPIVEERSL 100

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 171 RVGIVGLGSIGSLVAKRLDAFGCSIS--YNSRTKKPSVSYPFYSNVCELAANCDILIICC 228
            VG++G G+IG  +A+ L+  G  I+   + R +   +          L    D+ +   
Sbjct: 2   LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDE---FLQREMDVAVEAA 58

Query: 229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ 272
               +      +++L A G + +V++ G     D    VR + +
Sbjct: 59  S--QQAVKDYAEKILKA-GIDLIVLSTGAFADRDFLSRVREVCR 99

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Length = 253

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGL 230
            V I+G+G+IG  + +  +              P V      +  ++ ++   ++ C   
Sbjct: 14  TVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVV---RLDEFQVPSDVSTVVECAS- 69

Query: 231 TAETHHMINKQVLSALGKEGVVINIG 256
             E     + Q+L       ++I+  
Sbjct: 70  -PEAVKEYSLQILKN-PVNYIIISTS 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.96
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.96
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.83
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.82
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.76
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.71
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.69
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.64
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.6
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.58
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.55
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.55
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.45
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.45
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.44
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.44
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.43
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.43
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.42
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.4
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.36
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.33
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.32
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.3
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.29
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.26
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.23
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.23
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.22
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.21
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.2
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.2
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.19
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.18
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.16
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.16
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.16
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.15
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.14
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.14
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.13
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.12
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.11
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.1
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.08
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.05
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.04
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.04
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.61
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.03
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.03
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.98
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.98
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.96
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.95
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.94
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.94
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.91
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.9
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.89
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.86
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.86
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.86
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.85
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.84
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.83
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.8
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.8
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.79
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.78
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.76
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.75
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.71
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.71
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.7
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.68
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.67
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.64
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.64
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.64
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.63
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.63
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.61
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.61
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.6
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.58
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.57
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.57
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.56
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.55
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.54
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.53
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.53
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.52
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.52
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.52
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.51
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.51
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.5
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.49
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.44
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.43
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.42
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.34
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.32
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.31
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.3
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.27
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.27
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.24
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.23
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.22
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.2
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.18
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.16
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.15
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.13
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.12
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.12
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.07
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.04
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.04
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.98
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.98
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.97
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.97
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.92
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.9
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.89
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.88
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.87
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.86
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.84
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.83
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.83
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.81
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.81
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.79
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.77
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.75
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.75
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.75
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.74
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.73
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.73
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.73
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.72
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.71
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.7
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.7
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.7
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.7
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.69
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.68
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.66
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.65
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.62
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.62
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.59
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.59
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.59
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.57
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.57
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.56
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.54
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.54
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.54
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.53
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.52
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.52
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.5
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.5
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.48
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.47
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.46
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.46
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.43
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.4
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.39
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.39
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.35
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.34
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.33
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.33
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.33
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.32
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.3
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.28
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.28
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.28
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.22
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.2
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.19
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.17
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.17
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.16
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.16
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.15
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.14
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.13
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.13
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.12
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.12
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.11
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.1
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.09
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.07
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.06
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.06
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.05
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.01
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.98
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.97
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.97
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.97
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.96
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.95
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.95
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.95
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.93
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.93
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.92
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.91
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.91
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.89
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.89
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.88
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.87
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.83
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.82
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.81
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.81
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.8
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.8
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.79
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.78
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.78
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.77
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.77
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.76
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.74
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.73
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.72
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.72
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.72
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.7
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.7
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.69
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.68
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.65
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.65
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.63
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.63
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.63
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.63
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.62
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.58
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.58
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.57
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.57
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.53
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.51
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.5
4had_A	350	Probable oxidoreductase protein; structural genomi	96.5
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.5
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.49
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.49
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.47
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.44
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.43
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.41
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.37
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.36
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.35
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.34
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.32
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.32
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.3
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.29
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.29
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.28
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.28
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.27
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.27
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.27
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.26
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.25
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.25
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.25
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.24
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.24
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.22
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.22
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.17
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.16
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.16
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.14
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.12
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.11
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.11
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.11
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.07
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.06
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.04
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.03
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.03
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.01
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.99
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.97
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.95
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.94
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.94
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.91
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.91
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.9
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.89
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.88
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.86
2csu_A	457	457AA long hypothetical protein; structural genomi	95.86
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.86
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.85
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.85
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.83
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.83
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.81
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.81
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.81
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.81
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.79
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.79
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.78
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.75
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.75
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.74
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.73
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.72
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.72
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.71
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.7
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.7
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.69
3on5_A	362	BH1974 protein; structural genomics, joint center	95.67
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.66
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.65
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.64
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.63
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.62
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.62
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.62
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.61
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.6
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.6
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.59
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.59
1lnq_A	336	MTHK channels, potassium channel related protein;	95.58
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.57
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.57
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.57
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.55
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.55
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.52
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.51
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.49
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.49
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.48
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.44
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.44
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.44
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.44
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.42
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.42
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.41
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.4
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.39
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.37
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.37
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.35
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.35
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.35
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.33
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.33
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.32
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.32
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.31
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.29
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.29
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.28
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.26
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.24
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.24
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.21
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.21
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.19
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.18
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.15
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.15
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.14
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.13
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.13
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.08
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.04
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.02
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.01
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.97
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.96
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.95
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.93
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	94.92
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.91
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.89
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.89
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.84
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.83
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.82
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.79
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.76
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.73
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.72
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	94.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.65
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.64
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	94.62
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.61
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.61
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	94.59
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	94.58
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	94.53
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	94.53
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.52
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.49
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	94.48
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.47
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	94.41
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.41
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.36
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.35
1spx_A	278	Short-chain reductase family member (5L265); paral	94.35

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=4.8e-64  Score=469.79  Aligned_cols=278  Identities=27%  Similarity=0.464  Sum_probs=243.2

Q ss_pred             CCCCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccC-CCcceEE
Q 022233           13 SQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLM-PAVRLVM   90 (300)
Q Consensus        13 ~~~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~-p~Lk~I~   90 (300)
                      .++|||||++.++  .++..+.  |++.|++...... ..+.++ +.+.++++|++++++..++++++++++ |+||+|+
T Consensus        25 ~~~~~kvlv~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~-l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~   99 (345)
T 4g2n_A           25 THPIQKAFLCRRF--TPAIEAE--LRQRFDLEVNLEDTVLTPSG-IASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIA   99 (345)
T ss_dssp             --CCCEEEESSCC--CHHHHHH--HHHHSEEEECTTCCCCCHHH-HHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEE
T ss_pred             cCCCCEEEEeCCC--CHHHHHH--HHccCCEEEecCCCCCCHHH-HHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEE
Confidence            4679999999987  5666666  8888987653322 233444 445568999999987789999999997 7999999


Q ss_pred             EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCC
Q 022233           91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK  170 (300)
Q Consensus        91 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~  170 (300)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|...... .  ..  |.+|+|+
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~-~--~~--g~~l~gk  174 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPT-Q--LL--GMGLTGR  174 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTT-T--TC--BCCCTTC
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcc-c--cc--ccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999732111 1  23  7899999


Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      ||||||+|+||+.+|+++++|||+|++||+++...   .+.....++++++++||+|++|+|++++|+++|+++.|+.||
T Consensus       175 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk  254 (345)
T 4g2n_A          175 RLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIP  254 (345)
T ss_dssp             EEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSC
T ss_pred             EEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999999999986431   244445699999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|++|||+|||++||++||+++|++|+|+||+||||++||.+++|||++|||+
T Consensus       255 ~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvi  307 (345)
T 4g2n_A          255 EGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIF  307 (345)
T ss_dssp             TTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEE
T ss_pred             CCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEE
Confidence            99999999999999999999999999999999999999995567999999985

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.3e-64  Score=472.84  Aligned_cols=275  Identities=32%  Similarity=0.595  Sum_probs=218.3

Q ss_pred             CCCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           14 QDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        14 ~~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      +|||+||++.++  .++..+.  |++.|++..+. ...+.++++.+. +++|++++++..++++++++++|+||+|++.|
T Consensus        28 ~~~~~vl~~~~~--~~~~~~~--L~~~~~v~~~~-~~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g  101 (340)
T 4dgs_A           28 NVKPDLLLVEPM--MPFVMDE--LQRNYSVHRLY-QAADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAING  101 (340)
T ss_dssp             -----CEECSCC--CHHHHHT--HHHHSCCEETT-CGGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEES
T ss_pred             CCCCEEEEECCC--CHHHHHH--HhcCCcEEEeC-CCCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEECC
Confidence            579999999997  5777766  88889876532 222345566655 79999999888899999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+|+||+++|+++||.|+|+|++++.+|||+++++||++.|+++.+++.+++|.|..   ...+ +.  |.+|+|+|||
T Consensus       102 ~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~-~~--~~~l~gktiG  175 (340)
T 4dgs_A          102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAA---GEQL-PL--GHSPKGKRIG  175 (340)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC----------CC--CCCCTTCEEE
T ss_pred             CCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccc---ccCc-Cc--cccccCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999972   1123 34  7899999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI  253 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI  253 (300)
                      |||+|+||+.+|+++++|||+|++|++++....+.....+++|++++||+|++|+|++++|+++++++.++.||+|++||
T Consensus       176 IIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailI  255 (340)
T 4dgs_A          176 VLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVV  255 (340)
T ss_dssp             EECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEE
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEE
Confidence            99999999999999999999999999987765555556799999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      |+|||+++|+++|+++|++|+|+||+||||++||++++|||++|||+
T Consensus       256 N~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvi  302 (340)
T 4dgs_A          256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTV  302 (340)
T ss_dssp             ECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEE
T ss_pred             ECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEE
Confidence            99999999999999999999999999999999999888999999984

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=3e-61  Score=449.23  Aligned_cols=274  Identities=23%  Similarity=0.412  Sum_probs=240.9

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      ||||||++.+.  .++..+.  |++.++++..... ..+.+++ .+.++++|++++++..++++++++++|+||+|++.|
T Consensus         1 m~~kvlv~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~   75 (330)
T 4e5n_A            1 MLPKLVITHRV--HEEILQL--LAPHCELITNQTDSTLTREEI-LRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCAL   75 (330)
T ss_dssp             CCCEEEECSCC--CHHHHHH--HTTTCEEECCCSSSCCCHHHH-HHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESS
T ss_pred             CCCEEEEecCC--CHHHHHH--HHhCCeEEEecCCCCCCHHHH-HHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECC
Confidence            58999999987  5777777  8888986542222 2234444 455689999999777899999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|..+. . .  ..  |.+|+|+|||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~-~--~~--~~~l~g~tvG  149 (330)
T 4e5n_A           76 KGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQ-P-R--FY--GTGLDNATVG  149 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCC-S-C--CC--CCCSTTCEEE
T ss_pred             CcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccC-c-c--cc--CCccCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999997321 1 1  22  7899999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      |||+|+||+.+|+++++|||+|++|++++...     .+. ...++++++++||+|++|+|++++|+++|+++.|+.||+
T Consensus       150 IIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~  228 (330)
T 4e5n_A          150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRP  228 (330)
T ss_dssp             EECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT
T ss_pred             EEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCC
Confidence            99999999999999999999999999986321     122 245899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC-------CCCC-CCCCCCCCCC
Q 022233          249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE-------PDVP-KELXXXXXXX  300 (300)
Q Consensus       249 ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E-------P~~~-~~L~~~~nv~  300 (300)
                      |++|||+|||+++|+++|+++|++|+|+||+||||++|       |++. +|||++|||+
T Consensus       229 gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvi  288 (330)
T 4e5n_A          229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL  288 (330)
T ss_dssp             TEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEE
T ss_pred             CcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEE
Confidence            99999999999999999999999999999999999999       9764 4899999985

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.6e-60  Score=451.73  Aligned_cols=272  Identities=25%  Similarity=0.314  Sum_probs=233.7

Q ss_pred             CCCeEEEECCCCCCccccchhhhccc-C-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEc
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNK-F-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTT   92 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~   92 (300)
                      +|+|||++++.  .+...+.  |++. | ++. +.....+.++ +.+.++++|++++++.+++++++++++|+||+|+++
T Consensus        14 ~~~kIl~~~~i--~~~~~~~--l~~~g~~~v~-~~~~~~~~~~-l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~   87 (416)
T 3k5p_A           14 DRINVLLLEGI--SQTAVEY--FKSSGYTNVT-HLPKALDKAD-LIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCF   87 (416)
T ss_dssp             GGSCEEECSCC--CHHHHHH--HHHTTCCCEE-ECSSCCCHHH-HHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEEC
T ss_pred             CCcEEEEECCC--CHHHHHH--HHHCCCcEEE-ECCCCCCHHH-HHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEEC
Confidence            35789999887  5655555  6654 5 443 3333334444 445568999998888889999999999999999999


Q ss_pred             CCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEE
Q 022233           93 SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRV  172 (300)
Q Consensus        93 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~v  172 (300)
                      |+|+||||+++|+++||.|+|+|++++++|||++++++|++.|+++.+++.+++|.|..   . .+  .  +.+++||||
T Consensus        88 ~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~---~-~~--~--~~el~gktv  159 (416)
T 3k5p_A           88 SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEK---T-AI--G--SREVRGKTL  159 (416)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C-CT--T--CCCSTTCEE
T ss_pred             ccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccc---c-CC--C--CccCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999982   2 11  2  678999999


Q ss_pred             EEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcE
Q 022233          173 GIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGV  251 (300)
Q Consensus       173 gIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~  251 (300)
                      ||||+|+||+.+|+++++|||+|++||+++.... ......+++|++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus       160 GIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gai  239 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAF  239 (416)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEE
T ss_pred             EEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcE
Confidence            9999999999999999999999999999765432 234457999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-----CCCCCCCCCC
Q 022233          252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-----KELXXXXXXX  300 (300)
Q Consensus       252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-----~~L~~~~nv~  300 (300)
                      |||+|||++||++||+++|++|+|+||+||||++||+++     +|||++|||+
T Consensus       240 lIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvi  293 (416)
T 3k5p_A          240 LINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVI  293 (416)
T ss_dssp             EEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEE
T ss_pred             EEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEE
Confidence            999999999999999999999999999999999999875     4899999985

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=2.1e-61  Score=450.88  Aligned_cols=232  Identities=30%  Similarity=0.463  Sum_probs=212.5

Q ss_pred             CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHH
Q 022233           62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASD  141 (300)
Q Consensus        62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~  141 (300)
                      +++|+++++...++++++|+++|+||+|++.|+|+||||+++|+++||.|+|+|++++.+||||+++++|++.|++..++
T Consensus        41 ~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~  120 (334)
T 3kb6_A           41 KKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIE  120 (334)
T ss_dssp             HHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             cCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccc
Confidence            57899999888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhh
Q 022233          142 RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAA  219 (300)
Q Consensus       142 ~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~  219 (300)
                      +.+++|.|....   .  ..  +.+|+|+||||||+|+||+.+|+++++|||+|++||+...+..  ....+.+++|+++
T Consensus       121 ~~~~~~~~~~~~---~--~~--~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~  193 (334)
T 3kb6_A          121 DRVKKLNFSQDS---E--IL--ARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLK  193 (334)
T ss_dssp             HHHHTTCCCCCG---G--GC--BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHH
T ss_pred             cccccccccccc---c--cc--cceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHh
Confidence            999999987321   1  22  7899999999999999999999999999999999998764321  2234579999999


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-C-------
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-K-------  291 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~-------  291 (300)
                      +||+|++|||+|++|+++|+++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++. +       
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~  273 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKA  273 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCC
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999742 1       


Q ss_pred             --------CCCCCCCCC
Q 022233          292 --------ELXXXXXXX  300 (300)
Q Consensus       292 --------~L~~~~nv~  300 (300)
                              |||++|||+
T Consensus       274 ~~~~~~~~~L~~~~nvi  290 (334)
T 3kb6_A          274 TDKNLKILELACKDNVI  290 (334)
T ss_dssp             CHHHHHHHHHHTSTTEE
T ss_pred             ccccccchhhccCCCEE
Confidence                    588999984

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2e-59  Score=447.35  Aligned_cols=271  Identities=20%  Similarity=0.304  Sum_probs=228.8

Q ss_pred             CCeEEEECCCCCCccccchhhhccc-C-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNK-F-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      ++|||++.++  .+...+.  |++. + ++.. .....+.+++ .+.++++|++++++.+++++++++++|+||+|+++|
T Consensus         4 ~~kil~~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~~~~l-~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~   77 (404)
T 1sc6_A            4 KIKFLLVEGV--HQKALES--LRAAGYTNIEF-HKGALDDEQL-KESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (404)
T ss_dssp             SCCEEECSCC--CHHHHHH--HHHTTCCCEEE-CSSCCCHHHH-HHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             ceEEEEeCCC--CHHHHHH--HHhCCCcEEEE-cCCCCCHHHH-HHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECC
Confidence            4589998876  4554545  6554 5 5543 3323344444 445689999988877899999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|..   . .+  .  +.+|+|||||
T Consensus        78 ~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~---~-~~--~--~~el~gktlG  149 (404)
T 1sc6_A           78 IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK---L-AA--G--SFEARGKKLG  149 (404)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------------CCCSTTCEEE
T ss_pred             cccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccc---c-CC--C--ccccCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999972   1 12  2  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC-CcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS-YPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      |||+|+||+.+|+++++|||+|++||++.....+ .....+++|++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus       150 iIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~l  229 (404)
T 1sc6_A          150 IIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL  229 (404)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEE
T ss_pred             EEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEE
Confidence            9999999999999999999999999997654433 344568999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-----CCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-----KELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-----~~L~~~~nv~  300 (300)
                      ||+|||+++|+++|+++|++|+++||+||||++||+++     +|||++|||+
T Consensus       230 IN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvi  282 (404)
T 1sc6_A          230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVL  282 (404)
T ss_dssp             EECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEE
T ss_pred             EECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEE
Confidence            99999999999999999999999999999999999863     4899999985

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.5e-59  Score=440.58  Aligned_cols=257  Identities=26%  Similarity=0.420  Sum_probs=225.0

Q ss_pred             hccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCC--CCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEe
Q 022233           37 SSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGG--APVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN  113 (300)
Q Consensus        37 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~--~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  113 (300)
                      |++. ++++.......+ ++.+.+.++++|+++++..  .++++++++++|+||+|++.|+|+||||+++|+++||.|+|
T Consensus        36 L~~~g~ev~~~~~~~~~-~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n  114 (351)
T 3jtm_A           36 LESQGHQYIVTDDKEGP-DCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAE  114 (351)
T ss_dssp             HHHTTCEEEEESCCSST-TSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEE
T ss_pred             HHHCCCEEEEeCCCCCC-HHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEE
Confidence            6554 676653333222 2334556689999998643  46999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC
Q 022233          114 AGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC  193 (300)
Q Consensus       114 ~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~  193 (300)
                      +|++++.+||||++++||++.|++..+++.+++|.|....    +...  +.+|+|++|||||+|+||+.+|++|++|||
T Consensus       115 ~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~----~~~~--~~~l~gktvGIIG~G~IG~~vA~~l~~~G~  188 (351)
T 3jtm_A          115 VTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAG----IAYR--AYDLEGKTIGTVGAGRIGKLLLQRLKPFGC  188 (351)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHH----HHTT--CCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             CCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccc----ccCC--cccccCCEEeEEEeCHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999997211    1012  678999999999999999999999999999


Q ss_pred             EEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          194 SISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       194 ~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      +|++|++++.+.     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++
T Consensus       189 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  268 (351)
T 3jtm_A          189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD  268 (351)
T ss_dssp             EEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH
T ss_pred             EEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHH
Confidence            999999876432     144445689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          269 CLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       269 aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      +|++|+|+||+||||++||+++ +|||++|||+
T Consensus       269 aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvi  301 (351)
T 3jtm_A          269 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQA  301 (351)
T ss_dssp             HHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBC
T ss_pred             HHHhCCccEEEeCCCCCCCCCCCChhhcCCCEE
Confidence            9999999999999999999875 5899999985

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=7.4e-60  Score=438.00  Aligned_cols=268  Identities=22%  Similarity=0.307  Sum_probs=228.9

Q ss_pred             CCCCCeEEEECCCCCCccccchhhh-cccC-eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEE
Q 022233           13 SQDLPRVLLFKPPPDFHLFGDECFS-SNKF-KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVM   90 (300)
Q Consensus        13 ~~~kp~vl~~~~~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~   90 (300)
                      |..|.|||++.+.  .+...+.  | ++.+ ++......  +.++ +.+.++++|+++++  .++++++++++|+||||+
T Consensus         2 ~~~~mkili~~~~--~~~~~~~--L~~~~~p~~~~~~~~--~~~~-~~~~~~~ad~li~~--~~~~~~~l~~~~~Lk~I~   72 (324)
T 3hg7_A            2 SLSQRTLLLLSQD--NAHYERL--LKAAHLPHLRILRAD--NQSD-AEKLIGEAHILMAE--PARAKPLLAKANKLSWFQ   72 (324)
T ss_dssp             --CCEEEEEESTT--HHHHHHH--HHHSCCTTEEEEECS--SHHH-HHHHGGGCSEEEEC--HHHHGGGGGGCTTCCEEE
T ss_pred             CccccEEEEecCC--CHHHHHH--HhhccCCCeEEEeCC--ChhH-HHHHhCCCEEEEEC--CCCCHHHHhhCCCceEEE
Confidence            5566789999887  4666666  7 5554 22211111  2233 34456789999974  356678999999999999


Q ss_pred             EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCC
Q 022233           91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK  170 (300)
Q Consensus        91 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~  170 (300)
                      +.|+|+|+||++++++ ||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..   .     .  +.+|+|+
T Consensus        73 ~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~-----~--~~~l~g~  141 (324)
T 3hg7_A           73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS---H-----P--YQGLKGR  141 (324)
T ss_dssp             ESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C-----C--CCCSTTC
T ss_pred             ECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC---C-----C--Ccccccc
Confidence            9999999999998854 99999999999999999999999999999999999999999972   1     1  6789999


Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      ||||||+|.||+++|++|++|||+|++|++++......   ....++++++++||+|++|+|++++|+++|+++.|+.||
T Consensus       142 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk  221 (324)
T 3hg7_A          142 TLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCK  221 (324)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSC
T ss_pred             eEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCC
Confidence            99999999999999999999999999999987543322   234689999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          248 KEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      +|++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||++|||+
T Consensus       222 ~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  275 (324)
T 3hg7_A          222 PGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLI  275 (324)
T ss_dssp             TTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEE
T ss_pred             CCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEE
Confidence            9999999999999999999999999999999999999999875 5999999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=4.1e-59  Score=438.93  Aligned_cols=273  Identities=22%  Similarity=0.362  Sum_probs=223.9

Q ss_pred             CCCeEEEECCCCC------CccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcce
Q 022233           15 DLPRVLLFKPPPD------FHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRL   88 (300)
Q Consensus        15 ~kp~vl~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~   88 (300)
                      +..+++++.+.+.      .+...+.  |++.|+++.+  ...+.++++.+...++++++.  ..++++++++++|+||+
T Consensus        26 ~~r~ivll~~~~~~~~~~~~~~~~~~--L~~~~~v~~~--~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~   99 (365)
T 4hy3_A           26 TERPLAISAPEPRSLDLIFSDEARAA--LHSKYEIVEA--DPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRS   99 (365)
T ss_dssp             --CCEEEEECTTSCHHHHCCHHHHHH--HHHHSEEEEC--CGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCE
T ss_pred             CCCCEEEEcCCcccccccCCHHHHHH--HhCCcEEEEC--CCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeE
Confidence            3445555555421      2223444  8888988742  222233444334456777774  46899999999999999


Q ss_pred             EEEc-CCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCccccc
Q 022233           89 VMTT-SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKL  167 (300)
Q Consensus        89 I~~~-~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l  167 (300)
                      |++. |+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+|+|.|.+. ....  ..  +.+|
T Consensus       100 I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~-~~~~--~~--~~~l  174 (365)
T 4hy3_A          100 ILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWG-GEGN--AS--ARLI  174 (365)
T ss_dssp             EECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCS-SSST--TS--CCCS
T ss_pred             EEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcccc-cccc--cc--cccc
Confidence            9975 899999999999999999999999999999999999999999999999999999995421 1111  22  7899


Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      +|+||||||+|.||+.+|+++++|||+|++||++....    .++ ...++++++++||+|++|+|++++|+++|+++.|
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l  253 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGV-EPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAF  253 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTC-EECCHHHHHHSCSEEEECSCSSCC---CCCHHHH
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCe-eeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHH
Confidence            99999999999999999999999999999999975321    133 2468999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      +.||+|++|||+|||++||++||+++|++|+|+ |+||||++||+++ +|||++|||+
T Consensus       254 ~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          254 SSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             HTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             hcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEE
Confidence            999999999999999999999999999999998 8999999999875 5999999985

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.3e-58  Score=432.78  Aligned_cols=281  Identities=22%  Similarity=0.302  Sum_probs=233.9

Q ss_pred             CeEEEECCCCCCcc-ccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEE-eCCCCCCHHHHccCCCcceEEEcCC
Q 022233           17 PRVLLFKPPPDFHL-FGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILS-SGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        17 p~vl~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~-~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      .||++++....... +...+.+. .+++..+.....+ ++.+.+.++++|++++ +...++++++++++|+||+|++.|+
T Consensus         3 mki~~~d~~~~~~~~~~~~~~l~-~~~v~~~~~~~~~-~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKLDCFSLLQ-DHEVKVFNNTVKG-VGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCCGGGSGGGGGGT-TSEEEECCSCCCS-HHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCccccchhhhhhhhhc-CceEEEecCCCCC-HHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            58999877632211 11111254 3776553332223 3444556689999998 4568999999999999999999999


Q ss_pred             CC----CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccC-CCccc-cCcccccC
Q 022233           95 GL----NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAE-GDCYS-LGIGSKLG  168 (300)
Q Consensus        95 G~----d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~-~~~g~~l~  168 (300)
                      |+    |+||+++|+++||.|+|+||+ +.+||||++++||++.|+++.+++.+++|.|...... ..|.+ ...|.+|+
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~  159 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK  159 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence            99    999999999999999999999 9999999999999999999999999999999732100 01110 01278999


Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      |+||||||+|.||+++|+++++|||+|++|+++...    ..++....++++++++||+|++|+|++++|+++|+++.|+
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  239 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT  239 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence            999999999999999999999999999999987532    1244455699999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      .||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||++|||+
T Consensus       240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvi  296 (352)
T 3gg9_A          240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCI  296 (352)
T ss_dssp             TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEE
T ss_pred             hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEE
Confidence            9999999999999999999999999999999999999999999874 5999999984

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=3.7e-58  Score=428.80  Aligned_cols=277  Identities=44%  Similarity=0.779  Sum_probs=242.9

Q ss_pred             cCCC-CCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEE
Q 022233           12 ESQD-LPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVM   90 (300)
Q Consensus        12 ~~~~-kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~   90 (300)
                      .+-| ||+||++.+.  .+...+.  +++.+++..+.. ..+.++++.+.++++|++++++..++++++++++|+||+|+
T Consensus        18 ~~~m~~~~vl~~~~~--~~~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~   92 (333)
T 3ba1_A           18 GSHMEAIGVLMMCPM--STYLEQE--LDKRFKLFRYWT-QPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVS   92 (333)
T ss_dssp             ----CCCEEEECSCC--CHHHHHH--HHHHSEEEEGGG-CSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEE
T ss_pred             cccCCCCEEEEeCCC--CHHHHHH--HHhcCCEEEecC-CCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEE
Confidence            3444 6899998876  4655555  777788755322 22345656666789999998777789999999999999999


Q ss_pred             EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCC
Q 022233           91 TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGK  170 (300)
Q Consensus        91 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~  170 (300)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..   . .+ +.  +.++.|+
T Consensus        93 ~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~---~-~~-~~--~~~l~g~  165 (333)
T 3ba1_A           93 SFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF---G-DF-KL--TTKFSGK  165 (333)
T ss_dssp             ESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGG---C-CC-CC--CCCCTTC
T ss_pred             EcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---c-cc-cc--ccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999962   1 12 23  7789999


Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      +|||||+|+||+.+|++++++|++|++|+++.....+.....++++++++||+|++|+|.+++|+++++++.++.||+|+
T Consensus       166 ~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~ga  245 (333)
T 3ba1_A          166 RVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG  245 (333)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCC
Confidence            99999999999999999999999999999987665455556789999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|||+|||.++|+++|.++|++|+++||+||||++||++++|||++|||+
T Consensus       246 ilIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nvi  295 (333)
T 3ba1_A          246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVV  295 (333)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEE
T ss_pred             EEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEE
Confidence            99999999999999999999999999999999999998777999999974

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=6.4e-59  Score=432.07  Aligned_cols=262  Identities=20%  Similarity=0.322  Sum_probs=227.4

Q ss_pred             CeEEEECCCCCCccccchhhhcccC---eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHH-ccCCCcceEEEc
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSNKF---KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETL-RLMPAVRLVMTT   92 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l-~~~p~Lk~I~~~   92 (300)
                      .|||++.++  .++..+.  |++.+   ++.. .. +...     +.++++|+++++. .++ ++++ +.+|+||||++.
T Consensus         2 ~kil~~~~~--~~~~~~~--L~~~~~~~~~~~-~~-~~~~-----~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~   68 (324)
T 3evt_A            2 SLVLMAQAT--KPEQLQQ--LQTTYPDWTFKD-AA-AVTA-----ADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVI   68 (324)
T ss_dssp             CEEEECSCC--CHHHHHH--HHHHCTTCEEEE-TT-SCCT-----TTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECS
T ss_pred             cEEEEecCC--CHHHHHH--HHhhCCCeEEec-CC-ccCh-----HHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEEC
Confidence            579999887  5666666  77654   3332 21 1111     2236799988754 356 8999 789999999999


Q ss_pred             CCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHH-HHHHHhCCCCCcccCCCccccCcccccCCCE
Q 022233           93 SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISAS-DRFVKQWLRPRQAAEGDCYSLGIGSKLGGKR  171 (300)
Q Consensus        93 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~-~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~  171 (300)
                      |+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+ ++.+++|.|..   .    ..  +.+|+|+|
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~---~----~~--~~~l~gkt  139 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWAL---P----MT--TSTLTGQQ  139 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSC---S----SC--CCCSTTCE
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCccc---C----CC--CccccCCe
Confidence            999999999999999999999999999999999999999999999999 99999999982   1    11  67899999


Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC---cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY---PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~---~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      |||||+|.||+.+|++|++|||+|++|++++.+....   ....++++++++||+|++|+|++++|+++|+++.|+.||+
T Consensus       140 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~  219 (324)
T 3evt_A          140 LLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQ  219 (324)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCS
T ss_pred             EEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCC
Confidence            9999999999999999999999999999987654322   2246899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       249 ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      |++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||++|||+
T Consensus       220 gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvi  272 (324)
T 3evt_A          220 QPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVL  272 (324)
T ss_dssp             CCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEE
T ss_pred             CCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEE
Confidence            999999999999999999999999999999999999999875 5999999984

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=3e-58  Score=430.26  Aligned_cols=273  Identities=20%  Similarity=0.326  Sum_probs=226.5

Q ss_pred             CeEEEECCCCCCccccchhhhcc-cCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHH-HHccCC--CcceEEEc
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSN-KFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAE-TLRLMP--AVRLVMTT   92 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e-~l~~~p--~Lk~I~~~   92 (300)
                      .||++++..+...++.+. ++++ .+++.... ...+ ++ +.+.++++|++++++..+++++ +++++|  +||+|++.
T Consensus         2 mki~~~~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~-~~-~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~   77 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIED-WAKKNDVEIKTTD-QALT-SA-TVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLR   77 (343)
T ss_dssp             CEEEEESCCGGGHHHHHH-HHHHHTCEEEEES-SCCS-TT-GGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEES
T ss_pred             ceEEEEecCcccHHHHHH-HHHhCCeEEEECC-CCCC-HH-HHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEEC
Confidence            478888743212223322 1222 35554422 2222 23 2345689999999877899999 999986  69999999


Q ss_pred             CCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHH-hCCCCCcccCCCccccCcccccCCCE
Q 022233           93 SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVK-QWLRPRQAAEGDCYSLGIGSKLGGKR  171 (300)
Q Consensus        93 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~-~g~w~~~~~~~~~~~~~~g~~l~g~~  171 (300)
                      |+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.++ +|+|.+.  . .  ..  +.+|+|+|
T Consensus        78 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~--~-~--~~--~~~l~gkt  150 (343)
T 2yq5_A           78 IVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP--S-N--LI--SNEIYNLT  150 (343)
T ss_dssp             SSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCC--G-G--GC--BCCGGGSE
T ss_pred             ceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccc--c-C--CC--ccccCCCe
Confidence            99999999999999999999999999999999999999999999999999999 9987621  1 1  22  78999999


Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      |||||+|.||+.+|+++++|||+|++|+++..+.. ....+.++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       151 vgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  230 (343)
T 2yq5_A          151 VGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSA  230 (343)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTC
T ss_pred             EEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCc
Confidence            99999999999999999999999999999875422 22234589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCC------------CCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD--VPK------------ELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~--~~~------------~L~~~~nv~  300 (300)
                      +|||+|||+++|++||+++|++|+|+||+||||++||+  +.+            |||++|||+
T Consensus       231 ilIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          231 YLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             EEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            99999999999999999999999999999999999993  332            699999985

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-57  Score=423.35  Aligned_cols=269  Identities=27%  Similarity=0.412  Sum_probs=233.3

Q ss_pred             CCeEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      .+|||++.+.  .+...+.  +++. +++.. .. ..+.+++ .+.++++|++++++..++++++++++|+||||++.|+
T Consensus        26 ~~~vli~~~~--~~~~~~~--l~~~~~~v~~-~~-~~~~~~~-~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~   98 (335)
T 2g76_A           26 LRKVLISDSL--DPCCRKI--LQDGGLQVVE-KQ-NLSKEEL-IAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGT   98 (335)
T ss_dssp             CCEEEECSCC--CHHHHHH--HHHHTCEEEE-CC-SCCHHHH-HHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSS
T ss_pred             ceEEEEcCCC--CHHHHHH--HHhCCCEEEE-CC-CCCHHHH-HHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCC
Confidence            3588888775  4544444  5554 56543 22 2234444 4445799999988777899999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI  174 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI  174 (300)
                      |+|+||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|..   . .+  .  +.++.|++|||
T Consensus        99 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~-~~--~--~~~l~g~tvgI  170 (335)
T 2g76_A           99 GVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---K-KF--M--GTELNGKTLGI  170 (335)
T ss_dssp             SCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---G-GG--C--BCCCTTCEEEE
T ss_pred             CcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---c-CC--C--CcCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999972   1 11  2  67899999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      ||+|.||+.+|+++++|||+|++||++..+.    .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       171 IGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  249 (335)
T 2g76_A          171 LGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV  249 (335)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTE
T ss_pred             EeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCc
Confidence            9999999999999999999999999876431    1332 3589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|||+|||+++|+++|+++|++|+|+||+||||+.||++++|||++|||+
T Consensus       250 ilIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvi  299 (335)
T 2g76_A          250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVI  299 (335)
T ss_dssp             EEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEE
T ss_pred             EEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEE
Confidence            99999999999999999999999999999999999996667999999984

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=9.8e-57  Score=421.18  Aligned_cols=289  Identities=23%  Similarity=0.361  Sum_probs=233.6

Q ss_pred             cCCCCCCcCCCCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC
Q 022233            5 HGHGKEKESQDLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP   84 (300)
Q Consensus         5 ~~~~~~~~~~~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p   84 (300)
                      |.+|-.-..+.||+|+++++.....+ .+.  ++..+++..+ +. .+.++++++...++|+++++...++++++++++|
T Consensus        10 ~~~~~~~~~~~kp~i~~l~~~~~~~~-~~~--l~~~~~~~~~-~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (347)
T 1mx3_A           10 HSSGLVPRGSHMPLVALLDGRDCTVE-MPI--LKDVATVAFC-DA-QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFK   84 (347)
T ss_dssp             -----------CCEEEESSCSCCTTT-HHH--HTTTCEEEEC-CC-SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCS
T ss_pred             cccccCCCCCCCCEEEEEcCCcchhh-HHH--hhccceEEec-CC-CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCC
Confidence            66777777788999999986422221 333  6777776553 22 2334444433357888888777789999999999


Q ss_pred             CcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccC-CCccccCc
Q 022233           85 AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAE-GDCYSLGI  163 (300)
Q Consensus        85 ~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~~~~  163 (300)
                      +||+|++.|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|...... ..+ .. .
T Consensus        85 ~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~-~~-~  162 (347)
T 1mx3_A           85 ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREV-AS-G  162 (347)
T ss_dssp             SCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHH-TT-T
T ss_pred             CCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccccccccccc-cc-C
Confidence            99999999999999999999999999999999999999999999999999999999999999999621000 000 01 0


Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      +.++.|++|||||+|+||+.+|++|+++||+|++|+++..+..    +.....++++++++||+|++|+|++++|+++|+
T Consensus       163 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          163 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             ccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            2689999999999999999999999999999999998765421    333445899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC--CCCCCCCCCC
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP--KELXXXXXXX  300 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~--~~L~~~~nv~  300 (300)
                      ++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||+.||++.  +|||.+|||+
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi  305 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI  305 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEE
T ss_pred             HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEE
Confidence            999999999999999999999999999999999999999999999999863  5899999984

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.2e-57  Score=416.58  Aligned_cols=270  Identities=30%  Similarity=0.484  Sum_probs=232.4

Q ss_pred             CCCeEEEECCCCCCccccchhhhcc-cCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSN-KFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      |++||+++.+.  .+...+.  +++ .+++..  ....+.++ +.+.++++|++++++..++++++++++|+||+|++.|
T Consensus         2 ~~~~il~~~~~--~~~~~~~--l~~~~~~~~~--~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~   74 (307)
T 1wwk_A            2 KRMKVLVAAPL--HEKAIQV--LKDAGLEVIY--EEYPDEDR-LVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAG   74 (307)
T ss_dssp             --CEEEECSCC--CHHHHHH--HHHTTCEEEE--CSSCCHHH-HHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESS
T ss_pred             CceEEEEeCCC--CHHHHHH--HHhCCeEEEe--CCCCCHHH-HHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECC
Confidence            46789998875  4444444  555 355543  22223334 4445689999998766679999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.+   . .+  .  +.++.|++||
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~-~~--~--~~~l~g~~vg  146 (307)
T 1wwk_A           75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---K-EA--M--GIELEGKTIG  146 (307)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---T-TC--C--BCCCTTCEEE
T ss_pred             ccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---c-Cc--C--CcccCCceEE
Confidence            9999999999999999999999999999999999999999999999999999999972   1 11  2  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCC
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE  249 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~g  249 (300)
                      |||+|.||+.+|++++++|++|++|+++....    .+.. ..++++++++||+|++|+|++++|+++++++.++.||+|
T Consensus       147 IiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~g  225 (307)
T 1wwk_A          147 IIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKT  225 (307)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTT
T ss_pred             EEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCC
Confidence            99999999999999999999999999987531    2333 358999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCCCCC
Q 022233          250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV-PKELXXXXXXX  300 (300)
Q Consensus       250 a~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~-~~~L~~~~nv~  300 (300)
                      +++||+|||+++|+++|.++|++|+|+||+||||+.||++ ++|||++|||+
T Consensus       226 a~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nvi  277 (307)
T 1wwk_A          226 AILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV  277 (307)
T ss_dssp             CEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEE
T ss_pred             eEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEE
Confidence            9999999999999999999999999999999999999985 46899999984

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-56  Score=413.13  Aligned_cols=271  Identities=30%  Similarity=0.467  Sum_probs=234.2

Q ss_pred             CeEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG   95 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G   95 (300)
                      ||||++.+.  .++..+.  +++. +++........+.++ +.+.++++|+++++...++++++++++|+||+|++.|+|
T Consensus         1 ~~vl~~~~~--~~~~~~~--l~~~g~~v~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G   75 (311)
T 2cuk_A            1 MRVLVTRTL--PGKALDR--LRERGLEVEVHRGLFLPKAE-LLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVG   75 (311)
T ss_dssp             CEEEESSCC--SSSTTHH--HHHTTCEEEECCSSCCCHHH-HHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSC
T ss_pred             CEEEEeCCC--CHHHHHH--HHhcCCeEEEecCCCCCHHH-HHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcC
Confidence            578888775  4555555  7776 776542222223344 444568999999876678999999999999999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV  175 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi  175 (300)
                      +|+||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ...  ..  +.++.|++||||
T Consensus        76 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~--~~--~~~l~g~~vgII  150 (311)
T 2cuk_A           76 VDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWH-PEL--LL--GLDLQGLTLGLV  150 (311)
T ss_dssp             CTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC-TTT--TC--BCCCTTCEEEEE
T ss_pred             ccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccc-ccc--cc--CcCCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999996211 101  12  678999999999


Q ss_pred             ecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233          176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~  255 (300)
                      |+|.||+.+|++++++|++|++|+++..... . ...++++++++||+|++|+|++++|+++++++.++.||+|+++||+
T Consensus       151 G~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~  228 (311)
T 2cuk_A          151 GMGRIGQAVAKRALAFGMRVVYHARTPKPLP-Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNT  228 (311)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             EECHHHHHHHHHHHHCCCEEEEECCCCcccc-c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEEC
Confidence            9999999999999999999999999876543 2 3568999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          256 GRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       256 srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      |||+++|+++|.++|+ |+|+||+||||++||++. +|||++|||+
T Consensus       229 srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nvi  273 (311)
T 2cuk_A          229 ARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAV  273 (311)
T ss_dssp             SCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEE
T ss_pred             CCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEE
Confidence            9999999999999999 999999999999999764 5899999984

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.5e-56  Score=416.25  Aligned_cols=274  Identities=26%  Similarity=0.443  Sum_probs=234.8

Q ss_pred             CeEEEECCCCCCccccchhhhcccCeEEEecCCC-CChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC-cceEEEcCC
Q 022233           17 PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESP-LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA-VRLVMTTSA   94 (300)
Q Consensus        17 p~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~-Lk~I~~~~~   94 (300)
                      ++||++.+.  .+...+.  +++.+++....... .+.++ +.+.++++|+++++...++++++++++|+ ||||++.|+
T Consensus         2 ~~vl~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~   76 (320)
T 1gdh_A            2 KKILITWPL--PEAAMAR--ARESYDVIAHGDDPKITIDE-MIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (320)
T ss_dssp             CEEEESSCC--CHHHHHH--HHTTSEEEECCSTTCCCHHH-HHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             cEEEEcCCC--CHHHHHH--HHhcCCEEEecCCCCCCHHH-HHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCc
Confidence            578888765  4555555  77777764322221 23344 44456899999988767899999999999 999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI  174 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI  174 (300)
                      |+|+||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ...  ..  +.++.|++|||
T Consensus        77 G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~--~~--~~~l~g~~vgI  151 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE-PLE--LV--GEKLDNKTLGI  151 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC-TTT--TC--BCCCTTCEEEE
T ss_pred             ccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccc-ccc--cc--CcCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999996211 001  12  67899999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEECC-CCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCC
Q 022233          175 VGLGSIGSLVAKRLDAFGCSISYNSR-TKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKE  249 (300)
Q Consensus       175 iG~G~IG~~~A~~l~~~g~~V~~~~~-~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~g  249 (300)
                      ||+|+||+++|++++++|++|++|++ +....    .+.....++++++++||+|++|+|++++|+++++++.++.||+|
T Consensus       152 IG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~g  231 (320)
T 1gdh_A          152 YGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG  231 (320)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTT
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCC
Confidence            99999999999999999999999999 76532    13333448999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          250 GVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       250 a~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ++|||+|||+++|+++|.++|++|+|+||+||||+.||...+|||++|||+
T Consensus       232 ailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nvi  282 (320)
T 1gdh_A          232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTF  282 (320)
T ss_dssp             EEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEE
T ss_pred             cEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEE
Confidence            999999999999999999999999999999999999994456999999985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.9e-56  Score=417.40  Aligned_cols=272  Identities=19%  Similarity=0.296  Sum_probs=228.4

Q ss_pred             eEEEECCCCCCccccchhhhcccCe--EEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC--cceEEEcC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFK--FLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTS   93 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~--Lk~I~~~~   93 (300)
                      ||+++...+......+.  +.+.++  +.. .....+.++ +.+.++++|++++++..++++++++++|+  ||+|++.|
T Consensus         2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~   77 (331)
T 1xdw_A            2 KVLCYGVRDVELPIFEA--CNKEFGYDIKC-VPDYLNTKE-TAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRT   77 (331)
T ss_dssp             EEEECSCCTTTHHHHHH--HGGGTCCEEEE-CSCCSCSHH-HHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESS
T ss_pred             EEEEEecCccCHHHHHH--HHHhcCeEEEE-CCCCCCHHH-HHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEcc
Confidence            68886543323333444  554443  332 222222233 34456899999998778899999999998  99999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+.  . .+  .  +.++.|++||
T Consensus        78 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~-~~--~--~~~l~g~~vg  150 (331)
T 1xdw_A           78 AGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVD--A-FM--F--SKEVRNCTVG  150 (331)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCC--S-TT--C--CCCGGGSEEE
T ss_pred             ccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccc--c-Cc--C--ccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999621  1 11  2  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      |||+|.||+.+|+++++|||+|++|+++..... ....+.++++++++||+|++|+|++++|+++|+++.|+.||+|+++
T Consensus       151 IiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~l  230 (331)
T 1xdw_A          151 VVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAIL  230 (331)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEE
T ss_pred             EECcCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEE
Confidence            999999999999999999999999998765431 1123458999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CC--------C----CCCCC-CCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD--VP--------K----ELXXX-XXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~--~~--------~----~L~~~-~nv~  300 (300)
                      ||+|||+++|+++|+++|++|+|+||+||||++||+  ++        +    |||++ |||+
T Consensus       231 in~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvi  293 (331)
T 1xdw_A          231 VNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVL  293 (331)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEE
T ss_pred             EECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEE
Confidence            999999999999999999999999999999999994  21        2    69999 9985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=9.9e-57  Score=416.06  Aligned_cols=260  Identities=21%  Similarity=0.295  Sum_probs=220.6

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccC---eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEE
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKF---KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMT   91 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~   91 (300)
                      |..||+++.+....+.+.+.  +++.+   ++.. +.. .        ..+++|+++++.   .++++++. |+||+|++
T Consensus         2 ~~mkil~~~~~~~~~~~~~~--l~~~~p~~~~~~-~~~-~--------~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~   65 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNA--LEKALPHARVRE-WKV-G--------DNNPADYALVWQ---PPVEMLAG-RRLKAVFV   65 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHH--HHHHSTTEEEEE-CCT-T--------CCSCCSEEEESS---CCHHHHTT-CCCSEEEE
T ss_pred             CceEEEEEcCCCchHHHHHH--HHHHCCCCEEEe-cCC-C--------CccCcEEEEECC---CCHHHhCC-CCceEEEE
Confidence            34579988775212334444  66555   2322 221 1        125899999863   58999999 99999999


Q ss_pred             cCCCCCCC-C-hhH---HhhCCeEEEeCCCCC-chhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCccc
Q 022233           92 TSAGLNHV-D-IAE---CRRRGITVANAGNVF-SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGS  165 (300)
Q Consensus        92 ~~~G~d~i-d-~~~---~~~~gI~v~n~p~~~-~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~  165 (300)
                      .|+|+||| | +++   +.++||.|+|++++. +.+||||+++++|++.|++..+++.+++|.|..   .     .  +.
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~-----~--~~  135 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKP---L-----P--EY  135 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C-----C--CC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCC---C-----C--CC
Confidence            99999999 7 887   788999999998764 799999999999999999999999999999972   1     1  67


Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcc---cCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPF---YSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~---~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +++|+||||||+|.||+.+|+++++|||+|++|++++....+...   ..++++++++||+|++|+|++++|+++|+++.
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  215 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSEL  215 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHH
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHH
Confidence            899999999999999999999999999999999998765443322   25899999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      |+.||+|++|||+|||++||+++|+++|++|+|+||+||||++||+++ +|||++|||+
T Consensus       216 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvi  274 (315)
T 3pp8_A          216 LDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVA  274 (315)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEE
T ss_pred             HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEE
Confidence            999999999999999999999999999999999999999999999875 5999999984

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.5e-56  Score=422.71  Aligned_cols=275  Identities=21%  Similarity=0.281  Sum_probs=230.3

Q ss_pred             CCCeEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEE
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMT   91 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~   91 (300)
                      .||+||+.+..  .+.+.+.  +++. +++..+.....+.++ +.+.++++|+++++.  ..++++++++++|+||+|++
T Consensus        16 ~~~~vl~~d~~--~~~~~~~--l~~~~~~v~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~   90 (364)
T 2j6i_A           16 DEEKLYGCTEN--KLGIANW--LKDQGHELITTSDKEGGNSV-LDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVV   90 (364)
T ss_dssp             HCTTCTTBTTT--GGGCHHH--HHHTTCEEEEESCCSSTTSH-HHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEE
T ss_pred             cCceEEEecCc--cHHHHHH--HHhCCCEEEEcCCCCCCHHH-HHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEE
Confidence            45677777664  3444444  5543 565443222212223 344557899998854  24689999999999999999


Q ss_pred             cCCCCCCCChhHHhhC--CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCC
Q 022233           92 TSAGLNHVDIAECRRR--GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGG  169 (300)
Q Consensus        92 ~~~G~d~id~~~~~~~--gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g  169 (300)
                      .|+|+||||+++|+++  ||.|+|+|++++.+||||++++||++.|++..+++.+++|.|...    .+...  +.+|+|
T Consensus        91 ~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~~--~~~l~g  164 (364)
T 2j6i_A           91 AGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVA----AIAKD--AYDIEG  164 (364)
T ss_dssp             SSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH----HHHTT--CCCSTT
T ss_pred             CCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcC----cccCC--cccCCC
Confidence            9999999999999999  999999999999999999999999999999999999999999721    01012  678999


Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|||||+|+||+.+|++|++|||+ |++|+++..+.     .+.....++++++++||+|++|+|++++|+++|+++.|
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  244 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELL  244 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHH
Confidence            9999999999999999999999997 99999876432     13333468999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCC--C---CCC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXX--X---XXX  300 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~--~---nv~  300 (300)
                      +.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++ +|||.+  |   ||+
T Consensus       245 ~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvi  307 (364)
T 2j6i_A          245 SKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNA  307 (364)
T ss_dssp             TTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEE
T ss_pred             hhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEE
Confidence            99999999999999999999999999999999999999999999875 589999  9   984

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-56  Score=418.87  Aligned_cols=271  Identities=20%  Similarity=0.323  Sum_probs=226.4

Q ss_pred             eEEEECCCCCCccccchhhhccc--CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC--cceEEEcC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK--FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTTS   93 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~--Lk~I~~~~   93 (300)
                      ||+++...+......+.  +.+.  +++.. .....+ ++ +.+.++++|++++++..++++++++++|+  ||+|++.|
T Consensus         2 kil~~~~~~~~~~~~~~--l~~~~~~~v~~-~~~~~~-~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~   76 (333)
T 1dxy_A            2 KIIAYGARVDEIQYFKQ--WAKDTGNTLEY-HTEFLD-EN-TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRN   76 (333)
T ss_dssp             EEEECSCCTTTHHHHHH--HHHHHCCEEEE-CSSCCC-TT-GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESS
T ss_pred             EEEEEeccccCHHHHHH--HHHhCCeEEEE-cCCCCh-HH-HHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcC
Confidence            57876543223333333  4433  34433 222211 22 33445799999997778899999999988  99999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEE
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVG  173 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vg  173 (300)
                      +|+|+||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+.  .. +  .  +.++.|++||
T Consensus        77 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~~-~--~--~~~l~g~~vg  149 (333)
T 1dxy_A           77 VGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA--GT-F--I--GKELGQQTVG  149 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHH--TC-C--C--CCCGGGSEEE
T ss_pred             cccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccc--cC-C--C--ccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999998510  11 1  2  6789999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          174 IVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       174 IiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      |||+|.||+.+|+++++|||+|++|+++..... ....+.++++++++||+|++|+|++++|+++|+++.|+.||+|++|
T Consensus       150 IiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~l  229 (333)
T 1dxy_A          150 VMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIV  229 (333)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEE
T ss_pred             EECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEE
Confidence            999999999999999999999999998765431 1123458999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC----------CC----CCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD----------VP----KELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~----------~~----~~L~~~~nv~  300 (300)
                      ||+|||+++|+++|+++|++|+|+||+||||++||+          ++    +|||++|||+
T Consensus       230 In~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi  291 (333)
T 1dxy_A          230 INTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVV  291 (333)
T ss_dssp             EECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEE
T ss_pred             EECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEE
Confidence            999999999999999999999999999999999993          12    3699999985

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=3.3e-56  Score=416.00  Aligned_cols=270  Identities=20%  Similarity=0.337  Sum_probs=226.4

Q ss_pred             eEEEECCCCCCccccchhhhcccC---eEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCC--cceEEEc
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKF---KFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPA--VRLVMTT   92 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~--Lk~I~~~   92 (300)
                      ||+++...+......+.  +.+.+   ++.. .....+ ++ +.+.++++|++++++..++++++++++|+  ||+|++.
T Consensus         3 kil~~~~~~~~~~~~~~--l~~~~p~~~v~~-~~~~~~-~~-~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~   77 (333)
T 1j4a_A            3 KIFAYAIREDEKPFLKE--WEDAHKDVEVEY-TDKLLT-PE-TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLR   77 (333)
T ss_dssp             EEEECSCCGGGHHHHHH--HHHTCTTSEEEE-CSSCCC-TT-TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             EEEEEecCccCHHHHHH--HHhhCCCcEEEE-CCCCCc-HH-HHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEEC
Confidence            68887554222223333  55443   5543 222111 22 33445799999997777899999999988  9999999


Q ss_pred             CCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEE
Q 022233           93 SAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRV  172 (300)
Q Consensus        93 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~v  172 (300)
                      |+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|.+   .. +  .  +.++.|++|
T Consensus        78 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~---~~-~--~--~~~l~g~~v  149 (333)
T 1j4a_A           78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRW---AP-T--I--GREVRDQVV  149 (333)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCC---TT-C--C--BCCGGGSEE
T ss_pred             CcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcc---CC-c--c--cccCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999962   11 1  2  778999999


Q ss_pred             EEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          173 GIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       173 gIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      ||||+|.||+.+|++++++||+|++|+++..+..  ......++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       150 gIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  229 (333)
T 1j4a_A          150 GVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDV  229 (333)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTE
T ss_pred             EEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCc
Confidence            9999999999999999999999999999765321  12233489999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CC--------C----CCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD--VP--------K----ELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~--~~--------~----~L~~~~nv~  300 (300)
                      ++||+|||+++|+++|+++|++|+|+||+||||++||+  ++        +    |||++|||+
T Consensus       230 ~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvi  293 (333)
T 1j4a_A          230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL  293 (333)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEE
T ss_pred             EEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEE
Confidence            99999999999999999999999999999999999993  22        1    499999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.3e-55  Score=418.80  Aligned_cols=238  Identities=25%  Similarity=0.404  Sum_probs=214.2

Q ss_pred             HHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHh
Q 022233           57 LKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL  134 (300)
Q Consensus        57 l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~  134 (300)
                      +.+.++++|++++..  ..++++++++++|+||+|++.|+|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus        83 l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~  162 (393)
T 2nac_A           83 FERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV  162 (393)
T ss_dssp             HHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHH
Confidence            334457999998753  457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc
Q 022233          135 RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP  209 (300)
Q Consensus       135 R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~  209 (300)
                      |++..+++.+++|.|...   ... ..  +.+|+|++|||||+|+||+.+|+++++|||+|++|+++....     .+..
T Consensus       163 R~~~~~~~~~~~g~W~~~---~~~-~~--~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~  236 (393)
T 2nac_A          163 RNYLPSHEWARKGGWNIA---DCV-SH--AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLT  236 (393)
T ss_dssp             TTHHHHHHHHHTTCCCHH---HHH-TT--CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCE
T ss_pred             hccHHHHHHHHcCCCCcc---ccc-cC--CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCce
Confidence            999999999999999721   000 12  678999999999999999999999999999999999876432     1333


Q ss_pred             ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC
Q 022233          210 FYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDV  289 (300)
Q Consensus       210 ~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~  289 (300)
                      ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||++
T Consensus       237 ~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~  316 (393)
T 2nac_A          237 WHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP  316 (393)
T ss_dssp             ECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCC
T ss_pred             ecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C-CCCCCCCCCC
Q 022233          290 P-KELXXXXXXX  300 (300)
Q Consensus       290 ~-~~L~~~~nv~  300 (300)
                      . +|||++|||+
T Consensus       317 ~~~pL~~~~nvi  328 (393)
T 2nac_A          317 KDHPWRTMPYNG  328 (393)
T ss_dssp             TTCGGGTSTTBC
T ss_pred             CCChhHcCCCEE
Confidence            4 5899999985

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.4e-55  Score=408.51  Aligned_cols=265  Identities=20%  Similarity=0.327  Sum_probs=231.7

Q ss_pred             eEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL   96 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~   96 (300)
                      |||++.+.  .+...+.  +++. +++..  ....+.+++ .+.++++|++++++..++++++++++|+||+|++.|+|+
T Consensus         7 kil~~~~~--~~~~~~~--l~~~~~~v~~--~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   79 (313)
T 2ekl_A            7 KALITDPI--DEILIKT--LREKGIQVDY--MPEISKEEL-LNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGL   79 (313)
T ss_dssp             EEEECSCC--CHHHHHH--HHHTTCEEEE--CTTCCHHHH-HHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCC
T ss_pred             EEEEECCC--CHHHHHH--HHhCCcEEEe--CCCCCHHHH-HHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCC
Confidence            78888775  4544444  6554 55532  222233444 445679999998766789999999999999999999999


Q ss_pred             CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233           97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG  176 (300)
Q Consensus        97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG  176 (300)
                      |+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|.    .    ..  +.++.|++|||||
T Consensus        80 d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~----~----~~--~~~l~g~~vgIIG  149 (313)
T 2ekl_A           80 DNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK----K----IE--GLELAGKTIGIVG  149 (313)
T ss_dssp             TTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC----C----CC--CCCCTTCEEEEES
T ss_pred             CccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC----C----CC--CCCCCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999996    1    12  6789999999999


Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      +|+||+.+|++++++|++|++|+++....    .+.. ..++++++++||+|++|+|++++|+++++++.++.||+|+++
T Consensus       150 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~l  228 (313)
T 2ekl_A          150 FGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVII  228 (313)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEE
Confidence            99999999999999999999999987532    2333 358999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC---CCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK---ELXXXXXXX  300 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~---~L~~~~nv~  300 (300)
                      ||+|||+++|+++|.++|++|+|+||+||||++||++++   |||++|||+
T Consensus       229 In~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nvi  279 (313)
T 2ekl_A          229 VNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVI  279 (313)
T ss_dssp             EESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEE
T ss_pred             EECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEE
Confidence            999999999999999999999999999999999998877   899999984

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3e-54  Score=405.05  Aligned_cols=278  Identities=26%  Similarity=0.384  Sum_probs=233.0

Q ss_pred             CCCeEEEECC-CCCCccccchhhhcccCeEEEecCCCCChHHHHHhcc----CCcEEEEEe------CCCCCCHHHHccC
Q 022233           15 DLPRVLLFKP-PPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHA----QSVEAILSS------GGAPVTAETLRLM   83 (300)
Q Consensus        15 ~kp~vl~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~~~d~ii~~------~~~~~~~e~l~~~   83 (300)
                      +|||||++++ .+..+...+.  |++.++++.+ . ..+.+++++...    .++|+|++.      ...++++++++++
T Consensus         2 ~~~~vl~~~~~~~~~~~~~~~--l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            2 PRPRVLLLGDPARHLDDLWSD--FQQKFEVIPA-N-LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCCEEEECSSCCSSCHHHHHH--HHHHSEEEEC-C-CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CCcEEEEECCccccChHHHHH--HHhcceEEec-C-CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            4789999987 4322333444  7777887553 2 224455554432    278988864      2458999999999


Q ss_pred             C-CcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCC---CCCcccCCCcc
Q 022233           84 P-AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWL---RPRQAAEGDCY  159 (300)
Q Consensus        84 p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~---w~~~~~~~~~~  159 (300)
                      | +||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.   |.... ...+ 
T Consensus        78 ~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~-~~~~-  155 (348)
T 2w2k_A           78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVH-LEIG-  155 (348)
T ss_dssp             CTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHH-HHHH-
T ss_pred             ccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccc-cccc-
Confidence            8 6999999999999999999999999999999999999999999999999999999999999999   94100 0000 


Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHH-hCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..  +.+|+|++|||||+|.||+.+|++++ ++|++|++||++.....     +.....++++++++||+|++|+|.+++
T Consensus       156 ~~--~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          156 KS--AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             TT--CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG
T ss_pred             cc--CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH
Confidence            12  67899999999999999999999999 99999999999865321     333345899999999999999999999


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      |+++++++.++.||+|++|||+|||+++|+++|.++|++|+|.||++|||++||...++||++|||+
T Consensus       234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nvi  300 (348)
T 2w2k_A          234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT  300 (348)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEE
T ss_pred             HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEE
Confidence            9999999999999999999999999999999999999999999999999999995445899999985

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=8.3e-54  Score=399.46  Aligned_cols=279  Identities=25%  Similarity=0.378  Sum_probs=234.6

Q ss_pred             CcCCCCCeEEEECCCCCCccccchhhhccc--CeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccC-CCc
Q 022233           11 KESQDLPRVLLFKPPPDFHLFGDECFSSNK--FKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLM-PAV   86 (300)
Q Consensus        11 ~~~~~kp~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~-p~L   86 (300)
                      +...+|+|||++.+.  .+...+.  +++.  +++..+... ..+.+++ .+.++++|++++++..++++++++++ |+|
T Consensus         3 ~~~~~~~~il~~~~~--~~~~~~~--l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~l~~~~~~L   77 (330)
T 2gcg_A            3 MRPVRLMKVFVTRRI--PAEGRVA--LARAADCEVEQWDSDEPIPAKEL-ERGVAGAHGLLCLLSDHVDKRILDAAGANL   77 (330)
T ss_dssp             ----CCEEEEESSCC--CHHHHHH--HHHCTTEEEEECCSSSCCCHHHH-HHHHTTCSEEEECTTSCBCHHHHHHHCTTC
T ss_pred             CCCCCCCEEEEECCC--CHHHHHH--HHhcCCceEEEecCCCCCCHHHH-HHHhcCCeEEEECCCCCCCHHHHHhcCCCc
Confidence            444567789998765  4555555  6666  666442211 2233444 44557999999877778999999999 999


Q ss_pred             ceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccc
Q 022233           87 RLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSK  166 (300)
Q Consensus        87 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~  166 (300)
                      |||++.|+|+|+||+++++++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.... . .. ..  |.+
T Consensus        78 k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~-~-~~-~~--~~~  152 (330)
T 2gcg_A           78 KVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWK-P-LW-LC--GYG  152 (330)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCC-T-TS-SC--BCC
T ss_pred             eEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccC-c-cc-cc--CcC
Confidence            9999999999999999999999999999999999999999999999999999999999999997211 1 11 12  678


Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      +.|++|||||+|.||+.+|++++++|++|++|+++....     .+... .++++++++||+|++|+|.+++|+++++++
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~  231 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF-VSTPELAAQSDFIVVACSLTPATEGLCNKD  231 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBSHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCcee-CCHHHHHhhCCEEEEeCCCChHHHHhhCHH
Confidence            999999999999999999999999999999999876431     13333 389999999999999999999999999999


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      .++.||+|++|||+|||+++|+++|.++|+++++.||+||||++||+++ +|||++|||+
T Consensus       232 ~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi  291 (330)
T 2gcg_A          232 FFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCV  291 (330)
T ss_dssp             HHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEE
T ss_pred             HHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEE
Confidence            9999999999999999999999999999999999999999999999765 5899999974

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.1e-54  Score=401.23  Aligned_cols=271  Identities=31%  Similarity=0.483  Sum_probs=234.7

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      ||||||++.+.  .+...+.  +++.+++.. .. ..+.+++ .+.++++|++++++..++++++++++|+||+|++.|+
T Consensus         1 m~~~il~~~~~--~~~~~~~--l~~~~~~~~-~~-~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~   73 (333)
T 2d0i_A            1 MRPKVGVLLKM--KREALEE--LKKYADVEI-IL-YPSGEEL-KGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSA   73 (333)
T ss_dssp             CCSEEEECSCC--CHHHHHH--HHTTSEEEE-CC-SCCHHHH-HHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSS
T ss_pred             CCcEEEEECCC--CHHHHHH--HHhcCCEEE-eC-CCCHHHH-HHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCc
Confidence            57899998876  4555555  777777654 22 2233444 4456799999987777899999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcc----cccCCC
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIG----SKLGGK  170 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g----~~l~g~  170 (300)
                      |+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.... .  . ..  |    .+|.|+
T Consensus        74 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~--~-~~--~~~~~~~l~g~  147 (333)
T 2d0i_A           74 GYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-K--I-WT--GFKRIESLYGK  147 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-H--H-HT--TSCCCCCSTTC
T ss_pred             ccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-c--c-cc--CCcccCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999996210 0  0 12  5    789999


Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      +|||||+|.||+.+|++++++|++|++|+++....    .+.. ..++++++++||+|++|+|.+++|+++++++.++.|
T Consensus       148 ~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~m  226 (333)
T 2d0i_A          148 KVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL  226 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhC
Confidence            99999999999999999999999999999987531    1222 348999999999999999999999999999999999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCC-CCC
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXX-XXX  300 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~-nv~  300 (300)
                      |+| ++||+|||.++|+++|.++|++++|+||++|||++||++.+|||++| ||+
T Consensus       227 k~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nvi  280 (333)
T 2d0i_A          227 EGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETV  280 (333)
T ss_dssp             BTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEE
T ss_pred             CCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEE
Confidence            999 99999999999999999999999999999999999998766899999 974

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=8.2e-54  Score=400.07  Aligned_cols=275  Identities=32%  Similarity=0.497  Sum_probs=234.5

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCC-CCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWES-PLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      |++|||++.+.  .+...+.  +++.+++...... ..+.++ +.+.++++|+++++...++++++++++|+||||++.|
T Consensus         1 m~~~il~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~   75 (334)
T 2dbq_A            1 MKPKVFITREI--PEVGIKM--LEDEFEVEVWGDEKEIPREI-LLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYA   75 (334)
T ss_dssp             CCCEEEESSCC--CHHHHHH--HHTTSEEEECCCSSCCCHHH-HHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESS
T ss_pred             CCcEEEEecCC--CHHHHHH--HHhcCCEEEecCCCCCCHHH-HHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECC
Confidence            45789998765  4555555  7777776542222 123334 4455689999998777789999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCC----CcccCCCccccCcccccCC
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRP----RQAAEGDCYSLGIGSKLGG  169 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~----~~~~~~~~~~~~~g~~l~g  169 (300)
                      +|+|+||+++++++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.    ... ...  ..  +.++.|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~-~~~--~~--~~~l~g  150 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWH-PKW--FL--GYDVYG  150 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCC-TTT--TC--CCCCTT
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccc-ccc--cc--ccCCCC
Confidence            999999999999999999999999999999999999999999999999999999995    110 101  12  678999


Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      ++|||||+|.||+.+|++++++|++|++|+++....    .+.. ..++++++++||+|++|+|.+++|+++++++.++.
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~  229 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKL  229 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhc
Confidence            999999999999999999999999999999986541    1222 35899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ||+|++|||+|||.++|+++|.++|++|+|+||++|||++||...+|||++|||+
T Consensus       230 mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi  284 (334)
T 2dbq_A          230 MKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVV  284 (334)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEE
T ss_pred             CCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEE
Confidence            9999999999999999999999999999999999999999993345899999984

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=8.3e-54  Score=403.77  Aligned_cols=245  Identities=24%  Similarity=0.355  Sum_probs=209.4

Q ss_pred             CCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG   95 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G   95 (300)
                      +.|||+...++   ...+.  +++..++..+...+.+. +    .++++|++++++.+++++++++ .++||+|++.|+|
T Consensus         3 mmkIl~~~~~p---~~~~~--~~~~~~v~~~~~~~~~~-~----~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G   71 (381)
T 3oet_A            3 AMKILVDENMP---YAREL--FSRLGEVKAVPGRPIPV-E----ELNHADALMVRSVTKVNESLLS-GTPINFVGTATAG   71 (381)
T ss_dssp             CCEEEEETTST---THHHH--HTTSSEEEEECC---CH-H----HHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSC
T ss_pred             ceEEEECCCCc---HHHHH--HhhCCcEEEeCCCCCCH-H----HHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEcccc
Confidence            35899987763   23333  66667765432222222 2    2478999999877889999999 5779999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEE
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIV  175 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIi  175 (300)
                      +||||+++++++||.|+|+||+++.+||||+++++|++.|+.                          |.+|+|+|||||
T Consensus        72 ~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~--------------------------g~~l~gktvGII  125 (381)
T 3oet_A           72 TDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD--------------------------GFSLRDRTIGIV  125 (381)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT--------------------------TCCGGGCEEEEE
T ss_pred             ccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc--------------------------CCccCCCEEEEE
Confidence            999999999999999999999999999999999999998852                          335889999999


Q ss_pred             ecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChh----hhhcchHHHHhcCCCCcE
Q 022233          176 GLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGV  251 (300)
Q Consensus       176 G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~----t~~li~~~~l~~mk~ga~  251 (300)
                      |+|+||+.+|++|++|||+|++||+..........+.++++++++||+|++|+|++++    |+++|+++.|+.||+|++
T Consensus       126 GlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gai  205 (381)
T 3oet_A          126 GVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAI  205 (381)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEE
T ss_pred             eECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcE
Confidence            9999999999999999999999998643322233467999999999999999999999    999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCC
Q 022233          252 VINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXX  297 (300)
Q Consensus       252 lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~  297 (300)
                      |||+|||++||+++|+++|++|++.||+||||++||+++++||.++
T Consensus       206 lIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~  251 (381)
T 3oet_A          206 LINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV  251 (381)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC
Confidence            9999999999999999999999999999999999998776777654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.7e-53  Score=392.78  Aligned_cols=252  Identities=23%  Similarity=0.294  Sum_probs=218.9

Q ss_pred             eEEEECCCCCCccccchhhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGL   96 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~   96 (300)
                      |||++.++  .+...+.  |++. +++   .          .+.++++|+++++.   .+.++++++|+||+|++.|+|+
T Consensus         2 ~il~~~~~--~~~~~~~--l~~~~~~v---~----------~~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~   61 (303)
T 1qp8_A            2 ELYVNFEL--PPEAEEE--LRKYFKIV---R----------GGDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGL   61 (303)
T ss_dssp             EEECCSCC--CHHHHHH--HHTTCEEE---C----------SSCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCC
T ss_pred             EEEEccCC--CHHHHHH--HHhcCCcc---c----------hhhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCc
Confidence            67887665  4555544  6554 332   1          02346899988753   4679999999999999999999


Q ss_pred             CCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEe
Q 022233           97 NHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVG  176 (300)
Q Consensus        97 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG  176 (300)
                      |+||++++ ++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..   .  . +   +.++.|++|||||
T Consensus        62 d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~--~-~---~~~l~g~~vgIIG  131 (303)
T 1qp8_A           62 DHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR---D--V-E---IPLIQGEKVAVLG  131 (303)
T ss_dssp             TTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C--S-C---CCCCTTCEEEEES
T ss_pred             ccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---C--C-C---CCCCCCCEEEEEc
Confidence            99999985 7999999999999999999999999999999999999999999972   1  1 1   3479999999999


Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +|+||+.+|++++++||+|++|+++.. ..+.....++++++++||+|++|+|++++|+++|+++.++.||+|+++||+|
T Consensus       132 ~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~s  210 (303)
T 1qp8_A          132 LGEIGTRVGKILAALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG  210 (303)
T ss_dssp             CSTHHHHHHHHHHHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECC
Confidence            999999999999999999999999876 2233345689999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHhCCceEEEeeCC-CCCCCCC-CCCCCCCCCC
Q 022233          257 RGPIIDEQELVRCLVQGEIKGAGLDVF-ENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       257 rg~~vd~~aL~~aL~~~~i~~a~LDV~-~~EP~~~-~~L~~~~nv~  300 (300)
                      ||+++|+++|.++|++|+|+||+|||| ++||++. +|||++|||+
T Consensus       211 rg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nvi  256 (303)
T 1qp8_A          211 RAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVV  256 (303)
T ss_dssp             CGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEE
T ss_pred             CCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEE
Confidence            999999999999999999999999999 8899874 5899999984

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=2.2e-52  Score=412.03  Aligned_cols=270  Identities=28%  Similarity=0.427  Sum_probs=236.4

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      +|+|||++.+.  .+...+.  |++.+++.. .. ..+.++ +.+.++++|++++++.+++++++++++|+||||++.|+
T Consensus         3 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~-~~-~~~~~~-~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~   75 (529)
T 1ygy_A            3 SLPVVLIADKL--APSTVAA--LGDQVEVRW-VD-GPDRDK-LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGV   75 (529)
T ss_dssp             CCCEEEECSSC--CGGGGTT--SCSSSEEEE-CC-TTSHHH-HHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSS
T ss_pred             CCcEEEEeCCC--CHHHHHH--HhcCceEEE-cC-CCCHHH-HHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            36799998876  4555555  777677654 22 223344 44456799999998778999999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEE
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGI  174 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgI  174 (300)
                      |+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+   . .|  .  |.+|.|++|||
T Consensus        76 G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~-~~--~--~~~l~g~~vgI  147 (529)
T 1ygy_A           76 GLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---S-SF--S--GTEIFGKTVGV  147 (529)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---G-GC--C--BCCCTTCEEEE
T ss_pred             CcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---c-Cc--C--ccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999972   1 12  2  77899999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCc
Q 022233          175 VGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEG  250 (300)
Q Consensus       175 iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga  250 (300)
                      ||+|+||+++|++|+++|++|++||++....    .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+
T Consensus       148 IG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~  226 (529)
T 1ygy_A          148 VGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV  226 (529)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTE
T ss_pred             EeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCC
Confidence            9999999999999999999999999876321    13333 389999999999999999999999999998999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          251 VVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       251 ~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      ++||+|||+++|+++|+++|++|+++||++|||+.||...+|||++|||+
T Consensus       227 ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi  276 (529)
T 1ygy_A          227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV  276 (529)
T ss_dssp             EEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             EEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence            99999999999999999999999999999999999998777999999974

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=9.2e-53  Score=384.99  Aligned_cols=221  Identities=24%  Similarity=0.329  Sum_probs=200.2

Q ss_pred             ccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHH
Q 022233           60 HAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISA  139 (300)
Q Consensus        60 ~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~  139 (300)
                      .++++|+++++ ..++      ++|+||||++.|+|+|+||+++|++++|.++| ++.++.+||||++++||++.|++..
T Consensus        31 ~~~~ad~li~~-~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~  102 (290)
T 3gvx_A           31 DYYDAEAQVIK-DRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILE  102 (290)
T ss_dssp             SCCCCSEEEES-SCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chhhhhhhhhh-hhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhh
Confidence            34789999984 3333      78999999999999999999999987776666 4788999999999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh
Q 022233          140 SDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA  219 (300)
Q Consensus       140 ~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~  219 (300)
                      +++.+++|.|..   .    +   ..+|+|+||||||+|.||+++|++|++|||+|++|+++..+........+++++++
T Consensus       103 ~~~~~~~g~w~~---~----~---~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~  172 (290)
T 3gvx_A          103 NNELMKAGIFRQ---S----P---TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFR  172 (290)
T ss_dssp             HHHHHHTTCCCC---C----C---CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHH
T ss_pred             hhhHhhhccccc---C----C---ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhh
Confidence            999999999972   1    1   35799999999999999999999999999999999998765544445569999999


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXX  299 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv  299 (300)
                      +||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+  +|||++|||
T Consensus       173 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nv  250 (290)
T 3gvx_A          173 QSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNA  250 (290)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSE
T ss_pred             ccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999997  899999998


Q ss_pred             C
Q 022233          300 X  300 (300)
Q Consensus       300 ~  300 (300)
                      +
T Consensus       251 i  251 (290)
T 3gvx_A          251 I  251 (290)
T ss_dssp             E
T ss_pred             h
Confidence            4

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-50  Score=383.09  Aligned_cols=243  Identities=23%  Similarity=0.356  Sum_probs=206.3

Q ss_pred             eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN   97 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d   97 (300)
                      ||++....+   ...+.  +++.+++......+..     .+.++++|++++++.+++++++++ +|+||+|++.|+|+|
T Consensus         2 kil~~~~~~---~~~~~--~~~~~~v~~~~~~~~~-----~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D   70 (380)
T 2o4c_A            2 RILADENIP---VVDAF--FADQGSIRRLPGRAID-----RAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTD   70 (380)
T ss_dssp             EEEEETTCT---THHHH--HGGGSEEEEECGGGCS-----TTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCST
T ss_pred             EEEEecCch---HHHHH--HHhCCcEEEecCCcCC-----hHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccc
Confidence            688876653   22333  5555565432211111     123478999999877889999999 899999999999999


Q ss_pred             CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEec
Q 022233           98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL  177 (300)
Q Consensus        98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~  177 (300)
                      |||+++++++||.|+|+||+++.+||||++++||++.|++                          +.++.|++|||||+
T Consensus        71 ~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~--------------------------~~~l~g~tvGIIGl  124 (380)
T 2o4c_A           71 HLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR--------------------------GADLAERTYGVVGA  124 (380)
T ss_dssp             TBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH--------------------------TCCGGGCEEEEECC
T ss_pred             hhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh--------------------------hcccCCCEEEEEeC
Confidence            9999999999999999999999999999999999999862                          22478999999999


Q ss_pred             ChhHHHHHHHHHhCCCEEEEECCCCCCC-CCCcccCCHHHHhhcCCEEEEecCCChh----hhhcchHHHHhcCCCCcEE
Q 022233          178 GSIGSLVAKRLDAFGCSISYNSRTKKPS-VSYPFYSNVCELAANCDILIICCGLTAE----THHMINKQVLSALGKEGVV  252 (300)
Q Consensus       178 G~IG~~~A~~l~~~g~~V~~~~~~~~~~-~~~~~~~~l~e~l~~aDvV~l~~p~~~~----t~~li~~~~l~~mk~ga~l  252 (300)
                      |+||+.+|++|+++||+|++|+++.... .+. ...++++++++||+|++|+|++++    |+++++++.|+.||+|++|
T Consensus       125 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gail  203 (380)
T 2o4c_A          125 GQVGGRLVEVLRGLGWKVLVCDPPRQAREPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWL  203 (380)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECHHHHHHSTTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCChhhhccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEE
Confidence            9999999999999999999999765322 222 356899999999999999999999    9999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKELXXXXXX  299 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~~L~~~~nv  299 (300)
                      ||+|||+++|+++|+++|++|+|.+|+||||++||+++++||.. ||
T Consensus       204 IN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~-nv  249 (380)
T 2o4c_A          204 VNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAAR-CL  249 (380)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTT-CS
T ss_pred             EECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccC-CE
Confidence            99999999999999999999999999999999999776677763 75

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.96  E-value=5.9e-32  Score=261.41  Aligned_cols=189  Identities=18%  Similarity=0.201  Sum_probs=163.9

Q ss_pred             CCCcceEE-EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCcccc
Q 022233           83 MPAVRLVM-TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSL  161 (300)
Q Consensus        83 ~p~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  161 (300)
                      +|+++.|+ .+++|+|++  +++.++||.++|+|++++ +|||       +++|++....+.++.| |.+      +  .
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r------~--~  251 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR------A--T  251 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH------H--H
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh------c--c
Confidence            47899998 889999998  899999999999999999 9999       4568888888888888 861      1  1


Q ss_pred             CcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          162 GIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       162 ~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                        +.++.|++|||||+|.||+.+|++++++|++|+++++++...     .++ ...++++++++||+|++|+    .|++
T Consensus       252 --~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~  324 (479)
T 1v8b_A          252 --DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVD  324 (479)
T ss_dssp             --CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSS
T ss_pred             --ccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----Chhh
Confidence              567999999999999999999999999999999999986431     233 3468999999999999995    7789


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHhCCceEEEeeCCCCCCCCCCCCCCC--CCCC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPI-IDEQELVR--CLVQGEIKGAGLDVFENEPDVPKELXXX--XXXX  300 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~--aL~~~~i~~a~LDV~~~EP~~~~~L~~~--~nv~  300 (300)
                      +|+++.|+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .+|||.+  |||+
T Consensus       325 lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv  390 (479)
T 1v8b_A          325 VIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLL  390 (479)
T ss_dssp             SBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBH
T ss_pred             hcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEE
Confidence            999999999999999999999999 99999999  99999998 9999984322  3578877  8874

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.96  E-value=5.5e-32  Score=262.51  Aligned_cols=186  Identities=20%  Similarity=0.216  Sum_probs=157.9

Q ss_pred             CCcceEE-EcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccC
Q 022233           84 PAVRLVM-TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG  162 (300)
Q Consensus        84 p~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~  162 (300)
                      |+++.|+ .+++|+|++  ++++++||.|+|+|++++ +|||+       ++|++....+.++.| |.+        .. 
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~--------~~-  271 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKR--------AT-  271 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHH--------HH-
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhh--------cc-
Confidence            8999998 889999998  889999999999999999 99994       347776666666666 751        11 


Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                       +.++.|++|||||+|.||+.+|+++++||++|+++++++...     .++ ...++++++++||+|++|+    .|+++
T Consensus       272 -g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~l  345 (494)
T 3d64_A          272 -DVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHV  345 (494)
T ss_dssp             -CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCS
T ss_pred             -ccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----Ccccc
Confidence             668999999999999999999999999999999999986432     133 2468999999999999997    67899


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEeeCCCCCCCCC-CCCCCC--CCCC
Q 022233          238 INKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEIKGAGLDVFENEPDVP-KELXXX--XXXX  300 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~-~~L~~~--~nv~  300 (300)
                      |+++.|+.||+|++|||+|||++ ||+++| ++|++|+|+ +++||   ||+++ +|||.+  |||+
T Consensus       346 I~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv  407 (494)
T 3d64_A          346 INHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLV  407 (494)
T ss_dssp             BCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBH
T ss_pred             cCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEE
Confidence            99999999999999999999999 699999 999999997 55555   46654 588888  8874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=1.4e-29  Score=232.00  Aligned_cols=206  Identities=17%  Similarity=0.185  Sum_probs=158.6

Q ss_pred             CCeEEEECCCCCCccccchhhhcc-cCeEEEecCCCCC-------hHHHHHhccCCcEEEEEe----------------C
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSN-KFKFLKAWESPLP-------LDQFLKTHAQSVEAILSS----------------G   71 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-------~~~~l~~~~~~~d~ii~~----------------~   71 (300)
                      +.||++++.........+.  |.+ .+++.....+...       ..+.+.+.++++|+++++                .
T Consensus         5 ~m~i~v~~~~~~~~~~~~~--L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            5 GKHVVIIGGDARQLEIIRK--LSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TCEEEEECBCHHHHHHHHH--HHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             CcEEEEECCCHHHHHHHHH--HHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            4578888765222233333  544 4665442211110       112233445789999975                2


Q ss_pred             CCCCCHHHHccCCCcceEEEcCCCCCCCCh-hHHhhCCeEEEeCC------CCCchhHHHHHHHHHHHHhhchHHHHHHH
Q 022233           72 GAPVTAETLRLMPAVRLVMTTSAGLNHVDI-AECRRRGITVANAG------NVFSEDVADLAVGLLIDLLRNISASDRFV  144 (300)
Q Consensus        72 ~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~-~~~~~~gI~v~n~p------~~~~~~vAE~~l~l~L~~~R~~~~~~~~~  144 (300)
                      ..++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|+|      ++++.+|||++++++|..           
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~-----------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH-----------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh-----------
Confidence            3468999999999999997   89999998 89999999999998      889999999999998862           


Q ss_pred             HhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc--cCCHHHH
Q 022233          145 KQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF--YSNVCEL  217 (300)
Q Consensus       145 ~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~--~~~l~e~  217 (300)
                           .             +.++.|++|||||+|.||+.+|++++++|++|++++|+..+.     .+...  ..+++++
T Consensus       149 -----~-------------~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~  210 (293)
T 3d4o_A          149 -----T-------------DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQE  210 (293)
T ss_dssp             -----C-------------SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHH
T ss_pred             -----c-------------CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHH
Confidence                 1             345889999999999999999999999999999999976431     12222  2578899


Q ss_pred             hhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       218 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      +++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       211 l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          211 LRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             TTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             hcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            9999999999996     6788899999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=3.4e-26  Score=210.03  Aligned_cols=212  Identities=13%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             CCeEEEECCCCCCccccchhhhcc-cCeEEEecCCCCC-------hHHHHHhccCCcEEEEEe----C----------CC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSN-KFKFLKAWESPLP-------LDQFLKTHAQSVEAILSS----G----------GA   73 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-------~~~~l~~~~~~~d~ii~~----~----------~~   73 (300)
                      ..||++++.........+.  |.+ .+++.....++..       ..+.+.+.++++|+|+++    .          ..
T Consensus         7 ~mki~v~~~~~~~~~~~~~--L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            7 GLKIAVIGGDARQLEIIRK--LTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             SCEEEEESBCHHHHHHHHH--HHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             CCEEEEECCCHHHHHHHHH--HHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            3479998775212223333  544 4565432211111       111123445689999872    1          34


Q ss_pred             C--CCHHHHccCCCcceEEEcCCCCCCCC-hhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCC
Q 022233           74 P--VTAETLRLMPAVRLVMTTSAGLNHVD-IAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRP  150 (300)
Q Consensus        74 ~--~~~e~l~~~p~Lk~I~~~~~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~  150 (300)
                      +  ++++.++.+|++|+|+   +|+|++| +++|.++||.|+|+|+++  ++         ++.|+++.+     +|.|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~  145 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIM  145 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHH
T ss_pred             CccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHH
Confidence            5  8999999999999998   8999999 999999999999999974  33         334666544     34453


Q ss_pred             CcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc--cCCHHHHhhcCCE
Q 022233          151 RQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF--YSNVCELAANCDI  223 (300)
Q Consensus       151 ~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~--~~~l~e~l~~aDv  223 (300)
                      ... .    ..  +.++.|++|||||+|.||+.+|++++++|++|++++|+....     .+...  ..++++++++||+
T Consensus       146 ~~~-~----~~--~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDv  218 (300)
T 2rir_A          146 LAI-Q----HT--DYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDI  218 (300)
T ss_dssp             HHH-H----TC--SSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSE
T ss_pred             HHH-H----hc--CCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCE
Confidence            100 0    12  668999999999999999999999999999999999976431     12221  3578999999999


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      |++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       219 Vi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          219 CINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             EEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             EEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            9999996     6788899999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.83  E-value=2.9e-22  Score=194.81  Aligned_cols=177  Identities=21%  Similarity=0.249  Sum_probs=142.6

Q ss_pred             CCcceE-EEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccC
Q 022233           84 PAVRLV-MTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG  162 (300)
Q Consensus        84 p~Lk~I-~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~  162 (300)
                      ++++-+ ..+|+|+|++  .++.++||.++|++++++ +|||+       .+|++....+....+ |.+   .     . 
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r---~-----~-  268 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INR---G-----T-  268 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHH---H-----H-
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHh---c-----c-
Confidence            455544 4789999998  788899999999999998 99994       346665554444444 431   0     0 


Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                       +..+.|++|+|+|+|.||+.+|++++++|++|+++++++...     .++. ..+++++++++|+|+.|++    +.++
T Consensus       269 -~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~  342 (494)
T 3ce6_A          269 -DALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDI  342 (494)
T ss_dssp             -CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCS
T ss_pred             -CCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHH
Confidence             335889999999999999999999999999999999876432     2443 4578899999999999975    4567


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHhCCceEEEeeCCCCCC
Q 022233          238 INKQVLSALGKEGVVINIGRGPI-IDEQELVR-CLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~-aL~~~~i~~a~LDV~~~EP  287 (300)
                      ++++.++.||+|+++||++|+.. +|+.+|.. +|++++|. +++|+|+.+|
T Consensus       343 i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~  393 (494)
T 3ce6_A          343 IMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD  393 (494)
T ss_dssp             BCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT
T ss_pred             HHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC
Confidence            88899999999999999999999 99999998 88888887 6689987644

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.82  E-value=5.6e-21  Score=180.75  Aligned_cols=199  Identities=13%  Similarity=0.131  Sum_probs=150.6

Q ss_pred             CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEE----------eCCCCCchhHHHHHHHHHH
Q 022233           62 QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVA----------NAGNVFSEDVADLAVGLLI  131 (300)
Q Consensus        62 ~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~----------n~p~~~~~~vAE~~l~l~L  131 (300)
                      +++|+|+. ...++++|+....|+..++.....++|..+++++.++||++.          |.|.++  +.||++..+++
T Consensus        66 ~~adii~~-vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~  142 (377)
T 2vhw_A           66 ADADLLLK-VKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAA  142 (377)
T ss_dssp             HHCSEEEC-SSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHH
T ss_pred             ccCCEEEE-eCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHH
Confidence            45787754 456778888888889888888888899999999999999998          666655  56699985554


Q ss_pred             HHh-hchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----
Q 022233          132 DLL-RNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----  205 (300)
Q Consensus       132 ~~~-R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----  205 (300)
                      .+. |++..    .+.|+|..   ..   .   ..++.|++|+|+|+|.||+.+|+.++++|++|+++|+++...     
T Consensus       143 ~~a~r~l~~----~~~g~~~~---~~---~---~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~  209 (377)
T 2vhw_A          143 QVGAYHLMR----TQGGRGVL---MG---G---VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA  209 (377)
T ss_dssp             HHHHHHTSG----GGTSCCCC---TT---C---BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHH----hcCCCccc---cc---C---CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            444 66632    23454431   10   1   236899999999999999999999999999999999876431     


Q ss_pred             -CCCc------ccCCHHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHhCC
Q 022233          206 -VSYP------FYSNVCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG--RGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       206 -~~~~------~~~~l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd~~aL~~aL~~~~  274 (300)
                       .+..      ...+++++++++|+|+.++  |.+ .+.++++++.++.||+|+++||+|  +|+               
T Consensus       210 ~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg---------------  273 (377)
T 2vhw_A          210 EFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG---------------  273 (377)
T ss_dssp             HTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC---------------
T ss_pred             hcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC---------------
Confidence             1221      1235778899999999977  544 678899999999999999999999  432               


Q ss_pred             ceEEEeeCCCC-CCCC-CCCCCCCCCC
Q 022233          275 IKGAGLDVFEN-EPDV-PKELXXXXXX  299 (300)
Q Consensus       275 i~~a~LDV~~~-EP~~-~~~L~~~~nv  299 (300)
                             ||+. ||.+ +.|+|.++||
T Consensus       274 -------v~e~~ep~~~~~~~~~~~~v  293 (377)
T 2vhw_A          274 -------CFEGSRPTTYDHPTFAVHDT  293 (377)
T ss_dssp             -------SBTTCCCBCSSSCEEEETTE
T ss_pred             -------ccccccCCCCCCCEEEECCE
Confidence                   7888 8865 3478888876

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.76  E-value=2e-18  Score=164.43  Aligned_cols=188  Identities=17%  Similarity=0.258  Sum_probs=133.6

Q ss_pred             cEEEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHH---HHHhhchHH
Q 022233           64 VEAILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLL---IDLLRNISA  139 (300)
Q Consensus        64 ~d~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~---L~~~R~~~~  139 (300)
                      +|+|+.. ..+ +++.++.+ |++++|+..+.|+|++|++++.++||+|.+.     +.|+|++.++.   ++..+.+..
T Consensus        73 adiil~v-k~p-~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag  145 (401)
T 1x13_A           73 SEIILKV-NAP-LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAG  145 (401)
T ss_dssp             SSEEECS-SCC-CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHH
T ss_pred             CCeEEEe-CCC-CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHH
Confidence            8887753 333 56778887 7999999999999999999999999999753     45555555553   333333332


Q ss_pred             HHHHHHhCCCC-CcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccC-
Q 022233          140 SDRFVKQWLRP-RQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYS-  212 (300)
Q Consensus       140 ~~~~~~~g~w~-~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~-  212 (300)
                       +..++.+.|. .....+.. .. .| ++.|++|+|+|+|.||..+++.++.+|++|+++|+++...     .+..... 
T Consensus       146 -~~av~~~~~~~~~~~~~~~-~~-~g-~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~  221 (401)
T 1x13_A          146 -YRAIVEAAHEFGRFFTGQI-TA-AG-KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLEL  221 (401)
T ss_dssp             -HHHHHHHHHHCSSCSSCEE-ET-TE-EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC
T ss_pred             -HHHHHHHHHhcccccCCce-ee-cc-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEe
Confidence             2333333321 00000000 01 02 5889999999999999999999999999999999886531     1222111 


Q ss_pred             --------------------------CHHHHhhcCCEEEEe--cCCChhhhhcchHHHHhcCCCCcEEEEcC--CCcccC
Q 022233          213 --------------------------NVCELAANCDILIIC--CGLTAETHHMINKQVLSALGKEGVVINIG--RGPIID  262 (300)
Q Consensus       213 --------------------------~l~e~l~~aDvV~l~--~p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd  262 (300)
                                                ++.+++.++|+|+.+  +|.. .+..+++++.++.||+|+++||+|  ||+.++
T Consensus       222 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~  300 (401)
T 1x13_A          222 DFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCE  300 (401)
T ss_dssp             --------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             cccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcC
Confidence                                      367888999999999  5532 356788999999999999999999  998887


Q ss_pred             H
Q 022233          263 E  263 (300)
Q Consensus       263 ~  263 (300)
                      +
T Consensus       301 ~  301 (401)
T 1x13_A          301 Y  301 (401)
T ss_dssp             T
T ss_pred             c
Confidence            6

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.71  E-value=1.5e-17  Score=158.46  Aligned_cols=179  Identities=18%  Similarity=0.240  Sum_probs=126.1

Q ss_pred             CcEEEEEeCCCCCCHHHHccC----CCcceE-EEcCCCCCCCC-hhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhc
Q 022233           63 SVEAILSSGGAPVTAETLRLM----PAVRLV-MTTSAGLNHVD-IAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN  136 (300)
Q Consensus        63 ~~d~ii~~~~~~~~~e~l~~~----p~Lk~I-~~~~~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~  136 (300)
                      ..+.|+=.+. .++.-+-...    ++++-+ =-+++|+..+. +.+..+.+|+|.|++.....+..|...+..-++...
T Consensus       122 ~p~~ilDdGg-dl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldg  200 (436)
T 3h9u_A          122 YPNMLLDDGG-DLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDG  200 (436)
T ss_dssp             CCSEEEESSS-HHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHH
T ss_pred             CCceEecccc-HHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHH
Confidence            4566663332 2333233333    344433 34577776552 445567899999998766555444444332222222


Q ss_pred             hHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCccc
Q 022233          137 ISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFY  211 (300)
Q Consensus       137 ~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~  211 (300)
                      +      .+.              .  +.++.|++|||+|+|.||+.+|++|+++|++|+++++++...     .+. ..
T Consensus       201 i------~ra--------------t--g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~-~~  257 (436)
T 3h9u_A          201 I------KRA--------------T--DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY-QV  257 (436)
T ss_dssp             H------HHH--------------H--CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EE
T ss_pred             H------HHh--------------c--CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC-ee
Confidence            1      111              1  456899999999999999999999999999999999976431     232 24


Q ss_pred             CCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 022233          212 SNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI-IDEQELVRC  269 (300)
Q Consensus       212 ~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~a  269 (300)
                      .+++|++++||+|+++    ..+.++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       258 ~sL~eal~~ADVVilt----~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          258 LLVEDVVEEAHIFVTT----TGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CCHHHHTTTCSEEEEC----SSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             cCHHHHHhhCCEEEEC----CCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            5899999999999973    46788999999999999999999999997 999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.69  E-value=7e-17  Score=152.93  Aligned_cols=195  Identities=14%  Similarity=0.160  Sum_probs=133.6

Q ss_pred             ccCCcEEEEEeCCCCC----CHHHHccCC-CcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHh
Q 022233           60 HAQSVEAILSSGGAPV----TAETLRLMP-AVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLL  134 (300)
Q Consensus        60 ~~~~~d~ii~~~~~~~----~~e~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~  134 (300)
                      .++++|+|+.. ..++    +++.++.++ ++++|+....+.|+.+++++.++||.++|. +...+.+++..+. +|+..
T Consensus        64 ~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~  140 (384)
T 1l7d_A           64 ALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQ  140 (384)
T ss_dssp             HHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHH
T ss_pred             hhcCCCEEEEe-cCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHH
Confidence            34679988864 4465    788889886 699999999999999999999999999985 2222222222232 23333


Q ss_pred             hchHHHHHHHHhCCCCCcccCCCccccCcc-cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC
Q 022233          135 RNISASDRFVKQWLRPRQAAEGDCYSLGIG-SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY  208 (300)
Q Consensus       135 R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g-~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~  208 (300)
                      +.+ ..+..+..+.|.-....+.+  + .+ .++.|++|+|+|+|.||..+++.++.+|++|+++|+++...     .+.
T Consensus       141 a~~-ag~~av~~~~~~~~~~~~~~--~-~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga  216 (384)
T 1l7d_A          141 SNL-AGYRAVIDGAYEFARAFPMM--M-TAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG  216 (384)
T ss_dssp             HHH-HHHHHHHHHHHHCSSCSSCE--E-ETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             HHH-HHHHHHHHHHHHhhhcccch--h-ccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            332 22233333333200000001  1 02 36899999999999999999999999999999999886531     122


Q ss_pred             ccc--CC---------------------------HHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC-
Q 022233          209 PFY--SN---------------------------VCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG-  256 (300)
Q Consensus       209 ~~~--~~---------------------------l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s-  256 (300)
                      ...  ..                           +.++++++|+|+.++  |..+ +.++++++.++.||+|+++||++ 
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~  295 (384)
T 1l7d_A          217 KFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAV  295 (384)
T ss_dssp             EECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             eEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEec
Confidence            111  01                           678889999999887  4332 45678899999999999999999 


Q ss_pred             -CCcccC
Q 022233          257 -RGPIID  262 (300)
Q Consensus       257 -rg~~vd  262 (300)
                       ||+.++
T Consensus       296 ~~gg~~~  302 (384)
T 1l7d_A          296 EAGGNCP  302 (384)
T ss_dssp             GGTCSST
T ss_pred             CCCCCee
Confidence             886653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.66  E-value=1.7e-16  Score=151.08  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             CcceE-EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccC
Q 022233           85 AVRLV-MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG  162 (300)
Q Consensus        85 ~Lk~I-~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~  162 (300)
                      +++-+ =-+++|+-.+ -+.......+++.|+.+    ++..+-+-....+.+.+.....  |.              . 
T Consensus       183 ~i~G~~EeTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~--Ra--------------t-  241 (464)
T 3n58_A          183 AIKGVTEETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIR--RG--------------T-  241 (464)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHH--HH--------------H-
T ss_pred             hccceeeccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHH--Hh--------------c-
Confidence            34433 3456776654 22333456788888865    4444444444443333222211  11              1 


Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                       +.++.|++++|+|+|.||+.+|+++++||++|+++++++...     .++. ..++++++++||+|+++.    .|+++
T Consensus       242 -g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~LeElL~~ADIVv~at----gt~~l  315 (464)
T 3n58_A          242 -DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE-VVTLDDAASTADIVVTTT----GNKDV  315 (464)
T ss_dssp             -CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECC----SSSSS
T ss_pred             -CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce-eccHHHHHhhCCEEEECC----CCccc
Confidence             456999999999999999999999999999999998865321     2332 458999999999999864    46889


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233          238 INKQVLSALGKEGVVINIGRGPI-IDEQELVR  268 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~  268 (300)
                      |+++.|+.||+|++|||+|||.+ +|.++|.+
T Consensus       316 I~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          316 ITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             BCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             cCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            99999999999999999999998 99999974

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.64  E-value=2e-16  Score=149.05  Aligned_cols=204  Identities=14%  Similarity=0.175  Sum_probs=127.6

Q ss_pred             ccCCcEEEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEE---eCCCC-Cc----hhHHHHHH--H
Q 022233           60 HAQSVEAILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVA---NAGNV-FS----EDVADLAV--G  128 (300)
Q Consensus        60 ~~~~~d~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~---n~p~~-~~----~~vAE~~l--~  128 (300)
                      .+ ++|+|+. ...++.++ ++.+ |++++|+....+.|..+++++.++||++.   +.+.. ..    .++++.+-  +
T Consensus        63 ~~-~ad~il~-vk~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~a  139 (369)
T 2eez_A           63 AW-GAEMVVK-VKEPLPEE-YGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMA  139 (369)
T ss_dssp             HT-TSSEEEC-SSCCCGGG-GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHH
T ss_pred             ee-cCCEEEE-ECCCCHHH-HhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHH
Confidence            44 7898774 34455444 6665 78999999999999999999999999998   44432 11    34444443  3


Q ss_pred             HHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---
Q 022233          129 LLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---  205 (300)
Q Consensus       129 l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---  205 (300)
                      .++++ +.+.....  .++.|.    .    .   ..++.+++|+|+|.|.||+.+|+.++.+|++|+++++++...   
T Consensus       140 v~~a~-~~l~~~~~--g~~~~~----~----~---~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          140 PQVGA-QFLEKPKG--GRGVLL----G----G---VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             HHHHH-HHTSGGGT--SCCCCT----T----C---BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             HHHHH-HHHHHhcC--CCceec----C----C---CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            33332 22221100  011121    0    1   236899999999999999999999999999999999875421   


Q ss_pred             ---CCCc------ccCCHHHHhhcCCEEEEecCCCh-hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          206 ---VSYP------FYSNVCELAANCDILIICCGLTA-ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       206 ---~~~~------~~~~l~e~l~~aDvV~l~~p~~~-~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                         .+..      ...+++++++++|+|+.+++... .+..++.++.++.||+|+++||++-.             .|  
T Consensus       206 ~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g--  270 (369)
T 2eez_A          206 DDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG--  270 (369)
T ss_dssp             HHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------
T ss_pred             HHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC--
Confidence               1211      12356788899999999998765 57788899999999999999999822             12  


Q ss_pred             eEEEeeCCCCCCCC-CCCCCCCCCC
Q 022233          276 KGAGLDVFENEPDV-PKELXXXXXX  299 (300)
Q Consensus       276 ~~a~LDV~~~EP~~-~~~L~~~~nv  299 (300)
                       |+ +||+  ||.+ +.|++..+||
T Consensus       271 -g~-~d~~--ep~~~~~~~~~~~~v  291 (369)
T 2eez_A          271 -GC-VETI--RPTTHAEPTYVVDGV  291 (369)
T ss_dssp             -------------------CEETTE
T ss_pred             -CC-CCcc--cCCCCCCCEEEECCE
Confidence             44 9998  5643 3467766665

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.60  E-value=1.5e-17  Score=158.80  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=98.7

Q ss_pred             ccc-cCCCEEEEEecChhHHHHHHHHHh-CCCEEEEECCCCCCCCCCcccCCHHHHhhcCCE-EEEecCCChhhhhcchH
Q 022233          164 GSK-LGGKRVGIVGLGSIGSLVAKRLDA-FGCSISYNSRTKKPSVSYPFYSNVCELAANCDI-LIICCGLTAETHHMINK  240 (300)
Q Consensus       164 g~~-l~g~~vgIiG~G~IG~~~A~~l~~-~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDv-V~l~~p~~~~t~~li~~  240 (300)
                      |.+ |+|+||||+|+|+||+.+|++|++ |||+|+++++....... ....+++++++.+|. .++ +|+ ++|++ |+.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~-~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN-PDGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEE-EEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccC-ccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            556 999999999999999999999999 99999988543221100 011267777765553 223 566 56777 788


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC--CCCCCCCCC
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK--ELXXXXXXX  300 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~~--~L~~~~nv~  300 (300)
                      +.|..||+ .++||++||.+||+++ +++|+.+.|.+++     +||++++  +||+++||+
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~  336 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGIL  336 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCE
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEE
Confidence            88899988 5999999999999999 6999999999887     8998653  799999874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.58  E-value=2.9e-15  Score=142.44  Aligned_cols=156  Identities=17%  Similarity=0.302  Sum_probs=109.8

Q ss_pred             CcceE-EEcCCCCCCC-ChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccC
Q 022233           85 AVRLV-MTTSAGLNHV-DIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG  162 (300)
Q Consensus        85 ~Lk~I-~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~  162 (300)
                      +++-+ =-+++|+-.+ .+....+..++|.|+.+....+--|-..+.--++.    ..   +++.             . 
T Consensus       156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~----~g---i~ra-------------t-  214 (435)
T 3gvp_A          156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESIL----DG---LKRT-------------T-  214 (435)
T ss_dssp             TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHH----HH---HHHH-------------H-
T ss_pred             hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHH----HH---HHHh-------------h-
Confidence            44433 3456776554 23344457899999977555443332222111111    11   1110             0 


Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC-----CCCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~-----~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                       +..+.|++|+|+|+|.||+.+|++|+++|++|+++++++..     ..++ ...++++++++||+|+++    +.|.++
T Consensus       215 -~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~l  288 (435)
T 3gvp_A          215 -DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNV  288 (435)
T ss_dssp             -CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCS
T ss_pred             -CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCccc
Confidence             44689999999999999999999999999999999987532     1232 246899999999999995    457889


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 022233          238 INKQVLSALGKEGVVINIGRGPI-IDEQELV  267 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~-vd~~aL~  267 (300)
                      |+++.|+.||+|+++||+|||.+ +|.++|.
T Consensus       289 I~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          289 VTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             BCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             CCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            99999999999999999999998 7877764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.55  E-value=1.5e-14  Score=132.39  Aligned_cols=110  Identities=16%  Similarity=0.233  Sum_probs=93.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      ++|||||+|.||..||++|...|++|++|||+++...     +.....++.|+++.||+|++++|..+.++.++....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            5899999999999999999999999999999876532     44567899999999999999999988888888888999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      .+++|.++||+|...+-+.+.+.+.+++.++.  .+|
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~ld  120 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVG  120 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eec
Confidence            99999999999999999999999999998874  355

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.55  E-value=5.1e-15  Score=135.73  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH--HH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK--QV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~--~~  242 (300)
                      ++||+||+|.||..||++|...|++|++|||++++.     .++....++.|+++.||+|++|+|..++++.++..  .+
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            589999999999999999999999999999987542     25666789999999999999999999998887743  36


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      ++.+++|.++||+|+..+-+...+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999998874  4663

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.46  E-value=6e-14  Score=128.70  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      .++..++|||||+|.||+.+|++|...|++|++|||+++..     .+.....++++++++||+|++++|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            35667899999999999999999999999999999986532     1444567899999999999999998877887775


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++.+..+++|.++||++++.+.+.+++.+.+++..+.
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            3234567899999999999999999999999887764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.45  E-value=1e-13  Score=127.91  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ....++|||||+|.||+.+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            3567899999999999999999999999999999986531     24555679999999999999999987777776643


Q ss_pred             -HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          241 -QVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       241 -~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                       ..++.+++|.++||++++.+.+.+.+.+.+++..+..
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence             5677899999999999999999999999999877653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.45  E-value=1.3e-13  Score=126.69  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc-
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMI-  238 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li-  238 (300)
                      .....++|||||+|.||..+|+.|...|++|.+|||+++..     .+.....++++++++||+|++++|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            34566899999999999999999999999999999987643     244556789999999999999999877777666 


Q ss_pred             -hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          239 -NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       239 -~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       ..++++.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence             24567789999999999999999999999999887664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.44  E-value=1.9e-13  Score=124.78  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=93.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .++|||||+|.||..+|+.|...|++|.+||++++...     +.....+++++++ ||+|++++|..+.++.++ +++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999999999999876532     4455678999999 999999999877877777 6788


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      +.+++|.++||+++..+...+.+.+.+.+..+..
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~  126 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHI  126 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEE
Confidence            8899999999999999999999999998876643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=3.5e-13  Score=123.93  Aligned_cols=136  Identities=13%  Similarity=0.158  Sum_probs=93.3

Q ss_pred             HHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC--CC-----CCCCcccCC
Q 022233          142 RFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK--KP-----SVSYPFYSN  213 (300)
Q Consensus       142 ~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~--~~-----~~~~~~~~~  213 (300)
                      +..+.+.|.   ..+.+ +.  ......++|||||+|.||..+|+.|...|+ +|.+||+++  ..     ..+.....+
T Consensus         3 ~~~~~~~~~---~~~~~-~~--~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~   76 (312)
T 3qsg_A            3 HHHHHSSGV---DLGTE-NL--YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKAS   76 (312)
T ss_dssp             ----------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSC
T ss_pred             ccccccccc---ccCcc-cc--cccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCC
Confidence            445677776   23333 32  223456799999999999999999999999 999999973  21     124455678


Q ss_pred             HHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEee--CCCCCC
Q 022233          214 VCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG--EIKGAGLD--VFENEP  287 (300)
Q Consensus       214 l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~--~i~~a~LD--V~~~EP  287 (300)
                      +++++++||+|++++|.....+  +-.++.+.++++.++||+++..+....++.+.+.+.  .+.  .+|  |+.++|
T Consensus        77 ~~e~~~~aDvVi~~vp~~~~~~--~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           77 VAEVAGECDVIFSLVTAQAALE--VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HHHHHHHCSEEEECSCTTTHHH--HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             HHHHHhcCCEEEEecCchhHHH--HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            9999999999999999877665  236778889999999999999999999999999876  443  344  455443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.43  E-value=4.1e-13  Score=125.91  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=98.6

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcC---CEEEEecCCChhhhhcc
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANC---DILIICCGLTAETHHMI  238 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~a---DvV~l~~p~~~~t~~li  238 (300)
                      +.+++|||||+|.||..+|++|...|++|.+|||+++..     .+.....+++|+++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            668899999999999999999999999999999986531     2445567899999999   9999999987 777776


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                       ..+++.+++|.+|||++++.+.+...+.+.+.+..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             5778889999999999999999999999999998886555555543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.43  E-value=2.1e-13  Score=123.61  Aligned_cols=107  Identities=21%  Similarity=0.346  Sum_probs=92.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||+.+|+.|...|++|++|+|+++..     .+.....++++++++||+|++++|....++.++.  +++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999987643     2445567899999999999999998777777762  566


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .+.+++|.++||+++..+.+.+.+.+.+++..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7889999999999999999999999999887664

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.42  E-value=6.9e-15  Score=140.14  Aligned_cols=165  Identities=19%  Similarity=0.245  Sum_probs=121.8

Q ss_pred             CCcceEEEcCCCCCCCChhHHh-----hCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCc
Q 022233           84 PAVRLVMTTSAGLNHVDIAECR-----RRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDC  158 (300)
Q Consensus        84 p~Lk~I~~~~~G~d~id~~~~~-----~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~  158 (300)
                      +.++.|...++|+|++++.++.     ++++.++|.+|. ..+++++.+.+++.+.|++...... ..+.|....  ...
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~--~av  155 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGS--AAV  155 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHH--HHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHH--HHH
Confidence            4688899999999999999887     889999999887 4689999999999999988665332 233443100  000


Q ss_pred             cccCc--ccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC------CCCc--ccCCHHHHhhcCCEEEEe
Q 022233          159 YSLGI--GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS------VSYP--FYSNVCELAANCDILIIC  227 (300)
Q Consensus       159 ~~~~~--g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~------~~~~--~~~~l~e~l~~aDvV~l~  227 (300)
                       ....  ..++.|++|+|||+|.||+.+++.|+.+|+ +|++++|+....      .+..  ...++.+++.++|+|+.|
T Consensus       156 -~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~a  234 (404)
T 1gpj_A          156 -ELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSA  234 (404)
T ss_dssp             -HHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEEC
T ss_pred             -HHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEc
Confidence             0000  014789999999999999999999999999 999999986432      1222  134678889999999999


Q ss_pred             cCCChhhhhcchHHHHhc--C----CCCcEEEEcC
Q 022233          228 CGLTAETHHMINKQVLSA--L----GKEGVVINIG  256 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~--m----k~ga~lIn~s  256 (300)
                      +|.+   ..+++.+.++.  |    +++.++||++
T Consensus       235 t~~~---~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          235 TAAP---HPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             CSSS---SCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cCCC---CceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            8744   45667777776  4    3567788877

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.40  E-value=2.3e-13  Score=123.39  Aligned_cols=107  Identities=20%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||..+|+.|...|++|++|||+++...     +.....++++++++||+|++++|..+.++.++.  +.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4899999999999999999999999999999876432     444567899999999999999998777776662  456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++.+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6789999999999999999999999999887664

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.36  E-value=2.8e-13  Score=123.89  Aligned_cols=108  Identities=22%  Similarity=0.170  Sum_probs=91.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-cCCHHHHhhcCCEEEEecCCChhhhhcch--H
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-YSNVCELAANCDILIICCGLTAETHHMIN--K  240 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~  240 (300)
                      .++|||||+|.||..+|+.|...|++|.+|||+++..     .+... ..+++|++++||+|++++|....++.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            5789999999999999999999999999999986532     23444 57889999999999999998777776653  4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          241 QVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++++.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            566789999999999999999999999999887664

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.32  E-value=3.6e-12  Score=117.47  Aligned_cols=115  Identities=12%  Similarity=0.076  Sum_probs=93.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC------------CCCcccC-CHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS------------VSYPFYS-NVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------------~~~~~~~-~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .++|||||+|.||..+|+.|...| ++|++||+++...            .+.  .. ++++++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            478999999999999999999999 9999999986210            122  45 7889999999999999987766


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      +.+  .++.+.+++|.++||+++..+...+.+.+.+++..+....--|+.++|
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            643  678888999999999999999999999999988766433223555433

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.30  E-value=6.4e-12  Score=122.02  Aligned_cols=115  Identities=16%  Similarity=0.181  Sum_probs=95.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CC--cccCCHHHHhh---cCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SY--PFYSNVCELAA---NCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~--~~~~~l~e~l~---~aDvV~l~~p~~~~t~  235 (300)
                      .++|||||+|.||..+|++|...|++|.+|||+++...        +.  ....+++|+++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999875311        11  12468999887   4999999999988888


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      .++ .++.+.|++|.++||++++...+...+.+.+.+..+.....-|..
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            877 578889999999999999999999999999998887654444443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.29  E-value=2.9e-12  Score=114.80  Aligned_cols=174  Identities=17%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             ChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHH
Q 022233           52 PLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLI  131 (300)
Q Consensus        52 ~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L  131 (300)
                      ++.+.+......++++.+  +.|+.++++..++++.-++....|+|.++.    +.|-    ..+++++.     .+++.
T Consensus        42 ~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~ntd~-----~g~~~  106 (263)
T 2d5c_A           42 ALPGRLKEVRRAFRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGFNTDA-----PGFLE  106 (263)
T ss_dssp             GHHHHHHHHHHHCSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEECCHH-----HHHHH
T ss_pred             HHHHHHHhccccCceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEeCCCH-----HHHHH
Confidence            344544432212344444  357888999999999999999999999975    3442    22344432     24333


Q ss_pred             HHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----
Q 022233          132 DLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----  206 (300)
Q Consensus       132 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----  206 (300)
                      ++.|.                           +.++.| +++|||+|.||+++|+.|...|++|.+++|+.+...     
T Consensus       107 ~l~~~---------------------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~  158 (263)
T 2d5c_A          107 ALKAG---------------------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE  158 (263)
T ss_dssp             HHHHT---------------------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             HHHHh---------------------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            33210                           224778 999999999999999999999999999999864311     


Q ss_pred             -CCcccCCHHHHhhcCCEEEEecCCCh--hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          207 -SYPFYSNVCELAANCDILIICCGLTA--ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       207 -~~~~~~~l~e~l~~aDvV~l~~p~~~--~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                       +.. ..+++++ +++|+|++++|...  .+...+.   .+.+++|.+++|++.+. .+. .|.+++++..+
T Consensus       159 ~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          159 FGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGL  223 (263)
T ss_dssp             HTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTC
T ss_pred             hccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcC
Confidence             222 4577888 99999999999773  3334443   46789999999999984 444 47787777655

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.26  E-value=4e-12  Score=112.85  Aligned_cols=90  Identities=14%  Similarity=0.318  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC--------------C------CCCcccCCHHHHhhcCCE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP--------------S------VSYPFYSNVCELAANCDI  223 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~--------------~------~~~~~~~~l~e~l~~aDv  223 (300)
                      ..++.+++|||||+|.||+++|+.|...|++|++|+|+++.              .      .+.....++.|++++||+
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDv   93 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAEL   93 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSE
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCE
Confidence            56799999999999999999999999999999999998653              0      122334678899999999


Q ss_pred             EEEecCCChhhhhcchHHH-HhcCCCCcEEEEcC
Q 022233          224 LIICCGLTAETHHMINKQV-LSALGKEGVVINIG  256 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~-l~~mk~ga~lIn~s  256 (300)
                      |++++|...... .+. +. ...+ +|.++||++
T Consensus        94 Vilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           94 VVNATEGASSIA-ALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             EEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECC
T ss_pred             EEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECC
Confidence            999999765544 232 33 3344 799999999

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.23  E-value=1.3e-11  Score=119.87  Aligned_cols=110  Identities=19%  Similarity=0.282  Sum_probs=91.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHHHhhc---CCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCELAAN---CDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvV~l~~p~~~~  233 (300)
                      ....++|||||+|.||+.+|++|...|++|.+|+|+++...         +.....+++++++.   +|+|++++|..+.
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            35678999999999999999999999999999999864311         33345689999887   9999999998878


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++.++ +++.+.+++|.+|||++.|...+...+.+.+.+..+.
T Consensus        92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            88887 4677889999999999999999999999999876554

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.23  E-value=2e-11  Score=110.36  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH--HH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK--QV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~--~~  242 (300)
                      ++|+|||+|.||+.+|+.|...|++|.+|+ +++..     .+.....+++++++++|+|++++|...+++.++..  ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999998 65542     13444578999999999999999987767766542  45


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .+.+++|.++|++++|.+.+.+.+.+.+.+..+
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999999988888999999987544

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.22  E-value=1.7e-11  Score=111.13  Aligned_cols=106  Identities=19%  Similarity=0.306  Sum_probs=88.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|+|||+|.||+.+|+.|...|++|.+|+++++..     .+.....+++++++++|+|++++|....++.++.  +++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999876431     1344456899999999999999998777776663  356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .+.+++|.++||++.|...+.+.|.+.+.+..+
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            677899999999999998888899999887554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.21  E-value=2.8e-11  Score=109.83  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQ  241 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~  241 (300)
                      .++|+|||+|.||+.+|+.|...|++|.+|+++++..     .+.....+++++++++|+|++++|....++.++.  .+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            3689999999999999999999999999999875421     2344456899999999999999998777777774  35


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      +.+.+++|.++|++++|...+.+.|.+.+.+..+
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            6677899999999999987788899998887544

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.20  E-value=2.8e-11  Score=112.93  Aligned_cols=103  Identities=21%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhh-cCCEEEEecCCChhhhhcch
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAA-NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li~  239 (300)
                      +|.||+|+|+|+|+||+.+|++|+.+|++|+++|++....     .+.. +.+.++++. .||+++-|     ++.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            6899999999999999999999999999999999764311     1222 336778888 89999853     5788999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++.++.|| ..+++|.+++++.++++ .++|++++|.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999888 6999999885

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.20  E-value=1.6e-10  Score=109.46  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-----------------c------------c
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-----------------F------------Y  211 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-----------------~------------~  211 (300)
                      .+.+.+|+|+|+|.||..+|+.++++|++|+++|+++...     .+..                 +            .
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            5889999999999999999999999999999999886431     1111                 0            1


Q ss_pred             CCHHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC--CCcccCH
Q 022233          212 SNVCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG--RGPIIDE  263 (300)
Q Consensus       212 ~~l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd~  263 (300)
                      .++.+++++||+|+.++  |.. ....+++++.++.||+|+++||+|  +|+.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            25788999999999875  433 356789999999999999999999  8887654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.19  E-value=5.4e-11  Score=116.08  Aligned_cols=107  Identities=17%  Similarity=0.232  Sum_probs=91.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCcccCCHHHHhhc---CCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFYSNVCELAAN---CDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~  235 (300)
                      ..+|||||+|.||+.+|++|...|++|.+|+|+++..          .+.....+++++++.   +|+|++++|..+.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            4589999999999999999999999999999986431          123345689998887   999999999888888


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .++ +++.+.+++|.+|||++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            887 5677889999999999999998999999999876554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.18  E-value=3.2e-11  Score=109.18  Aligned_cols=104  Identities=18%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH--HH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK--QV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~--~~  242 (300)
                      ++|+|||+|.||+.+|+.|...|++|.+|+|+++..     .+.....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            479999999999999999999999999999976531     23444568999999999999999988777776643  24


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++.+++|.++|+++...+.+.+.+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5678999999999888887777887877664

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.16  E-value=2.6e-11  Score=109.51  Aligned_cols=176  Identities=16%  Similarity=0.201  Sum_probs=118.0

Q ss_pred             CChHHHHHhcc-CCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHH
Q 022233           51 LPLDQFLKTHA-QSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGL  129 (300)
Q Consensus        51 ~~~~~~l~~~~-~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l  129 (300)
                      +++.+++.... .+++++.+.  .|+.++++..+..+.-.+....++|.++.    +.|-.    .|+|++..     ++
T Consensus        52 ~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~  116 (275)
T 2hk9_A           52 EELKKAFEGFKALKVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GF  116 (275)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HH
T ss_pred             HHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HH
Confidence            34555554321 256677764  57778888888888888888888888864    34422    23343322     33


Q ss_pred             HHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----
Q 022233          130 LIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----  205 (300)
Q Consensus       130 ~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----  205 (300)
                      +.++.+          .                 +.++.|++++|||.|.||+++|+.|...|++|.+++|+.+..    
T Consensus       117 ~~~l~~----------~-----------------~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          117 LKSLKS----------L-----------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             HHHHHH----------H-----------------CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHT
T ss_pred             HHHHHH----------h-----------------CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            333321          1                 223668899999999999999999999999999999985421    


Q ss_pred             --CCCcccCCHHHHhhcCCEEEEecCCChh--hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          206 --VSYPFYSNVCELAANCDILIICCGLTAE--THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       206 --~~~~~~~~l~e~l~~aDvV~l~~p~~~~--t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                        .+.....+++++++++|+|++++|....  +...++   ++.+++|.+++|++.   .. ..+.+..++..+
T Consensus       170 ~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~~a~~~g~  236 (275)
T 2hk9_A          170 QKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLKKAKEKGA  236 (275)
T ss_dssp             TTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHHHHHHTTC
T ss_pred             HHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHHHHHHCcC
Confidence              1222334788899999999999997642  223443   456899999999998   33 345555555444

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.16  E-value=5.9e-11  Score=108.69  Aligned_cols=107  Identities=20%  Similarity=0.320  Sum_probs=87.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH--H
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK--Q  241 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~--~  241 (300)
                      -++|+|||+|.||+.+|+.|...|++|.+++++++..     .+.....+++++++++|+|++++|....++.++..  .
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            3689999999999999999999999999999976542     13344568889999999999999977777666543  2


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .++.++++.++||++++.....+.+.+.+....+
T Consensus       110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            3567899999999999888888889988866544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.16  E-value=5.7e-11  Score=109.36  Aligned_cols=105  Identities=18%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--cccCCHHH-HhhcCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSY--PFYSNVCE-LAANCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~e-~l~~aDvV~l~~p~~~~t~  235 (300)
                      ++..++|||||+|.||+++|+.|+..|+  +|.+||++++..     .+.  ....++++ ++++||+|++++|... +.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~  108 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FR  108 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HH
Confidence            3445899999999999999999999999  999999986431     122  23467888 8999999999999764 34


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .++ +++...++++++++|++.......+++.+.+..
T Consensus       109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~  144 (314)
T 3ggo_A          109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK  144 (314)
T ss_dssp             HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC
Confidence            444 567788999999999988776556677776654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.15  E-value=1.3e-10  Score=106.09  Aligned_cols=91  Identities=22%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      .++|+||| +|.||..+|+.|+..|++|.++++++.        .++.+++++||+|++++|... +..++ +++...++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDvVilavp~~~-~~~vl-~~l~~~l~   90 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVVIVSVPINL-TLETI-ERLKPYLT   90 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEEEECSCGGG-HHHHH-HHHGGGCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCEEEEeCCHHH-HHHHH-HHHHhhcC
Confidence            46899999 999999999999999999999998653        257789999999999999655 66666 45667799


Q ss_pred             CCcEEEEcCCCcccCHHHHHHH
Q 022233          248 KEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      ++++++|+++......+++.+.
T Consensus        91 ~~~iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           91 ENMLLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             TTSEEEECCSCCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHh
Confidence            9999999988765444555444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.14  E-value=5.3e-11  Score=111.89  Aligned_cols=181  Identities=10%  Similarity=0.119  Sum_probs=113.3

Q ss_pred             cEEEEEeCCCCCCHHHHccC-CCcceEEEcCCCCCCCChhHHhhCCeEEEeC---CCCC-ch------hHHHHHHHHHHH
Q 022233           64 VEAILSSGGAPVTAETLRLM-PAVRLVMTTSAGLNHVDIAECRRRGITVANA---GNVF-SE------DVADLAVGLLID  132 (300)
Q Consensus        64 ~d~ii~~~~~~~~~e~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---p~~~-~~------~vAE~~l~l~L~  132 (300)
                      +|+|+.-  .+.+.+-++.+ |+-.+|...-...|.=-++++.++||....-   |... +.      +.||.+=     
T Consensus        85 adiIlkV--k~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG-----  157 (381)
T 3p2y_A           85 ADVVVKV--NPPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG-----  157 (381)
T ss_dssp             SSEEECS--SCCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH-----
T ss_pred             CCEEEEe--CCCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH-----
Confidence            5666632  23455556666 4555565554444444467788999998652   3211 11      2222221     


Q ss_pred             HhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CC
Q 022233          133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VS  207 (300)
Q Consensus       133 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~  207 (300)
                       ++-......  .-+...     +..  +..-..+.+++|+|||+|.||..+|+.++++|++|+++|+++...     .+
T Consensus       158 -y~Av~~aa~--~l~~~~-----~~l--~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lG  227 (381)
T 3p2y_A          158 -YKAVLLGAS--LSTRFV-----PML--TTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVG  227 (381)
T ss_dssp             -HHHHHHHHH--HCSSCS-----SCE--ECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTT
T ss_pred             -HHHHHHHHH--Hhhhhh-----hhh--hcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence             111111111  111111     000  101135789999999999999999999999999999999986531     12


Q ss_pred             Ccc-------------------------cCCHHHHhhcCCEEEEec--CCChhhhhcchHHHHhcCCCCcEEEEcC--CC
Q 022233          208 YPF-------------------------YSNVCELAANCDILIICC--GLTAETHHMINKQVLSALGKEGVVINIG--RG  258 (300)
Q Consensus       208 ~~~-------------------------~~~l~e~l~~aDvV~l~~--p~~~~t~~li~~~~l~~mk~ga~lIn~s--rg  258 (300)
                      ...                         ..++.+++++||+|+.++  |.. .+..+++++.++.||+|+++||+|  +|
T Consensus       228 a~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA~d~G  306 (381)
T 3p2y_A          228 AQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLAGETG  306 (381)
T ss_dssp             CEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGT
T ss_pred             CeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEeCCCC
Confidence            111                         125778999999999886  432 356789999999999999999998  77


Q ss_pred             cccC
Q 022233          259 PIID  262 (300)
Q Consensus       259 ~~vd  262 (300)
                      +.+.
T Consensus       307 G~~e  310 (381)
T 3p2y_A          307 GNCE  310 (381)
T ss_dssp             CSBT
T ss_pred             Cccc
Confidence            7665

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.14  E-value=5.3e-11  Score=107.23  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      ++|+|||+|.||+.+|+.|.. |++|.+|+++++...     +..... ++++++++|+|++++|....++.++ +++.+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999999765321     222233 7788899999999999776677665 56667


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .+++|.++||++.+...+.+.+.+.+.+..+
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            8999999999999998888999999987544

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.13  E-value=1.1e-10  Score=113.63  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------CCCcccCCHHHHhh---cCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------VSYPFYSNVCELAA---NCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~~~~~~~l~e~l~---~aDvV~l~~p~~~~t~~  236 (300)
                      ++|||||+|.||+.+|..|...|++|.+|+|+++..          .+.....+++++++   ++|+|++++|..+.++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            589999999999999999999999999999976421          22334568888875   89999999998877887


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      ++ .++.+.+++|.+|||++.|...+...+.+.+.+..+.....-|
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv  127 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCC
Confidence            77 4677789999999999999988888898888876554333333

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.12  E-value=6.2e-11  Score=115.02  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=91.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHHHhhc---CCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCELAAN---CDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvV~l~~p~~~~t~~l  237 (300)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++...         +.....+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            5899999999999999999999999999999754310         23345689998887   99999999988788877


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      + +++.+.+++|.+|||++.|...+...+.+.+.+..+.....-|
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv  129 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGV  129 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCC
Confidence            7 4677889999999999999988888999988776554333333

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.11  E-value=8.1e-11  Score=114.33  Aligned_cols=108  Identities=21%  Similarity=0.283  Sum_probs=89.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CC-------CcccCCHHHHhhc---CCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VS-------YPFYSNVCELAAN---CDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~-------~~~~~~l~e~l~~---aDvV~l~~p~~~~  233 (300)
                      ++|||||+|.||+.+|.+|...|++|.+|+|+++..      .+       .....+++++++.   +|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            479999999999999999999999999999975421      12       2335688888874   9999999998877


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      ++.++ +++.+.+++|.++||++.|...+.+.+.+.+.+..+...
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v  125 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFL  125 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEE
Confidence            77777 467778999999999999998888899999987655433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.10  E-value=1.7e-10  Score=104.39  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C--------------CcccCCHHHHhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S--------------YPFYSNVCELAA  219 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~--------------~~~~~~l~e~l~  219 (300)
                      ++|+|||+|.||+.+|+.++..|++|++||++++...                +              .....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            6999999999999999999999999999999764311                0              123467888999


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +||+|+.++|.+.+....+.+++.+.+++++++++.+.+-  ...++.+++... -...++..|.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~-~~~ig~h~~~  146 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRG-DKFLALHFAN  146 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCG-GGEEEEEECS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCC-cceEEEccCC
Confidence            9999999999987777667778888899999999655543  456777777543 2346677665

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.08  E-value=1.6e-10  Score=104.01  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=81.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCc--ccCCHHHHhh-cCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSYP--FYSNVCELAA-NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~~--~~~~l~e~l~-~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++|||||+|.||..+|+.|+..|+  +|++++++++..     .+..  ...+++++++ +||+|++++|.. .+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH-
Confidence            589999999999999999999998  999999875421     1222  2457888899 999999999965 445555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .++.+.++++.+++|++++.....+.+.+.+.++
T Consensus        80 ~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~  113 (281)
T 2g5c_A           80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR  113 (281)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred             HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc
Confidence            3566779999999999998876777888888764

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.05  E-value=2e-10  Score=110.46  Aligned_cols=91  Identities=18%  Similarity=0.382  Sum_probs=71.8

Q ss_pred             cccCC-CEEEEEecChhHHHHHHHHHhC------CCEEEEECCCCCCC------CCCcc----cCCHHHHhhcCCEEEEe
Q 022233          165 SKLGG-KRVGIVGLGSIGSLVAKRLDAF------GCSISYNSRTKKPS------VSYPF----YSNVCELAANCDILIIC  227 (300)
Q Consensus       165 ~~l~g-~~vgIiG~G~IG~~~A~~l~~~------g~~V~~~~~~~~~~------~~~~~----~~~l~e~l~~aDvV~l~  227 (300)
                      ..|.| ++|||||+|+||.++|+.|+..      |++|++..+.....      .++..    ..++.|++++||+|+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa  128 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL  128 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence            56899 9999999999999999999988      99987655443221      23332    25799999999999999


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      +|..... .++. ++++.||+|++ |-.+.|
T Consensus       129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             SCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            9987664 4554 78999999998 466666

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.04  E-value=1.7e-10  Score=102.77  Aligned_cols=98  Identities=15%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCC--CCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT--KKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~--~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|||||+|.||..+|+.|...|++|+++++.  ++..     .+..  .++++++++||+|++++|.....+.+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            48999999999999999999999999998873  1111     1222  67888999999999999987666654  466


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .+.+++  ++||++.+.+.+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677776  99999998888888888888664

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.04  E-value=1.8e-10  Score=107.02  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      ..+.+++|||||+|.||+++|+.|+..|++|.+++++....      .+.... ++++++++||+|++++|.... ..++
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~   89 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLY   89 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHH
Confidence            35889999999999999999999999999999999876431      233333 888999999999999996554 5555


Q ss_pred             hHHHHhcCCCCcEEEEcC
Q 022233          239 NKQVLSALGKEGVVINIG  256 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~s  256 (300)
                      .+++.+.+++|+++++++
T Consensus        90 ~~~i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           90 KEEIEPNLKKGATLAFAH  107 (338)
T ss_dssp             HHHTGGGCCTTCEEEESC
T ss_pred             HHHHHhhCCCCCEEEEcC
Confidence            546677899999999884

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.61  E-value=2.1e-11  Score=105.22  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=72.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+++|+|||+|.||+.+|+.|...|++|.+++|+.....    +... .+++++++++|+|++++|.. .++.++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~-~~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEV-LCYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            7788999999999999999999999999999998765211    2222 37788899999999999975 566665  2 


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 022233          243 LSALGKEGVVINIGRGPII  261 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~v  261 (300)
                      +..++++.++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            3456789999999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.03  E-value=5.2e-10  Score=96.85  Aligned_cols=80  Identities=16%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .++.+++|+|||+|.||+.+|+.|...|++|.+++|+++             .+++||+|++++| .+.++.++. ++.+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~   79 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYAT   79 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHH
Confidence            358899999999999999999999999999999998754             5678999999999 666666654 4455


Q ss_pred             cCCCCcEEEEcCCCcc
Q 022233          245 ALGKEGVVINIGRGPI  260 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~  260 (300)
                      .++ ++++|++++|-.
T Consensus        80 ~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHT-TSEEEECCCCBC
T ss_pred             hcC-CCEEEEECCCCC
Confidence            677 999999999765

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.03  E-value=5.4e-10  Score=107.93  Aligned_cols=148  Identities=16%  Similarity=0.170  Sum_probs=101.3

Q ss_pred             CcceE-EEcCCCCCCCC-hhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccC
Q 022233           85 AVRLV-MTTSAGLNHVD-IAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLG  162 (300)
Q Consensus        85 ~Lk~I-~~~~~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~  162 (300)
                      +++-+ =-+++|+..+- +....+..|+|.|+.+....+.-+-..+.-    .       .+..+-|.         .. 
T Consensus       201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~----~-------sl~dgi~r---------~t-  259 (488)
T 3ond_A          201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCR----H-------SLPDGLMR---------AT-  259 (488)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHH----H-------HHHHHHHH---------HH-
T ss_pred             hcceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcccc----H-------HHHHHHHH---------Hc-
Confidence            34433 34567777652 223335679999997755444222222111    1       11111111         01 


Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                       +.++.|++++|+|+|.||+.+|++|+++|++|+++++++...     .++ ...+++++++.+|+|+.+.    .+.++
T Consensus       260 -g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~at----G~~~v  333 (488)
T 3ond_A          260 -DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTT----GNKDI  333 (488)
T ss_dssp             -CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECS----SCSCS
T ss_pred             -CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCC----CChhh
Confidence             445899999999999999999999999999999999875321     122 3457889999999999764    34677


Q ss_pred             chHHHHhcCCCCcEEEEcCCCc
Q 022233          238 INKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ++.+.++.||++++++|++++.
T Consensus       334 l~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          334 IMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             BCHHHHTTSCTTEEEEESSSTT
T ss_pred             hhHHHHHhcCCCeEEEEcCCCC
Confidence            8888999999999999999983

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.98  E-value=2.8e-10  Score=110.21  Aligned_cols=119  Identities=13%  Similarity=0.185  Sum_probs=88.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCCC------------------------CCcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPSV------------------------SYPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~~------------------------~~~~~~~l~e~l~~aDv  223 (300)
                      ++|+|||+|.||..+|..|...  |++|++||++++...                        +.....++++++++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999988  899999998753210                        11223577888999999


Q ss_pred             EEEecCCChhhhhc-------------chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee---CCCCCC
Q 022233          224 LIICCGLTAETHHM-------------INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD---VFENEP  287 (300)
Q Consensus       224 V~l~~p~~~~t~~l-------------i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD---V~~~EP  287 (300)
                      |++|+|......+.             ..+.+.+.+++|.++||+|+..+-..+.+.+.+++....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            99999865433221             123466778999999999999988888899999876421  233   356666


Q ss_pred             CCC
Q 022233          288 DVP  290 (300)
Q Consensus       288 ~~~  290 (300)
                      ..+
T Consensus       164 ~~~  166 (467)
T 2q3e_A          164 LAE  166 (467)
T ss_dssp             CCT
T ss_pred             hhc
Confidence            543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.98  E-value=2.1e-10  Score=102.36  Aligned_cols=98  Identities=14%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      ..++.+++|||||+|.||+.+|+.|...|++ |.+++++++..      .+.....+++++++++|+|++++|... .+.
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~-~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA-FAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH-HHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH-HHH
Confidence            3456678999999999999999999988998 88999876432      133445688888999999999999663 355


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      ++ +++.+.++++.++|+++.|...+.
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            54 456677889999999999987644

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.96  E-value=5.2e-10  Score=101.08  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCC-----CCC--cccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPS-----VSY--PFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~-----~~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      -++|||||+|.||+.+|+.|...  |++|.+++++++..     .+.  ....++++++++||+|++++|.... +.++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~-~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKT-IDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHH-HHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHH-HHHH-
Confidence            36899999999999999999876  68999999875421     122  2345778889999999999996544 5555 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          240 KQVLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       240 ~~~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .++.+. ++++.+++|++++.....+.+.+.+.+
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~  117 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKD  117 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccc
Confidence            456677 899999999998877667888888765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.95  E-value=3.2e-10  Score=105.52  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhc----CCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAAN----CDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~----aDvV~l~~p~~~~t~~li~  239 (300)
                      -++|||||+|.||.++|+.|+..|++|++||+++...     .+.....++++++++    ||+|++++|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            4589999999999999999999999999999986432     244445678887764    7999999995 4566666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      +++.. ++++++++|++.....-.+++.+.+
T Consensus        86 ~~l~~-~~~~~iv~Dv~Svk~~i~~~~~~~~  115 (341)
T 3ktd_A           86 DAVHT-HAPNNGFTDVVSVKTAVYDAVKARN  115 (341)
T ss_dssp             HHHHH-HCTTCCEEECCSCSHHHHHHHHHTT
T ss_pred             HHHHc-cCCCCEEEEcCCCChHHHHHHHHhC
Confidence            34433 5899999999876643334444433

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.94  E-value=2.1e-09  Score=103.52  Aligned_cols=154  Identities=13%  Similarity=0.098  Sum_probs=102.7

Q ss_pred             CCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCE
Q 022233          115 GNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCS  194 (300)
Q Consensus       115 p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~  194 (300)
                      .|.|-..|.|.+.+++|...|.         .++|......+.+ ..  ...-.=++|+|||+|.||..||..++..|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~-~~--~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~   79 (460)
T 3k6j_A           12 TGENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDH-TN--SEAYDVNSVAIIGGGTMGKAMAICFGLAGIE   79 (460)
T ss_dssp             TSGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBT-TS--CCCCCCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             cccchhhhhHHHHHHHHhHHHh---------hccccCCCCcccc-cc--CCcccCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            4556667778888887773332         4567632111112 10  1111236899999999999999999999999


Q ss_pred             EEEECCCCCCC-------------CCC-------------cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          195 ISYNSRTKKPS-------------VSY-------------PFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       195 V~~~~~~~~~~-------------~~~-------------~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      |++||++++..             .+.             ....+++ .+++||+|+.++|.+.+.+.-+-+++.+.+++
T Consensus        80 V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~  158 (460)
T 3k6j_A           80 TFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS  158 (460)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT
T ss_pred             EEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            99999986510             011             1234664 68999999999998887766566778888999


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          249 EGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       249 ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +++|++.+.+  +....+.+.+.. .-...++..|.
T Consensus       159 ~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn  191 (460)
T 3k6j_A          159 TCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN  191 (460)
T ss_dssp             TCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS
T ss_pred             CCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc
Confidence            9999644443  334556665543 23457788777

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.91  E-value=2.2e-09  Score=102.68  Aligned_cols=109  Identities=13%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----------------------CCcccCCHHHHhhc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----------------------SYPFYSNVCELAAN  220 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----------------------~~~~~~~l~e~l~~  220 (300)
                      +++..-++|+|||+|.||..+|..|+. |++|++||++++...                       ......++++++++
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~  109 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN  109 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC
Confidence            566777899999999999999999988 999999998764210                       12234578899999


Q ss_pred             CCEEEEecCCChh----------hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          221 CDILIICCGLTAE----------THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       221 aDvV~l~~p~~~~----------t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ||+|++++|....          .+.. .+.+.+ +++|+++|+.|+..+-..+.+.+.+.+..+
T Consensus       110 aDvViiaVPt~~~~~~~~~Dl~~V~~v-~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          110 ADYVIIATPTDYDPKTNYFNTSTVEAV-IRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             CSEEEECCCCEEETTTTEEECHHHHHH-HHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCEEEEeCCCccccccccccHHHHHHH-HHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            9999999997531          2222 245666 999999999999999889999998877644

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.90  E-value=7.7e-10  Score=100.86  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------------CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------------SYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -+.|+|||||+|.||..||..++ .|++|++||++++...            +.....++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            45789999999999999999999 9999999999864321            1222456766 89999999999999987


Q ss_pred             hhcchHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          235 HHMINKQVLSALGKEGVVI-NIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lI-n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +..+-.+ ++.+ ++++++ |+|.-++   ..+.+++. ..-...++-.|.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC
Confidence            7666555 4556 898884 8877554   34444442 222346666666

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.89  E-value=1.7e-09  Score=97.02  Aligned_cols=99  Identities=17%  Similarity=0.268  Sum_probs=76.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC--cccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY--PFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|+|||+|.||+.+|+.|...|++|.+++++++..     .+.  ....+++++ +++|+|++++|. ..+..++ +++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            489999999999999999999999999999875421     122  124578888 999999999994 3455555 466


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      .+.++++.++||++.......+.+.+.+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~  106 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC
Confidence            67789999999998777666666655543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.88  E-value=4.2e-09  Score=96.93  Aligned_cols=102  Identities=16%  Similarity=0.243  Sum_probs=78.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCC--CC-----CCCcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKK--PS-----VSYPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~--~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ...++|||||+|.||..+|..|...|    .+|.+|+|+++  ..     .+.....+..+++++||+|++++| ...++
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44578999999999999999999989    78999999864  21     134445678899999999999999 45666


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .++ .++...++++.++|+++-|-.  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            555 356667889999999987643  4556666664

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.86  E-value=6.8e-09  Score=100.03  Aligned_cols=102  Identities=14%  Similarity=0.278  Sum_probs=80.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------------------C-CCcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------------------V-SYPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------------------~-~~~~~~~l~e~l~~aDvV  224 (300)
                      ++|+|||+|.||..+|..|...|++|++||++++..                        . ......++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            699999999999999999999999999999875421                        0 012345788899999999


Q ss_pred             EEecCCCh---------hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          225 IICCGLTA---------ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       225 ~l~~p~~~---------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      ++++|...         ..+..+ +.+.+.+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999653         344443 566778999999999998776667777777765

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.86  E-value=5.6e-09  Score=84.71  Aligned_cols=103  Identities=16%  Similarity=0.266  Sum_probs=81.2

Q ss_pred             cCCCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          167 LGGKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       167 l~g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++-++|+|||+    |.||..++++|...|++|+.+++..++..+...+.+++|+.+..|++++++| .+....++. +.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            55779999999    9999999999999999988888876544566667899999999999999999 566676664 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .+ ...++++++++.    ..+++.+++++.++.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 566788888754    267888888887775

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.86  E-value=1.5e-08  Score=97.39  Aligned_cols=103  Identities=17%  Similarity=0.332  Sum_probs=82.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----C---------------------CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S---------------------YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~---------------------~~~~~~l~e~l~~aDvV  224 (300)
                      -+|+|||+|.||..+|..|...|++|++||++++...    +                     .....++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            3899999999999999999999999999999876411    1                     12346788999999999


Q ss_pred             EEecCCCh----------hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          225 IICCGLTA----------ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       225 ~l~~p~~~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++|+|...          ..+..+ +.+.+.+++|.++|+.|.-.+-..+.+.+.+++.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            99988643          234443 5677889999999999987777778888877764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.85  E-value=2.2e-09  Score=94.98  Aligned_cols=99  Identities=16%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC----EEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC----SISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~----~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ++|||||+|+||+.+|+.|...|+    +|.+|+|+++..      .+.....++++++++||+|++++|. ...+.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    999999986532      1444567899999999999999974 3445455 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      +++...++++.++|.+.-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            45666788999999776654  35566666644

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.84  E-value=2.4e-09  Score=100.33  Aligned_cols=103  Identities=19%  Similarity=0.299  Sum_probs=80.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcccCCHHHHhh-cCCEEEEecCCChhhhhcc
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFYSNVCELAA-NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li  238 (300)
                      +|.|++|+|+|+|+||+.+|++|..+|++|+++|++.....      +.. ..+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            58899999999999999999999999999999998754211      222 235566665 899998874     56678


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.+.++.|+ ..++++.+++++.+++ ..+.|+++++.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            877788884 5788999999988755 55777777763

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.83  E-value=1.5e-08  Score=89.96  Aligned_cols=99  Identities=22%  Similarity=0.382  Sum_probs=72.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC----CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG----CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g----~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .++|+|||+|.||+.+|+.|...|    .+|.+|+|+++. .+.....++.++++++|+|++++|. ..++.++ .++.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~-~~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVL-NNIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHH-HHSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHH-HHHHH
Confidence            468999999999999999999888    689999998765 4444556888999999999999994 4555554 34455


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .++ +.++|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 4555555444  2334666666553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.83  E-value=2.3e-09  Score=96.78  Aligned_cols=88  Identities=10%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|+|||+ |.||+.+|+.|...|++|.+|+|+++..     .+.. ..++.+++++||+|++++|... ++.++ +++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            59999999 9999999999999999999999875431     1222 2367788999999999999654 55555 4666


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 022233          244 SALGKEGVVINIGRGPI  260 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~  260 (300)
                      +.++++.++|+++.|..
T Consensus        89 ~~l~~~~ivv~~s~~~~  105 (286)
T 3c24_A           89 PRVRPGTIVLILDAAAP  105 (286)
T ss_dssp             GGSCTTCEEEESCSHHH
T ss_pred             HhCCCCCEEEECCCCch
Confidence            77899999999998873

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.83  E-value=2e-09  Score=87.35  Aligned_cols=86  Identities=20%  Similarity=0.355  Sum_probs=69.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC--cccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY--PFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      .+++|+|||.|.||+.+++.|+..|++|.+++|+.+...      +.  ....+++++++++|+|++++|..   ..++.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~   96 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE   96 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee
Confidence            388999999999999999999999999999999764321      22  23568899999999999999866   23444


Q ss_pred             HHHHhcCCCCcEEEEcCCCc
Q 022233          240 KQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~  259 (300)
                      .   +.+++|.+++|++...
T Consensus        97 ~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           97 E---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             G---GGCCTTCEEEECCSSC
T ss_pred             H---HHcCCCCEEEEccCCc
Confidence            3   5678999999998754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.81  E-value=7.6e-09  Score=91.81  Aligned_cols=96  Identities=21%  Similarity=0.311  Sum_probs=74.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|||||+|.||+.+++.|...|.+|.+|+++++..      .+.....+++++++++|+|++++| .....     +.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH
Confidence            589999999999999999999999999999976431      134445689999999999999999 44333     445


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..+++|.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55778999999977654  34566666544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.80  E-value=6.7e-09  Score=94.55  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=79.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------------CcccCCHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S------------------YPFYSNVC  215 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  215 (300)
                      ++|+|||+|.||..+|..|...|++|++||++++...                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999998753210                1                  11245778


Q ss_pred             HHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          216 ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       216 e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +.+++||+|++++|...+...-+-+++.+.++++++++..+.+-  ....+.+.+.... ..++...+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~-~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQD-RFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGG-GEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcc-cEEEEecCC
Confidence            88999999999999876654444456667788999988655543  3345555553221 235556554

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.80  E-value=2.7e-09  Score=92.67  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      .+++|+|||+|.||+.+|+.|...|++|.+++|+.+..     .+... .+++++++++|+|++++|. ...+.++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEE-EEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCce-ecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            45799999999999999999999999999999875421     12222 3788899999999999995 44555553   


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 022233          243 LSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd  262 (300)
                      +..+.++.++||+++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999997654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.79  E-value=1.1e-08  Score=98.10  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------------------CC-CcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------------------VS-YPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------------------~~-~~~~~~l~e~l~~aDvV  224 (300)
                      ++|+|||+|.||..+|..|...|++|+++|++++..                        .+ .....++++++++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            489999999999999999999999999999875321                        01 12345788889999999


Q ss_pred             EEecCCChh---------hhhcchHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHh
Q 022233          225 IICCGLTAE---------THHMINKQVLSALGK---EGVVINIGRGPIID-EQELVRCLVQ  272 (300)
Q Consensus       225 ~l~~p~~~~---------t~~li~~~~l~~mk~---ga~lIn~srg~~vd-~~aL~~aL~~  272 (300)
                      ++++|....         ++..+ +++.+.+++   +.++|+.|...+-. ++.+.+.+++
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999996554         44433 455667888   99999999877666 6777777766

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.78  E-value=2.6e-08  Score=89.94  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC---EEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC---SISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~---~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      .++|||||+|+||+.+|+.|...|+   +|.+|+|+++..      .+.....+..+++++||+|++++|. ...+.++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4789999999999999999999998   899999986532      2444556889999999999999984 4444444 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh-CCceEE
Q 022233          240 KQVLSA-LGKEGVVINIGRGPIIDEQELVRCLVQ-GEIKGA  278 (300)
Q Consensus       240 ~~~l~~-mk~ga~lIn~srg~~vd~~aL~~aL~~-~~i~~a  278 (300)
                      +++... ++++.++|+++-|-  ..+.|.+.+.. .++.++
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~  119 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA  119 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence            445555 78888999887664  35677777765 345443

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.76  E-value=4.2e-09  Score=96.70  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhC-CC-EEEEECCCCCCCC------C--CcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAF-GC-SISYNSRTKKPSV------S--YPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~-g~-~V~~~~~~~~~~~------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      ..++|||||+|.||+.+++.+... |. +|.+|+|+++...      +  .....+++++++++|+|++++|..   +.+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence            467999999999999999998764 87 8999999864321      2  334578999999999999999853   455


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEee
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLD  281 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LD  281 (300)
                      +..   +.+++|.++++++...+- ...+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE--EEEC
Confidence            654   578999999999877663 3444444443332  3466

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.75  E-value=8.5e-09  Score=84.32  Aligned_cols=103  Identities=13%  Similarity=0.197  Sum_probs=80.7

Q ss_pred             CCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCC--CCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTK--KPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~--~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      -++|+|||+    |++|..++++|...|++|+.+++..  +...+...+.++.|+....|++++++| .+....++. +.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~-~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ-EA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-HH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            678999999    8999999999999999988888876  444466667789999889999999999 466666664 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      .+ ...++++++.+  ..  ++++.+++++..+.-.
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEEE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEEE
Confidence            44 56677888764  22  7888888888887643

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.71  E-value=4e-08  Score=86.28  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=75.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEE-EEECCCCCCCCCCcccCCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSI-SYNSRTKKPSVSYPFYSNVCELA-ANCDILIICCGLTAETHHMINKQVLSALG  247 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V-~~~~~~~~~~~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk  247 (300)
                      ++|||||+|.||+.+++.+...|+++ .++|++... ..  .+.++++++ .++|+|++++|.....+     .....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~-~~--~~~~~~~l~~~~~DvVv~~~~~~~~~~-----~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH-EK--MVRGIDEFLQREMDVAVEAASQQAVKD-----YAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC-TT--EESSHHHHTTSCCSEEEECSCHHHHHH-----HHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch-hh--hcCCHHHHhcCCCCEEEECCCHHHHHH-----HHHHHHH
Confidence            48999999999999999998889997 688887532 11  467899999 69999999998543322     2345577


Q ss_pred             CCcEEEEcCCCcccCH---HHHHHHHHhCCc
Q 022233          248 KEGVVINIGRGPIIDE---QELVRCLVQGEI  275 (300)
Q Consensus       248 ~ga~lIn~srg~~vd~---~aL~~aL~~~~i  275 (300)
                      .|..+|+.+.+..-+.   +.|.++.++.++
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            8999999998887666   678777776544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.71  E-value=5e-08  Score=91.24  Aligned_cols=180  Identities=14%  Similarity=0.079  Sum_probs=113.2

Q ss_pred             CcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEEEeC---CCCC-----chhHHHHHH--HHHHH
Q 022233           63 SVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANA---GNVF-----SEDVADLAV--GLLID  132 (300)
Q Consensus        63 ~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---p~~~-----~~~vAE~~l--~l~L~  132 (300)
                      ++|+|+. ...+...+.....+++.++......++.-.++.+.++|+...|.   |.-.     -.++++.+-  +.+++
T Consensus        66 ~ad~i~~-vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVK-VKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEEC-SSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEE-ECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence            5788775 34455444433446766666655566654567778889988763   4211     134444333  33443


Q ss_pred             HhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----C
Q 022233          133 LLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----S  207 (300)
Q Consensus       133 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~  207 (300)
                      ... +...    ..|+        .| .+..-..+.+++|+|+|.|.+|+.+++.++.+|++|++++++++...     +
T Consensus       145 A~n-t~~~----~~g~--------G~-~l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~  210 (361)
T 1pjc_A          145 ARF-LERQ----QGGR--------GV-LLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF  210 (361)
T ss_dssp             HHH-TSGG----GTSC--------CC-CTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             HHH-Hhhc----cCCC--------ce-eccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhh
Confidence            322 1111    1111        11 11001247789999999999999999999999999999998764311     1


Q ss_pred             Ccc-------cCCHHHHhhcCCEEEEecCCCh-hhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          208 YPF-------YSNVCELAANCDILIICCGLTA-ETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       208 ~~~-------~~~l~e~l~~aDvV~l~~p~~~-~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ...       ..++.+.+.++|+|+.+++... ....++.++.++.|++|++++|++-
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          211 GSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             GGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            111       1245677889999999987533 2345567888999999999999983

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.70  E-value=7.3e-09  Score=91.97  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|+|||+|.||+.+|+.|...| .+|.+|+|+++..      .+.....++++++ ++|+|++++| ....+.++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            48999999999999999999989 9999999975431      1333445677778 9999999999 55554443    


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          243 LSALG-KEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       243 l~~mk-~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                       ..++ ++.++|+++.|--.  +.|.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCCH--HHHHHHcCCC
Confidence             3332 28999999665433  6677777654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.68  E-value=1.2e-08  Score=87.70  Aligned_cols=112  Identities=19%  Similarity=0.220  Sum_probs=80.7

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-----C-cccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-----Y-PFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-----~-~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+++...      +     . ....+++++++++|+|++++|. ..++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence            4799999 999999999999999999999998754211      1     0 1135678889999999999984 44444


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIID------------EQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd------------~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      ++. ++.+.++ +.++|+++.|--.+            .+.+.+.+...    ..++++.++|.
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~~  137 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIPA  137 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCCH
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchHH
Confidence            443 3444454 89999999876532            57777777532    34678777663

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.67  E-value=4e-08  Score=95.36  Aligned_cols=103  Identities=14%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CcccCCHHHHhhcCCE
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------VS-------------YPFYSNVCELAANCDI  223 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~l~~aDv  223 (300)
                      .++|+|||+|.||..+|..|+..|++|++||++++..            .+             .....++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4699999999999999999999999999999875321            01             1223467788999999


Q ss_pred             EEEecCCC---------hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          224 LIICCGLT---------AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       224 V~l~~p~~---------~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      |++++|..         ..++..+ +.+.+.++++.++|+.|...+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999963         4444444 456677999999999995555455556655544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.64  E-value=4.3e-08  Score=90.62  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=75.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C-----C---------cccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S-----Y---------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~-----~---------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ++|+|||+|.||..+|..|...|++|.+++|+++...      +     .         ....+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6999999999999999999999999999998753210      1     0         134578888999999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .... ..++ +++.+.+++++++|++ -|.......+.+.+.+.
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~~  125 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILREN  125 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHT
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHhc
Confidence            6654 4444 5667789999999999 44223444466666553

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.64  E-value=5.8e-08  Score=92.16  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC------------------cccCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY------------------PFYSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~------------------~~~~~l~e~l~~aDvV~l  226 (300)
                      ++|+|||+|.||..+|..|.. |++|++++++++..     .+.                  ....++.+.+++||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            489999999999999999999 99999999875321     111                  223467788999999999


Q ss_pred             ecCCCh----------hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          227 CCGLTA----------ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       227 ~~p~~~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++|...          .++..+ +.+.+ ++++.++|+.|.-++-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999763          344444 45566 8999999998888877778888777554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.64  E-value=6.6e-08  Score=93.69  Aligned_cols=100  Identities=13%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC-CC-EEEEECCCCC----CC----CC---C--------------------cccCCHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF-GC-SISYNSRTKK----PS----VS---Y--------------------PFYSNVC  215 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~-g~-~V~~~~~~~~----~~----~~---~--------------------~~~~~l~  215 (300)
                      -++|+|||+|.||..+|..|... |+ +|++||++++    ..    .+   .                    ....+ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            36999999999999999999999 99 9999999876    21    00   0                    11123 5


Q ss_pred             HHhhcCCEEEEecCCCh--------hhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022233          216 ELAANCDILIICCGLTA--------ETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       216 e~l~~aDvV~l~~p~~~--------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      +++++||+|++++|...        +...+.  .+.+.+.+++|.++|+.|.-++-..+.+.+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            77899999999999652        333233  3567788999999999999888877878764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.64  E-value=5.7e-08  Score=89.95  Aligned_cols=90  Identities=22%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC-------CEEEEECCCCC-----CCC-------------------CCcccCCHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG-------CSISYNSRTKK-----PSV-------------------SYPFYSNVCEL  217 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~e~  217 (300)
                      .++|+|||+|.||..+|..|...|       .+|.+|+|++.     ...                   +.....+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999999888       89999998765     100                   01123578888


Q ss_pred             hhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       218 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      +++||+|++++|. ..++.++ +++.+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 4555554 456677889999999988754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.63  E-value=5.1e-08  Score=87.30  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=67.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----C--Cc-----ccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----S--YP-----FYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~--~~-----~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      ++|+|||+|.||..+|..|...|++|.+|+|+++...     +  ..     ...+..+.++++|+|++++|... ++.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~-~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ-VSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG-HHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh-HHHH
Confidence            4899999999999999999999999999998765321     1  00     01233567889999999999654 4555


Q ss_pred             chHHHHhcCCCCcEEEEcCCCc
Q 022233          238 INKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~  259 (300)
                      + +++.+.++++.++|++..|-
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSSS
T ss_pred             H-HHHHhhCCCCCEEEEecCCC
Confidence            4 45667789999999986653

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.63  E-value=1.6e-08  Score=98.33  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------cccCCHHHHhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VSY-------------PFYSNVCELAA  219 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~~-------------~~~~~l~e~l~  219 (300)
                      -++|||||+|.||..||..+...|++|++||++++..                .+.             ....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            3589999999999999999999999999999976421                111             1234554 689


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVV-INIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      +||+|+.++|...+...-+-+++.+.++++++| .|+|.-++   ..+.+.+.. .-...++..|.+-|
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhh
Confidence            999999999988776655556777889999998 46765543   455555533 23457777777555

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.61  E-value=6.1e-08  Score=88.86  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=73.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECC--CCCCC-----CCC-----------cccC--CHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSR--TKKPS-----VSY-----------PFYS--NVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~--~~~~~-----~~~-----------~~~~--~l~e~l~~aDvV~l~~p  229 (300)
                      ++|+|||+|.||..+|..|...|++|++++|  +++..     .+.           ....  ++.++++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4899999999999999999999999999998  54321     111           1223  67788899999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHh
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGP---I-IDEQELVRCLVQ  272 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~---~-vd~~aL~~aL~~  272 (300)
                      .. .++.++ ..+.+ ++++.++|+++.|-   . -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            65 445444 45566 88999999998775   1 123445566654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.61  E-value=3.6e-08  Score=92.40  Aligned_cols=88  Identities=14%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-------CEEEEECCCCC-----CCC-------------------CCcccCCHHHHh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-------CSISYNSRTKK-----PSV-------------------SYPFYSNVCELA  218 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~e~l  218 (300)
                      ++|+|||.|.||..+|..|...|       .+|.+|+|+++     ...                   +.....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            48999999999999999999888       89999998765     110                   112235678889


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHh----cCCCCcEEEEcCCCc
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLS----ALGKEGVVINIGRGP  259 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~----~mk~ga~lIn~srg~  259 (300)
                      ++||+|++++|. ..++.++ .++.+    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999994 5556555 34555    688899999998873

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.60  E-value=5.5e-08  Score=94.41  Aligned_cols=104  Identities=13%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPS------------VS------------YPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~------------~~------------~~~~~~l~e~l~~aDv  223 (300)
                      ++|+|||+|.||..+|..|...  |++|++||++++..            .+            .....++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5999999999999999999987  78999999865321            00            1123466788899999


Q ss_pred             EEEecCCChh--------------hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh-CC
Q 022233          224 LIICCGLTAE--------------THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ-GE  274 (300)
Q Consensus       224 V~l~~p~~~~--------------t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~-~~  274 (300)
                      |++++|....              ++..+ +.+.+.+++|.++|+.|.-.+-..+.+.+.+++ .+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~  154 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQK  154 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhC
Confidence            9999986431              23222 456778999999999998777777778888877 44

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.60  E-value=7.2e-08  Score=92.23  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----C-C-cccCCHHHH---------------hhcCCEEE
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S-Y-PFYSNVCEL---------------AANCDILI  225 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~-~-~~~~~l~e~---------------l~~aDvV~  225 (300)
                      -+|.++.|||+|.||..+|..|...|++|++||++++...    + . .....++|+               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            5689999999999999999999999999999999865311    1 0 111233333               35799999


Q ss_pred             EecCCChhh--------hhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          226 ICCGLTAET--------HHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       226 l~~p~~~~t--------~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      +|+|.....        ..+.  .+.+.+.|++|.++|+.|+-++-..+.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence            999965421        1232  2567788999999999999988888888776543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.58  E-value=7.1e-08  Score=90.17  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------C------CcccCCHHHHhhcCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------S------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------~------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++|+|||.|.||..+|..|...|.+|.+|+|+++...             +      .....++++++++||+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            47899999999999999999999999999998743210             0      1223678899999999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      . ...+.++ +++...++++.++|+++.|-..++
T Consensus       109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            4 3555554 566778899999999988766553

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.57  E-value=8.4e-08  Score=86.64  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=75.0

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCCCC------cccCCHHHHhhcCCEEEEecCCC--hhhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSVSY------PFYSNVCELAANCDILIICCGLT--AETHH  236 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~~~------~~~~~l~e~l~~aDvV~l~~p~~--~~t~~  236 (300)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.+.....      ....++.++++++|+||.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4678999999999999999999999999 899999987543211      12345667788999999999975  33222


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          237 MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .++   .+.++++.+++|+...+. .+. |.++.++..+
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~-~T~-ll~~A~~~G~  227 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPY-KTP-ILIEAEQRGN  227 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSS-SCH-HHHHHHHTTC
T ss_pred             CCC---HHHcCCCCEEEEecCCCC-CCH-HHHHHHHCcC
Confidence            232   456889999999998754 444 5555555544

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.57  E-value=3.7e-08  Score=85.67  Aligned_cols=103  Identities=18%  Similarity=0.214  Sum_probs=70.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEE-ECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISY-NSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~-~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      -++|+|||+|.||+.+|+.|...|++|.+ ++|+++...      +.....+..+.++++|+|++++|.. ....++. +
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~-~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVT-Q  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHT-T
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHH-H
Confidence            46899999999999999999999999988 998865421      2223345566789999999999843 2332221 1


Q ss_pred             HHhcCCCCcEEEEcCCCcc------------cCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEGVVINIGRGPI------------IDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~------------vd~~aL~~aL~~~~i  275 (300)
                      + .. .++.++|+++-|--            ...+.+.+.+...++
T Consensus       101 l-~~-~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~v  144 (220)
T 4huj_A          101 V-SD-WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKV  144 (220)
T ss_dssp             C-SC-CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEE
T ss_pred             h-hc-cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCE
Confidence            1 12 35789999986541            145666666654444

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.56  E-value=7.3e-08  Score=84.74  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      .++|||||+|+||.++|+.|+..|++|.+|++.             ++ +++||  ++++|.. .+..++ .++...+++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~   67 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARR   67 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCC
Confidence            469999999999999999999999999999883             22 67899  8889976 555555 566777899


Q ss_pred             CcEEEEcC
Q 022233          249 EGVVINIG  256 (300)
Q Consensus       249 ga~lIn~s  256 (300)
                      |.++|+++
T Consensus        68 g~ivvd~s   75 (232)
T 3dfu_A           68 GQMFLHTS   75 (232)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEEC
Confidence            99999985

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.55  E-value=1.4e-07  Score=85.07  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++.+++.         .++.+.+++||+|+.+++..    ++|.++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~p----~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGKP----GFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCCT----TCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCCc----CcCCHHH
Confidence            4568999999999997 59999999999999999886542         47999999999999999832    3566554


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                         +|+|+++||+|.-.
T Consensus       221 ---vk~GavVIDVgi~r  234 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINR  234 (288)
T ss_dssp             ---SCTTCEEEECCCEE
T ss_pred             ---cCCCcEEEEccCCc
Confidence               58999999999654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.54  E-value=1.7e-08  Score=94.14  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +|+|||+|.||..+|..|...|++|.+|+|+++...                   +.....++.++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999998753210                   112235788889999999999994 


Q ss_pred             hhhhhcchHH---HHhcCCC-CcEEEEcCCCccc
Q 022233          232 AETHHMINKQ---VLSALGK-EGVVINIGRGPII  261 (300)
Q Consensus       232 ~~t~~li~~~---~l~~mk~-ga~lIn~srg~~v  261 (300)
                      ..++.++...   +...+++ +.++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            5556555331   5566778 8999999877443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.54  E-value=2.1e-07  Score=83.93  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=67.1

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++.+++.         .++++.+++||+|+.+++.    .++|.++ 
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~-  220 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSD-  220 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGG-
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHH-
Confidence            4568999999999998 69999999999999999887642         4799999999999999983    3456554 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                        .+|+|+++||++.-.
T Consensus       221 --~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          221 --MVKEGVIVVDVGINR  235 (285)
T ss_dssp             --GSCTTEEEEECCCEE
T ss_pred             --HcCCCeEEEEeccCc
Confidence              469999999998654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.53  E-value=1.9e-07  Score=84.77  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHH--HHhhcCCEEEEecCCChhhhhcchH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC--ELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~--e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+++++..         .+++  +.+++||+|+.+++.    .++|.+
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------~~l~l~~~~~~ADIVI~Avg~----p~~I~~  226 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------STEDMIDYLRTADIVIAAMGQ----PGYVKG  226 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------CHHHHHHHHHTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------CCchhhhhhccCCEEEECCCC----CCCCcH
Confidence            4568999999999988 69999999999999999987732         2577  999999999999985    335655


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 022233          241 QVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~  259 (300)
                      +   .+|+|+++||++.-.
T Consensus       227 ~---~vk~GavVIDvgi~~  242 (300)
T 4a26_A          227 E---WIKEGAAVVDVGTTP  242 (300)
T ss_dssp             G---GSCTTCEEEECCCEE
T ss_pred             H---hcCCCcEEEEEeccC
Confidence            4   369999999998643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.53  E-value=4.4e-08  Score=90.36  Aligned_cols=96  Identities=22%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----C-----------CcccCCHHHHhhcCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----S-----------YPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~-----------~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      .++|+|||+|.||..+|.+|...|.+|.+|+|+++...     +           .....++++ ++.+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            56999999999999999999999999999999753210     1           233457778 8899999999994 5


Q ss_pred             hhhhcchHHHHhcCC-CCcEEEEcCCCccc-CHHHHHHHHH
Q 022233          233 ETHHMINKQVLSALG-KEGVVINIGRGPII-DEQELVRCLV  271 (300)
Q Consensus       233 ~t~~li~~~~l~~mk-~ga~lIn~srg~~v-d~~aL~~aL~  271 (300)
                      .++.++     ..++ ++.++|+++.|--. ..+.+.+.+.
T Consensus        92 ~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           92 YIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             GHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             HHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            555443     3344 78999999977332 2234444443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.52  E-value=2.3e-07  Score=83.19  Aligned_cols=77  Identities=17%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      +.|+++.|||.|. +|+.+|+.|...|++|++.+++         ..++++.+++||+|+.+++.    .++|.++   .
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~---~  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNRE---M  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGG---G
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHh---h
Confidence            8899999999986 7999999999999999988763         25799999999999999985    2356654   3


Q ss_pred             CCCCcEEEEcCCCc
Q 022233          246 LGKEGVVINIGRGP  259 (300)
Q Consensus       246 mk~ga~lIn~srg~  259 (300)
                      +|+|+++||++.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            69999999999643

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.52  E-value=2.4e-07  Score=83.57  Aligned_cols=80  Identities=24%  Similarity=0.363  Sum_probs=66.9

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++..++         ..++++.+++||+|+.+++.    .++|.++ 
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~-  221 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVGK----PNFITAD-  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGG-
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---------chhHHHhcccCCEEEECCCC----CCCCCHH-
Confidence            4568999999999998 6999999999999999988764         24799999999999999973    3456554 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                        .+|+|+++||++.-.
T Consensus       222 --~vk~GavVIDvgi~~  236 (285)
T 3l07_A          222 --MVKEGAVVIDVGINH  236 (285)
T ss_dssp             --GSCTTCEEEECCCEE
T ss_pred             --HcCCCcEEEEecccC
Confidence              469999999998644

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.52  E-value=1.8e-07  Score=85.97  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCC------CCCC--c-c-----c--CCHHHHhhcCCEEEE
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKP------SVSY--P-F-----Y--SNVCELAANCDILII  226 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~------~~~~--~-~-----~--~~l~e~l~~aDvV~l  226 (300)
                      |.++.|+++.|||.|.| |+.+|+.|...|.+|++.+|+...      ....  . .     .  .++++.+++||+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            66899999999999976 999999999999999999886211      1111  1 1     1  568899999999999


Q ss_pred             ecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233          227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       227 ~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  261 (300)
                      +++..   .-+|..+.   +|+|+++||+|...=+
T Consensus       252 Atg~p---~~vI~~e~---vk~GavVIDVgi~rD~  280 (320)
T 1edz_A          252 GVPSE---NYKFPTEY---IKEGAVCINFACTKNF  280 (320)
T ss_dssp             CCCCT---TCCBCTTT---SCTTEEEEECSSSCCB
T ss_pred             CCCCC---cceeCHHH---cCCCeEEEEcCCCccc
Confidence            98742   12265554   5899999999976533

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.51  E-value=2.3e-07  Score=83.50  Aligned_cols=81  Identities=17%  Similarity=0.367  Sum_probs=67.5

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhC--CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAF--GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~--g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      +.++.|+++.|||.|.| |+.+|+.|...  |.+|++.+++.         .++.+.+++||+|+.+++..    ++|.+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~p----~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGVA----HLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCCT----TCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCCC----cccCH
Confidence            44689999999999986 99999999998  89999886543         57999999999999999732    35665


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 022233          241 QVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~  260 (300)
                      +.   +|+|+++||+|.-.+
T Consensus       220 ~~---vk~GavVIDVgi~r~  236 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRT  236 (281)
T ss_dssp             GG---SCTTCEEEECCEEEE
T ss_pred             HH---cCCCcEEEEccCCCC
Confidence            54   589999999997654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.51  E-value=8.6e-08  Score=92.61  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------------------C--CcccCCHHHHhhcC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------------------S--YPFYSNVCELAANC  221 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------------------~--~~~~~~l~e~l~~a  221 (300)
                      -++|+|||+|.||..+|..+...|++|+++|++++...                         .  .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            45899999999999999999999999999998753210                         0  0112455 568899


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      |+|+.++|...+...-+-+++.+.++++++|++. ..++ ....|.+.+... -..+++..|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~~-~~~~la~~~~~~-~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSAL-NVDDIASSTDRP-QLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSS-CHHHHHTTSSCG-GGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCCc-CHHHHHHHhcCC-cceEEeecCC
Confidence            9999999977655544445677778999999873 3333 334666665432 2235667674

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.50  E-value=4.7e-07  Score=82.20  Aligned_cols=82  Identities=18%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++.+++         ..++.+.+++||+|+.+++..    ++|..+.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~p----~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQP----EMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCCT----TCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCCc----ccCCHHH
Confidence            4568999999999996 6999999999999999988654         247999999999999999852    3566554


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 022233          243 LSALGKEGVVINIGRGPII  261 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~v  261 (300)
                         +|+|+++||+|.-.+-
T Consensus       227 ---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             ---SCTTCEEEECCCBC--
T ss_pred             ---cCCCcEEEEccCCCcc
Confidence               5899999999986543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.50  E-value=8.2e-08  Score=86.86  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcc------------cCCHHHHhh---cCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPF------------YSNVCELAA---NCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~------------~~~l~e~l~---~aDvV~l~~p  229 (300)
                      ++|+|||+|.||..+|..|...|++|++++|+++...     +...            ..+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999998753211     1100            113344444   8999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      . ..++.++ +++.+.++++.++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            4 4555554 45667789999999998753 3346666666554443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.49  E-value=3.8e-07  Score=82.23  Aligned_cols=80  Identities=20%  Similarity=0.433  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.|+++.|||.|. +|+.+|..|...|++|++..+..         .++++.+++||+|+.+++.    .++|.++ 
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~-  221 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGE-  221 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGG-
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHH-
Confidence            4568999999999987 79999999999999999876532         3799999999999999974    3456554 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                        .+|+|+++||++.-.
T Consensus       222 --~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          222 --WIKEGAIVIDVGINR  236 (286)
T ss_dssp             --GSCTTCEEEECCSCS
T ss_pred             --HcCCCeEEEEecccc
Confidence              469999999998543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.44  E-value=2.2e-07  Score=84.66  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CC---cc--cCCHHHHhhcCCEEEEecCCChh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SY---PF--YSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~---~~--~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++.+++++|+|.|.+|++++..|...|+ +|++++|+.+...      +.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            3678999999999999999999999998 9999999864311      11   11  12466778899999999997643


Q ss_pred             h--hh-cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          234 T--HH-MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       234 t--~~-li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .  .. .++   .+.++++.+++|++.. +..+. |.++.++.++
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~  257 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYN-PLETK-WLKEAKARGA  257 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTC
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcC
Confidence            1  11 132   3457899999999985 44444 6666666555

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.43  E-value=2.9e-07  Score=81.98  Aligned_cols=99  Identities=18%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCC--hhhhhc
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLT--AETHHM  237 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~--~~t~~l  237 (300)
                      +.| +++|||.|.+|++++..|...|. +|.+++|+.+...      +.....++.+.++++|+|++++|..  ++ ...
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC
Confidence            568 99999999999999999999998 8999999865321      1113456788899999999999864  22 223


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++.+.   ++++.+++|+.-+   .++-|.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44433   5789999999998   555555666555

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.42  E-value=1e-07  Score=96.75  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------cccCCHHHHhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VSY-------------PFYSNVCELAA  219 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~~-------------~~~~~l~e~l~  219 (300)
                      =++|||||+|.||..||..+...|++|++||++++..                .+.             ....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3579999999999999999999999999999875421                010             112345 6789


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +||+|+.++|.+.+...-+-+++.+.++++++|++.+.+-  ....+.+.+... -...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~-~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRP-ENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCG-GGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCc-cceEEEEccC
Confidence            9999999999888766555567778899999987544332  234555555321 1236677676

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.34  E-value=2.7e-07  Score=93.83  Aligned_cols=111  Identities=15%  Similarity=0.070  Sum_probs=78.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CcccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------------YPFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------------~~~~~~l~e~l~~  220 (300)
                      ++|+|||+|.||..+|..+...|++|++||++++..                .+             .....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            589999999999999999999999999999875321                01             0122355 57899


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      ||+|+.++|...+.+.-+-+++.+.+++++++++.+.+-  ....+.+.+... -...++..|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcCC-CCEEEecCCC
Confidence            999999999887766555567778899999986544332  234455554322 1236667676

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.32  E-value=1.8e-06  Score=69.95  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=75.3

Q ss_pred             CCCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCC--CCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          168 GGKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRT--KKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       168 ~g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~--~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      +-++|+|||.    |++|..+++.|+..|++|+-.++.  .....+...+.+++|+-...|++++++|. +.+..++. +
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-H
Confidence            4669999999    899999999999999987666665  33334556678899998899999999996 66666664 3


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ..+. ..+.+|++.+..    ++++.+.+++.++.
T Consensus        90 ~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLAL-RPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHHH-CCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            3333 334676665432    57788888877665

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.31  E-value=2.7e-06  Score=69.21  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             CCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          169 GKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       169 g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      -++|+|||.    |.+|..+++.|+..|++|+-.++......+...+.+++|+....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            679999999    79999999999999999776666543334556678899998899999999996 55555553 3333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      . ..+.++++.+  .  .++++.+++++.++.-.
T Consensus       100 ~-gi~~i~~~~g--~--~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A          100 K-GAKVVWFQYN--T--YNREASKKADEAGLIIV  128 (144)
T ss_dssp             H-TCSEEEECTT--C--CCHHHHHHHHHTTCEEE
T ss_pred             c-CCCEEEECCC--c--hHHHHHHHHHHcCCEEE
Confidence            2 3346665543  2  37888888888777643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.30  E-value=4.8e-07  Score=81.30  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=73.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++++.|+|.|.+|++++..|...|.+|++++|+.++..     +.. ..+++++ .++|+|+.++|..-.....++.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~-~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCD-CFMEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCE-EESSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-EecHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            88999999999999999999999999999999876532     111 1123332 3899999999976433234665533


Q ss_pred             -hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          244 -SALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       244 -~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                       +.++++.+++|+...+  .+. |.++.++..+
T Consensus       196 ~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~  225 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF--LTP-FLSLAKELKT  225 (269)
T ss_dssp             HHHHHHCSEEEESCCSS--CCH-HHHHHHHTTC
T ss_pred             HhhCCCCCEEEEeCCCC--chH-HHHHHHHCcC
Confidence             3678899999999986  555 5555555444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.27  E-value=2.8e-07  Score=83.64  Aligned_cols=101  Identities=13%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-----C-CEEEEECCCCCC-----C-CCCccc-------------CCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-----G-CSISYNSRTKKP-----S-VSYPFY-------------SNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-----g-~~V~~~~~~~~~-----~-~~~~~~-------------~~l~e~l~~aDvV  224 (300)
                      ++|+|||+|.||..+|..|...     | .+|++++| .+.     . .+....             .+..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999988     9 99999998 321     1 121111             0234567899999


Q ss_pred             EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ++++|... ++.++ +.+.+.++++.++|++.-| +-.++.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            99999765 34444 4556667889999999776 222355656554433

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.27  E-value=7.6e-07  Score=84.45  Aligned_cols=90  Identities=22%  Similarity=0.279  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC---C--------CCCCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK---P--------SVSYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~---~--------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -|.||+|+|||+|.-|.+-|.+|+..|.+|.+--|...   .        ..+.. ..+..|+++.||+|++.+|+..+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            38999999999999999999999999999976544111   0        12333 457999999999999999976554


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      . +. +++.+.||+|+.+. .|.|=
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            4 33 57999999999876 55553

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.24  E-value=7.2e-08  Score=86.65  Aligned_cols=84  Identities=12%  Similarity=0.039  Sum_probs=56.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEE-EEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSI-SYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V-~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|||||+|+||+.+|+.|... ++| .+|+++++..      .+. ...+++++++++|+|++++|... ..     +.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~-----~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IK-----TV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HH-----HH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HH-----HH
Confidence            4799999999999999999877 888 5899875421      123 44567788889999999999654 22     33


Q ss_pred             HhcC-CCCcEEEEcCCCccc
Q 022233          243 LSAL-GKEGVVINIGRGPII  261 (300)
Q Consensus       243 l~~m-k~ga~lIn~srg~~v  261 (300)
                      +..+ +++.++||++-+-..
T Consensus        75 ~~~l~~~~~ivi~~s~~~~~   94 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFLSS   94 (276)
T ss_dssp             HTTTCCSSCCEEECCSSSCG
T ss_pred             HHHhccCCCEEEECCCCCcH
Confidence            3334 688999999865443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.23  E-value=4.3e-06  Score=76.54  Aligned_cols=104  Identities=20%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------------CC------CcccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------------VS------YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~------~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....            .+      .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            589999999999999999999999999999875210            01      112246667666899999999966


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .. +.++ +.+...+++++++|.+.-| +-.++.+.+.+...++.
T Consensus        83 ~~-~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 EG-ADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             TT-CCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             Ch-HHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            53 3333 5566778889999998776 33346777777655554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.22  E-value=4.4e-06  Score=76.61  Aligned_cols=83  Identities=23%  Similarity=0.282  Sum_probs=64.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CC--cccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SY--PFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~--~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .++++|||.|.||+.+++.+.. ++. +|.+|+|+ +...         +.  ... ++++++++||+|++|+|..   .
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            5799999999999999999885 454 79999999 3211         22  223 8999999999999999864   3


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCc
Q 022233          236 HMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .++.   .+.+++|+++++++.-.
T Consensus       196 pvl~---~~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          196 PLFA---GQALRAGAFVGAIGSSL  216 (313)
T ss_dssp             CSSC---GGGCCTTCEEEECCCSS
T ss_pred             cccC---HHHcCCCcEEEECCCCC
Confidence            4554   24689999999998653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.20  E-value=5.6e-06  Score=67.51  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCccc----CC---HHHH-hhcCCEEEEecC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFY----SN---VCEL-AANCDILIICCG  229 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~----~~---l~e~-l~~aDvV~l~~p  229 (300)
                      .....+++|.|+|+|.||+.+|+.|+..|.+|+++++++...      .+....    .+   +.++ +.++|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            455778999999999999999999999999999998875431      122111    12   3333 678999999998


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ....+.  .-......+.+...+|-..++.
T Consensus        94 ~~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            654433  2233445445556666665655

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.18  E-value=6.8e-07  Score=74.89  Aligned_cols=91  Identities=14%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhC-CCEEEEECCCCCCC-----CCCcc----cCC---HHHH--hhcCCEEEEecC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAF-GCSISYNSRTKKPS-----VSYPF----YSN---VCEL--AANCDILIICCG  229 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~-----~~~~~----~~~---l~e~--l~~aDvV~l~~p  229 (300)
                      .++.+++|+|+|+|.||+.+|+.|+.. |++|.+++++++..     .+...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            457788999999999999999999998 99999999876431     12211    112   3444  678999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..+.+..++  ..+..+.+...+|..+.
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            765554333  34556666666665443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.15  E-value=3.3e-06  Score=78.67  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             CCCEEEEEecChhHHHHHHHHH-hCC-CEEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLD-AFG-CSISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~-~~g-~~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..++|+|||.|.||+.+++.+. ..+ .+|.+|+|+++...          +  ...+.++++++++||+|++++|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            3679999999999999998875 345 48999999864310          2  2235689999999999999999762 


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ...++..   +.+++|..+++++..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3345542   568999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.13  E-value=5.2e-06  Score=75.73  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---CC--------------CcccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---VS--------------YPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---~~--------------~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....   .+              .....+.++ +..+|+|++++|...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~~   81 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTFA   81 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCCC
Confidence            589999999999999999999999999999875210   01              011234544 689999999999554


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                       ++.++ +.+...+++++++|.+.-| +-.++.|.+.+...++.++
T Consensus        82 -~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           82 -NSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             -GGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             -cHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence             34333 5566778899999999877 2235667777765565443

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.12  E-value=2.5e-06  Score=80.36  Aligned_cols=83  Identities=22%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCC---EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ...+|.|||. |..|+..++.+.++|.   .|..+|++.... +..    . +.+.++|+||.++........+|+++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            3668999999 9999999999999998   899999865221 222    1 3567999999999987777789999999


Q ss_pred             hcC-CCCcEEEEcC
Q 022233          244 SAL-GKEGVVINIG  256 (300)
Q Consensus       244 ~~m-k~ga~lIn~s  256 (300)
                      +.| |||++|||+|
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999997

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.12  E-value=1.2e-05  Score=75.30  Aligned_cols=92  Identities=13%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC----CCCC---C------------CCcccCCHHHHhhcCCE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT----KKPS---V------------SYPFYSNVCELAANCDI  223 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~----~~~~---~------------~~~~~~~l~e~l~~aDv  223 (300)
                      |.++.+.+|.|+|.|.+|..+|+.|...|. +|+++|++    ....   .            ......+|+|+++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            446888999999999999999999999999 89999987    3221   0            11124579999999999


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      ++-+.   .  .++++++.++.|+++++++.+|+...
T Consensus       267 lIG~S---a--p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVS---R--GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECS---C--SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeC---C--CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            88873   1  38899999999999999999997654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.09  E-value=4.2e-06  Score=66.14  Aligned_cols=85  Identities=19%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcc----cCCHH---HH-hhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPF----YSNVC---EL-AANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~----~~~l~---e~-l~~aDvV~l~~p~~~~t  234 (300)
                      +++|+|+|+|.+|+.+|+.|...|.+|.+++++++..      .+...    ..+.+   +. +.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            5799999999999999999999999999998865321      12211    11222   22 57899999999865433


Q ss_pred             hhcchHHHHhcCCCCcEEEEc
Q 022233          235 HHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~  255 (300)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223445567777666644

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.08  E-value=4.9e-06  Score=76.18  Aligned_cols=100  Identities=20%  Similarity=0.319  Sum_probs=69.5

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CC-------------CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VS-------------YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~-------------~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      ...++|+|||.|.||..+|..|...|.+|.+| ++++..     .+             .....++++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            45779999999999999999999999999998 554211     01             111234544 68999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLV  271 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  271 (300)
                      |.. .++.++ +++...+++++++|.+.-|= -.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            965 555544 45666788999999997773 22345556553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.07  E-value=1.8e-06  Score=79.64  Aligned_cols=87  Identities=18%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC----CCCC-------------cccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP----SVSY-------------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~----~~~~-------------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|||.|.||..+|..|...|.+|.+++|....    ..+.             ....++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            468999999999999999999999999999985211    0111             11246666 5899999999996 


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ..++.++ +++...+++++++|.+.-|
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            4555444 3344567889999999888

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.04  E-value=5.8e-06  Score=63.33  Aligned_cols=95  Identities=12%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC-----CCC-------cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS-----VSY-------PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~-----~~~-------~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      .+++|+|+|.|.||+.+++.|...| ++|.+++|++...     .+.       ....++.++++++|+|+.++|.... 
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT-   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH-
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh-
Confidence            3679999999999999999999999 8999999875421     111       1123456778899999999974432 


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      ..++.    ...+.|...++.+ +.+-..+.+.+
T Consensus        83 ~~~~~----~~~~~g~~~~~~~-~~~~~~~~~~~  111 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT-EDVAATNAVRA  111 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC-SCHHHHHHHHH
T ss_pred             HHHHH----HHHHhCCCEEEec-CcHHHHHHHHH
Confidence            22221    2235677778775 33333344433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.04  E-value=3.1e-06  Score=68.01  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc----cC---CHHHH-hhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF----YS---NVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~---~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      ..+|.|+|+|.+|+.+|+.|+..|++|++++++++..     .+...    ..   .++++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            3489999999999999999999999999999876531     12211    11   12332 578999999999766554


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .++  ..+..+.++..+|-..
T Consensus        87 ~~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEEE
Confidence            332  3445555666666443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.98  E-value=4.5e-06  Score=78.70  Aligned_cols=84  Identities=8%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             CEEEEEecChhHHHHHHHHHh-CCCEEEEEC---CCCCC------CCC---------C----------cccCCHHHHhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA-FGCSISYNS---RTKKP------SVS---------Y----------PFYSNVCELAAN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~~~~---~~~~~------~~~---------~----------~~~~~l~e~l~~  220 (300)
                      ++|+|||.|.||..+|..|+. .|++|.+|+   ++++.      ..+         .          ....+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999987 599999999   53211      001         1          123468888999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEc
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~  255 (300)
                      +|+|++++|... .+.++ +++...+++++++|+.
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999654 34333 4556678889999985

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.98  E-value=1.5e-05  Score=73.34  Aligned_cols=83  Identities=16%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHh-CC-CEEEEECCCCCCCC-----------CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDA-FG-CSISYNSRTKKPSV-----------SYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~-~g-~~V~~~~~~~~~~~-----------~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      ..++++|||.|.||+.+++.+.. .+ .+|.+|+|+++...           ... +.++++++ ++|+|++++|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            35699999999999999999886 44 47899999865321           123 57899999 9999999999643  


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                       .++..   +.+++|..+++++.-
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSCC
T ss_pred             -ceecH---HHcCCCeEEEECCCC
Confidence             44542   568999999999633

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.97  E-value=8.8e-06  Score=74.76  Aligned_cols=117  Identities=15%  Similarity=0.063  Sum_probs=85.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC--------------------CC----------CcccCCHHHHh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS--------------------VS----------YPFYSNVCELA  218 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------------------~~----------~~~~~~l~e~l  218 (300)
                      -.+|+|||.|.||+.+|..+...|++|..+|++++..                    .+          .....+++|++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            4589999999999999999999999999999875320                    00          01245788999


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      ++||+|+=++|-+-+.+.-+-+++-+.++++++|-..+++  +.-..|.+.+.... ...++=-|.+-|.
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~p~-r~ig~HffNP~~~  152 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAHVK-QCIVAHPVNPPYY  152 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTTGG-GEEEEEECSSTTT
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccCCC-cEEEecCCCCccc
Confidence            9999999999998888776777777888999887555444  34466666664432 2355555555443

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.97  E-value=3.3e-06  Score=76.29  Aligned_cols=104  Identities=17%  Similarity=0.109  Sum_probs=73.0

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C---CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S---YPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~---~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.+...      .   .....+++++.+++|+|+.++|......
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            4779999999999999999999999997 9999999864321      0   0112345565588999999999764322


Q ss_pred             -hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          236 -HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       236 -~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                       ..+.   .+.++++.+++|+.-.+ ..+. +.++.++..
T Consensus       203 ~~~l~---~~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~G  237 (281)
T 3o8q_A          203 LPAID---PVIFSSRSVCYDMMYGK-GYTV-FNQWARQHG  237 (281)
T ss_dssp             -CSCC---GGGEEEEEEEEESCCCS-SCCH-HHHHHHHTT
T ss_pred             CCCCC---HHHhCcCCEEEEecCCC-ccCH-HHHHHHHCC
Confidence             1233   24578899999998775 4455 444445444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.92  E-value=1.8e-05  Score=74.63  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCC--------CEEEEECCCCCCC------------------CC------CcccCCHHHHh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFG--------CSISYNSRTKKPS------------------VS------YPFYSNVCELA  218 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g--------~~V~~~~~~~~~~------------------~~------~~~~~~l~e~l  218 (300)
                      +|+|||.|..|.++|..|...|        .+|..|.|.++..                  .+      .....++++++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999998655        3588887754310                  01      12345899999


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ++||+|++++|. +..+.++ +++...++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999994 4445444 45666788999999999884

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.92  E-value=1e-05  Score=74.01  Aligned_cols=100  Identities=12%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .++|+|||.|.||..+|..|...|+ +|..+|++.+...               .  .....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4699999999999999999998898 9999998764211               1  1112456 778999999999842


Q ss_pred             Ch-----------hhhhc---chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          231 TA-----------ETHHM---INKQVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       231 ~~-----------~t~~l---i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      ..           ++..+   +-+++-+ ..+++++|+++-..-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~-~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKK-YCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           11111   1122223 3569999999876555555665554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.92  E-value=5.4e-06  Score=74.34  Aligned_cols=105  Identities=14%  Similarity=0.074  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC---cccCCHHHHhh-cCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY---PFYSNVCELAA-NCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~---~~~~~l~e~l~-~aDvV~l~~p~~~~t~  235 (300)
                      .+.+++++|+|.|.+|++++..|...|.+|++++|+.+...      +.   ....+++++.+ ++|+|+.++|......
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCC
Confidence            36789999999999999999999999999999999854311      00   01123344434 8999999999764321


Q ss_pred             -hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          236 -HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       236 -~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                       .-++.+.   ++++.+++|+...+..++.-+..+-+.|
T Consensus       196 ~~~i~~~~---l~~~~~v~D~~y~p~~~t~ll~~a~~~G  231 (272)
T 1p77_A          196 TASVDAEI---LKLGSAFYDMQYAKGTDTPFIALCKSLG  231 (272)
T ss_dssp             --CCCHHH---HHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             CCCCCHHH---cCCCCEEEEeeCCCCcCCHHHHHHHHcC
Confidence             0133333   4578999999997655455444444444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.90  E-value=9.1e-06  Score=64.38  Aligned_cols=91  Identities=16%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC-----CCCCcc----cCC---HHHH-hhcCCEEEEecCCChh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSYPF----YSN---VCEL-AANCDILIICCGLTAE  233 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~-----~~~~~~----~~~---l~e~-l~~aDvV~l~~p~~~~  233 (300)
                      +.+++|+|+|+|.+|+.+++.|...|++|.++++++..     ..+...    ..+   +.++ +.++|+|+++++...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56788999999999999999999999999998876432     111111    112   2233 6789999999986533


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      +.. .-......+.+. .+|-.+.+.
T Consensus        84 ~~~-~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 AST-LTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHH-HHHHHHHHTTCS-EEEEECCSH
T ss_pred             HHH-HHHHHHHHcCCC-eEEEEeCCH
Confidence            221 223344556666 555555544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.89  E-value=1.6e-05  Score=72.13  Aligned_cols=102  Identities=18%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CCEEEEEecChhHHH-HHHHHHh-CCCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          169 GKRVGIVGLGSIGSL-VAKRLDA-FGCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       169 g~~vgIiG~G~IG~~-~A~~l~~-~g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      ..+|||||+|.||+. +++.++. -++++. +++++++..      .+...+.++++++++.|+|++++|.....+  +-
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~--~~   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYE--II   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHH--HH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHH--HH
Confidence            369999999999996 8888876 467876 788876532      133447899999999999999999665544  22


Q ss_pred             HHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHhCCc
Q 022233          240 KQVLSALGKEG-VVIN-IGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       240 ~~~l~~mk~ga-~lIn-~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ...   ++.|. +++. ...-.+-+.++|.++.++.++
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            223   33443 4544 334455667778888777554

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.88  E-value=4.1e-05  Score=69.34  Aligned_cols=79  Identities=23%  Similarity=0.341  Sum_probs=64.3

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-++ +|+++|..|...|+.|+.....         ..++.+..++||+|+.++.-    .++|..+ 
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------T~dl~~~~~~ADIvV~A~G~----p~~i~~d-  239 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------TQNLPELVKQADIIVGAVGK----AELIQKD-  239 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHHTCSEEEECSCS----TTCBCGG-
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC---------CCCHHHHhhcCCeEEeccCC----CCccccc-
Confidence            5568999999999886 4999999999999999876543         24799999999999999753    3456544 


Q ss_pred             HhcCCCCcEEEEcCCC
Q 022233          243 LSALGKEGVVINIGRG  258 (300)
Q Consensus       243 l~~mk~ga~lIn~srg  258 (300)
                        ..|+|+++||++--
T Consensus       240 --~vk~GavVIDVGin  253 (303)
T 4b4u_A          240 --WIKQGAVVVDAGFH  253 (303)
T ss_dssp             --GSCTTCEEEECCCB
T ss_pred             --cccCCCEEEEecee
Confidence              47999999999853

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.87  E-value=2.2e-05  Score=70.54  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=72.9

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CC--cccCCHHHHh-hcCCEEEEecCCChhh
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SY--PFYSNVCELA-ANCDILIICCGLTAET  234 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~--~~~~~l~e~l-~~aDvV~l~~p~~~~t  234 (300)
                      .++.|+++.|+|.|.+|++++..|...|. +|++++|+.+...      ..  ....+++++- .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            34789999999999999999999999996 9999999865321      10  1112344433 7899999999965332


Q ss_pred             h-hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          235 H-HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       235 ~-~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      . ..+..   +.++++.+++|+.-.+ ..+.-|.+|-+.|
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            1 12332   4578999999998774 4555444554444

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.86  E-value=5.6e-05  Score=68.79  Aligned_cols=102  Identities=23%  Similarity=0.332  Sum_probs=70.6

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+|||||+|.||+. +++.+... ++++. ++++++....      +...+.+++++..++|+|++++|.....+.    
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~----   81 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV----   81 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH----
Confidence            58999999999997 88888754 67775 7888765421      333566787776789999999996654331    


Q ss_pred             HHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          241 QVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       241 ~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                       ....++.|. +++.- ..-.+-+.++|.++.++.++.
T Consensus        82 -~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           82 -VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             -HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence             223344564 66662 344556777888888877654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.84  E-value=2e-05  Score=70.58  Aligned_cols=105  Identities=15%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CC---cccCCHHHHh-hcCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SY---PFYSNVCELA-ANCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~---~~~~~l~e~l-~~aDvV~l~~p~~~~t~  235 (300)
                      .+.|+++.|+|.|.||+++|+.|...|.+|++++|+.+...      +.   ....+++++. .++|+|+.++|......
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~  195 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD  195 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCC
Confidence            36789999999999999999999999999999999854211      10   0112333333 58999999999754311


Q ss_pred             -hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          236 -HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       236 -~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                       .-+..   ..++++.+++|+...+ ..+. +.+..++..+
T Consensus       196 ~~~i~~---~~l~~~~~v~D~~y~p-~~t~-~~~~a~~~G~  231 (271)
T 1nyt_A          196 IPAIPS---SLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGS  231 (271)
T ss_dssp             CCCCCG---GGCCTTCEEEESCCCS-SCCH-HHHHHHHTTC
T ss_pred             CCCCCH---HHcCCCCEEEEeccCC-cCCH-HHHHHHHcCC
Confidence             01222   3367899999999875 3333 4444444433

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.83  E-value=2.8e-06  Score=76.88  Aligned_cols=91  Identities=18%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC---cccCCHHHHh-hcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY---PFYSNVCELA-ANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~---~~~~~l~e~l-~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.+..     .+.   ....+..+.+ ..+|+|++++|.. .++.++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            589999999999999999998899999999875321     111   0112334444 7899999999855 444444 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC
Q 022233          241 QVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~vd  262 (300)
                      ++...++++.++|.+.-|=-..
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCCG
T ss_pred             HHHHhhCCCCEEEEeccCcccH
Confidence            4445567888999998775433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.83  E-value=1.1e-05  Score=64.53  Aligned_cols=86  Identities=12%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc----cCC---HHHH-hhcCCEEEEecCCChhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF----YSN---VCEL-AANCDILIICCGLTAET  234 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~----~~~---l~e~-l~~aDvV~l~~p~~~~t  234 (300)
                      .++++.|+|+|.+|+.+|+.|...|++|.+++++++..     .+...    ..+   +.++ +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            45789999999999999999999999999999875421     12110    112   2222 46899999999843332


Q ss_pred             hhcchHHHHhcCCCCcEEEEc
Q 022233          235 HHMINKQVLSALGKEGVVINI  255 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~  255 (300)
                      .  ........+....+++-+
T Consensus        85 ~--~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           85 L--KILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             H--HHHHHHHHHCCCCEEEEE
T ss_pred             H--HHHHHHHHhCCceEEEEE
Confidence            2  333444445544444433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.81  E-value=2.7e-05  Score=71.27  Aligned_cols=100  Identities=12%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSYPFYSNVCELAA--NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~  239 (300)
                      .+|||||+|.||+.+++.+... ++++. ++|++++..      .+.. +.+++++++  +.|+|++++|.....+  +-
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~--~~   80 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHAD--LI   80 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHH--HH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHH--HH
Confidence            4899999999999999999976 67876 688876431      1344 789999998  7999999999765544  21


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCc
Q 022233          240 KQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       240 ~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i  275 (300)
                      ...   ++.|. +++.- ..-.+-+.++|.++.++.++
T Consensus        81 ~~a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  115 (331)
T 4hkt_A           81 ERF---ARAGKAIFCEKPIDLDAERVRACLKVVSDTKA  115 (331)
T ss_dssp             HHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             HHH---HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            222   22332 33332 23334455556666555444

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.81  E-value=4.6e-05  Score=68.79  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CCcc--cCCHHHHhhcCCEEEEecC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SYPF--YSNVCELAANCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~~~--~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+.|+++.|+|.|.+|++++..|...|. +|.+++|+.+...             ....  ..++++.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4779999999999999999999999999 7999999865321             0111  2378888999999999999


Q ss_pred             CChhhh--hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          230 LTAETH--HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       230 ~~~~t~--~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..-...  -.++   .+.++++.+++|+.-.+ ..+.-|.+|-+.|
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G  245 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG  245 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc
Confidence            642211  1233   34578899999998765 3455555555555

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.79  E-value=2.4e-05  Score=72.04  Aligned_cols=101  Identities=13%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSYPFYSNVCELAA--NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~  239 (300)
                      .+|||||+|.||+.+++.++.. ++++. ++++++...      .+...+.+++++++  +.|+|++++|.....+..  
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   82 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI--   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH--
Confidence            4899999999999999999876 67775 688875431      24455789999998  899999999976554422  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCc
Q 022233          240 KQVLSALGKE-GVVINIG-RGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       240 ~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~~~i  275 (300)
                      ...++   .| .+++.-- .-.+-+.++|.++.++.++
T Consensus        83 ~~al~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  117 (344)
T 3euw_A           83 TRAVE---RGIPALCEKPIDLDIEMVRACKEKIGDGAS  117 (344)
T ss_dssp             HHHHH---TTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred             HHHHH---cCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            22222   23 2444322 2333445555555554433

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.77  E-value=3.9e-05  Score=70.98  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCcccCCHHHHh--hcCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSYPFYSNVCELA--ANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~e~l--~~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+.+++.++.. ++++. ++|+++...      .+...+.++++++  .+.|+|++++|.....+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   81 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAE   81 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            4899999999999999999987 77865 778876432      1444578999999  56899999999765544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.75  E-value=2.7e-05  Score=74.53  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CCC-------------CcccCCHHHHhhcCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SVS-------------YPFYSNVCELAANCD  222 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~~-------------~~~~~~l~e~l~~aD  222 (300)
                      +-++|+|||+|-+|..+|..++..|++|+++|.+++.            +.+             ..+..+.++.+++||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            3469999999999999999999999999999976532            001             112457788999999


Q ss_pred             EEEEecCCChh------hhhcc--hHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHH
Q 022233          223 ILIICCGLTAE------THHMI--NKQVLSALG---KEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       223 vV~l~~p~~~~------t~~li--~~~~l~~mk---~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      ++++|+|....      ...+.  .+...+.|+   +|.++|.-|+-.+=-.+.+...+
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~  158 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARA  158 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHH
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHH
Confidence            99999984211      11111  123334443   68899999998887666665443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.75  E-value=0.00012  Score=67.06  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCCC------CCc-ccCCHHHHhh--cCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV------SYP-FYSNVCELAA--NCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~------~~~-~~~~l~e~l~--~aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.||+.+++.++.. ++++. ++++++....      +.. .+.+++++++  +.|+|++++|....
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH   80 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            5899999999999999998865 45664 6788765432      232 4679999998  79999999996554

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.75  E-value=4.1e-05  Score=70.18  Aligned_cols=102  Identities=18%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCC-cccCCHHHHhh--cCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSY-PFYSNVCELAA--NCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~-~~~~~l~e~l~--~aDvV~l~~p~~~~t~~l  237 (300)
                      ..+|||||+|.||+.+++.++.. +++|. ++|+++...      .+. ..+.+++++++  +.|+|++++|.....+..
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   84 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA   84 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHH
Confidence            35899999999999999999985 66775 678876432      133 35689999998  799999999976543321


Q ss_pred             chHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCc
Q 022233          238 INKQVLSALGKE-GVVINIG-RGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       238 i~~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~~~i  275 (300)
                        ...   ++.| .+++.-- .-.+-+.++|.++.++.++
T Consensus        85 --~~a---l~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~  119 (330)
T 3e9m_A           85 --KLA---LSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV  119 (330)
T ss_dssp             --HHH---HHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             --HHH---HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence              222   2233 2444322 3344455566666655544

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.74  E-value=0.00012  Score=65.00  Aligned_cols=101  Identities=14%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEE-EEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSI-SYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V-~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      -+.++|+++|+|+||+.+++.  . ++++ .+|+ ......+.....+++++++++|+|+=|.+ .+.    +.+.....
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~a----v~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECAS-PEA----VKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSC-HHH----HHHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCC-HHH----HHHHHHHH
Confidence            457899999999999999998  4 7876 4666 22111244445778999889999888763 222    33445677


Q ss_pred             CCCCcEEEEcCCCcccCH---HHHHHHHHhCCce
Q 022233          246 LGKEGVVINIGRGPIIDE---QELVRCLVQGEIK  276 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~---~aL~~aL~~~~i~  276 (300)
                      ++.|.-+|-+|-|.+.|.   +.|.++.++|+-.
T Consensus        81 L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            899999999999998887   5666666776543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.73  E-value=8.8e-05  Score=68.37  Aligned_cols=64  Identities=14%  Similarity=0.099  Sum_probs=50.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEEEec--
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILIICC--  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~l~~--  228 (300)
                      .++|+|||.|.+|..+|..|...|+ +|..||++.+...               .  .....++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4699999999999999999998887 9999998764211               1  111357888899999999998  


Q ss_pred             CCCh
Q 022233          229 GLTA  232 (300)
Q Consensus       229 p~~~  232 (300)
                      |..+
T Consensus        89 p~~~   92 (331)
T 1pzg_A           89 TKVP   92 (331)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            6443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.73  E-value=8.6e-05  Score=60.13  Aligned_cols=88  Identities=8%  Similarity=0.009  Sum_probs=58.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---------CCCCc-------ccCCHHHH-hhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---------SVSYP-------FYSNVCEL-AANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---------~~~~~-------~~~~l~e~-l~~aDvV~l~~p~~  231 (300)
                      ++++.|+|+|.+|+.+++.|...|++|++.++++..         ..+..       ....+.++ +.++|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            568999999999999999999999999999886310         11111       11234554 78999999999865


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      +.+.  .-......+.+...+|...+.
T Consensus        83 ~~n~--~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           83 ADNA--FVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHH--HHHHHHHHHTSSSCEEEECSS
T ss_pred             HHHH--HHHHHHHHHCCCCEEEEEECC
Confidence            4433  334445555444444443333

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.73  E-value=3.7e-05  Score=71.11  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhh--cCCEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAA--NCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~--~aDvV~l~~p~~~~  233 (300)
                      -.+|||||+|.||+..++.++..  ++++. ++|++++..      .+...+.+++++++  +.|+|++++|....
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            35899999999999999999987  77865 788876432      14455789999997  79999999996644

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.72  E-value=1.6e-05  Score=72.42  Aligned_cols=62  Identities=24%  Similarity=0.370  Sum_probs=48.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC---------------CCcc-cCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV---------------SYPF-YSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~---------------~~~~-~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.+...               .... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999999888  68999998753210               0111 2456 7789999999999864


Q ss_pred             h
Q 022233          232 A  232 (300)
Q Consensus       232 ~  232 (300)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.71  E-value=4.7e-05  Score=69.50  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CEEEEEecChhHHHH-HHHHHhCCCEEE-EECCCCCCC------CCC-cccCCHHHHhh--cCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVGLGSIGSLV-AKRLDAFGCSIS-YNSRTKKPS------VSY-PFYSNVCELAA--NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~-A~~l~~~g~~V~-~~~~~~~~~------~~~-~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li  238 (300)
                      .+|||||+|.||+.+ ++.+...++++. ++++++...      .+. ..+.+++++++  ++|+|++++|......   
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---   77 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---   77 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH---
Confidence            379999999999998 877777778865 778875431      133 24678999987  4999999999554322   


Q ss_pred             hHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCc
Q 022233          239 NKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       239 ~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i  275 (300)
                        -....++.|. +++.- ....+-+.++|.++.++.++
T Consensus        78 --~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           78 --QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             --HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence              1223344554 44442 22344445566666655443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.70  E-value=8e-05  Score=69.94  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=74.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC-----C-C-CCC-----------CcccCCHHHHhhcCCEE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK-----K-P-SVS-----------YPFYSNVCELAANCDIL  224 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~-----~-~-~~~-----------~~~~~~l~e~l~~aDvV  224 (300)
                      |..+...+|.|+|.|..|..+|+.+..+|. +|+.+|++.     + . ...           .....+|+|+++.+|++
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            456888899999999999999999999999 999998762     1 1 111           01135799999999988


Q ss_pred             EEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          225 IICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       225 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      +=.-     ..+++.++.++.|+++++++.+|....
T Consensus       263 IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          263 IGVS-----APGVLKAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             EECC-----STTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             EecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence            7762     258899999999999999999998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.70  E-value=0.0001  Score=70.34  Aligned_cols=106  Identities=16%  Similarity=0.248  Sum_probs=78.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC---EEEEEC----CC----CCCC----CCC-----c------ccCCHHHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC---SISYNS----RT----KKPS----VSY-----P------FYSNVCEL  217 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~---~V~~~~----~~----~~~~----~~~-----~------~~~~l~e~  217 (300)
                      |.++.++++.|+|.|..|+++++.|...|.   +|+++|    |+    ....    ...     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            445789999999999999999999999998   799888    76    2211    100     0      13468899


Q ss_pred             hhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          218 AANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       218 l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ++++|+|+.+.|..+   +++.++.++.|+++.++++++..  ..|.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            999999999988632   34555677889999999999543  34555555555554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.70  E-value=6.9e-05  Score=68.69  Aligned_cols=105  Identities=18%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC---CCC----------CC----cccC---CHHHHhhcCCEE
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK---PSV----------SY----PFYS---NVCELAANCDIL  224 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~---~~~----------~~----~~~~---~l~e~l~~aDvV  224 (300)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.+   ...          +.    ..+.   ++.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            4789999999999999999999999999 8999999832   110          10    1112   255678899999


Q ss_pred             EEecCCCh--hhh-hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          225 IICCGLTA--ETH-HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       225 ~l~~p~~~--~t~-~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      |.++|..-  ... ..+.  ....++++.+++|+.-.+. .+.-|.+|-+.|
T Consensus       231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  279 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-KTRLLEIAEEQG  279 (315)
T ss_dssp             EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            99999642  211 1121  2345788999999987663 444444444443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.69  E-value=3.3e-05  Score=70.29  Aligned_cols=101  Identities=13%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEE-EEECCCCCCCC----CCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSI-SYNSRTKKPSV----SYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V-~~~~~~~~~~~----~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      .+|||||+|.||+.+++.+... ++++ .++++++....    ....+.+++++++  ++|+|++++|......  +   
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--~---   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAE--I---   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHH--H---
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHH--H---
Confidence            4899999999999999999876 5665 47887654211    1334578999986  7999999999654433  1   


Q ss_pred             HHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEG-VVIN-IGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga-~lIn-~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ....++.|. +++. ...-.+-+.++|.++.++.++
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            223345564 5666 233345566778887776554

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.68  E-value=0.00017  Score=65.27  Aligned_cols=104  Identities=20%  Similarity=0.289  Sum_probs=70.3

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCC--CCCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKK--PSVSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~--~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ..+|+|+|+ |+||+.+++.++..|+++. ..++...  ...+...+.+++|+.+  ..|++++++|.... ...+ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~-~~~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHH-HHHH-HHH
Confidence            468999999 9999999999998899854 4565421  2234556789999998  89999999995433 3333 222


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGP-IIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~-~vd~~aL~~aL~~~~i~  276 (300)
                      ++. ... .+|..+.|- .-+.+.|.++.++..+.
T Consensus        85 ~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 IDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            221 222 334455553 33556888888887664

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.66  E-value=0.00015  Score=63.99  Aligned_cols=82  Identities=17%  Similarity=0.252  Sum_probs=57.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGK  248 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~  248 (300)
                      ++|+|+|+|+||+.+++.+...+.++. +++++.....+...+.++++++ ++|+|+-..+. ..+.     +.+. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH-Hhc
Confidence            589999999999999999997765765 4788765444566677888888 99998844421 1222     2233 777


Q ss_pred             CcEEEEcCCCc
Q 022233          249 EGVVINIGRGP  259 (300)
Q Consensus       249 ga~lIn~srg~  259 (300)
                      |.-+|....|-
T Consensus        76 g~~vVigTTG~   86 (243)
T 3qy9_A           76 HLPLVVATTGE   86 (243)
T ss_dssp             CCCEEECCCSS
T ss_pred             CCceEeCCCCC
Confidence            77677666663

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.65  E-value=4.5e-05  Score=68.84  Aligned_cols=103  Identities=14%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC----CC--cccCCHHHHhhcCCEEEEecCCC--hhhh-
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV----SY--PFYSNVCELAANCDILIICCGLT--AETH-  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~----~~--~~~~~l~e~l~~aDvV~l~~p~~--~~t~-  235 (300)
                      ++.|+++.|+|.|.+|++++..|...|. +|++++|+.+...    ..  ..+.++.+ + ++|+||.++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4679999999999999999999999998 8999999864321    11  11223334 4 899999999974  2211 


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      -.++.+.   ++++.+++|+.-.+. .+. |.++.++..+
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P~-~T~-ll~~A~~~G~  231 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNPV-ETL-FLKYARESGV  231 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSSS-SCH-HHHHHHHTTC
T ss_pred             CCCCHHH---cCCCCEEEEEeeCCC-CCH-HHHHHHHCcC
Confidence            1245444   468899999986653 344 4444444433

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.62  E-value=0.0001  Score=67.76  Aligned_cols=100  Identities=17%  Similarity=0.309  Sum_probs=65.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCCC------CC-cccCCHHHHhh--cCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV------SY-PFYSNVCELAA--NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li  238 (300)
                      .+|||||+|.||+.+++.+... ++++. ++|+++....      +. ..+.+++++++  ++|+|++++|......  +
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~--~   80 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSE--L   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHH--H
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHH--H
Confidence            4899999999999999999875 67775 6788754321      32 25689999998  7999999999655433  1


Q ss_pred             hHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCC
Q 022233          239 NKQVLSALGKE-GVVINIG-RGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       239 ~~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~~~  274 (300)
                      -...   ++.| .+++.-- .-.+-+.++|.++.++.+
T Consensus        81 ~~~a---l~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g  115 (344)
T 3ezy_A           81 VIAC---AKAKKHVFCEKPLSLNLADVDRMIEETKKAD  115 (344)
T ss_dssp             HHHH---HHTTCEEEEESCSCSCHHHHHHHHHHHHHHT
T ss_pred             HHHH---HhcCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            1222   3334 2444432 334445556666555443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.62  E-value=6.7e-05  Score=68.87  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             CEEEEEecChhHHHHHHHHH-hC-CCEE-EEECCCCCCC------CCC-cccCCHHHHhh--cCCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLD-AF-GCSI-SYNSRTKKPS------VSY-PFYSNVCELAA--NCDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~-~~-g~~V-~~~~~~~~~~------~~~-~~~~~l~e~l~--~aDvV~l~~p~~~~t~~l  237 (300)
                      .+|||||+|.||+.+++.++ .. ++++ .++++++...      .+. ..+.+++++++  ++|+|++++|......  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            58999999999999999988 53 6775 5678875431      133 34678999987  6999999998654433  


Q ss_pred             chHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhC-Cce
Q 022233          238 INKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQG-EIK  276 (300)
Q Consensus       238 i~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~-~i~  276 (300)
                         .....++.|. +++.- ....+-+.++|.++.++. ++.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               2223345564 44431 122334455677777776 553

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.59  E-value=0.00022  Score=65.55  Aligned_cols=60  Identities=27%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++|+|||.|.||..+|..+...|+ +|..+|++.+...               .  .....++ +.+++||+|+++++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            3699999999999999999999898 9999999764311               1  1112456 78999999999983

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.59  E-value=8.2e-05  Score=69.06  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCC-----CCCCcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKP-----SVSYPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~-----~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+..++.++.. +++|. ++|+++..     ..+...+.+++++++  +.|+|++++|.....+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKE   80 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            5899999999999999999876 67875 67876543     124556789999998  7899999999755433

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.59  E-value=0.00016  Score=66.13  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEE-EEECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSI-SYNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V-~~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      .+|||||+|+||+.+++.+... ++++ .+++++.....  +...+.++++++.++|+|++++|......     .....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~~-----~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHHH-----HHHHH
Confidence            4899999999999999999876 5675 46777643321  22234677888888999999998654322     23445


Q ss_pred             CCCCcEEEEcCCCcc--cCH-HHHHHHHHhCC
Q 022233          246 LGKEGVVINIGRGPI--IDE-QELVRCLVQGE  274 (300)
Q Consensus       246 mk~ga~lIn~srg~~--vd~-~aL~~aL~~~~  274 (300)
                      ++.|.-+|...-..+  -+. +.|.++.+++.
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            666776666544332  233 45677766655

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.57  E-value=6.3e-05  Score=68.89  Aligned_cols=89  Identities=22%  Similarity=0.360  Sum_probs=59.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCc-ccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------------SYP-FYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------------~~~-~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|||.|.||..+|..|...|.  +|..+|++++...              ... ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999998888  9999998753211              001 1123 356899999999999643


Q ss_pred             h---hh-hc------chHHHHhc---CCCCcEEEEcCCCc
Q 022233          233 E---TH-HM------INKQVLSA---LGKEGVVINIGRGP  259 (300)
Q Consensus       233 ~---t~-~l------i~~~~l~~---mk~ga~lIn~srg~  259 (300)
                      .   ++ .+      +-.+.++.   ..+++++|+++-+.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcH
Confidence            1   01 00      01222222   25788888885543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.57  E-value=2.3e-05  Score=70.62  Aligned_cols=104  Identities=19%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCC----------c-----ccCCHHHHhhcCCEEEEecCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY----------P-----FYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~----------~-----~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++.|+++.|+|.|.||+++|+.|...| +|++++|+.+.....          .     ...++.+.+.++|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            467899999999999999999999999 999999875421100          0     011224567789999999986


Q ss_pred             Chhhh---hcc-hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          231 TAETH---HMI-NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       231 ~~~t~---~li-~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      .....   ..+ +   .+.++++.+++|++..+ ..+ .|.+..++.++
T Consensus       204 ~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~  247 (287)
T 1nvt_A          204 GMYPNIDVEPIVK---AEKLREDMVVMDLIYNP-LET-VLLKEAKKVNA  247 (287)
T ss_dssp             TCTTCCSSCCSSC---STTCCSSSEEEECCCSS-SSC-HHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCC---HHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCC
Confidence            54211   012 2   35678999999999854 333 35555555444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.57  E-value=4.8e-05  Score=65.37  Aligned_cols=85  Identities=9%  Similarity=0.050  Sum_probs=56.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYP-------FYSNVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      ++|.|+|+|.+|+.+|+.|...|.+|++++++++..      .+..       ....++++ +.+||+|++++|....+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            479999999999999999999999999999876421      1111       11224444 678999999998655433


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                        +-......+.+...+|-..
T Consensus        81 --~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           81 --FIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             --HHHHHHHHTSCCCEEEECC
T ss_pred             --HHHHHHHHHcCCCeEEEEE
Confidence              3333444433344444433

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.56  E-value=9.7e-05  Score=68.35  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=64.7

Q ss_pred             CCEEEEEecChhHH-HHHHHHHhC-CCEEE-EECCCCCCCC------CCcccCCHHHHhh--cCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGS-LVAKRLDAF-GCSIS-YNSRTKKPSV------SYPFYSNVCELAA--NCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~-~~A~~l~~~-g~~V~-~~~~~~~~~~------~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~l  237 (300)
                      -.+|||||+|.||+ .+++.++.. +++|. +++++++...      +...+.+++++++  +.|+|++++|.....+  
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~--  104 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE--  104 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH--
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            46899999999999 789999877 67775 6787654321      4444579999997  5899999999665433  


Q ss_pred             chHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCc
Q 022233          238 INKQVLSALGKE-GVVINIG-RGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       238 i~~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~~~i  275 (300)
                      +-...   ++.| .+++.-- --.+-+.++|.++.++.++
T Consensus       105 ~~~~a---l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~  141 (350)
T 3rc1_A          105 WIDRA---LRAGKHVLAEKPLTTDRPQAERLFAVARERGL  141 (350)
T ss_dssp             HHHHH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHH---HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            21222   2233 2444321 2334455555555544433

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.54  E-value=0.00015  Score=57.16  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             CEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      ++|+|||.    |+.|..+.+.|+..|++|+-.++......+...+.++.|+-. -|++++++|. +.+..++. +..+ 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~-e~~~-   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYN-YILS-   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHH-HHHH-
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHH-HHHh-
Confidence            58999998    569999999999999999988887665556666788888888 9999999984 44555553 3333 


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      +...++|++.+.    .++++.+.+++..+.-
T Consensus        81 ~g~k~v~~~~G~----~~~e~~~~a~~~Girv  108 (122)
T 3ff4_A           81 LKPKRVIFNPGT----ENEELEEILSENGIEP  108 (122)
T ss_dssp             HCCSEEEECTTC----CCHHHHHHHHHTTCEE
T ss_pred             cCCCEEEECCCC----ChHHHHHHHHHcCCeE
Confidence            334467765432    3567778888877763

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.54  E-value=0.00016  Score=65.71  Aligned_cols=100  Identities=19%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCCC--CCc--ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV--SYP--FYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~--~~~--~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .+|||||+|+||+.+++.++.. ++++. ++++++....  +..  .+.++.+. .++|+|++++|.....+     ...
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~-----~~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVER-----TAL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH-----HHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHH-----HHH
Confidence            5899999999999999999874 67876 6888765322  222  23455555 78999999998544332     223


Q ss_pred             hcCCCCcEEEEcCC--C-cccCHHHHHHHHHhCCc
Q 022233          244 SALGKEGVVINIGR--G-PIIDEQELVRCLVQGEI  275 (300)
Q Consensus       244 ~~mk~ga~lIn~sr--g-~~vd~~aL~~aL~~~~i  275 (300)
                      ..++.|.-+++..-  + .+.+.+.|.++.++.++
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            44566777776532  2 33455677777777554

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.54  E-value=0.00039  Score=62.83  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=70.5

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCC--CCCCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTK--KPSVSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~--~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      .++|+|+|+ |++|+.+++.++..|+++. ..++..  ....+...+.+++|+.+  ..|++++++|.. .+...+. +.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~~-ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAAL-EA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHHH-HH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHHH-HH
Confidence            568999999 9999999999998899854 556554  11235556789999998  899999999843 3333333 22


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGP-IIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~-~vd~~aL~~aL~~~~i~  276 (300)
                      .+. ... .+|..+.|= ..+++.+.++.++..+.
T Consensus        85 ~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            221 222 244555552 23566888888877664

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.53  E-value=0.00012  Score=66.76  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             CEEEEEecChhHH-HHHHHHHhC-CCEEEEECCCCCCC------CCCcc-cCCHHHHh-hcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGS-LVAKRLDAF-GCSISYNSRTKKPS------VSYPF-YSNVCELA-ANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~-~~A~~l~~~-g~~V~~~~~~~~~~------~~~~~-~~~l~e~l-~~aDvV~l~~p~~~~t~~li~  239 (300)
                      .+|||||+|.||+ .+++.++.. ++++.+++++++..      .+... +.+..+++ .++|+|++++|.....+  + 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~--~-   79 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--L-   79 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--H-
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH--H-
Confidence            4899999999999 499988765 67877888876431      12222 33444555 78999999999544322  1 


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                        ....++.|. +++.- .--.+-+.++|.++.++.++.
T Consensus        80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence              223344453 66653 233445667788887776654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.52  E-value=0.00033  Score=64.08  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=63.9

Q ss_pred             CEEEEEecChhHH-HHHHHHHhCCCEE-EEECCCCCCCC-------CCcccCCHHHHhh--cCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVGLGSIGS-LVAKRLDAFGCSI-SYNSRTKKPSV-------SYPFYSNVCELAA--NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~G~IG~-~~A~~l~~~g~~V-~~~~~~~~~~~-------~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li  238 (300)
                      .+|||||+|.+|. .+++.++..|++| .++|+++....       +...+.+++++++  +.|+|++++|.....+.  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~--   82 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL--   82 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH--
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH--
Confidence            5899999999996 6788777678886 57888765431       2345689999997  58999999996544331  


Q ss_pred             hHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCC
Q 022233          239 NKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       239 ~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~  274 (300)
                         ....++.|. +++.- ..-.+-+.++|.++.++.+
T Consensus        83 ---~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g  117 (336)
T 2p2s_A           83 ---ALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETG  117 (336)
T ss_dssp             ---HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence               222333443 44442 2223334445555554433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.52  E-value=0.00029  Score=64.66  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .++|+|||.|.||..+|..+...|+ +|..+|.+.+...               .  .....++ +.+++||+|++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3589999999999999999998888 8999998764211               1  1112466 7899999999998

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.50  E-value=0.00016  Score=65.74  Aligned_cols=107  Identities=15%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------C------Ccc-cCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------S------YPF-YSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------~------~~~-~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|||.|.||..+|..|...|.  +|..+|++.+...        .      ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  9999998753110        0      011 123 367899999999995332


Q ss_pred             h-----------hhhcchHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          233 E-----------THHMINKQ---VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       233 ~-----------t~~li~~~---~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      .           +-.++ ++   .+....+++++|+++-+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIF-RELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHH-HHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHH-HHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           11111 11   2222368899999765543334444444444566444

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.50  E-value=6.1e-05  Score=68.52  Aligned_cols=101  Identities=20%  Similarity=0.351  Sum_probs=64.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCccc---------CCH-HHHhhcCCEEEEecCCChhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFY---------SNV-CELAANCDILIICCGLTAET  234 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~---------~~l-~e~l~~aDvV~l~~p~~~~t  234 (300)
                      ++|+|||.|.||..+|..|. .|.+|.+++|+....     .+....         .+. .+....+|+|+++++.. ++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            69999999999999999999 899999999875321     011100         001 24567899999999854 33


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ..++  +.++.+.++. +|.+.-|=- .++.|.+.+-..++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            4333  2333345666 888866632 233444444444443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.48  E-value=0.00028  Score=64.23  Aligned_cols=60  Identities=23%  Similarity=0.375  Sum_probs=46.5

Q ss_pred             CEEEEEecChhHHHHHHHHHh--CCCEEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA--FGCSISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~--~g~~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|||.|.||..+|..|..  +|.+|..+|++++...               .  .....++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            489999999999999999987  5789999999764211               0  011245666 8999999999974

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.47  E-value=0.00015  Score=67.50  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----C-------CCcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----V-------SYPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      =+.++|+|+|.|.+|+.+|+.|+. ..+|.+.+++.+..    .       .+....++.++++++|+|+.++|..-...
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~   92 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFK   92 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccch
Confidence            345689999999999999999976 47888887764321    0       12223457788999999999998542211


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                        +-+   ..++.|.-+||++ ...-+..+|.+..++.++
T Consensus        93 --v~~---~~~~~g~~yvD~s-~~~~~~~~l~~~a~~~g~  126 (365)
T 3abi_A           93 --SIK---AAIKSKVDMVDVS-FMPENPLELRDEAEKAQV  126 (365)
T ss_dssp             --HHH---HHHHHTCEEEECC-CCSSCGGGGHHHHHHTTC
T ss_pred             --HHH---HHHhcCcceEeee-ccchhhhhhhhhhccCCc
Confidence              212   2345566777775 233334444444444433

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.46  E-value=0.00018  Score=66.80  Aligned_cols=66  Identities=14%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS----VSYPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+. .++.++.. +++|. +++++++..    .+...+.+++++++  +.|+|++++|.....+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~   82 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAP   82 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            48999999999997 77777765 67875 678775431    13445689999998  7899999999755433

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.46  E-value=0.0002  Score=66.31  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=51.6

Q ss_pred             CCEEEEEecChhHHHHHHHHH-h-CCCEEE-EECCCCCCCC------C--CcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLD-A-FGCSIS-YNSRTKKPSV------S--YPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~-~-~g~~V~-~~~~~~~~~~------~--~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      ..+|||||+|.||+..++.+. . -++++. ++|+++....      +  ...+.+++++++  +.|+|++++|.....+
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~  102 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHAD  102 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            458999999999999999998 4 367765 6888765421      3  445789999998  4899999999665433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.43  E-value=0.00012  Score=67.26  Aligned_cols=66  Identities=23%  Similarity=0.357  Sum_probs=50.9

Q ss_pred             CEEEEEecChhHHHHHHHHH-h-CCCEEE-EECCCCCCC------CC--CcccCCHHHHhhc--CCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLD-A-FGCSIS-YNSRTKKPS------VS--YPFYSNVCELAAN--CDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~-~-~g~~V~-~~~~~~~~~------~~--~~~~~~l~e~l~~--aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+..++.++ . -++++. ++|+++...      .+  ...+.++++++++  .|+|++++|.....+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   81 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES   81 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence            48999999999999999998 5 367765 678875431      13  3457899999986  899999999665433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.40  E-value=0.00035  Score=60.83  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=59.6

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CCccc-CC-HHHHhhcCCEEEEecCC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SYPFY-SN-VCELAANCDILIICCGL  230 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~~~~-~~-l~e~l~~aDvV~l~~p~  230 (300)
                      |+  .-++.|++|.|||.|.+|..-++.|...|.+|+++++...+..       ..... .. .++.+.++|+|+.++. 
T Consensus        24 Pi--fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-  100 (223)
T 3dfz_A           24 TV--MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-  100 (223)
T ss_dssp             EE--EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-
T ss_pred             cc--EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-
Confidence            66  6789999999999999999999999999999999987643210       11100 11 1345788999887754 


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .++..    .......+ -.++||+.
T Consensus       101 d~~~N----~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          101 DQAVN----KFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             CTHHH----HHHHHHSC-TTCEEEC-
T ss_pred             CHHHH----HHHHHHHh-CCCEEEEe
Confidence            44433    33333344 44667764

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.39  E-value=0.00062  Score=62.00  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=73.9

Q ss_pred             ccCCCEEEEE-ec-ChhHHHHHHHHHhCCCEEE-EECCCCC--CCCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcc
Q 022233          166 KLGGKRVGIV-GL-GSIGSLVAKRLDAFGCSIS-YNSRTKK--PSVSYPFYSNVCELAA--NCDILIICCGLTAETHHMI  238 (300)
Q Consensus       166 ~l~g~~vgIi-G~-G~IG~~~A~~l~~~g~~V~-~~~~~~~--~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li  238 (300)
                      -+..++++|| |+ |++|+.+++.++..|++++ ..++...  ...+...+.+++|+.+  ..|++++++|.. .....+
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHH
Confidence            3667899999 99 9999999999999999854 4555431  2235566779999998  899999999953 333333


Q ss_pred             hHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhC-Cce
Q 022233          239 NKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQG-EIK  276 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~-~i~  276 (300)
                      .+ ..+. .- ..+|+.+-|-. -++..+.+.+++. .+.
T Consensus        89 ~e-~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           89 NE-AIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HH-HHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HH-HHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            32 2221 11 24466777643 3455889988887 664

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.39  E-value=0.00034  Score=63.38  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CC--cccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SY--PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~--~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|||.|.+|.++|..|...|.  +|..+|++++...               ..  ....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999998887  8999998764210               11  11235 7899999999999754


Q ss_pred             Ch---hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----hCCceEEE--ee
Q 022233          231 TA---ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQELVRCLV----QGEIKGAG--LD  281 (300)
Q Consensus       231 ~~---~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~----~~~i~~a~--LD  281 (300)
                      ..   .++ .++  |.       +.+....|.+++++++  .++|.-..+-.-.    ..++.|.+  ||
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            31   111 111  11       1234457899999998  6777655443222    24666664  55

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.37  E-value=0.00038  Score=62.31  Aligned_cols=101  Identities=15%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhh----hh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAET----HH  236 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t----~~  236 (300)
                      .++++.|||.|.+|++++..|...|. +|++++|+.+...      +.....++.  +.++|+|+.++|..-..    ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            36799999999999999999999998 7999999864321      111111222  46899999999975421    11


Q ss_pred             -cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          237 -MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       237 -li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                       .+..+.   ++++.+++|+.-.+ ..+ .|.+..++.++
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~  230 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMP-VET-PFIRYAQARGK  230 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSS-SSC-HHHHHHHHTTC
T ss_pred             CCCCHHH---cCCCCEEEEeecCC-CCC-HHHHHHHHCCC
Confidence             134333   45688999999855 344 55555555544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.35  E-value=0.0002  Score=65.10  Aligned_cols=89  Identities=16%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------CC------cc-c-CCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------SY------PF-Y-SNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------~~------~~-~-~~l~e~l~~aDvV~l~~p~  230 (300)
                      .++|+|||.|.||..+|..|...|.  +|.+++++.+...        +.      .. . .+ .+.+++||+|+++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGP   85 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCC
Confidence            4699999999999999999999898  9999998752210        10      00 1 13 3567899999999953


Q ss_pred             Chh---hh--------hc---chHHHHhcCCCCcEEEEcCCCc
Q 022233          231 TAE---TH--------HM---INKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       231 ~~~---t~--------~l---i~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ...   ++        .+   +-+.+.+ ..+++++|+++-|-
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i~~-~~~~~~vi~~~Np~  127 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNLVK-VAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCceEEEecCch
Confidence            211   10        01   1122222 36788999986654

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.34  E-value=0.00027  Score=64.67  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC---CEE-EEECCCCCCCC------CC-cccCCHHHHhh--cCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG---CSI-SYNSRTKKPSV------SY-PFYSNVCELAA--NCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g---~~V-~~~~~~~~~~~------~~-~~~~~l~e~l~--~aDvV~l~~p~~~~t~~  236 (300)
                      .++||||+|.||+..++.++..+   +++ .+++++.....      +. ..+.+++++++  +.|+|++++|.....+ 
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~-   81 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA-   81 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH-
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH-
Confidence            48999999999999999998664   455 46788754321      33 35689999998  5899999999665433 


Q ss_pred             cchHHHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHhCCc
Q 022233          237 MINKQVLSALGKE-GVVINI-GRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       237 li~~~~l~~mk~g-a~lIn~-srg~~vd~~aL~~aL~~~~i  275 (300)
                       +-...   ++.| .+++.- ---.+-+.++|.++.++.++
T Consensus        82 -~~~~a---l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~  118 (334)
T 3ohs_X           82 -AVMLC---LAAGKAVLCEKPMGVNAAEVREMVTEARSRGL  118 (334)
T ss_dssp             -HHHHH---HHTTCEEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred             -HHHHH---HhcCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence             21222   2333 244442 12334455556665555443

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.33  E-value=0.00041  Score=63.43  Aligned_cols=104  Identities=19%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC---CC----------CC----cccCCH---HHHhhcCCEE
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP---SV----------SY----PFYSNV---CELAANCDIL  224 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~---~~----------~~----~~~~~l---~e~l~~aDvV  224 (300)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.+.   ..          +.    ....++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            4779999999999999999999999998 89999998321   10          11    112344   5678899999


Q ss_pred             EEecCCCh--hhhhcc--hHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          225 IICCGLTA--ETHHMI--NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       225 ~l~~p~~~--~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      |.++|..-  .....+  +   .+.++++.+++|+.-.+. .+.-|.+|-+.|
T Consensus       225 INaTp~Gm~~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  273 (312)
T 3t4e_A          225 TNGTKVGMKPLENESLIGD---VSLLRPELLVTECVYNPH-MTKLLQQAQQAG  273 (312)
T ss_dssp             EECSSTTSTTSTTCCSCCC---GGGSCTTCEEEECCCSSS-SCHHHHHHHHTT
T ss_pred             EECCcCCCCCCCCCcccCC---HHHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            99999752  111111  2   245678999999987663 444444444444

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.33  E-value=0.00026  Score=65.17  Aligned_cols=66  Identities=15%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             CEEEEEecChhHHH-HHH-HHHh-CCCEEE-EECCCCCCCC------CCcccCCHHHHhhc--CCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSL-VAK-RLDA-FGCSIS-YNSRTKKPSV------SYPFYSNVCELAAN--CDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~-~l~~-~g~~V~-~~~~~~~~~~------~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+. .+. .+.. -+++|. ++|+++....      +...+.++++++++  .|+|++++|.....+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            48999999999996 455 3343 467775 7888764321      33456799999986  899999999665433

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.33  E-value=0.00035  Score=63.60  Aligned_cols=87  Identities=11%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-----------CCcccCCHHHHhhcCCEEEEecCCCh---
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-----------SYPFYSNVCELAANCDILIICCGLTA---  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-----------~~~~~~~l~e~l~~aDvV~l~~p~~~---  232 (300)
                      .++|+|||.|.||..+|..+...|.  +|..+|.+.+...           ......++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            4799999999999999999988787  8999998764210           11122466 67899999999973211   


Q ss_pred             -------hhhhcc---hHHHHhcCCCCcEEEEcCC
Q 022233          233 -------ETHHMI---NKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       233 -------~t~~li---~~~~l~~mk~ga~lIn~sr  257 (300)
                             .+..++   -+++-+ ..|.+++|+++-
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGH-YSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEcCC
Confidence                   111111   122222 248899999876

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00019  Score=69.21  Aligned_cols=105  Identities=21%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhC-CCEEEEECCCCCCC------CCCc-------ccCCHHHHhhcCCEEEEecC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF-GCSISYNSRTKKPS------VSYP-------FYSNVCELAANCDILIICCG  229 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~------~~~~-------~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +..+.+++|+|+|.|.+|+.+++.|... |.+|.+++|+....      .+..       ...++.++++++|+|+.++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            4568899999999999999999999987 78999999875321      0111       11245677899999999998


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      ......  +..   ..++.|..+++++--. -+...|.++.++.+
T Consensus        98 ~~~~~~--v~~---a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aG  136 (467)
T 2axq_A           98 YTFHPN--VVK---SAIRTKTDVVTSSYIS-PALRELEPEIVKAG  136 (467)
T ss_dssp             GGGHHH--HHH---HHHHHTCEEEECSCCC-HHHHHHHHHHHHHT
T ss_pred             hhhhHH--HHH---HHHhcCCEEEEeecCC-HHHHHHHHHHHHcC
Confidence            653211  222   2244567777775311 12345555544433

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.30  E-value=0.00013  Score=69.28  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      +++|.|+|+|++|+.+|+.|...|..|++.+++++..     .+..       ....|+++ +.+||+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            4579999999999999999999999999999876431     1211       11234444 688999999998655444


Q ss_pred             hcchHHHHhcCCCCcEEEEcCC
Q 022233          236 HMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~sr  257 (300)
                        .-......+.+...+|--++
T Consensus        84 --~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           84 --QLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             --HHHHHHHHHCTTCEEEEEES
T ss_pred             --HHHHHHHHhCCCCeEEEEEC
Confidence              33445566667755555444

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.28  E-value=0.00052  Score=63.49  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEE-EEECCCCCCC------CC----CcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSI-SYNSRTKKPS------VS----YPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V-~~~~~~~~~~------~~----~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+.+++.+... ++++ .+++++++..      .+    ...+.+++++++  +.|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            4899999999999999998875 5676 4678765421      12    234678999997  5899999998554332


Q ss_pred             hcchHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          236 HMINKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       236 ~li~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                           -....++.|. +++.- -.-.+-+.++|.++.++.++.
T Consensus        87 -----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           87 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                 2233455665 44442 223445667888888877664

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.28  E-value=0.00026  Score=65.70  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             CCEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC------C-CCcccCCHHHHhhcC--CEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS------V-SYPFYSNVCELAANC--DILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~------~-~~~~~~~l~e~l~~a--DvV~l~~p~~~~  233 (300)
                      ..+|||||+|.||+. +++.++.. ++++. ++|+++...      . ....+.++++++++.  |+|++++|....
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            358999999999995 88988876 67775 788875421      1 234568999999865  999999985443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.28  E-value=0.00071  Score=62.35  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCcccCCHHHHhhc--CCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS----VSYPFYSNVCELAAN--CDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+. .++.++.. +++|. +++++++..    .+...+.++++++++  .|+|++++|.....+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   82 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFP   82 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            58999999999997 78888766 67775 678765421    134457899999986  899999999765533

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.22  E-value=0.00066  Score=68.98  Aligned_cols=115  Identities=12%  Similarity=0.140  Sum_probs=82.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------------C------CcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------------S------YPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------------~------~~~~~~l~e~l~~aDv  223 (300)
                      ++|||||.|.||+.+|..+...|++|+.+|.+++...                    .      .....+-.+.+++||+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            6999999999999999999999999999998754200                    0      0011222345889999


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP  287 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP  287 (300)
                      |+=++|-+-+.+.-+-+++-+.++++++|-...++  +.-..|.+.++.. =..+++=-|.+-|
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~p-~r~ig~HFfnP~~  457 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDRP-QLVIGTHFFSPAH  457 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEECCSSTT
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCCc-cccccccccCCCC
Confidence            99999999888877777777889999987655444  3445566665433 2346777676544

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.20  E-value=0.00057  Score=63.87  Aligned_cols=62  Identities=27%  Similarity=0.418  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C-C-----cccC---CHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S-Y-----PFYS---NVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~-~-----~~~~---~l~e~l~~aDvV~l~  227 (300)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++.... . .     ..+.   .+.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            37899999999999999999999999999999887654211 1 0     0112   366788999998653

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.19  E-value=0.0009  Score=61.20  Aligned_cols=110  Identities=19%  Similarity=0.318  Sum_probs=66.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCCC-------C-------cccCCHHHHhhcCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSVS-------Y-------PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~-------~-------~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      .++|+|||.|.+|.++|..+...|.  +|..+|.+.+...+       .       ....+-.+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999998887  89999987643221       0       011123567999999999987532


Q ss_pred             hhhhc-----c--h----HH---HHhcCCCCcEEEEcCCCcccCHHHHHH--H--HHhCCceEE--Eee
Q 022233          233 ETHHM-----I--N----KQ---VLSALGKEGVVINIGRGPIIDEQELVR--C--LVQGEIKGA--GLD  281 (300)
Q Consensus       233 ~t~~l-----i--~----~~---~l~~mk~ga~lIn~srg~~vd~~aL~~--a--L~~~~i~~a--~LD  281 (300)
                      . .+.     +  +    .+   .+....|++++|++  ..++|.-..+-  .  +...++.|.  .||
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            1 111     0  1    11   12223689999997  45565544332  2  233466665  256

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.17  E-value=0.00039  Score=63.51  Aligned_cols=96  Identities=18%  Similarity=0.332  Sum_probs=61.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------C-----CcccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------S-----YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~-----~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|||.|.||.++|..++..|.  +|..+|++.+...          .     .....+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999999987665  8999998753211          0     001123456799999999997754


Q ss_pred             hh-----------hhhcchHHH---HhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 AE-----------THHMINKQV---LSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 ~~-----------t~~li~~~~---l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ..           +-.++ .++   +....|.+++++++  .++|.-+.+
T Consensus        86 ~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~~iv~t--NPv~~~~~~  132 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIF-RSIVESVMASGFQGLFLVAT--NPVDILTYA  132 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHH-HHHHHHHHHHTCCSEEEECS--SSHHHHHHH
T ss_pred             CCCCCCHHHHHHcChHHH-HHHHHHHHHHCCCCEEEEeC--CchHHHHHH
Confidence            21           00111 112   22235788899974  466654433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.17  E-value=0.00049  Score=59.44  Aligned_cols=92  Identities=16%  Similarity=-0.002  Sum_probs=62.1

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCC-CEEEEECCCCCCCC-----C-------CcccCCHHHHhhcCCEEEEecCCCh
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFG-CSISYNSRTKKPSV-----S-------YPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~-----~-------~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ...|+|.|.| .|.||+.+++.|...| ++|.+.+|++....     .       .....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3467999999 6999999999999999 89999888754321     1       1112356678899999998876433


Q ss_pred             hhhhcchHHHHhcCCC--CcEEEEcCCCcc
Q 022233          233 ETHHMINKQVLSALGK--EGVVINIGRGPI  260 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~--ga~lIn~srg~~  260 (300)
                      ...  ....++..|++  ...||++|....
T Consensus       101 ~~~--~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LDI--QANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HHH--HHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hhH--HHHHHHHHHHHcCCCEEEEEeccee
Confidence            221  22344454432  246888887543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.16  E-value=0.00067  Score=62.03  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCccc-CCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFY-SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~-~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||.++|..+...|+  +|..+|+++....               ..... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  8999998764311               01111 24568899999999997643


Q ss_pred             hh---hh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 AE---TH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 ~~---t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ..   ++ .++  |.       +.+....|.+++++++  .++|.-..+
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~  127 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVMTYV  127 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHHHHH
Confidence            11   11 111  11       1233446889999997  556655544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.16  E-value=0.0011  Score=61.26  Aligned_cols=64  Identities=16%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC---C-CCcccCCHHHHhhc--CCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS---V-SYPFYSNVCELAAN--CDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~---~-~~~~~~~l~e~l~~--aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.||+. .+..++.. +++|. +++++++..   . +...+.++++++++  .|+|++++|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            48999999999997 77777766 67775 678775432   1 33456899999987  8999999996544

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.16  E-value=0.0011  Score=59.80  Aligned_cols=100  Identities=19%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CEEEEEecChhHHHHHHHHHh----CCCEEE-EECCCCCCC-CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA----FGCSIS-YNSRTKKPS-VSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~----~g~~V~-~~~~~~~~~-~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      .+|||||+|.||+..++.+..    -++++. +++++.... .+.. +.+++++++  +.|+|++++|.....+  +-. 
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~--~~~-   83 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED--YIR-   83 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH--HHH-
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH--HHH-
Confidence            489999999999999988864    356665 667653221 1222 478999997  6799999999654433  222 


Q ss_pred             HHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i  275 (300)
                        ..++.|. +++.- -.-.+-+.++|.++.++.++
T Consensus        84 --~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           84 --QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             --HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             --HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence              3334443 66663 22234455777777765544

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.15  E-value=0.0017  Score=55.17  Aligned_cols=87  Identities=15%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             CEEEEEe-cChhHHHHHHHHH-hCCCEEEEECCCCC-CC-------CC-------CcccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLD-AFGCSISYNSRTKK-PS-------VS-------YPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~-~~g~~V~~~~~~~~-~~-------~~-------~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      |+|.|.| .|.||+.+++.|. ..|++|.+.+|++. ..       ..       .....+++++++++|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5799999 5999999999999 89999999988755 21       11       1112356678899999999886532


Q ss_pred             hhhhcchHHHHhcCCC-C-cEEEEcCCCcc
Q 022233          233 ETHHMINKQVLSALGK-E-GVVINIGRGPI  260 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~-g-a~lIn~srg~~  260 (300)
                      - .   ...+++.|++ + ..||++|....
T Consensus        86 ~-~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           86 S-D---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             H-H---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             h-h---HHHHHHHHHhcCCCeEEEEeecee
Confidence            1 1   3445555542 2 36788775543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.14  E-value=0.00026  Score=61.33  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=56.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYP-------FYSNVCEL-AANCDILIICCGLTAETHH  236 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+++.|+|+|.+|+.+|+.|...|+ |++.+++++..    .+..       ....++++ +.++|.|++++|....+. 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~-   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI-   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH-
Confidence            5689999999999999999999999 99999875421    1111       11234444 788999999998654433 


Q ss_pred             cchHHHHhcCCCC-cEEEEc
Q 022233          237 MINKQVLSALGKE-GVVINI  255 (300)
Q Consensus       237 li~~~~l~~mk~g-a~lIn~  255 (300)
                       .-......+.++ .+++.+
T Consensus        87 -~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           87 -HCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             -HHHHHHHHHCSSSEEEEEC
T ss_pred             -HHHHHHHHHCCCCeEEEEE
Confidence             334455556666 444444

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.13  E-value=0.002  Score=62.15  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             ccCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          166 KLGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       166 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .+.|++|+|+|+-          .=...+++.|...|.+|.+||+............++++++++||+|++++.-. +-+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHS-AYS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCH-HHH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCH-HHH
Confidence            4689999999974          33688999999999999999997653222333568999999999999998643 333


Q ss_pred             hcchHHHHhcCC-CCcEEEEcCCCcccCHHHH
Q 022233          236 HMINKQVLSALG-KEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       236 ~li~~~~l~~mk-~ga~lIn~srg~~vd~~aL  266 (300)
                      .+=-..+.+.|+ ++.+++|+ |+- .|.+.+
T Consensus       429 ~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 SLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             SCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             hhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            332244556677 47899995 665 454443

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.13  E-value=0.011  Score=53.71  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.|.+|+++|=|  ++.++.+..+..+|++|.+..+..-...              +  .....+++|+++++|+|..-.
T Consensus       146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence            679999999996  9999999999999999988876432111              1  223578999999999999843


Q ss_pred             CC-------Chh-----hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          229 GL-------TAE-----THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 p~-------~~~-----t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      =.       .++     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       226 w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  276 (307)
T 2i6u_A          226 WTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDA  276 (307)
T ss_dssp             SSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHh
Confidence            20       000     12346889999999999999986   56544443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.12  E-value=0.00043  Score=61.11  Aligned_cols=79  Identities=20%  Similarity=0.333  Sum_probs=57.6

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC-------------------CC-----------CCCc--c-
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK-------------------PS-----------VSYP--F-  210 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~-------------------~~-----------~~~~--~-  210 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. +|+++|+..-                   +.           ....  . 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            35889999999999999999999999998 8888887641                   00           0000  0 


Q ss_pred             ---c--CCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          211 ---Y--SNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       211 ---~--~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                         .  .+++++++++|+|+.+++ +.+++.+++....+
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence               1  134567889999999886 56677777665544

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.12  E-value=0.0077  Score=54.62  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=73.7

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CCcccCCHHHHhhcCCEEEEecCCC------h
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SYPFYSNVCELAANCDILIICCGLT------A  232 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~~~~~~l~e~l~~aDvV~l~~p~~------~  232 (300)
                      +.|.+|+++|= +++.++.+..+..+|++|.+..+..-...       ......+++|+++++|+|..-.=..      .
T Consensus       152 l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~  231 (301)
T 2ef0_A          152 LAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAER  231 (301)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------
T ss_pred             cCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccch
Confidence            67999999998 89999999999999999988876432211       1344678999999999998843211      0


Q ss_pred             h------hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          233 E------THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       233 ~------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      .      ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       232 ~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          232 EKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            1      12346889999999999999997   67655554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.10  E-value=0.0014  Score=59.56  Aligned_cols=92  Identities=21%  Similarity=0.291  Sum_probs=60.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CC--cccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------SY--PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~~--~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+|||.|.||..+|..+...|. +|..+|.+.+...               ..  ....+. +.+++||+|+++++..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998886 8999998753210               11  112456 7799999999998532


Q ss_pred             hh-----------hhhcchHHH---HhcCCCCcEEEEcCCCcccCHHH
Q 022233          232 AE-----------THHMINKQV---LSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 ~~-----------t~~li~~~~---l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ..           +..++ .+.   +....|.+++++++  .++|.-.
T Consensus        82 ~~~g~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~vi~~t--NPv~~~t  126 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADIT-RACISQAAPLSPNAVIIMVN--NPLDAMT  126 (309)
T ss_dssp             -------CHHHHHHHHHH-HHHHHHHGGGCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEcC--CchHHHH
Confidence            11           11111 122   23335889999974  4565544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.09  E-value=0.00053  Score=65.75  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=67.2

Q ss_pred             CCCEEEEEecChh--HHHHHHHHHh----CCCEEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEe
Q 022233          168 GGKRVGIVGLGSI--GSLVAKRLDA----FGCSISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       168 ~g~~vgIiG~G~I--G~~~A~~l~~----~g~~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+++|+|||.|.+  |..++..+..    .| +|..||+.+....              ......++++++++||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            3569999999998  5788887764    46 9999998753210              112346889999999999999


Q ss_pred             cCCC-----------hhhhhcch---------------------H---HHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 022233          228 CGLT-----------AETHHMIN---------------------K---QVLSALGKEGVVINIGRGPIIDEQELVRC  269 (300)
Q Consensus       228 ~p~~-----------~~t~~li~---------------------~---~~l~~mk~ga~lIn~srg~~vd~~aL~~a  269 (300)
                      ++..           |...++..                     .   +.+....|.+++||++-.--+-+.++.+.
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~  159 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV  159 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence            9743           22222210                     1   12233468999999987665545555444

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.07  E-value=0.00045  Score=59.79  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=43.2

Q ss_pred             CEEEEEecChhHHHHHHH--HHhCCCEEE-EECCCCCCCC----C--CcccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKR--LDAFGCSIS-YNSRTKKPSV----S--YPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~--l~~~g~~V~-~~~~~~~~~~----~--~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++++|||.|++|+.+++.  ....|+++. ++|.++....    +  .....++++++++.|++++++|...
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~  157 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA  157 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh
Confidence            579999999999999994  445688775 6677665432    1  1234678898877799999999644

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.06  E-value=0.0018  Score=59.53  Aligned_cols=106  Identities=18%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---------CCEEE-EECCCCCCCC-------------CCcccC--CHHHHhh--cCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---------GCSIS-YNSRTKKPSV-------------SYPFYS--NVCELAA--NCD  222 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---------g~~V~-~~~~~~~~~~-------------~~~~~~--~l~e~l~--~aD  222 (300)
                      .+|||||+|.||+.+++.+...         +.+|. +.+++.....             ....+.  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            3899999999999999999864         66765 5666532211             012233  8999886  489


Q ss_pred             EEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 022233          223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK  276 (300)
Q Consensus       223 vV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~  276 (300)
                      +|+.++|....... .-.-....++.|.-+|-..-+.+. +-+.|.++.++.++.
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999996543222 223345667888887777555554 567788877777663

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.06  E-value=0.00041  Score=66.10  Aligned_cols=102  Identities=17%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             CCEEEEEecChhHH-HHHHHHHhC-CCEE-EEECCCCCCC------CCCc-----ccCCHHHHhh--cCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGS-LVAKRLDAF-GCSI-SYNSRTKKPS------VSYP-----FYSNVCELAA--NCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~-~~A~~l~~~-g~~V-~~~~~~~~~~------~~~~-----~~~~l~e~l~--~aDvV~l~~p~~~  232 (300)
                      -.+|||||+|.||+ .+++.+... ++++ .++|++....      .+..     .+.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988865 5676 4778765421      1222     4678999987  7899999999654


Q ss_pred             hhhhcchHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCc
Q 022233          233 ETHHMINKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i  275 (300)
                      ..+.     ....++.|. +++.- .--.+-+.++|.++.++.++
T Consensus       163 h~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  202 (433)
T 1h6d_A          163 HAEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  202 (433)
T ss_dssp             HHHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             HHHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence            4331     223344454 55542 12233455566666655443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.05  E-value=0.00082  Score=62.19  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPS----VSYPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+. .++.++.. +++|. +++++++..    .+...+.+++++++  +.|+|++++|.....+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   80 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYE   80 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            48999999999997 67777765 67774 678765421    13445689999998  6899999999765543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.01  E-value=0.0026  Score=58.35  Aligned_cols=97  Identities=15%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CCc--ccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------SYP--FYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~~~--~~~~l~e~l~~aDvV~l~~  228 (300)
                      ...++|+|||.|.+|.++|..|...|+ +|..+|++.+...               ...  ...+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            356799999999999999999998888 9999998765311               111  12344 7899999999997


Q ss_pred             CCC--h-hhh-hcc--h----HH---HHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          229 GLT--A-ETH-HMI--N----KQ---VLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       229 p~~--~-~t~-~li--~----~~---~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      +..  + .++ .++  |    ++   .+....|++++++++  .++|.-..
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt--NPvd~~t~  132 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT--NPLDAMVW  132 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHH
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC--CCcHHHHH
Confidence            532  1 111 111  1    11   222335889999997  45554443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.98  E-value=0.0015  Score=59.87  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CCccc-CCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------SYPFY-SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~~~~~-~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|||.|.||.++|..+...|+ +|..+|++++...               ..... .+-.+.+++||+|+++.+..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p   84 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVP   84 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcC
Confidence            5799999999999999999998777 9999998765310               11111 12247899999999996532


Q ss_pred             --h-hhh-hcc--h----HH---HHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 --A-ETH-HMI--N----KQ---VLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 --~-~t~-~li--~----~~---~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                        + .++ .++  |    ++   .+....|++++++++  .++|.-..+
T Consensus        85 ~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~  131 (321)
T 3p7m_A           85 RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNM  131 (321)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHH
T ss_pred             CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHH
Confidence              1 111 111  1    11   222335889999994  566665433

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.97  E-value=0.013  Score=53.22  Aligned_cols=90  Identities=11%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCC-CC-CCCcccCCHHHHhhcCCEEEEecCCCh---------
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKK-PS-VSYPFYSNVCELAANCDILIICCGLTA---------  232 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~-~~-~~~~~~~~l~e~l~~aDvV~l~~p~~~---------  232 (300)
                      +.|.+|+++|=|   ++..+.+..+..+|++|.+..+..- +. .......+++|+++++|+|..-.--.+         
T Consensus       145 l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~  224 (304)
T 3r7f_A          145 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQE  224 (304)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCST
T ss_pred             CCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhHH
Confidence            679999999985   6999999999999999988766321 11 111235689999999999988431111         


Q ss_pred             --hhhhcchHHHHhcCCCCcEEEEcC
Q 022233          233 --ETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       233 --~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                        ...--++.+.++.+|++++|.-+.
T Consensus       225 ~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          225 GYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             THHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHhCCCccCHHHHhhcCCCCEEECCC
Confidence              112346889999999999998886

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.97  E-value=0.0016  Score=57.56  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=57.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC------C-------C-----------------CC--cc-
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP------S-------V-----------------SY--PF-  210 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~------~-------~-----------------~~--~~-  210 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. +++++|...-.      .       .                 ..  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999999999999999998 78887653210      0       0                 00  00 


Q ss_pred             -----cCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          211 -----YSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       211 -----~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                           ..+++++++++|+|+.++. +.+++.++++...+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence                 0135567889999999886 66678777766555

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.97  E-value=0.001  Score=63.85  Aligned_cols=64  Identities=20%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CC-C-------cccCCHHHHhhcCCEEEEecCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VS-Y-------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~-~-------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .+++|+|+|.|.||+.+++.|...|.+|.+++|+....      .+ .       ....++.++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            36899999999999999999999999999998864321      11 1       01124557788999999999864

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.96  E-value=0.00052  Score=64.20  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             CEEEEEecC-hhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCcccCCHHHHhhc--CCEEEEecCCChh
Q 022233          170 KRVGIVGLG-SIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSYPFYSNVCELAAN--CDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G-~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~--aDvV~l~~p~~~~  233 (300)
                      .+|||||+| .||+..+..+... ++++. ++|+++...      .+...+.+++|++++  .|+|++++|....
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH
Confidence            489999999 9999999999875 56765 678765432      144567899999975  8999999996544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.95  E-value=0.001  Score=61.12  Aligned_cols=98  Identities=23%  Similarity=0.298  Sum_probs=63.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      -.+++|+|||.|.||.++|..|...|.  ++..+|++.+...              ......+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            346799999999999999999998777  8999998653210              111123445789999999998753


Q ss_pred             Ch---hhh-hcc--h----HH---HHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          231 TA---ETH-HMI--N----KQ---VLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       231 ~~---~t~-~li--~----~~---~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      ..   .++ .++  |    ++   .+....|.+++++++  .++|.-+.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~t~  133 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILTY  133 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHHHH
Confidence            21   122 122  1    11   233446889999996  56665443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.95  E-value=0.0013  Score=60.49  Aligned_cols=65  Identities=12%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             CEEEEEecChhHH-HHHHHHHhC-CCEEE-EECCCCCCC-------CCCcccCCHHHHhhc--CCEEEEecCCChhh
Q 022233          170 KRVGIVGLGSIGS-LVAKRLDAF-GCSIS-YNSRTKKPS-------VSYPFYSNVCELAAN--CDILIICCGLTAET  234 (300)
Q Consensus       170 ~~vgIiG~G~IG~-~~A~~l~~~-g~~V~-~~~~~~~~~-------~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t  234 (300)
                      .+|||||+|.||+ ..+..++.. +++|. +++++....       .+...+.++++++++  .|+|++++|.....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   79 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY   79 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence            3899999999999 567767665 67775 778772111       133456899999986  89999999975543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.95  E-value=0.0032  Score=52.29  Aligned_cols=63  Identities=19%  Similarity=0.183  Sum_probs=48.2

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|++....     ..       ....++.++++++|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999998 99999999999999999999888754321     11       11234667888999999887644

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.93  E-value=0.0012  Score=60.52  Aligned_cols=63  Identities=16%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CCEEEEEecChhHH-HHHHHHHhC-CCEEE-EECCCCCCCCCCcccCCHHHHhhc---CCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGS-LVAKRLDAF-GCSIS-YNSRTKKPSVSYPFYSNVCELAAN---CDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~-~~A~~l~~~-g~~V~-~~~~~~~~~~~~~~~~~l~e~l~~---aDvV~l~~p~~~  232 (300)
                      -.+|||||+|.||+ ..++.++.. +++|. +++++.+. .+...+.++++++++   .|+|++++|...
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~   93 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPPQY   93 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCHHH
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCcHH
Confidence            45999999999999 788888876 67764 67776543 355567899999876   899999998443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.93  E-value=0.0018  Score=62.09  Aligned_cols=97  Identities=22%  Similarity=0.308  Sum_probs=70.6

Q ss_pred             cccCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecC
Q 022233          165 SKLGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       165 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ..+.|++|+|+|+.          .-...+++.|...|.+|.+||+...+.     .+.....++++++++||+|++++.
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  397 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE  397 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence            35789999999997          678899999999999999999875321     133445688999999999999987


Q ss_pred             CChhhhhcchH-HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          230 LTAETHHMINK-QVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       230 ~~~~t~~li~~-~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      -.+- +. ++- .+.+.|+. .+++|+ |+- .|.+.+
T Consensus       398 ~~~f-~~-~d~~~~~~~~~~-~~i~D~-r~~-~~~~~~  430 (446)
T 4a7p_A          398 WDAF-RA-LDLTRIKNSLKS-PVLVDL-RNI-YPPAEL  430 (446)
T ss_dssp             CTTT-TS-CCHHHHHTTBSS-CBEECS-SCC-SCHHHH
T ss_pred             CHHh-hc-CCHHHHHHhcCC-CEEEEC-CCC-CCHHHH
Confidence            5432 22 343 44555764 678886 654 555544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.92  E-value=0.0013  Score=58.28  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=47.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-C-------CcccCCHHHHhhc-CCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-S-------YPFYSNVCELAAN-CDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~-------~~~~~~l~e~l~~-aDvV~l~~p  229 (300)
                      .+++|.|.|.|.||+.+++.|...|++|.+.+|+..... +       .....++.++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            367999999999999999999999999999988765321 1       1122345566776 999987764

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.91  E-value=0.0018  Score=58.53  Aligned_cols=103  Identities=20%  Similarity=0.279  Sum_probs=67.7

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEE-EEECCCCC--CCCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSI-SYNSRTKK--PSVSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V-~~~~~~~~--~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .+++|+|. |++|+.+++.+...|+++ ...++...  ...+...+.+++|+.+  ..|++++++|.. .+...+. +..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v~-ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAVF-EAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHH-HHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHHH-HHH
Confidence            45788899 999999999999999973 34454321  1135556789999998  899999999843 3333332 233


Q ss_pred             hcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCce
Q 022233          244 SALGKEGVVINIGRG-PIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg-~~vd~~aL~~aL~~~~i~  276 (300)
                      +. .... +|..+.| +..+++.|.++.++..+.
T Consensus        92 ~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 DA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            32 2222 4444444 234567888888877664

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.91  E-value=0.0026  Score=61.45  Aligned_cols=110  Identities=13%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             CCEEEEEecChhH--HHHHHHHHh---C-CCEEEEECCCCCCC---------------CC--CcccCCHHHHhhcCCEEE
Q 022233          169 GKRVGIVGLGSIG--SLVAKRLDA---F-GCSISYNSRTKKPS---------------VS--YPFYSNVCELAANCDILI  225 (300)
Q Consensus       169 g~~vgIiG~G~IG--~~~A~~l~~---~-g~~V~~~~~~~~~~---------------~~--~~~~~~l~e~l~~aDvV~  225 (300)
                      .++|+|||.|.||  .++|..|..   + |.+|..||++.+..               ..  .....++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            4699999999974  655666643   3 78999999876421               01  122357888999999999


Q ss_pred             EecCCCh---------------------hh----------------hhcch--HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          226 ICCGLTA---------------------ET----------------HHMIN--KQVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       226 l~~p~~~---------------------~t----------------~~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      +++|...                     +|                ..++.  .+......|++++||++-.--+-+.++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997421                     11                00110  122334468999999987665555666


Q ss_pred             HHHHHhCCceEEE
Q 022233          267 VRCLVQGEIKGAG  279 (300)
Q Consensus       267 ~~aL~~~~i~~a~  279 (300)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            55 5555665553

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.89  E-value=0.0015  Score=60.91  Aligned_cols=61  Identities=20%  Similarity=0.398  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhcCCEEEE
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+....          .......+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            46799999999999999999999999999999887654321          00111236677888998865

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.89  E-value=0.0018  Score=59.47  Aligned_cols=97  Identities=24%  Similarity=0.321  Sum_probs=63.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|||.|.||.++|..|+..|.  +|..+|++.+...               ......+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5699999999999999999998887  8999998653211               1111123346899999999997532


Q ss_pred             --h-hhh-hcc--h----H---HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 --A-ETH-HMI--N----K---QVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 --~-~t~-~li--~----~---~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                        + .++ .++  |    +   +.+....|.+++++++  .++|.-+.+
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd~~t~~  131 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVDILTYA  131 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHHHHHHH
Confidence              1 111 111  1    1   1233346889999997  456654433

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.88  E-value=0.0004  Score=63.95  Aligned_cols=97  Identities=10%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC----------C------CcccCCHHHHhhcCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV----------S------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~----------~------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ..++|+|||.|.||..+|..++..|+  +|..+|.+.+...          .      .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999998887  8999998653211          0      011235555 999999999864


Q ss_pred             CCh---hhh-hcc--h----H---HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          230 LTA---ETH-HMI--N----K---QVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       230 ~~~---~t~-~li--~----~---~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ...   .++ .++  |    +   +.+....|++++++++  .++|.-..+
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt--NPvdi~t~~  147 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP--ELGTDKNKQ  147 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC--CccHHHHHH
Confidence            321   111 112  1    1   1233347899999997  456654443

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.87  E-value=0.0027  Score=57.72  Aligned_cols=64  Identities=17%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCCCCC------CCcccCCHHHHh----------hcCCEEEEecCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKKPSV------SYPFYSNVCELA----------ANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~~~~------~~~~~~~l~e~l----------~~aDvV~l~~p~~  231 (300)
                      .+|||||+ |.||+..++.++..+.++. ++|+++....      ....+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 7899999999998888764 6787765321      234567888887          5689999999965


Q ss_pred             hh
Q 022233          232 AE  233 (300)
Q Consensus       232 ~~  233 (300)
                      ..
T Consensus        84 ~H   85 (312)
T 3o9z_A           84 LH   85 (312)
T ss_dssp             GH
T ss_pred             hh
Confidence            44

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.83  E-value=0.0013  Score=63.48  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             CCEEEEEec----ChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCC---cccCCHHHHhh--cCCEEEEecCC
Q 022233          169 GKRVGIVGL----GSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSY---PFYSNVCELAA--NCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~----G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~---~~~~~l~e~l~--~aDvV~l~~p~  230 (300)
                      -.+|||||+    |.||+..++.++..  +++|. ++|+++...      .+.   ..+.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            458999999    99999999999886  67764 778775421      133   25789999996  68999999995


Q ss_pred             ChhhhhcchHHHHhcCCCC-------cEEEEc-CCCcccCHHHHHHHHHhCC
Q 022233          231 TAETHHMINKQVLSALGKE-------GVVINI-GRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~g-------a~lIn~-srg~~vd~~aL~~aL~~~~  274 (300)
                      ....+  +   ....++.|       .+++.- .--.+-+.++|+++.++.+
T Consensus       119 ~~H~~--~---~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          119 PEHYE--V---VKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             HHHHH--H---HHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             HHHHH--H---HHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            54333  2   12223334       466664 2223445566666666554

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.82  E-value=0.0029  Score=57.27  Aligned_cols=104  Identities=23%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEE-EEECCCC--CCCCCCcccCCHHHHhh--c-CCEEEEecCCChhhhhcchHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSI-SYNSRTK--KPSVSYPFYSNVCELAA--N-CDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V-~~~~~~~--~~~~~~~~~~~l~e~l~--~-aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ..++.|+|. |++|+.+++.+...|+++ ...++..  ....+...+.+++|+.+  . .|++++++|.. .+...+. +
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v~-e   90 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAVY-E   90 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHHH-H
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHHH-H
Confidence            335777798 999999999999889983 3455442  11235566789999987  5 99999999854 3333332 2


Q ss_pred             HHhcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCce
Q 022233          242 VLSALGKEGVVINIGRG-PIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg-~~vd~~aL~~aL~~~~i~  276 (300)
                      ..+ ..... +|..+.| +..+++.|.++.++..+.
T Consensus        91 a~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           91 AVD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            222 22222 3444444 223567888888877664

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.81  E-value=0.0014  Score=59.83  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|||.|.+|.++|..|...|.  +|..+|.+.+...               ......+..+.+++||+|+++.+..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~   85 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence            4699999999999999999987774  8999997642110               1111124467899999999998653


Q ss_pred             hh---hh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          232 AE---TH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 ~~---t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ..   ++        .++.  .+.+....|++++|+++  .++|.-.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t  130 (317)
T 3d0o_A           86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILA  130 (317)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHH
Confidence            21   11        1110  11223347899999975  5565543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.81  E-value=0.0029  Score=57.58  Aligned_cols=65  Identities=14%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCCCCC------CCcccCCHHHHh-----------hcCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKKPSV------SYPFYSNVCELA-----------ANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~~~~------~~~~~~~l~e~l-----------~~aDvV~l~~p~  230 (300)
                      .++||||+ |.||+..++.++..+.++. ++|+++....      ....+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 7999999999998898764 6787655321      234467888887           568999999996


Q ss_pred             Chhh
Q 022233          231 TAET  234 (300)
Q Consensus       231 ~~~t  234 (300)
                      ....
T Consensus        84 ~~H~   87 (318)
T 3oa2_A           84 YLHY   87 (318)
T ss_dssp             GGHH
T ss_pred             HHHH
Confidence            5443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.0042  Score=52.73  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC----C-------CcccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S-------YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~-------~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|+.....    .       .....++.++++++|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 599999999999999999999998765321    1       112235667889999999887654

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.80  E-value=0.0095  Score=54.77  Aligned_cols=91  Identities=10%  Similarity=0.044  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|.+|+++|=|  ++..+++..+..+|++|.+..+..-...              +  .....+++++++++|||..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            4779999999996  9999999999999999988876432111              1  22357899999999999884


Q ss_pred             cCC--------Chh-----hhhcchHHHHhcC-CCCcEEEEcC
Q 022233          228 CGL--------TAE-----THHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       228 ~p~--------~~~-----t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      .=.        ..+     ...-++.+.++.+ |++++|.-+.
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            431        111     1235689999999 9999999885

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.79  E-value=0.0016  Score=61.09  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=50.2

Q ss_pred             CCEEEEEecCh---hHHHHHHHHHhCC-CEEE--EECCCCCCC------CCC---cccCCHHHHhhc-------CCEEEE
Q 022233          169 GKRVGIVGLGS---IGSLVAKRLDAFG-CSIS--YNSRTKKPS------VSY---PFYSNVCELAAN-------CDILII  226 (300)
Q Consensus       169 g~~vgIiG~G~---IG~~~A~~l~~~g-~~V~--~~~~~~~~~------~~~---~~~~~l~e~l~~-------aDvV~l  226 (300)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|++++..      .+.   ..+.++++++++       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999998887665 6765  468765431      233   457899999975       899999


Q ss_pred             ecCCChhh
Q 022233          227 CCGLTAET  234 (300)
Q Consensus       227 ~~p~~~~t  234 (300)
                      ++|.....
T Consensus        92 ~tp~~~H~   99 (398)
T 3dty_A           92 ATPNGTHY   99 (398)
T ss_dssp             ESCGGGHH
T ss_pred             CCCcHHHH
Confidence            99976543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.78  E-value=0.0011  Score=63.12  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CCEEEEEec----ChhHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCc---ccCCHHHHhh--cCCEEEEecCC
Q 022233          169 GKRVGIVGL----GSIGSLVAKRLDAF--GCSI-SYNSRTKKPS------VSYP---FYSNVCELAA--NCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~----G~IG~~~A~~l~~~--g~~V-~~~~~~~~~~------~~~~---~~~~l~e~l~--~aDvV~l~~p~  230 (300)
                      -.+|||||+    |.||+..++.++..  +++| .+++++....      .+..   .+.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999987  6776 4778765421      1222   5679999997  58999999985


Q ss_pred             Chh
Q 022233          231 TAE  233 (300)
Q Consensus       231 ~~~  233 (300)
                      ...
T Consensus       100 ~~H  102 (438)
T 3btv_A          100 ASH  102 (438)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.78  E-value=0.0064  Score=56.18  Aligned_cols=83  Identities=12%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCC-EEEEECCCCCCCC----------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGC-SISYNSRTKKPSV----------S--YPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~----------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ++|||+| .|.||+.+.+.|..... ++....+......          +  .....++++ +.++|+|++|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            5899999 89999999999987654 7665543322111          0  001223444 578999999999765433


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCC
Q 022233          236 HMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg  258 (300)
                        +-..+   ++.|..+|+.|--
T Consensus        84 --~a~~~---~~aG~~VId~Sa~  101 (345)
T 2ozp_A           84 --EFDRY---SALAPVLVDLSAD  101 (345)
T ss_dssp             --THHHH---HTTCSEEEECSST
T ss_pred             --HHHHH---HHCCCEEEEcCcc
Confidence              22222   4678899999753

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.77  E-value=0.0035  Score=56.10  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhC-CCEEEE-ECCCCCCC------------CCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAF-GCSISY-NSRTKKPS------------VSYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~-g~~V~~-~~~~~~~~------------~~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      -.+|+|+| +|+||+.+++.+... ++++.+ ++++..+.            .+.....++++++.++|+|+-+.+.. .
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~-a   85 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE-G   85 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH-H
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH-H
Confidence            35899999 999999999988754 677764 67764321            12334578999999999999887522 2


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      +...    ....++.|.-+|-...|
T Consensus        86 ~~~~----~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           86 TLVH----LDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             HHHH----HHHHHHHTCEEEECCCC
T ss_pred             HHHH----HHHHHHcCCCEEEECCC
Confidence            2211    22224455555655556

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.77  E-value=0.0017  Score=59.53  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             CCEEEEEecC-hhHHHHHHHHHhC--CCEE-EEECCCCCCCC------CC-cccCCHHHHhh--cCCEEEEecCCChh
Q 022233          169 GKRVGIVGLG-SIGSLVAKRLDAF--GCSI-SYNSRTKKPSV------SY-PFYSNVCELAA--NCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G-~IG~~~A~~l~~~--g~~V-~~~~~~~~~~~------~~-~~~~~l~e~l~--~aDvV~l~~p~~~~  233 (300)
                      -.+|||||+| .+|+..++.++..  ++++ .++|++++...      +. ..+.+++++++  +.|+|++++|....
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            3489999999 8999999999876  4676 57788754321      22 45689999997  58999999986543

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.76  E-value=0.022  Score=51.88  Aligned_cols=98  Identities=11%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +.|.+|+++|= +++.++++..+..+|++|.+..+..-...              +  .....+++|+++++|+|..-.=
T Consensus       153 l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w  232 (315)
T 1pvv_A          153 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW  232 (315)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcce
Confidence            67999999998 89999999999999999988876432111              1  2235789999999999988442


Q ss_pred             C-------Chh-----hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          230 L-------TAE-----THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       230 ~-------~~~-----t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      .       .++     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       233 ~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~e  282 (315)
T 1pvv_A          233 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  282 (315)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHH
Confidence            1       111     12356889999999999999986   56555543

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.74  E-value=0.022  Score=52.16  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.|.+|+++|=|  ++..+.+..+..+|++|.+..+..-...              +  .....+++|+++++|+|..-.
T Consensus       165 l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~  244 (325)
T 1vlv_A          165 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV  244 (325)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence            679999999996  9999999999999999998876432111              1  223578999999999998843


Q ss_pred             CC-------Chh-----hhhcchHHHHhcC-CCCcEEEEcC---CCcccCHH
Q 022233          229 GL-------TAE-----THHMINKQVLSAL-GKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 p~-------~~~-----t~~li~~~~l~~m-k~ga~lIn~s---rg~~vd~~  264 (300)
                      =.       .++     ...-++.+.++.+ |++++|.-+.   ||.=|+.+
T Consensus       245 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~e  296 (325)
T 1vlv_A          245 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  296 (325)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             ccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHH
Confidence            21       011     1234688999999 9999999986   56545443

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.73  E-value=0.0033  Score=53.24  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcc-cCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPF-YSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~-~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      |+|.|.| .|.||+.+++.|...|++|.+.+|+.....          .... ..++.++++++|+|+.+.....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~   75 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG   75 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence            4799999 899999999999999999999988765321          1112 2345667889999999887543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.72  E-value=0.0016  Score=59.62  Aligned_cols=95  Identities=18%  Similarity=0.285  Sum_probs=61.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      .++|+|||.|.+|.+++..+...+.  +|..+|...+...              ......+..+.+++||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999987676  8999998643211              11111245678999999999986532


Q ss_pred             h---hh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          233 E---TH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       233 ~---t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      .   ++        .++.  .+.+....|.+++|++  ..++|.-.
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t  128 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDILT  128 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHHHH
Confidence            1   11        1110  1122334789999998  45566543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.72  E-value=0.0043  Score=53.18  Aligned_cols=65  Identities=22%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCC--EEEEECCCCCCCC-----C-------CcccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-----S-------YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-----~-------~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +.+|++.|.| .|.||+.+++.|...|+  +|.+.+|++....     .       .....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999 69999999999999999  9999888764321     1       111245667788999999988654

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.72  E-value=0.021  Score=51.93  Aligned_cols=98  Identities=12%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC-CCC---------CCcccCCHHHHhhcCCEEEEec----CC-
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK-PSV---------SYPFYSNVCELAANCDILIICC----GL-  230 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~-~~~---------~~~~~~~l~e~l~~aDvV~l~~----p~-  230 (300)
                      +.|.+|++||= +++.++.+..+..+|++|.+..+..- +..         ......+++|+++++|+|..-.    .. 
T Consensus       152 l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e  231 (309)
T 4f2g_A          152 IRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFE  231 (309)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcch
Confidence            67999999996 57888888889999999988766321 111         1123578999999999998743    11 


Q ss_pred             --Chh-----hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          231 --TAE-----THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       231 --~~~-----t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                        .++     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       232 ~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  275 (309)
T 4f2g_A          232 AENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAG  275 (309)
T ss_dssp             ------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHH
T ss_pred             hhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHH
Confidence              000     12346899999999999999886   66655543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.70  E-value=0.0021  Score=61.25  Aligned_cols=65  Identities=9%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC-CCEE-EEECCCCCCC---------CC---CcccC----CHHHHhh--cCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF-GCSI-SYNSRTKKPS---------VS---YPFYS----NVCELAA--NCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~-g~~V-~~~~~~~~~~---------~~---~~~~~----~l~e~l~--~aDvV~l~~  228 (300)
                      -.+|||||+|.||+..++.+... |++| .++|++++..         .+   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999998875 6776 4778775421         11   23455    8999997  589999999


Q ss_pred             CCChh
Q 022233          229 GLTAE  233 (300)
Q Consensus       229 p~~~~  233 (300)
                      |....
T Consensus       100 p~~~h  104 (444)
T 2ixa_A          100 PWEWH  104 (444)
T ss_dssp             CGGGH
T ss_pred             CcHHH
Confidence            96544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.70  E-value=0.0022  Score=59.48  Aligned_cols=65  Identities=11%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             CCEEEEEecChhHH-HHHHHHHhCCCEEE-EECCCCCCC------CC-CcccCCHHHHhhc--CCEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGS-LVAKRLDAFGCSIS-YNSRTKKPS------VS-YPFYSNVCELAAN--CDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~-~~A~~l~~~g~~V~-~~~~~~~~~------~~-~~~~~~l~e~l~~--aDvV~l~~p~~~~  233 (300)
                      -.+|||||+|.+|. .++..+..-++++. ++|++++..      .+ ...+.++++++++  .|+|++++|....
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER  101 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH
Confidence            45999999999995 57777777788865 678875432      12 3457899999976  8999999986543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.69  E-value=0.0024  Score=58.97  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--------CCEEE-EECCCCCCCC------CC-cccCCHHHHhhc--CCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--------GCSIS-YNSRTKKPSV------SY-PFYSNVCELAAN--CDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--------g~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~~--aDvV~l~~p~~  231 (300)
                      -+|||||+|.||+.-++.++..        +++|. ++|++++...      +. ..+.++++++++  .|+|++++|..
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~  105 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQ  105 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGG
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChH
Confidence            4899999999999877766542        56764 6788765432      33 356899999964  69999999966


Q ss_pred             hh
Q 022233          232 AE  233 (300)
Q Consensus       232 ~~  233 (300)
                      -.
T Consensus       106 ~H  107 (393)
T 4fb5_A          106 FH  107 (393)
T ss_dssp             GH
T ss_pred             HH
Confidence            54

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.68  E-value=0.0021  Score=61.90  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             CCEEEEEecChh-HHHHHHHHHhC-----CCEEEEECCCCCCCC---------------C--CcccCCHHHHhhcCCEEE
Q 022233          169 GKRVGIVGLGSI-GSLVAKRLDAF-----GCSISYNSRTKKPSV---------------S--YPFYSNVCELAANCDILI  225 (300)
Q Consensus       169 g~~vgIiG~G~I-G~~~A~~l~~~-----g~~V~~~~~~~~~~~---------------~--~~~~~~l~e~l~~aDvV~  225 (300)
                      .++|+|||.|.. |.++|..|...     +.+|..||+..+...               .  .....++++++++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 66677666655     558999998764210               1  112357889999999999


Q ss_pred             EecCCChh---hh----------------------------hcch--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          226 ICCGLTAE---TH----------------------------HMIN--KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       226 l~~p~~~~---t~----------------------------~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      +++|....   ++                            .++.  .+......|++++||++-.--+-+.++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            0110  112333468999999976654444555444433


Q ss_pred             CCceEE
Q 022233          273 GEIKGA  278 (300)
Q Consensus       273 ~~i~~a  278 (300)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            355544

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.65  E-value=0.008  Score=55.83  Aligned_cols=84  Identities=12%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCC-CEEEEECCCCCCCC----------CC---c-ccCCHHHHhhcCCEEEEecCCC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFG-CSISYNSRTKKPSV----------SY---P-FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~----------~~---~-~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ...+|+|+| +|.||+.+++.|.... +++...........          +.   . ...+ ++.+.++|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346999999 9999999999998765 47766543322111          00   0 0112 45567899999999854


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ..      .+.....+.|+.+||.|.-
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa~  114 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSAD  114 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSST
T ss_pred             hH------HHHHHHHhCCCEEEECCcc
Confidence            43      2222222779999999753

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.65  E-value=0.0067  Score=57.79  Aligned_cols=87  Identities=10%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             cCCCEEEEEecC----------hhHHHHHHHHHhC-CCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          167 LGGKRVGIVGLG----------SIGSLVAKRLDAF-GCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G----------~IG~~~A~~l~~~-g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      +.|++|+|+|+.          .-...+++.|... |.+|.+||+.....   ....++++++++||+|++++.-.+ -+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~~-f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHSE-FK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCGG-GT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCHH-Hh
Confidence            589999999984          3468899999999 99999999976543   234678999999999999986443 23


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      . ++-+.++.|+ +.+++|+ |+-+
T Consensus       389 ~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 N-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             S-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             c-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            2 3333346676 6789996 6554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.63  E-value=0.0062  Score=54.90  Aligned_cols=84  Identities=13%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             CEEEEEe-cChhHHHHHHHHHh-CCCEEE-EECCCCCC-------------CCCCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDA-FGCSIS-YNSRTKKP-------------SVSYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~-------------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      .+|+|+| +|+||+.+++.+.. -++++. +++++...             ..+...+.++++++.++|+|+-..+  ++
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            4899999 99999999999874 477865 56775432             1133456799999999999997764  22


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ..   .......++.|.-+|-...|
T Consensus       100 a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          100 AS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HH---HHHHHHHHHHTCEEEECCCC
T ss_pred             HH---HHHHHHHHHcCCCEEEECCC
Confidence            11   12222334556666665566

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.0046  Score=58.38  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             CCEEEEEecCh---hHHHHHHHHHhCC-CEEE--EECCCCCCC------CCC---cccCCHHHHhhc-------CCEEEE
Q 022233          169 GKRVGIVGLGS---IGSLVAKRLDAFG-CSIS--YNSRTKKPS------VSY---PFYSNVCELAAN-------CDILII  226 (300)
Q Consensus       169 g~~vgIiG~G~---IG~~~A~~l~~~g-~~V~--~~~~~~~~~------~~~---~~~~~l~e~l~~-------aDvV~l  226 (300)
                      -.+|||||+|.   ||+..+..++..+ +++.  +++++++..      .+.   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999988888765 5765  568765432      133   456899999976       899999


Q ss_pred             ecCCChh
Q 022233          227 CCGLTAE  233 (300)
Q Consensus       227 ~~p~~~~  233 (300)
                      ++|....
T Consensus       117 ~tp~~~H  123 (417)
T 3v5n_A          117 VTPNHVH  123 (417)
T ss_dssp             CSCTTSH
T ss_pred             CCCcHHH
Confidence            9997654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.63  E-value=0.002  Score=59.19  Aligned_cols=96  Identities=21%  Similarity=0.277  Sum_probs=62.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      .++|+|||.|.+|.+++..+...+.  +|..+|...+...              ......+..+.+++||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4799999999999999999987675  7999998643210              11111245678999999999986532


Q ss_pred             h---hh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          233 E---TH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       233 ~---t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      .   ++        .++.  .+.+....|.+++|++  ..++|.-..
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~  133 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILTY  133 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHHH
Confidence            1   11        1110  0112223689999998  555665443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.63  E-value=0.0046  Score=51.97  Aligned_cols=89  Identities=13%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcc-cCCH----HHHhhcCCEEEEecCCChhhhh---
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPF-YSNV----CELAANCDILIICCGLTAETHH---  236 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~-~~~l----~e~l~~aDvV~l~~p~~~~t~~---  236 (300)
                      |+|.|.| .|.||+.+++.|...|++|.+.+|++...    .+... ..++    .+.+..+|+|+.+.........   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            5799999 59999999999999999999998875321    11110 0111    1678999999998865432211   


Q ss_pred             cchHHHHhcCCC--CcEEEEcCCC
Q 022233          237 MINKQVLSALGK--EGVVINIGRG  258 (300)
Q Consensus       237 li~~~~l~~mk~--ga~lIn~srg  258 (300)
                      .....+++.|++  ...+|.+|..
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCceEEEEecc
Confidence            112445555554  3567777654

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.62  E-value=0.01  Score=54.60  Aligned_cols=91  Identities=10%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|.+|+++|=|  ++..+++..+..+|++|.+..+..-...              +  .....+++++++++|||..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            3778999999986  9999999999999999988876432111              2  22357899999999999884


Q ss_pred             cCCC--------hh-----hhhcchHHHHhcC-CCCcEEEEcC
Q 022233          228 CGLT--------AE-----THHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       228 ~p~~--------~~-----t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      .=..        .+     ...-++.+.++.+ |++++|.-+.
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            4310        11     1235689999999 9999999885

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.58  E-value=0.0065  Score=56.32  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCC------CEEEEEC-CCCC-CCC--------C---Cccc-CCHHHHhhcCCEEEEe
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFG------CSISYNS-RTKK-PSV--------S---YPFY-SNVCELAANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g------~~V~~~~-~~~~-~~~--------~---~~~~-~~l~e~l~~aDvV~l~  227 (300)
                      .++|+|+| .|.+|+.+.+.|...+      .++.... ++.. ...        +   .... .+. +.+.++|+|++|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~a   87 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLA   87 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEEC
Confidence            36999999 9999999999999776      3666553 2211 100        0   0111 122 446689999999


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      +|...      ..+..+.++.|..+||.|.---.+..+.++
T Consensus        88 lg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~  122 (352)
T 2nqt_A           88 LPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWE  122 (352)
T ss_dssp             CTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred             CCCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence            98653      333444446789999998665544445443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.58  E-value=0.0048  Score=56.36  Aligned_cols=98  Identities=15%  Similarity=0.278  Sum_probs=64.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC--CCCC---------------CCccc-CCHHHHhhcCCEEEEec
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK--KPSV---------------SYPFY-SNVCELAANCDILIICC  228 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~--~~~~---------------~~~~~-~~l~e~l~~aDvV~l~~  228 (300)
                      ..++|+|||.|.||..+|..+...|. +|..+|+++  ....               ..... .+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999999899 999999973  2110               00111 12246799999999997


Q ss_pred             CCC--h-hhh-hcc--h----HH---HHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          229 GLT--A-ETH-HMI--N----KQ---VLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       229 p~~--~-~t~-~li--~----~~---~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ...  + .++ .++  |    ++   .+....|++++++++  .++|.-..+
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t~~  136 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMTYS  136 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHHHH
Confidence            432  1 111 122  1    12   223336889999998  456655544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.57  E-value=0.0074  Score=54.33  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC--CCCCcccCCHHHHhhcCCEEEEecCCCh----------hh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP--SVSYPFYSNVCELAANCDILIICCGLTA----------ET  234 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~--~~~~~~~~~l~e~l~~aDvV~l~~p~~~----------~t  234 (300)
                      ++|++|.|+|........++.|...|++|.+.......  ..+.....++.+.++++|+|++..|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67899999999999999999999999999876432221  1222334557788899999987544321          12


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ...++++.++.++++.+++ +   + +|..++.+++.+.+|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence            2336788999999988877 3   3 3777766777777664

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.57  E-value=0.0013  Score=62.19  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC---CEEEEECCCCCCCC------------CC-------cccCCHHHHhhc--CCEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG---CSISYNSRTKKPSV------------SY-------PFYSNVCELAAN--CDILI  225 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g---~~V~~~~~~~~~~~------------~~-------~~~~~l~e~l~~--aDvV~  225 (300)
                      ++|+|+|.|.||+.+++.|...|   .+|.+.+|+.....            ..       ....++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   38999888754210            01       112356777877  89999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      .++|.... .. +.+   ..++.|.-++|++-
T Consensus        82 n~ag~~~~-~~-v~~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPYQD-LT-IME---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGGGH-HH-HHH---HHHHHTCCEEESSC
T ss_pred             ECCCcccC-hH-HHH---HHHHhCCCEEEecC
Confidence            99874322 11 212   22345666777644

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.53  E-value=0.0013  Score=59.00  Aligned_cols=41  Identities=27%  Similarity=0.430  Sum_probs=36.8

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |+  ..++.|++|.|||.|.+|.+.++.|...|++|+++++..
T Consensus         6 pl--~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QL--AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EE--EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eE--EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            55  668999999999999999999999999999999887643

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.51  E-value=0.0016  Score=56.20  Aligned_cols=64  Identities=14%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             CCEEEEEecChhHHHHHHH--HHhCCCEEE-EECCCCCCCC----CC--cccCCHHHHhh-cCCEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGSLVAKR--LDAFGCSIS-YNSRTKKPSV----SY--PFYSNVCELAA-NCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~--l~~~g~~V~-~~~~~~~~~~----~~--~~~~~l~e~l~-~aDvV~l~~p~~~~  233 (300)
                      .++++|||.|.+|+.+++.  ... |+++. ++|.++....    +.  ....+++++++ +.|+|++++|....
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~  153 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAA  153 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhH
Confidence            3589999999999999995  334 78765 5676654321    21  12567888876 58999999996543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.50  E-value=0.003  Score=58.45  Aligned_cols=85  Identities=25%  Similarity=0.345  Sum_probs=61.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcc---cCC---HHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPF---YSN---VCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~---~~~---l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.+|.|+|.|.||..+++.++.+|++|++.+++++.      ..++..   ..+   +.++....|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            5889999999999999999999999999988876542      223221   112   33334568999999875432  


Q ss_pred             hcchHHHHhcCCCCcEEEEcCC
Q 022233          236 HMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~sr  257 (300)
                         ....++.|+++..+|+++.
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCC
T ss_pred             ---HHHHHHHHhcCCEEEEEcc
Confidence               2356677888889998874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.50  E-value=0.0023  Score=58.59  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CC-cccCCHHHHhhc--CCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPSV------SY-PFYSNVCELAAN--CDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~~--aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.||+. .+..++.. +++|. ++|++++...      +. ..+.+++|++++  .|+|++++|....
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence            38999999999986 56777765 67775 6788754321      33 346899999965  7999999996544

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.50  E-value=0.0071  Score=55.89  Aligned_cols=100  Identities=22%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +.+++|+|||. |.+|+.+|..+...|.  +|..+|...+...              ......+..+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            55789999998 9999999999888884  7999998643210              11223577889999999999863


Q ss_pred             CC--h-hhh-hcc--h----HH---HHhcCCCCcE-EEEcCCCcccCHHHHHH
Q 022233          230 LT--A-ETH-HMI--N----KQ---VLSALGKEGV-VINIGRGPIIDEQELVR  268 (300)
Q Consensus       230 ~~--~-~t~-~li--~----~~---~l~~mk~ga~-lIn~srg~~vd~~aL~~  268 (300)
                      ..  + .++ .++  |    ++   .+....|.++ +++++  .++|.-..+.
T Consensus        86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~  136 (343)
T 3fi9_A           86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT  136 (343)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence            21  1 111 111  1    11   1222347774 88885  6677666554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.49  E-value=0.0029  Score=54.33  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-c-----ccCCHHHHhhcCCEEEEecCCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-P-----FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-~-----~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ..+.||+|.|.|. |.||+.+++.|...|++|.+.+|+.....     +. .     ...++.+++..+|+|+.+....
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            4689999999998 99999999999999999999988754310     11 1     1156678889999999887654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.49  E-value=0.0047  Score=52.19  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-cCCH----HHHhhcCCEEEEecCCC-----hh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-YSNV----CELAANCDILIICCGLT-----AE  233 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-~~~l----~e~l~~aDvV~l~~p~~-----~~  233 (300)
                      |+|.|.|. |.||+.+++.|...|++|.+.+|+....     .+... ..++    .+.+..+|+|+.+....     ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47999997 9999999999999999999998875321     11110 0111    16788999999887553     11


Q ss_pred             hhhcchHHHHhcCC-CCcEEEEcCCC
Q 022233          234 THHMINKQVLSALG-KEGVVINIGRG  258 (300)
Q Consensus       234 t~~li~~~~l~~mk-~ga~lIn~srg  258 (300)
                      +.-.....+++.|+ .|..+|.+|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            11112345566664 34678888654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.47  E-value=0.0094  Score=55.92  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh---c
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS---A  245 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~---~  245 (300)
                      -.++.|+|.|.+|+++++.++.+|++|+++|.++.-..        .+-+..+|-++...|   .  ..+..  +.   .
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~--------~~~fp~a~~~~~~~p---~--~~~~~--~~~~~~  268 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT--------TARFPTADEVVVDWP---H--RYLAA--QAEAGA  268 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC--------TTTCSSSSEEEESCH---H--HHHHH--HHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc--------cccCCCceEEEeCCh---H--HHHHh--hccccC
Confidence            45999999999999999999999999999887654211        122345554544433   1  11111  11   1


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEE
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAG  279 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~  279 (300)
                      +.+++.+|=+.++.-.|...|..+|+.+.....|
T Consensus       269 ~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          269 IDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             CCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             CCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            5677777888888888888888888776333333

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.44  E-value=0.03  Score=51.14  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             cCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec-
Q 022233          167 LGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC-  228 (300)
Q Consensus       167 l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~-  228 (300)
                      +.|.+|++||=| ++.++.+..+..+|++|.+..+..-...              +  .....+++|+++++|+|..-+ 
T Consensus       153 l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w  232 (321)
T 1oth_A          153 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW  232 (321)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             cCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEecc
Confidence            679999999985 4888888888899999988876432110              1  233578999999999999843 


Q ss_pred             ---CCChhh--------hhcchHHHHhcCCCCcEEEEcC
Q 022233          229 ---GLTAET--------HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       229 ---p~~~~t--------~~li~~~~l~~mk~ga~lIn~s  256 (300)
                         ....+.        ..-++.+.++.+|++++|.-+.
T Consensus       233 ~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          233 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             ccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence               111110        1345889999999999999986

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.43  E-value=0.0044  Score=56.93  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--------CCEEE-EECCCCCCCCC---------------C-cccC---CHHHHh-hc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--------GCSIS-YNSRTKKPSVS---------------Y-PFYS---NVCELA-AN  220 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--------g~~V~-~~~~~~~~~~~---------------~-~~~~---~l~e~l-~~  220 (300)
                      .+|||||+|.||+.+++.+...        +++|. +.+++......               . ..+.   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4899999999999999998754        35664 56766432111               1 1223   788887 35


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCc
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQGEI  275 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~~i  275 (300)
                      .|+|+.++|.. .+.+.--+-....++.|--+|-..-..+ .+.++|.++.++.++
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            79999999975 1111111233455666766666544443 244677777666554

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.41  E-value=0.0041  Score=56.55  Aligned_cols=92  Identities=18%  Similarity=0.271  Sum_probs=59.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CC--cccCCHHHHhhcCCEEEEecCCCh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV---------------SY--PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~---------------~~--~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      +|+|||.|.||.++|..+...|+ +|..+|.+.+...               ..  ....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999887677 6999998754211               11  111344 67999999999966432


Q ss_pred             h-----------hhhcchHHH---HhcCCCCcEEEEcCCCcccCHHHH
Q 022233          233 E-----------THHMINKQV---LSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       233 ~-----------t~~li~~~~---l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      .           +-.++ .+.   +....|++++|+++  .++|.-+.
T Consensus        80 k~G~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~t--NPv~~~t~  124 (308)
T 2d4a_B           80 KPGMTREQLLEANANTM-ADLAEKIKAYAKDAIVVITT--NPVDAMTY  124 (308)
T ss_dssp             CSSCCTHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECC--SSHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeC--CchHHHHH
Confidence            1           11111 122   22235889999984  46665443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.37  E-value=0.012  Score=53.53  Aligned_cols=35  Identities=29%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ..++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3679999998 9999999999999999999998865

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.36  E-value=0.0032  Score=58.00  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=59.3

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC--------CC--------CcccCCHHHHhhcCCEEEEecCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS--------VS--------YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------~~--------~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .+++|.|.|. |.||+.+++.|...|++|.+.+|+....        .+        .....++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            3678999994 9999999999999999999888765431        01        11122366778999999976653


Q ss_pred             ChhhhhcchHHHHhcCCC-C--cEEEEcCCCc
Q 022233          231 TAETHHMINKQVLSALGK-E--GVVINIGRGP  259 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~-g--a~lIn~srg~  259 (300)
                      ...........++..+++ |  ..||.+|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            311111223444444322 3  3788887764

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.35  E-value=0.013  Score=53.92  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCcc-----------------cCCHHHHhhcCCEEE
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSYPF-----------------YSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~~~-----------------~~~l~e~l~~aDvV~  225 (300)
                      +|||+|+|.||+.+++.+... ++++. +.+++....      .+...                 ..++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            899999999999999999865 46765 456543210      01111                 114456667899999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      .|+|.....+  .-..+   ++.|+.+|+.|-
T Consensus        83 ~aTp~~~s~~--~a~~~---~~aG~kvV~~sa  109 (340)
T 1b7g_O           83 DTTPNGVGAQ--YKPIY---LQLQRNAIFQGG  109 (340)
T ss_dssp             ECCSTTHHHH--HHHHH---HHTTCEEEECTT
T ss_pred             ECCCCchhHH--HHHHH---HHcCCeEEEeCC
Confidence            9998654322  11222   234666666643

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.34  E-value=0.022  Score=52.97  Aligned_cols=90  Identities=13%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCC-CC--CC-------------C--CcccCCHHHHhhcCCEEEE
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTK-KP--SV-------------S--YPFYSNVCELAANCDILII  226 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~-~~--~~-------------~--~~~~~~l~e~l~~aDvV~l  226 (300)
                      +.|.+|++||=|  ++..+++..+..+|++|.+..+.. .+  ..             +  .....+++|++++||||..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            779999999998  789999999999999998887642 11  10             1  2335789999999999987


Q ss_pred             ec----CCChh---h------hhcchHHHHhcCCCCcEEEEcC
Q 022233          227 CC----GLTAE---T------HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       227 ~~----p~~~~---t------~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      -+    ....+   .      .--++.+.++.+|++++|.-+.
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            32    11111   0      1246889999999999999885

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.32  E-value=0.0028  Score=56.74  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             CCEEEEEec-ChhHHHHHHHHH-hCCCEEE-EECCCCCCC-------------CCCcccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLD-AFGCSIS-YNSRTKKPS-------------VSYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~-~~g~~V~-~~~~~~~~~-------------~~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .++|+|+|+ |+||+.+++.+. .-|+++. ++++.....             .+.....++++++.++|+|+-..
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            358999998 999999999877 4577775 677654321             01222457888888999999554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.32  E-value=0.0024  Score=60.08  Aligned_cols=65  Identities=15%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---------CCEEE-EECCCCCCCC------CC-cccCCHHHHhh--cCCEEEEecCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---------GCSIS-YNSRTKKPSV------SY-PFYSNVCELAA--NCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---------g~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~--~aDvV~l~~p~  230 (300)
                      .+|||||+|.||+..++.++..         +.+|. ++|++++...      +. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988888754         34664 6787654321      33 35689999996  47999999996


Q ss_pred             Chhh
Q 022233          231 TAET  234 (300)
Q Consensus       231 ~~~t  234 (300)
                      ....
T Consensus       107 ~~H~  110 (412)
T 4gqa_A          107 HLHY  110 (412)
T ss_dssp             GGHH
T ss_pred             HHHH
Confidence            6543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.30  E-value=0.014  Score=51.79  Aligned_cols=62  Identities=26%  Similarity=0.281  Sum_probs=45.6

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC--------------CCC-------cccCCHHHHhhcCCEEEE
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS--------------VSY-------PFYSNVCELAANCDILII  226 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------------~~~-------~~~~~l~e~l~~aDvV~l  226 (300)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+....              .+.       ....++.++++++|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            468999996 9999999999999999999988864211              111       112345667788888887


Q ss_pred             ecCC
Q 022233          227 CCGL  230 (300)
Q Consensus       227 ~~p~  230 (300)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            7653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.29  E-value=0.0029  Score=57.59  Aligned_cols=96  Identities=19%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|+|||.|.+|.+++..+...+  -+|..+|...+...              ......+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999998766  37999998653210              111111336779999999998864321


Q ss_pred             ---h--------hhcch--HHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          234 ---T--------HHMIN--KQVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       234 ---t--------~~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                         +        ..++.  .+.+....|.++++++  ..++|.-..+
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~  125 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA--TNPVDVMTQV  125 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC--SSSHHHHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe--cCchHHHHHH
Confidence               1        11110  0112223688999998  4556654433

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.29  E-value=0.01  Score=52.56  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999999999999888865

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.28  E-value=0.0085  Score=53.88  Aligned_cols=63  Identities=24%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----------CC-------cccCCHHHHhhc--CCEEEE
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----------SY-------PFYSNVCELAAN--CDILII  226 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----------~~-------~~~~~l~e~l~~--aDvV~l  226 (300)
                      .|++|.|.|. |.||+.+++.|...|++|.+.+|+.....           ..       ....++.++++.  .|+|+.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            5789999997 99999999999999999999988754311           11       111234556665  599888


Q ss_pred             ecCC
Q 022233          227 CCGL  230 (300)
Q Consensus       227 ~~p~  230 (300)
                      +...
T Consensus        82 ~A~~   85 (345)
T 2z1m_A           82 LAAQ   85 (345)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.28  E-value=0.0038  Score=59.85  Aligned_cols=71  Identities=20%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCCccc-CC-HHHHhhcCCEEEEecCC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSYPFY-SN-VCELAANCDILIICCGL  230 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~~~~-~~-l~e~l~~aDvV~l~~p~  230 (300)
                      |+  .-+++|++|.|||.|.+|.+.++.|...|.+|+++++...+.       ...... .. -++.+.++|+|+.+ |.
T Consensus         5 P~--~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a-t~   81 (457)
T 1pjq_A            5 PI--FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA-TD   81 (457)
T ss_dssp             EE--EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC-CS
T ss_pred             ee--EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEc-CC
Confidence            55  667999999999999999999999999999999998754321       011110 11 12346789988775 55


Q ss_pred             Chh
Q 022233          231 TAE  233 (300)
Q Consensus       231 ~~~  233 (300)
                      .++
T Consensus        82 ~~~   84 (457)
T 1pjq_A           82 DDT   84 (457)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.27  E-value=0.016  Score=52.76  Aligned_cols=95  Identities=15%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCC--CEEEEECCCCCCC------C---C--Ccc---cCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFG--CSISYNSRTKKPS------V---S--YPF---YSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g--~~V~~~~~~~~~~------~---~--~~~---~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      ++|+|||. |.+|..++..|...|  .+|..+|+.+...      .   .  ...   ..++++++++||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999999777  5898998865210      0   1  111   1357889999999999875321


Q ss_pred             h---hh-hc------chHHH---HhcCCCCcEEEEcCCCcccCHHHH
Q 022233          233 E---TH-HM------INKQV---LSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       233 ~---t~-~l------i~~~~---l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      .   ++ .+      +-.++   +....|++++|++  ..++|.-..
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~~  125 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTIP  125 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhHH
Confidence            1   11 11      11112   2223578899997  567877653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.27  E-value=0.011  Score=56.72  Aligned_cols=92  Identities=12%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             cCCCEEEEEecCh----------hHHHHHHHHHhCCCEEEEECCCCCCCC------------------CCcccCCHHHHh
Q 022233          167 LGGKRVGIVGLGS----------IGSLVAKRLDAFGCSISYNSRTKKPSV------------------SYPFYSNVCELA  218 (300)
Q Consensus       167 l~g~~vgIiG~G~----------IG~~~A~~l~~~g~~V~~~~~~~~~~~------------------~~~~~~~l~e~l  218 (300)
                      +.|++|+|+|+.-          -...+++.|...|.+|.+||+......                  ......++.+++
T Consensus       327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (467)
T 2q3e_A          327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEAC  406 (467)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHH
T ss_pred             cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHH
Confidence            6799999999974          788999999999999999999643210                  112234788899


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      ++||+|++++.-. +-+.+=-..+...|+...+++|+ |+-+
T Consensus       407 ~~ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~-r~~~  446 (467)
T 2q3e_A          407 DGAHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDG-RRVL  446 (467)
T ss_dssp             TTCSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEES-SCTT
T ss_pred             hCCcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeC-CCcC
Confidence            9999999998754 33333223455678877768887 6643

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.27  E-value=0.019  Score=51.90  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhC-CCEEEEECCCCC-C------CCCC--cccCCHHHHhhcCCEEEEecCCCh-
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAF-GCSISYNSRTKK-P------SVSY--PFYSNVCELAANCDILIICCGLTA-  232 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~-g~~V~~~~~~~~-~------~~~~--~~~~~l~e~l~~aDvV~l~~p~~~-  232 (300)
                      +.|.+|+++|=   |++.++++..+..+ |++|.+..+..- +      ..+.  ....+++|+++++|+|..-.--.+ 
T Consensus       147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er  226 (299)
T 1pg5_A          147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER  226 (299)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence            67999999998   59999999999999 999988776432 1      1122  234789999999999988654321 


Q ss_pred             -----hh-----hhcchHHHHhcCCCCcEEEEcC
Q 022233          233 -----ET-----HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       233 -----~t-----~~li~~~~l~~mk~ga~lIn~s  256 (300)
                           +-     ..-++.+.++.+|++++|.-+.
T Consensus       227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                 11     2346889999999999998886

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.26  E-value=0.0096  Score=58.28  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=59.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCC--------CcccCCHHHH-hhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVS--------YPFYSNVCEL-AANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~--------~~~~~~l~e~-l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      +++.|+|+|++|+.+|+.|...|.+|.+.+.+++....        ......|+++ +++||.++++++..+.  +++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~--ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST--NIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH--HHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH--HHHHH
Confidence            78999999999999999999999999999887664321        1122345543 7899999999886543  34545


Q ss_pred             HHHhcCCCCcEEE
Q 022233          241 QVLSALGKEGVVI  253 (300)
Q Consensus       241 ~~l~~mk~ga~lI  253 (300)
                      ...+.+.+...+|
T Consensus       427 ~~ak~l~~~~~ii  439 (565)
T 4gx0_A          427 LACRHLHSHIRIV  439 (565)
T ss_dssp             HHHHHHCSSSEEE
T ss_pred             HHHHHHCCCCEEE
Confidence            5666666663333

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.25  E-value=0.005  Score=56.59  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=46.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------CCC------------------cccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------VSY------------------PFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~~~------------------~~~~~l~e~l~~aDv  223 (300)
                      .+|||+|+|.||+.+++.+... ++++. +.+++++..      .+.                  ....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3899999999999999999865 45764 455543211      010                  223578888889999


Q ss_pred             EEEecCCChh
Q 022233          224 LIICCGLTAE  233 (300)
Q Consensus       224 V~l~~p~~~~  233 (300)
                      |+.++|....
T Consensus        83 V~~aTp~~~h   92 (334)
T 2czc_A           83 IVDATPGGIG   92 (334)
T ss_dssp             EEECCSTTHH
T ss_pred             EEECCCcccc
Confidence            9999996654

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.25  E-value=0.023  Score=52.68  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             cCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.|.+|+++|=|  ++..+++..+..+|++|.+..+..-...              +  .....+++|++++||||..-.
T Consensus       174 l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  253 (359)
T 2w37_A          174 LQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV  253 (359)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence            679999999996  9999999999999999988876432111              1  223578999999999998844


Q ss_pred             CC--C---h-h-----hhhcchHHHHhcCC---CCcEEEEcC
Q 022233          229 GL--T---A-E-----THHMINKQVLSALG---KEGVVINIG  256 (300)
Q Consensus       229 p~--~---~-~-----t~~li~~~~l~~mk---~ga~lIn~s  256 (300)
                      =.  .   . +     ..--++.+.++.+|   ++++|.-+.
T Consensus       254 w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          254 WVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             SCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             cccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            31  0   1 1     12345888999999   899999885

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.25  E-value=0.0061  Score=56.08  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---------CCEEE-EECCCCCCCCCC---cccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---------GCSIS-YNSRTKKPSVSY---PFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---------g~~V~-~~~~~~~~~~~~---~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+|||||+|.||+.+++.+...         +++|. +++++.....+.   ..+.++++++ +.|+|+.++|.......
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            3899999999999999998765         45664 567765433221   2345778888 99999999986532121


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhC
Q 022233          237 MINKQVLSALGKEGVVINIGRGPI-IDEQELVRCLVQG  273 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~~-vd~~aL~~aL~~~  273 (300)
                      .    ..+.++.|--+|-..-..+ ...++|.++.++.
T Consensus        83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    1233445544444322222 2456666666655

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.24  E-value=0.026  Score=53.71  Aligned_cols=105  Identities=18%  Similarity=0.277  Sum_probs=69.9

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC---C-C----------------CCC--cccCCHHHHh-h
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK---P-S----------------VSY--PFYSNVCELA-A  219 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~---~-~----------------~~~--~~~~~l~e~l-~  219 (300)
                      |.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+..   + .                .++  ....+.++++ .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            446889999999999999999999999999987 5554310   0 0                000  0122445655 4


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .||+++-|..     .+.|+.+-...++ ..+++-.+-+++- .+ -.+.|.+++|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            7999998854     3446666666663 5677888888764 33 34566666664

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.24  E-value=0.029  Score=51.56  Aligned_cols=98  Identities=11%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +.|.+|++||= +++.++.+..+..+|++|.+..+..-...              +  .....+++|+++++|||..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            77999999997 57888888899999999988776432111              1  2235689999999999987542


Q ss_pred             CC------hh-----hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          230 LT------AE-----THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       230 ~~------~~-----t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      -.      ++     ..--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  305 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGE  305 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            21      01     11346889999999999999997   77655543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.22  E-value=0.0077  Score=54.09  Aligned_cols=65  Identities=15%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC--------------------CCCCcccCCHHHHhhcCCEE
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP--------------------SVSYPFYSNVCELAANCDIL  224 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~--------------------~~~~~~~~~l~e~l~~aDvV  224 (300)
                      .+.|++|.|.|. |.||+.+++.|...|++|.+.+|+...                    ........+++++++..|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            367899999998 999999999999999999988875321                    00111223556777889999


Q ss_pred             EEecCC
Q 022233          225 IICCGL  230 (300)
Q Consensus       225 ~l~~p~  230 (300)
                      +.+...
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            887653

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.22  E-value=0.0077  Score=56.98  Aligned_cols=61  Identities=21%  Similarity=0.379  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhcCCEEEE
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|.++++++....          .......+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            36799999999999999999999999999999987654310          11112245567788999884

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.17  E-value=0.015  Score=53.51  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|++++|.|||+|.+|..+|+.|...|. +++++|..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46899999999999999999999999998 78887764

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.16  E-value=0.0056  Score=56.69  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC-CEEEEEC--CCCCCC-C----C-------------Ccc-cCCHHHHhh-cCCEEE
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG-CSISYNS--RTKKPS-V----S-------------YPF-YSNVCELAA-NCDILI  225 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~--~~~~~~-~----~-------------~~~-~~~l~e~l~-~aDvV~  225 (300)
                      .+|+|+| .|.||+.+++.|.... ++|....  +..... .    +             ... ..+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 9999999999998765 5776553  221110 0    0             000 014455556 899999


Q ss_pred             EecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          226 ICCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       226 l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +|+|.....+  +-..+   ++.|..+|+.+-
T Consensus        89 ~atp~~~~~~--~a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLAKK--FEPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHHHH--HHHHH---HHTTCEEEECCS
T ss_pred             ECCCchHHHH--HHHHH---HHCCCEEEECCc
Confidence            9998543222  11222   356888999874

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.16  E-value=0.033  Score=50.86  Aligned_cols=98  Identities=20%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +.|.+|++||= +++..+.+..+..+|++|.+..+..-...              +  .....+++|+++++|||..-.=
T Consensus       155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w  234 (323)
T 3gd5_A          155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW  234 (323)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence            67999999996 57888899899999999988776432111              1  2345789999999999987542


Q ss_pred             CCh--h----------hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          230 LTA--E----------THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       230 ~~~--~----------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      -..  +          ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~e  284 (323)
T 3gd5_A          235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDE  284 (323)
T ss_dssp             C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHH
Confidence            111  0          11246899999999999999885   67555543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.14  E-value=0.0095  Score=53.75  Aligned_cols=67  Identities=12%  Similarity=-0.014  Sum_probs=49.8

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CC-------cccCCHHHHhh--cCCEEEE
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SY-------PFYSNVCELAA--NCDILII  226 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~-------~~~~~l~e~l~--~aDvV~l  226 (300)
                      ...+.||+|.|.|. |.||+.+++.|...|++|.+.+|+.....       ..       ....+++++++  ..|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            34688999999997 99999999999999999999888543211       11       11123556777  8999988


Q ss_pred             ecCC
Q 022233          227 CCGL  230 (300)
Q Consensus       227 ~~p~  230 (300)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7754

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.12  E-value=0.0054  Score=52.83  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCEEEEEecChhHHHHHHHH--HhCCCEEE-EECCCCC-CC-----CCCc--ccCCHHHHhhc--CCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRL--DAFGCSIS-YNSRTKK-PS-----VSYP--FYSNVCELAAN--CDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l--~~~g~~V~-~~~~~~~-~~-----~~~~--~~~~l~e~l~~--aDvV~l~~p~~~  232 (300)
                      ..+++|+|.|++|+++++.+  ...|+++. ++|.++. ..     .+..  ..+++++++++  .|++++++|...
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~  160 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTE  160 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence            45899999999999999973  45688875 5676655 21     1222  23577888764  899999999654

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.11  E-value=0.11  Score=47.18  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             cC-CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          167 LG-GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~-g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +. |.+|++||= +++..+.+..+..+|++|.+..+..-...              +  .....+++|+++++|+|..-.
T Consensus       143 l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~  222 (307)
T 3tpf_A          143 QNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDT  222 (307)
T ss_dssp             GGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecC
Confidence            77 999999996 57888888899999999988776432111              1  123468999999999998865


Q ss_pred             C--CCh--h--------hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          229 G--LTA--E--------THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 p--~~~--~--------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      =  ...  +        ..--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       223 w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          223 WVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             SSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            1  111  1        12346889999999999999986   67656554

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.11  E-value=0.011  Score=56.67  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             CCEEEEEecChh-HHHHHHHHHh--C---CCEEEEECCCC--CCC---------------CCC--cccCCHHHHhhcCCE
Q 022233          169 GKRVGIVGLGSI-GSLVAKRLDA--F---GCSISYNSRTK--KPS---------------VSY--PFYSNVCELAANCDI  223 (300)
Q Consensus       169 g~~vgIiG~G~I-G~~~A~~l~~--~---g~~V~~~~~~~--~~~---------------~~~--~~~~~l~e~l~~aDv  223 (300)
                      .++|+|||.|.. |.+++..|..  .   +.+|..||+..  +..               ...  ....++.+++++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999999 8887776665  2   45799999977  321               011  123578899999999


Q ss_pred             EEEecCCChh---hh----------------------------hcch--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          224 LIICCGLTAE---TH----------------------------HMIN--KQVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       224 V~l~~p~~~~---t~----------------------------~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      |++++|....   ++                            .++.  .+......|++++||.+-.--+-+.++.+..
T Consensus        87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~  166 (450)
T 1s6y_A           87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  166 (450)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999995421   11                            0110  1223334689999999876545555555543


Q ss_pred             HhCCceEE
Q 022233          271 VQGEIKGA  278 (300)
Q Consensus       271 ~~~~i~~a  278 (300)
                      ...++.|.
T Consensus       167 p~~rViG~  174 (450)
T 1s6y_A          167 KQEKVVGL  174 (450)
T ss_dssp             CCCCEEEC
T ss_pred             CCCCEEEe
Confidence            22255443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.11  E-value=0.01  Score=54.61  Aligned_cols=98  Identities=12%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------C-----C---cccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------S-----Y---PFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------~-----~---~~~~~l~e~l~~aDvV~l~  227 (300)
                      ....++|+|||.|.||..+|..+...|.  +|..+|.+.+...        .     .   ....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999988787  8999998653210        0     0   1123444 59999999998


Q ss_pred             cCCCh---hhh-hcch--H-------HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          228 CGLTA---ETH-HMIN--K-------QVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       228 ~p~~~---~t~-~li~--~-------~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      .....   .++ .++.  .       +.+....|++++++++  .++|.-..
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvdi~t~  144 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVDILTY  144 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHHHHHH
Confidence            64321   122 1221  1       1233347899999998  45664443

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.09  E-value=0.019  Score=54.36  Aligned_cols=105  Identities=15%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC----C---CCCC--------------------cccCCHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK----P---SVSY--------------------PFYSNVC  215 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~----~---~~~~--------------------~~~~~l~  215 (300)
                      |.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.+    .   ..+.                    ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            446889999999999999999999999999987 4555521    0   0000                    0011123


Q ss_pred             HHh-hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          216 ELA-ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       216 e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +++ ..||+++-|.+     .+.|+.+-...+ +..+++-.+-+++- .+ -.+.|++++|.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            333 36898888753     445777777777 46678888888864 33 34556666664

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.07  E-value=0.006  Score=58.24  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc--CCHHHHhhc-CCEEEEe--cCC-
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY--SNVCELAAN-CDILIIC--CGL-  230 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~--~~l~e~l~~-aDvV~l~--~p~-  230 (300)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|......         .+....  ...++++.+ +|+|++.  +|. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4679999999999999999999999999999999864211         122211  123345666 8999886  332 


Q ss_pred             Chhhh-------hcchH-HHHhcCCCC-cEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          231 TAETH-------HMINK-QVLSALGKE-GVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       231 ~~~t~-------~li~~-~~l~~mk~g-a~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      +|...       .++.+ +++..+.+. .+-|-=+.|..--..-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22211       13333 334333333 33444457776666667777776543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.07  E-value=0.0081  Score=54.36  Aligned_cols=67  Identities=12%  Similarity=0.078  Sum_probs=46.8

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .....+|+|.|.|. |.||+.+++.|...|++|.+.+|+.....      ......++.++++++|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            34688999999998 99999999999999999999988764311      111223566788999999877654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.06  E-value=0.0063  Score=55.73  Aligned_cols=86  Identities=24%  Similarity=0.399  Sum_probs=60.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-cCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-YSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      |.+|.|+|.|.||...++.++.+|.+|++.+++++..     .++.. ..+.+++.+..|+|+-++.....     -...
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~~  251 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKDY  251 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHHH
Confidence            7799999999999999999999999999988776542     12221 12333333468999988764422     2456


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                      +..++++..++.++...
T Consensus       252 ~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          252 LKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HTTEEEEEEEEECCCCC
T ss_pred             HHHHhcCCEEEEECCCC
Confidence            67788888888876433

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.04  E-value=0.0031  Score=56.43  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.|+++.|+| .|.||+++++.|...|++|++.+|+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            5689999999 99999999999999999999998864

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.04  E-value=0.012  Score=51.92  Aligned_cols=62  Identities=13%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhC-CCEEEEECCCCCCCC-----C-------CcccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAF-GCSISYNSRTKKPSV-----S-------YPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~-----~-------~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      |+|.|.| .|.||+.+++.|... |.+|.+..|++....     +       .....++.++++.+|+|+.+....
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            4789999 599999999999987 899999888754321     1       112235677899999999887643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.03  E-value=0.013  Score=53.52  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCC--CEEEEECCCCCCC--------C-C--Ccc---cCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFG--CSISYNSRTKKPS--------V-S--YPF---YSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~--------~-~--~~~---~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+...        . .  ...   ..++.+++++||+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            46999999 8999999999998878  6888888654310        0 1  011   125678899999999998633


Q ss_pred             hh---hh-hc------chHHHH---hcCCCCcEEEEcCCCcccCHH
Q 022233          232 AE---TH-HM------INKQVL---SALGKEGVVINIGRGPIIDEQ  264 (300)
Q Consensus       232 ~~---t~-~l------i~~~~l---~~mk~ga~lIn~srg~~vd~~  264 (300)
                      ..   ++ .+      +-.++.   ....+.+++++.+  .++|.-
T Consensus        88 ~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~~  131 (326)
T 1smk_A           88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNST  131 (326)
T ss_dssp             CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHHH
Confidence            21   00 00      111222   2235778888874  567763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.03  E-value=0.01  Score=56.79  Aligned_cols=93  Identities=14%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             cccCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCC----CC--CcccCCHHHHhhcCCEEEEec
Q 022233          165 SKLGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPS----VS--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       165 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      ..+.|++|+|+|+-          .=...+++.|...|.+|.+||+...+.    .+  .....+++++++.+|.|++++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t  393 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVT  393 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECS
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEcc
Confidence            34789999999984          346889999999999999999875321    11  234468889999999999998


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      .-.+ -+.+=-..+.+.|+ +.+++|+ |+-+
T Consensus       394 ~~~~-f~~~~~~~~~~~~~-~~~i~D~-r~~~  422 (450)
T 3gg2_A          394 EWKE-FRMPDWSALSQAMA-ASLVIDG-RNVY  422 (450)
T ss_dssp             CCGG-GSSCCHHHHHHHSS-SCEEEES-SCCC
T ss_pred             CCHH-HhhcCHHHHHHhcC-CCEEEEC-CCCC
Confidence            6443 33222234455576 5689996 6543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.01  E-value=0.013  Score=54.29  Aligned_cols=64  Identities=11%  Similarity=0.110  Sum_probs=46.0

Q ss_pred             CEEEEEe-cChhHHH-HH----HHHHhCC-CEE----------EEECCCCCCC------CCC-cccCCHHHHhhc--CCE
Q 022233          170 KRVGIVG-LGSIGSL-VA----KRLDAFG-CSI----------SYNSRTKKPS------VSY-PFYSNVCELAAN--CDI  223 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~-~A----~~l~~~g-~~V----------~~~~~~~~~~------~~~-~~~~~l~e~l~~--aDv  223 (300)
                      .+||||| +|.||+. .+    +.++..+ ..+          .+++++++..      .+. ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4899999 9999998 66    6666544 232          3788876532      133 346899999976  899


Q ss_pred             EEEecCCChh
Q 022233          224 LIICCGLTAE  233 (300)
Q Consensus       224 V~l~~p~~~~  233 (300)
                      |++++|....
T Consensus        87 V~i~tp~~~h   96 (383)
T 3oqb_A           87 FFDAATTQAR   96 (383)
T ss_dssp             EEECSCSSSS
T ss_pred             EEECCCchHH
Confidence            9999996543

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.00  E-value=0.031  Score=51.22  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCC---C---------------CC--CcccCCHHHHhhcCCE
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKP---S---------------VS--YPFYSNVCELAANCDI  223 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~---~---------------~~--~~~~~~l~e~l~~aDv  223 (300)
                      .+.|.+|++||=|  ++.++.+..+..+|++|.+..+..-.   .               .+  .....+++|+++++||
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            4789999999986  88999999999999999887764321   1               12  2245789999999999


Q ss_pred             EEEe----cCCChh---------hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          224 LIIC----CGLTAE---------THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       224 V~l~----~p~~~~---------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      |..-    +...++         ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~e  294 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTAS  294 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHH
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHH
Confidence            9863    221111         12346889999999999999886   67655543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.99  E-value=0.0056  Score=56.41  Aligned_cols=84  Identities=20%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             CEEEEEecChhHHHHHHHHHh-CCCEEEE-ECCCCCCC------CC------------------CcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA-FGCSISY-NSRTKKPS------VS------------------YPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~-~g~~V~~-~~~~~~~~------~~------------------~~~~~~l~e~l~~aDv  223 (300)
                      .+|||+|+|.||+.+++.|.. -++++.+ .++.+...      .+                  .....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            389999999999999999986 4567754 44432210      00                  0001256677889999


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      |+.|+|.....+  +-..++   +.|..+|+.+-.
T Consensus        82 V~~atp~~~~~~--~a~~~l---~aG~~VId~sp~  111 (337)
T 1cf2_P           82 VIDCTPEGIGAK--NLKMYK---EKGIKAIFQGGE  111 (337)
T ss_dssp             EEECCSTTHHHH--HHHHHH---HHTCCEEECTTS
T ss_pred             EEECCCchhhHH--HHHHHH---HcCCEEEEecCC
Confidence            999998654333  222333   334445555443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.97  E-value=0.01  Score=53.12  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             ccccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCCCCC-----------------CCcccCCHHHHhh----
Q 022233          164 GSKLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKKPSV-----------------SYPFYSNVCELAA----  219 (300)
Q Consensus       164 g~~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~~~l~e~l~----  219 (300)
                      ...+.||++.|.|.+   .||+.+|+.|...|++|.+.+|+.....                 ......+++++++    
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999986   8999999999999999998888743210                 0111123334443    


Q ss_pred             ---cCCEEEEecCCChh--------------hhhc----------chHHHHhcCCCCcEEEEcCCC
Q 022233          220 ---NCDILIICCGLTAE--------------THHM----------INKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       220 ---~aDvV~l~~p~~~~--------------t~~l----------i~~~~l~~mk~ga~lIn~srg  258 (300)
                         .-|+++.+.-....              ....          +.+..+..|+++..|||+|..
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence               56999987643211              0111          124456778888899998764

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.95  E-value=0.094  Score=49.55  Aligned_cols=105  Identities=20%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHh-CCCEEE-EECCCCC---C-----------------CCCC--cccCCHHHHh-
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDA-FGCSIS-YNSRTKK---P-----------------SVSY--PFYSNVCELA-  218 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~-~g~~V~-~~~~~~~---~-----------------~~~~--~~~~~l~e~l-  218 (300)
                      |.++.|++|.|.|+|++|+..|+.|.. .|.+|+ +.|.+..   +                 ..++  ....+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            456899999999999999999999998 999987 5554310   0                 0000  0112445655 


Q ss_pred             hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       219 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ..||+++-|..     .+.|+.+-...++ ..+++-.+-+++- .++ .+.|.+++|.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            47999998864     3447777777774 5577777777753 433 4566776664

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.94  E-value=0.012  Score=53.67  Aligned_cols=106  Identities=19%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             CCEEEEEecChhHHH-HHHHHHhCCCEEEEECCCCCCC-------CCCccc--CCHHHHh-hcCCEEEEe--cC-CChhh
Q 022233          169 GKRVGIVGLGSIGSL-VAKRLDAFGCSISYNSRTKKPS-------VSYPFY--SNVCELA-ANCDILIIC--CG-LTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~-~A~~l~~~g~~V~~~~~~~~~~-------~~~~~~--~~l~e~l-~~aDvV~l~--~p-~~~~t  234 (300)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.       .+....  .+.+++. .++|+|+..  +| .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            579999999999996 9999999999999999865421       122211  2344444 579999986  33 23332


Q ss_pred             h-------hcchH-HHHhc--CCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          235 H-------HMINK-QVLSA--LGKE-GVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       235 ~-------~li~~-~~l~~--mk~g-a~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      .       .++.+ +++..  ++.. .+-|-=+.|..--..-+...|++..
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            2       13332 33443  3322 3445556788777777777887654

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.94  E-value=0.023  Score=53.78  Aligned_cols=105  Identities=24%  Similarity=0.353  Sum_probs=71.8

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC---C-------------CCC-C----cccCCHHHHh-hc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK---P-------------SVS-Y----PFYSNVCELA-AN  220 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~---~-------------~~~-~----~~~~~l~e~l-~~  220 (300)
                      |.++.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+..   +             ..+ .    ....+.++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999975 5555410   0             001 0    1122445644 56


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ||+++=|..     .+.|+.+-...++ -.+++-.+-+++ .. +-.+.|+++.|.
T Consensus       296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~-eA~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TI-DATKILNERGVL  343 (424)
T ss_dssp             CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CH-HHHHHHHHTTCE
T ss_pred             ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CH-HHHHHHHHCCCE
Confidence            999987754     3557766666674 567788888885 33 445777777774

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.91  E-value=0.017  Score=55.94  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCC--cccCCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSY--PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~--~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +|+|.|.| .|.||+.+++.|...|++|++.+|+.......  .....+.+++.++|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            78999999 69999999999999999999998876543211  1123456778899999877653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.91  E-value=0.016  Score=51.81  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC-CC-------------CCCC-------cccCCHHHHhhcCCEEEE
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK-KP-------------SVSY-------PFYSNVCELAANCDILII  226 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~-~~-------------~~~~-------~~~~~l~e~l~~aDvV~l  226 (300)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+. ..             ..+.       ....++.++++++|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999999999999888875 11             0111       112346677888888887


Q ss_pred             ecCC
Q 022233          227 CCGL  230 (300)
Q Consensus       227 ~~p~  230 (300)
                      +...
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            7653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.90  E-value=0.0041  Score=57.44  Aligned_cols=88  Identities=24%  Similarity=0.420  Sum_probs=62.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC---CCC-----CCCcccC--CHHHHh----hcCCEEEEecCCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK---KPS-----VSYPFYS--NVCELA----ANCDILIICCGLT  231 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~---~~~-----~~~~~~~--~l~e~l----~~aDvV~l~~p~~  231 (300)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   +..     .++...+  ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4679999999999999999999999999999988876   321     1222110  111222    3589999998754


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ...   + ...+..|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            322   0 456788899999999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.023  Score=52.47  Aligned_cols=85  Identities=18%  Similarity=0.258  Sum_probs=61.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc----c---CCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF----Y---SNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++..     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            37899999999999999999999999 899988765432     12211    1   23444333     4899999886


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...+..++++ ..+|.++-
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence            4222     24567889998 88888864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.89  E-value=0.025  Score=50.52  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCC-------cccCCHHHHhhcCCEEEEecC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSY-------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~-------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+....         .+.       ....++.++++++|+|+.+.+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            358999995 9999999999999999999888875311         111       112345667778888877665

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.88  E-value=0.022  Score=52.53  Aligned_cols=85  Identities=22%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc----c---CCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF----Y---SNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++..     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            37899999999999999999999999 899988765432     12221    1   23444333     4899999886


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEecc
Confidence            4222     24567788998 88888763

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.86  E-value=0.015  Score=52.85  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             CEEEEEecChhHHHHHHHHHh--CCCEE-EEECCCCCC-C------CCCc-ccCCHHHHhh-----cCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDA--FGCSI-SYNSRTKKP-S------VSYP-FYSNVCELAA-----NCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~--~g~~V-~~~~~~~~~-~------~~~~-~~~~l~e~l~-----~aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.||+.+++.+..  -++++ .+.+++++. .      .+.. ...+.+++++     +.|+|++++|....
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h   84 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHH
Confidence            489999999999999999954  35665 467776544 1      1222 2346677764     47999999983322


Q ss_pred             hhhcchHHHHhcCCCCcEEEE
Q 022233          234 THHMINKQVLSALGKEGVVIN  254 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn  254 (300)
                      .+  +....++. ++|..+++
T Consensus        85 ~~--~a~~al~a-~~Gk~Vi~  102 (312)
T 1nvm_B           85 VQ--NEALLRQA-KPGIRLID  102 (312)
T ss_dssp             HH--HHHHHHHH-CTTCEEEE
T ss_pred             HH--HHHHHHHh-CCCCEEEE
Confidence            22  22222221 33777777

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.86  E-value=0.012  Score=56.50  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=73.0

Q ss_pred             cCCCEEEEEecC----hhHHHHHHHHHhCC-CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          167 LGGKRVGIVGLG----SIGSLVAKRLDAFG-CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       167 l~g~~vgIiG~G----~IG~~~A~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++-++|+|||.+    ++|..+.+.|+..| ..|+..++......+...+.++.|+....|++++++|. +.+...+. +
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v~-e   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLI-Q   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHH-H
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCH-HHHHHHHH-H
Confidence            557899999998    89999999999885 67888887654444666678899988889999999984 33444443 2


Q ss_pred             HHhcCCCCcEEEEcCCC--cccC-----HHHHHHHHHhCCce
Q 022233          242 VLSALGKEGVVINIGRG--PIID-----EQELVRCLVQGEIK  276 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg--~~vd-----~~aL~~aL~~~~i~  276 (300)
                      ..+. .-..+ |..+.|  +.-+     ++++.+++++.++.
T Consensus        84 ~~~~-Gi~~v-v~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGEK-GVKGV-VIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHHH-TCCEE-EECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHc-CCCEE-EEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            2222 22233 333333  2223     67788888876664

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.86  E-value=0.0029  Score=60.74  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=46.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------cccCCHHHH-hhcCCEEEEecCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSY-------PFYSNVCEL-AANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~-------~~~~~l~e~-l~~aDvV~l~~p~  230 (300)
                      .|+|-|+|+|++|+.+|+.|...|++|++.|.+++..      .+.       .....|+++ +++||+++.+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            5799999999999999999999999999998875431      111       122345555 7889988876653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.85  E-value=0.033  Score=48.53  Aligned_cols=37  Identities=19%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEec-Ch--hHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGL-GS--IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~--IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ++.||++.|.|. |.  ||+++|+.|...|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999997 45  99999999999999999887764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.85  E-value=0.017  Score=57.01  Aligned_cols=36  Identities=25%  Similarity=0.543  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSR  200 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~  200 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~  359 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN  359 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            56899999999999999999999999998 7888864

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.83  E-value=0.0089  Score=57.00  Aligned_cols=106  Identities=17%  Similarity=0.269  Sum_probs=69.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC---CCCCCc---------------------------ccCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK---PSVSYP---------------------------FYSN  213 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~---~~~~~~---------------------------~~~~  213 (300)
                      +.++.|+||.|=|+|++|+.+|+.|...|.+|+..+-+.-   ...+..                           .+.+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            4468999999999999999999999999999875432110   000000                           0001


Q ss_pred             HHHH-hhcCCEEEEecCCChhhhhcchHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          214 VCEL-AANCDILIICCGLTAETHHMINKQVLSALGKE--GVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       214 l~e~-l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~g--a~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      -+++ -..||+.+=|.     +.+.|+.+....++..  .++++-+-+.+- .++ .+.|.++.|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t-~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTT-IEA-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCC-HHH-HHHHHHCCCE
Confidence            1122 23699888774     4566888877777643  477888887754 333 3667777775

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.83  E-value=0.016  Score=57.28  Aligned_cols=73  Identities=23%  Similarity=0.416  Sum_probs=51.3

Q ss_pred             CeEEEeCCC-CCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcc-cccCCCEEEEEecChhHHHHH
Q 022233          108 GITVANAGN-VFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIG-SKLGGKRVGIVGLGSIGSLVA  185 (300)
Q Consensus       108 gI~v~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g-~~l~g~~vgIiG~G~IG~~~A  185 (300)
                      +-++.+-.. ......||...-+-|-++|          -.-|.      .+     | ..|++++|.|||+|.+|..+|
T Consensus       284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~----------wRllp------~~-----g~ekL~~arVLIVGaGGLGs~vA  342 (615)
T 4gsl_A          284 APRVVDLSSLLDPLKIADQSVDLNLKLMK----------WRILP------DL-----NLDIIKNTKVLLLGAGTLGCYVS  342 (615)
T ss_dssp             CCEEEECHHHHCHHHHHHHHHHHHHHHHH----------HHTCT------TC-----CHHHHHTCEEEEECCSHHHHHHH
T ss_pred             ceeEEeccccCCHHHHHhhhhhhhhHHHH----------Hhhcc------hh-----hHHHHhCCeEEEECCCHHHHHHH
Confidence            345555433 3566777777766554433          22333      11     3 368999999999999999999


Q ss_pred             HHHHhCCC-EEEEECCC
Q 022233          186 KRLDAFGC-SISYNSRT  201 (300)
Q Consensus       186 ~~l~~~g~-~V~~~~~~  201 (300)
                      +.|...|. +++.+|..
T Consensus       343 ~~La~aGVG~ItLvD~D  359 (615)
T 4gsl_A          343 RALIAWGVRKITFVDNG  359 (615)
T ss_dssp             HHHHHTTCCEEEEECCC
T ss_pred             HHHHHcCCCEEEEEcCC
Confidence            99999998 78888764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.81  E-value=0.051  Score=50.22  Aligned_cols=87  Identities=23%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCC-EEEEECCCCCCC-----------CCCcc-cCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----------VSYPF-YSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----------~~~~~-~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -.+||||| .|..|+.+.++|..... ++..........           ..... ..+.++++.++|++++|+|...  
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~--   90 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA--   90 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH--
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH--
Confidence            45899997 69999999999998754 665443221110           01111 1245566688999999999553  


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd  262 (300)
                          .++..+.+ .|..+||.|.-==.+
T Consensus        91 ----s~~~~~~~-~g~~VIDlSsdfRl~  113 (351)
T 1vkn_A           91 ----SYDLVREL-KGVKIIDLGADFRFD  113 (351)
T ss_dssp             ----HHHHHTTC-CSCEEEESSSTTTCS
T ss_pred             ----HHHHHHHh-CCCEEEECChhhhCC
Confidence                34455566 899999998543333

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.81  E-value=0.081  Score=50.46  Aligned_cols=121  Identities=14%  Similarity=0.227  Sum_probs=90.9

Q ss_pred             CeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHH
Q 022233          108 GITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKR  187 (300)
Q Consensus       108 gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~  187 (300)
                      .|+|.|..   -.-+|=-+++-+++.+|-.                          |..|.+.+|.|.|.|.-|-.+|+.
T Consensus       187 ~ipvFnDD---~qGTA~V~lAgllnAlki~--------------------------gk~l~d~riV~~GAGaAGigia~l  237 (487)
T 3nv9_A          187 DIPVWHDD---QQGTASVTLAGLLNALKLV--------------------------KKDIHECRMVFIGAGSSNTTCLRL  237 (487)
T ss_dssp             SSCEEETT---THHHHHHHHHHHHHHHHHH--------------------------TCCGGGCCEEEECCSHHHHHHHHH
T ss_pred             cCCccccc---cchHHHHHHHHHHHHHHHh--------------------------CCChhhcEEEEECCCHHHHHHHHH
Confidence            79999985   3456777888888876631                          455788899999999999999999


Q ss_pred             HHhCCC---EEEEECCCC----CCC-C----------------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          188 LDAFGC---SISYNSRTK----KPS-V----------------SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       188 l~~~g~---~V~~~~~~~----~~~-~----------------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      +...|.   +|+.+|+..    ... .                ......+|.|+++.+|+++=.- ..  ..++++++.+
T Consensus       238 l~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V  314 (487)
T 3nv9_A          238 IVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWI  314 (487)
T ss_dssp             HHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHH
T ss_pred             HHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHH
Confidence            999998   788887642    110 0                0012357999999999766542 11  1468999999


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 022233          244 SALGKEGVVINIGRGPI  260 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~  260 (300)
                      +.|.+..++.-.|....
T Consensus       315 ~~Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          315 KSMGEKPIVFCCANPVP  331 (487)
T ss_dssp             HTSCSSCEEEECCSSSC
T ss_pred             HhhcCCCEEEECCCCCc
Confidence            99999999999997765

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.81  E-value=0.12  Score=47.54  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+.|.+|++||= +++..+++..+..+|++|.+..+..-...              +  .....+++ +++++|||..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            477999999996 67888999999999999988776432111              1  22346888 999999999733


Q ss_pred             --CC-----C-hh----h--hhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          229 --GL-----T-AE----T--HHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 --p~-----~-~~----t--~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                        ..     . .+    .  .--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~e  303 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  303 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence              11     0 11    1  1346888899999999999886   66555543

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.81  E-value=0.016  Score=52.72  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +.|.+|+++|=|   ++.++++..+..+|++|.+..+..-...          +.  ....+++++++++|+|..-.=-.
T Consensus       153 l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~  232 (308)
T 1ml4_A          153 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK  232 (308)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             CCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccc
Confidence            679999999984   8999999999999999988876432111          22  23478999999999998854211


Q ss_pred             ------hhh-----hhcchHHHHhcCCCCcEEEEcC
Q 022233          232 ------AET-----HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ------~~t-----~~li~~~~l~~mk~ga~lIn~s  256 (300)
                            ++-     .--++.+.++.+|++++|.-+.
T Consensus       233 er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          233 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             cccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence                  111     1235778888889999988875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.79  E-value=0.025  Score=52.20  Aligned_cols=85  Identities=20%  Similarity=0.244  Sum_probs=60.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc----c---CCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF----Y---SNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++..     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            37899999999999999999999999 899988765432     13221    1   23444332     5899999886


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...+..++++ ..+|.++-
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIET-----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHHhcCCCEEEEEcc
Confidence            4222     24567888998 88888763

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.79  E-value=0.018  Score=51.95  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~  202 (300)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            35899999999999999999999999997 788887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.011  Score=54.11  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc------cCCHHHHhh-----cCCEEEEecCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF------YSNVCELAA-----NCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~------~~~l~e~l~-----~aDvV~l~~p~~  231 (300)
                      |++|.|+|. |.||..+++.++..|++|++.+++.+..     .+...      ..++.+.+.     ..|+|+.++...
T Consensus       170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~  249 (347)
T 2hcy_A          170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE  249 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcH
Confidence            789999999 8999999999999999999888765421     12111      134444443     479999887632


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +.     ....+..|+++..+|+++.
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          250 AA-----IEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HH-----HHHHTTSEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEeC
Confidence            22     2456778888888888874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.75  E-value=0.023  Score=52.36  Aligned_cols=85  Identities=22%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc----c---CCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF----Y---SNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++++..     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            37899999999999999999999999 899988765532     12211    1   23444333     4899999886


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEec
Confidence            4222     24567889998 88888863

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.75  E-value=0.028  Score=51.95  Aligned_cols=85  Identities=16%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc----c---CCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF----Y---SNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~----~---~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++..     .++..    .   .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            37899999999999999999999999 899988765532     12221    1   23444332     5899999876


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...++.++++ ..+|.++-
T Consensus       275 ~~~~-----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQT-----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHHH-----HHHHHHHhhcCCCEEEEECC
Confidence            3222     24567888998 88887763

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.74  E-value=0.065  Score=49.56  Aligned_cols=93  Identities=9%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             ccccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCC-C---------------C--CCcccCCHHHHhhcCCEE
Q 022233          164 GSKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKP-S---------------V--SYPFYSNVCELAANCDIL  224 (300)
Q Consensus       164 g~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~-~---------------~--~~~~~~~l~e~l~~aDvV  224 (300)
                      ...|.|.+|++||=+ ++..+++..+..+|++|.+..+..-. .               .  .+....+++|+++++|||
T Consensus       183 ~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVv  262 (353)
T 3sds_A          183 SLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVI  262 (353)
T ss_dssp             CCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEE
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEE
Confidence            345899999999976 57788888888999999887764321 1               0  122357899999999999


Q ss_pred             EEec--CCChh----------hhhcchHHHHhc--CCCCcEEEEcC
Q 022233          225 IICC--GLTAE----------THHMINKQVLSA--LGKEGVVINIG  256 (300)
Q Consensus       225 ~l~~--p~~~~----------t~~li~~~~l~~--mk~ga~lIn~s  256 (300)
                      ..-.  +...+          ...-++.+.++.  +|++++|.-+.
T Consensus       263 ytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          263 VTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             EECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             EeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            8743  22211          112468899988  89999999886

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.73  E-value=0.0078  Score=55.10  Aligned_cols=85  Identities=24%  Similarity=0.280  Sum_probs=59.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHhh------cCCEEEEecCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELAA------NCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~------~aDvV~l~~p~  230 (300)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++++..     .++..     ..++.+.+.      ..|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 999998865421     12211     123433332      58999998864


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      .+.     -...+..++++..++.++.
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEcc
Confidence            322     2355677788888888764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.72  E-value=0.034  Score=50.79  Aligned_cols=97  Identities=11%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCC----CC----------CC-CCC----cccCCHHHHhhcC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRT----KK----------PS-VSY----PFYSNVCELAANC  221 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~----~~----------~~-~~~----~~~~~l~e~l~~a  221 (300)
                      .++|+|+|. |.+|+.++..|...|+       +|..+|+.    .+          .. ...    ....++.+++++|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            359999998 9999999999988775       78889887    21          00 011    1125788999999


Q ss_pred             CEEEEecCCChh---hh-hcc------hHHH---HhcC-CCCcEEEEcCCCcccCHHHHH
Q 022233          222 DILIICCGLTAE---TH-HMI------NKQV---LSAL-GKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       222 DvV~l~~p~~~~---t~-~li------~~~~---l~~m-k~ga~lIn~srg~~vd~~aL~  267 (300)
                      |+|+++......   ++ .++      -.++   +... ++.+++|++|  .++|.-..+
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S--NPv~~~t~~  142 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG--NPANTNAYI  142 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc--CchHHHHHH
Confidence            999987653211   11 011      1122   2233 4788999997  455544433

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.72  E-value=0.0075  Score=55.93  Aligned_cols=84  Identities=19%  Similarity=0.346  Sum_probs=59.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---cCC---HHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---YSN---VCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~~~---l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |.+|.|+|.|.||...++.++.+|++|++.+++++..     .++..   ..+   .+++....|+|+-++.....    
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~----  270 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN----  270 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH----
Confidence            7799999999999999999999999998888765432     12211   111   22233568999998864321    


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                       -...++.++++..+|.++.
T Consensus       271 -~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          271 -LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             -HHHHHTTEEEEEEEEECCC
T ss_pred             -HHHHHHHhccCCEEEEecc
Confidence             2355677888888888764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.71  E-value=0.026  Score=49.69  Aligned_cols=60  Identities=13%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-CCcccCCHHHHhhc--CCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-SYPFYSNVCELAAN--CDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-~~~~~~~l~e~l~~--aDvV~l~~p~  230 (300)
                      |+|.|.|. |.||+.+++.|. .|++|.+.+|+..... ......++.+++++  +|+|+.+...
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEECccc
Confidence            47899997 999999999999 7999999998753211 12223356677776  9999887653

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.70  E-value=0.0046  Score=57.00  Aligned_cols=64  Identities=9%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--------CCEEE-EECCCCCCCC------CC-cccCCHHHHhhc--CCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--------GCSIS-YNSRTKKPSV------SY-PFYSNVCELAAN--CDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--------g~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~~--aDvV~l~~p~~  231 (300)
                      -+|||||+|.||+.-++.++..        +.+|. ++|++++...      +. ..+.++++++++  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999888877643        23554 6787754321      22 346789999964  79999999966


Q ss_pred             hh
Q 022233          232 AE  233 (300)
Q Consensus       232 ~~  233 (300)
                      -.
T Consensus        87 ~H   88 (390)
T 4h3v_A           87 SH   88 (390)
T ss_dssp             GH
T ss_pred             HH
Confidence            54

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.70  E-value=0.0095  Score=56.89  Aligned_cols=103  Identities=12%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCCC-------C----------------------CcccCCHHHHh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV-------S----------------------YPFYSNVCELA  218 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~-------~----------------------~~~~~~l~e~l  218 (300)
                      .+|||||+|.||+.+++.+... +++|. ++|++.+...       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            3899999999999999988754 66764 6777654210       1                      12357899999


Q ss_pred             h--cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHhCCce
Q 022233          219 A--NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRG-PIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       219 ~--~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg-~~vd~~aL~~aL~~~~i~  276 (300)
                      +  +.|+|++++|... ...   +-....|+.|.-++-..-+ ...+.+.|.++.++.++.
T Consensus       104 ~d~dIDaVviaTp~p~-~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-VGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCHH-HHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCChH-HHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  4899999998542 211   1223445555555532211 122345677766665554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.69  E-value=0.0063  Score=55.59  Aligned_cols=85  Identities=12%  Similarity=0.259  Sum_probs=59.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHHHh----hcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCELA----ANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e~l----~~aDvV~l~~p~~~~t  234 (300)
                      |++|.|+|.|.||..+++.++.+|++|++.+++++..     .++..     ..++.+.+    ...|+|+.++...+. 
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~-  243 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA-  243 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH-
Confidence            7799999999999999999999999999998765321     12211     12333322    468999998764222 


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                          ....++.|+++..+|.++..
T Consensus       244 ----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 ----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             ----HHHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHhhcCCEEEEeccc
Confidence                24566778888888887643

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.67  E-value=0.017  Score=53.61  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=55.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc--C
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA--L  246 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~--m  246 (300)
                      -.++.|+|.|.+++++|+.++.+|++|+++|.++....        .+-+..+|-++..-|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~--------~~~fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE--------KHFFPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC--------GGGCTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc--------cccCCCceEEecCCH----------HHHHhhcCC
Confidence            44899999999999999999999999999887654211        111234454443322          111222  4


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHh
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQ  272 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~  272 (300)
                      .+++.+|=+.++.-.|...|..+|+.
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~  286 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEK  286 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSS
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcC
Confidence            45566666666666666666666654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.66  E-value=0.11  Score=46.83  Aligned_cols=64  Identities=20%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      +.|.+|+++|=   +++.++.+..+..+|++|.+..+..-...     +.....+++|+++++|+|.. +-..
T Consensus       144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q  215 (291)
T 3d6n_B          144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQ  215 (291)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence            67999999997   89999999999999999988776432111     23446789999999999999 6654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.65  E-value=0.06  Score=47.23  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCCCCCcccCCHHHHhh-cCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPSVSYPFYSNVCELAA-NCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      ++|+|+|+ |+||+.+++.+... |+++. ++++.          .++++++. .+|+|+-+.+... +..    .....
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT~p~a-~~~----~~~~a   65 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFTHPDV-VMG----NLEFL   65 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECSCTTT-HHH----HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEccChHH-HHH----HHHHH
Confidence            47999996 99999999998865 88876 55553          35667665 7999985553222 221    12222


Q ss_pred             CCCCcEEEEcCCC
Q 022233          246 LGKEGVVINIGRG  258 (300)
Q Consensus       246 mk~ga~lIn~srg  258 (300)
                      ++.|.-+|-...|
T Consensus        66 ~~~g~~~VigTTG   78 (245)
T 1p9l_A           66 IDNGIHAVVGTTG   78 (245)
T ss_dssp             HHTTCEEEECCCC
T ss_pred             HHcCCCEEEcCCC
Confidence            4455555555556

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.64  E-value=0.017  Score=50.28  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=59.4

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC------CcccCCHHHHhhc-------CCEEEEecCC---
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS------YPFYSNVCELAAN-------CDILIICCGL---  230 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~------~~~~~~l~e~l~~-------aDvV~l~~p~---  230 (300)
                      .||++.|.|. |.||+.+|+.|...|++|++.+|+......      .....++++++++       -|+|+.+.-.   
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~  100 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSG  100 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCCC
Confidence            4789999996 679999999999999999999887654321      1111234444443       4988887642   


Q ss_pred             ----Chhh----hhc----------chHHHHhcCCCCcEEEEcCCCc
Q 022233          231 ----TAET----HHM----------INKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       231 ----~~~t----~~l----------i~~~~l~~mk~ga~lIn~srg~  259 (300)
                          ...+    +.+          +.+..+..|+++..||++|...
T Consensus       101 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          101 GNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                1111    111          1234556677778899988654

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.63  E-value=0.034  Score=50.51  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhC-CCEEEEECCCCCCCC----------CC--cccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAF-GCSISYNSRTKKPSV----------SY--PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~----------~~--~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +.|.+|+++|=   |++.++++..+..+ |++|.+..+..-...          +.  ....+++|+++++|+|..-.=-
T Consensus       152 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (310)
T 3csu_A          152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ  231 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC--
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            67999999998   59999999999999 999988776432111          22  2347899999999999886431


Q ss_pred             Ch----hh------hhcchHHHHhcCCCCcEEEEcC-CCcccC
Q 022233          231 TA----ET------HHMINKQVLSALGKEGVVINIG-RGPIID  262 (300)
Q Consensus       231 ~~----~t------~~li~~~~l~~mk~ga~lIn~s-rg~~vd  262 (300)
                      .+    +.      .--++.+.++.+|++++|.-+. ||.=|+
T Consensus       232 ~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~  274 (310)
T 3csu_A          232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIA  274 (310)
T ss_dssp             ---------------CCBCGGGGTTCCTTCEEECCSCCSSSBC
T ss_pred             ccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeec
Confidence            11    11      1345778888889999998886 544444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.62  E-value=0.02  Score=51.02  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +++|.|.| .|.||+.+++.|...|++|.+.+|+.....         ... ..++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47999999 699999999999999999999988733211         122 34567788899999887654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.62  E-value=0.054  Score=47.99  Aligned_cols=62  Identities=19%  Similarity=0.150  Sum_probs=44.9

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-------------CCCC-------cccCCHHHHhhcCCEEEEe
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-------------SVSY-------PFYSNVCELAANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-------------~~~~-------~~~~~l~e~l~~aDvV~l~  227 (300)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+...             ..+.       ....++.++++++|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            468999995 999999999999999999999887421             0111       1123456677788888777


Q ss_pred             cCC
Q 022233          228 CGL  230 (300)
Q Consensus       228 ~p~  230 (300)
                      ...
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.62  E-value=0.016  Score=49.80  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC--------CcccCCHHHHhh---------cCCEEEEecC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS--------YPFYSNVCELAA---------NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~--------~~~~~~l~e~l~---------~aDvV~l~~p  229 (300)
                      .||++.|.|. |.||+.+|+.|...|++|+..+|+......        .....+++++++         ..|+|+.+.-
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            4788999985 789999999999999999998887654221        111122333333         6798888764


Q ss_pred             CC-------hhh----hhcc----------hHHHHhcCCCCcEEEEcCCCc
Q 022233          230 LT-------AET----HHMI----------NKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       230 ~~-------~~t----~~li----------~~~~l~~mk~ga~lIn~srg~  259 (300)
                      ..       +.+    +.++          .+..++.|+++..+||+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            21       111    1111          234556676677899988653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.61  E-value=0.016  Score=53.65  Aligned_cols=36  Identities=33%  Similarity=0.410  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      .|.+++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus       115 ~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          115 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5889999999999999999999999998 78877764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.60  E-value=0.0096  Score=54.81  Aligned_cols=84  Identities=27%  Similarity=0.443  Sum_probs=58.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCccc-----C-CHHHHh-hcCCEEEEecCCC--hhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFY-----S-NVCELA-ANCDILIICCGLT--AET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~-----~-~l~e~l-~~aDvV~l~~p~~--~~t  234 (300)
                      |.+|.|+|.|.||...++.++.+|++|++.+++++...     ++...     . ++.+.+ ...|+|+-++..+  .. 
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~-  258 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID-  258 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH-
Confidence            77999999999999999999999999999887665421     22211     1 333322 4689999998752  22 


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                         + ...++.++++..++.++.
T Consensus       259 ---~-~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          259 ---F-NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ---T-TTGGGGEEEEEEEEECCC
T ss_pred             ---H-HHHHHHhcCCCEEEEecC
Confidence               1 244567788888877753

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.60  E-value=0.0037  Score=58.37  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChh--hhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF--GCSIS-YNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAE--THHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~--g~~V~-~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~--t~~l  237 (300)
                      ..+|||||.| +|+.-++.++..  ++++. +++++.+..      .++..+.++++++.+.|++++++|..-.  ...-
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~   85 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQ   85 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHH
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHH
Confidence            4589999999 799888877765  57765 678876532      2555678999999999999999986432  1001


Q ss_pred             chHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          238 INKQVLSALGKEG-VVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       238 i~~~~l~~mk~ga-~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +....++   .|. +++.-= -.+-+.++|+++.++.++.
T Consensus        86 ~a~~al~---aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~  121 (372)
T 4gmf_A           86 LARHFLA---RGVHVIQEHP-LHPDDISSLQTLAQEQGCC  121 (372)
T ss_dssp             HHHHHHH---TTCEEEEESC-CCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHH---cCCcEEEecC-CCHHHHHHHHHHHHHcCCE
Confidence            2222222   232 222211 1234666777777766665

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.59  E-value=0.039  Score=51.04  Aligned_cols=85  Identities=24%  Similarity=0.283  Sum_probs=60.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-------cCCHHHHhh-----cCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-------YSNVCELAA-----NCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-------~~~l~e~l~-----~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++..     .++..       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            37899999999999999999999999 899998776531     23221       123444333     4899999886


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     -...+..+++| ..++.++-
T Consensus       273 ~~~~-----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 NVSV-----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhccCCEEEEEcc
Confidence            4222     24567788986 88888763

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.59  E-value=0.03  Score=49.90  Aligned_cols=95  Identities=24%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC----------CC---------CcccCCHHHHhh-----
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS----------VS---------YPFYSNVCELAA-----  219 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~---------~~~~~~l~e~l~-----  219 (300)
                      .++.||++.|.|. |.||+++|+.|...|++|.+.+++....          .+         .....+++++++     
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999999997 6899999999999999998887765310          01         011122333443     


Q ss_pred             --cCCEEEEecCCC----------hh-hhh----------cchHHHHhcCCCCcEEEEcCCCc
Q 022233          220 --NCDILIICCGLT----------AE-THH----------MINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       220 --~aDvV~l~~p~~----------~~-t~~----------li~~~~l~~mk~ga~lIn~srg~  259 (300)
                        .-|+++.+.-..          .+ -+.          .+.+..+..|+++..|||++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence              679998874321          10 011          12345567788888999998653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.58  E-value=0.006  Score=55.63  Aligned_cols=82  Identities=11%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYP-------FYSNVCEL-AANCDILIICCGLTAETHH  236 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+++.|+|+|.+|+.+++.|...|. |.+.+++++..    .+..       ....++++ +++||.|+++++..+.+  
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n--  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET--  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHH--
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHH--
Confidence            5689999999999999999999999 99998876422    1111       11234444 78899999998755333  


Q ss_pred             cchHHHHhcCCCCcEEE
Q 022233          237 MINKQVLSALGKEGVVI  253 (300)
Q Consensus       237 li~~~~l~~mk~ga~lI  253 (300)
                      +.-....+.+.+...+|
T Consensus       192 ~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          192 IHCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHCCCCeEE
Confidence            34445556666663333

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.57  E-value=0.075  Score=50.27  Aligned_cols=105  Identities=16%  Similarity=0.239  Sum_probs=70.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC-----CCCC-----------C-Cc-ccCCHHHHh-hcCCE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK-----KPSV-----------S-YP-FYSNVCELA-ANCDI  223 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~-----~~~~-----------~-~~-~~~~l~e~l-~~aDv  223 (300)
                      |.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.     +...           + .. +..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            446889999999999999999999999999987 555521     0000           0 00 011123333 47999


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++-|..     .+.|+.+-...++- .+++.-+-+++- .+ -.+.|++++|.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~-A~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PE-AEAYLLGKGAL  337 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HH-HHHHHHHHTCE
T ss_pred             EEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HH-HHHHHHHCCCE
Confidence            988853     45577777777753 588999988864 43 34667766664

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.57  E-value=0.018  Score=53.02  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=53.3

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhC-CCEEEEE-CCCC--CCCC----------CC-c-ccC---CHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAF-GCSISYN-SRTK--KPSV----------SY-P-FYS---NVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~-~~~~--~~~~----------~~-~-~~~---~l~e~l~~aDvV~l~~p  229 (300)
                      .+|+|+| .|.+|+.+.+.|... .+++... +++.  ....          +. . ...   +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            4899999 699999999999974 4576544 3331  1100          10 0 111   34455589999999998


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .....+ + -..   .++.|+.+||.|.--
T Consensus        85 ~~~s~~-~-~~~---~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           85 HEVSHD-L-APQ---FLEAGCVVFDLSGAF  109 (337)
T ss_dssp             HHHHHH-H-HHH---HHHTTCEEEECSSTT
T ss_pred             hHHHHH-H-HHH---HHHCCCEEEEcCCcc
Confidence            433222 1 122   246799999998553

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.57  E-value=0.14  Score=47.29  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEec
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+.|.+|++||= +++..+++..+..+|++|.+..+..-...              +  .....+++ +++++|||..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            477999999996 68888999999999999988776432111              1  22356888 999999998732


Q ss_pred             ----CC---C-hh----h--hhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          229 ----GL---T-AE----T--HHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 ----p~---~-~~----t--~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                          ..   . .+    .  .--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  281 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  281 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence                10   0 11    0  1346888999999999999886   66555543

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.55  E-value=0.054  Score=47.44  Aligned_cols=64  Identities=22%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCC-------cccCCHHHHhh-------cCCEEEEecC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSY-------PFYSNVCELAA-------NCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~-------~~~~~l~e~l~-------~aDvV~l~~p  229 (300)
                      ++.||++.|.|. |.||+.+|+.|...|++|+..+|+.......       ....+++++++       ..|+|+.+.-
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            478999999985 7899999999999999999888865432111       11123344444       6899998764

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.55  E-value=0.0091  Score=57.04  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHh----------CCCEEE-EECCCCCCC----CCCcccCCHHHHhh--cCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA----------FGCSIS-YNSRTKKPS----VSYPFYSNVCELAA--NCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~----------~g~~V~-~~~~~~~~~----~~~~~~~~l~e~l~--~aDvV~l~~p~~  231 (300)
                      -.+|||||+|.||+.+++.+..          .+.+|. +++++....    .+...+.+++++++  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3489999999999999987753          355664 567654321    12345678999987  479999999853


Q ss_pred             -hhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 022233          232 -AETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEIK  276 (300)
Q Consensus       232 -~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i~  276 (300)
                       ..-. +    ....++.|.-++-.--+... +.++|.++.++.++.
T Consensus        90 ~~h~~-~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPARE-L----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHH-H----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHH-H----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence             3322 1    23445556555543222222 336777777766554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.52  E-value=0.035  Score=50.75  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=59.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---c---CC-HHH---Hh-----hcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---Y---SN-VCE---LA-----ANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~---~~-l~e---~l-----~~aDvV~l~~  228 (300)
                      |.+|.|+|.|.+|...++.++.+|.+|++.+++++..     .++..   .   .+ .++   ..     ...|+|+-++
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~  248 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS  248 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECC
Confidence            7799999999999999999999999998887764321     12211   1   12 222   22     2589999988


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      .....     -...+..++++..+|.++.+
T Consensus       249 g~~~~-----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          249 GNEKC-----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCHHH-----HHHHHHHHhcCCEEEEEecC
Confidence            64322     24567788999999998743

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.51  E-value=0.023  Score=52.71  Aligned_cols=84  Identities=13%  Similarity=0.066  Sum_probs=49.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--C--CEEE-EECCCCCC--CC--CCcccCCHHHHhhcC-------------------
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--G--CSIS-YNSRTKKP--SV--SYPFYSNVCELAANC-------------------  221 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g--~~V~-~~~~~~~~--~~--~~~~~~~l~e~l~~a-------------------  221 (300)
                      .+|||||+|.||+.+++.+...  |  ++|. +.++....  ..  +...+.++++++++.                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            3899999999999999999875  3  4654 45543221  11  222234566666543                   


Q ss_pred             -CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          222 -DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       222 -DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                       |+|+.|+|.......     ....|+.|--+|-..-.
T Consensus        85 ~DvVV~~t~~~~~a~~-----~~~AL~aGkhVVtaNkk  117 (358)
T 1ebf_A           85 PVILVDNTSSAYIAGF-----YTKFVENGISIATPNKK  117 (358)
T ss_dssp             CEEEEECSCCHHHHTT-----HHHHHHTTCEEECCCCG
T ss_pred             CcEEEEcCCChHHHHH-----HHHHHHCCCeEEecCcc
Confidence             789999886432221     12344555555543333

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.49  E-value=0.012  Score=50.18  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh---cCCEEEEecCCC-h--------
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA---NCDILIICCGLT-A--------  232 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~---~aDvV~l~~p~~-~--------  232 (300)
                      .+.||++.|.|. |-||+++|+.|...|++|.+.+|+..  .......+++++++   .-|+++.+.-.. +        
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--LDISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--CCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--cCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            367899999997 68999999999999999999988754  12222233444443   579888765432 0        


Q ss_pred             -h-hhh----------cchHHHHhcCCCCcEEEEcCCC
Q 022233          233 -E-THH----------MINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       233 -~-t~~----------li~~~~l~~mk~ga~lIn~srg  258 (300)
                       + -+.          .+.+..++.|+++..+||+|..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence             0 000          1123456678878889999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.49  E-value=0.025  Score=48.70  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC--------CcccCCHHHHhh---------cCCEEEEec
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS--------YPFYSNVCELAA---------NCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~--------~~~~~~l~e~l~---------~aDvV~l~~  228 (300)
                      ..+|++.|.|. |.||+.+|+.|...|++|+..+|+......        .....+++++++         ..|+|+.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            56889999985 689999999999999999998887644221        111123333433         679888875


Q ss_pred             CCC-------hhh----hhc----------chHHHHhcCCCCcEEEEcCCCc
Q 022233          229 GLT-------AET----HHM----------INKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       229 p~~-------~~t----~~l----------i~~~~l~~mk~ga~lIn~srg~  259 (300)
                      -..       +.+    +..          +.+..++.|+++..+||+|...
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            421       111    111          1234456676677899998654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.48  E-value=0.051  Score=48.34  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~  231 (300)
                      +++|.|.| .|.||+.+++.|...|++|++.+++..  .......++.++++  .+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~--~D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--LNLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--CCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc--CCccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            57999999 599999999999999999988876532  12222345677788  899998876543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.44  E-value=0.032  Score=52.18  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHh------hcCCEEEEecCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELA------ANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l------~~aDvV~l~~p~  230 (300)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++++..     .++..     ..++.+.+      ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            47899999999999999999999999 899988765431     12211     12333322      258999999875


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ...+...+...+...++++..++.++-
T Consensus       293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            422221111111233389999998863

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.44  E-value=0.018  Score=53.44  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEEECC-CCCC-----------C---C-CC---------------ccc--CCHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISYNSR-TKKP-----------S---V-SY---------------PFY--SNVC  215 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~-~~~~-----------~---~-~~---------------~~~--~~l~  215 (300)
                      .+|||+|+|.||+.+.|.|... .++|.+.+. ....           .   . +.               ...  .+++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            3899999999999999999876 578765432 2111           0   0 00               011  1444


Q ss_pred             HH-h--hcCCEEEEecCCChhhhhcchHHHHhcCCCCc--EEEEcCC
Q 022233          216 EL-A--ANCDILIICCGLTAETHHMINKQVLSALGKEG--VVINIGR  257 (300)
Q Consensus       216 e~-l--~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga--~lIn~sr  257 (300)
                      ++ +  .++|+|+.++|.....     +..-..++.|+  ++|+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCC
Confidence            43 2  5799999999854321     22234467788  9998864

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.44  E-value=0.013  Score=51.32  Aligned_cols=62  Identities=19%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCC---------CcccCCHHHHhhcCCEEEEecC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVS---------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~---------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+|+|.|.| .|.||+.+++.|...|++|.+.+|+......         .....++.+++++.|+|+.+.-
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            367899999 6999999999999999999999887654321         1122356678899999988754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.44  E-value=0.019  Score=50.79  Aligned_cols=61  Identities=18%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCC-CEEEEECCCCCCC-------CCC-------cccCCHHHHhhcCCEEEEecC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFG-CSISYNSRTKKPS-------VSY-------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~~~~~~~~-------~~~-------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .++|.|.|. |.||+.+++.|...| ++|.+.+|++...       .+.       ....++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            579999998 999999999999888 9999888875431       111       112356678899999998765

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.42  E-value=0.029  Score=49.96  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CCcccCCHHHHhhc--CCEEEEecCCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SYPFYSNVCELAAN--CDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~~~~~~l~e~l~~--aDvV~l~~p~~  231 (300)
                      -++|.|.| .|.||+.+++.|...|++|.+.+|+.....        ......++.++++.  .|+|+.+....
T Consensus        12 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   85 (321)
T 2pk3_A           12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS   85 (321)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred             cceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence            56888887 499999999999999999999888754311        11112345566765  89998876543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.42  E-value=0.007  Score=53.04  Aligned_cols=60  Identities=15%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             EEEEEec-ChhHHHHHHHHHhC--CCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCC
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAF--GCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~--g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++....     +.       ....++.++++++|+|+.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4778886 99999999999988  999998888654321     11       1123466788899999877653

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.41  E-value=0.029  Score=51.59  Aligned_cols=66  Identities=21%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCC-CEEEEECCCCCCC-------CCC-------cccCCHHHHhhcCCEEEEecC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFG-CSISYNSRTKKPS-------VSY-------PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~~~~~~~~-------~~~-------~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+.+++|.|.|. |.||+.+++.|...| ++|.+.+|+....       ...       ....++.++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            478999999995 999999999999999 9999998865431       111       111235567788999988766


Q ss_pred             CC
Q 022233          230 LT  231 (300)
Q Consensus       230 ~~  231 (300)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.40  E-value=0.014  Score=53.66  Aligned_cols=84  Identities=17%  Similarity=0.079  Sum_probs=50.8

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC---CEEEEEC-CCCCCC-C---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG---CSISYNS-RTKKPS-V---SYP-FYSNV-CELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g---~~V~~~~-~~~~~~-~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      .+|+|+| .|.||+.+.+.|...+   +++.... ++.... .   +.. ...++ .+.+.++|+|+.|+|.....+ . 
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~-~-   81 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK-W-   81 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH-H-
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH-H-
Confidence            5899999 9999999999998763   4665443 322111 0   100 11111 124578999999998543222 1 


Q ss_pred             hHHHHhcCCCCcEEEEcCCC
Q 022233          239 NKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~srg  258 (300)
                      -..   .++.|+.+|+.|.-
T Consensus        82 a~~---~~~~G~~vId~s~~   98 (336)
T 2r00_A           82 API---AAEAGVVVIDNTSH   98 (336)
T ss_dssp             HHH---HHHTTCEEEECSST
T ss_pred             HHH---HHHcCCEEEEcCCc
Confidence            122   23568899998743

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.39  E-value=0.016  Score=52.39  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=59.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC--c-ccCCHHHHhhcCCEEEEecC--
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------SY--P-FYSNVCELAANCDILIICCG--  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~~--~-~~~~l~e~l~~aDvV~l~~p--  229 (300)
                      +||+|||.|.||+++|-.|+..+.  ++..+|.......             +.  . ...+-.+.+++||+|+++.-  
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999999887664  7899998653211             10  0 11222357899999999763  


Q ss_pred             CCh-hhh-hcc--hHH-------HHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          230 LTA-ETH-HMI--NKQ-------VLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       230 ~~~-~t~-~li--~~~-------~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      -.| .++ .++  |..       .+..-.|.++++.++  .++|.-..+
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~t~i  127 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYI  127 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--CcchhhHHh
Confidence            222 122 122  222       123345788888874  446655544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.37  E-value=0.039  Score=53.12  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             cCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC---------C-------CcccCCHHHHhhc
Q 022233          167 LGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV---------S-------YPFYSNVCELAAN  220 (300)
Q Consensus       167 l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~-------~~~~~~l~e~l~~  220 (300)
                      +.|++|+|+|+          ..-...+++.|...|.+|.+||+......         +       .....++.+.+++
T Consensus       333 ~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (481)
T 2o3j_A          333 VTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARG  412 (481)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTT
T ss_pred             cCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcC
Confidence            68999999997          45678999999999999999999743110         0       1223577889999


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      +|+|++++.-. +-+.+=-..+.+.|+...+++|+ |+- .|.+.+
T Consensus       413 ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~-r~~-~~~~~~  455 (481)
T 2o3j_A          413 AHAIVVLTEWD-EFVELNYSQIHNDMQHPAAIFDG-RLI-LDQKAL  455 (481)
T ss_dssp             CSEEEECSCCG-GGTTSCHHHHHHHSCSSCEEEES-SSC-SCHHHH
T ss_pred             CCEEEEcCCcH-HhhccCHHHHHHhcCCCCEEEEC-CCC-CCHHHH
Confidence            99999998754 33332223455678877789987 654 565543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.37  E-value=0.014  Score=51.25  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEe---cChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVG---LGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG---~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+.||++.|.|   .|.||+++|+.|...|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            47899999999   59999999999999999999888765

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.35  E-value=0.012  Score=52.69  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCccc------CCHHHHhhcCCEEEEecCCChhhhh
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFY------SNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~------~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      |++|.|+|. |.+|..+++.++.+|++|++.+++++..     .+....      .++.+.+...|+|+. +.. +    
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~----  199 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K----  199 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T----
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H----
Confidence            779999998 9999999999999999999988765432     122211      122233467899998 754 2    


Q ss_pred             cchHHHHhcCCCCcEEEEcCC
Q 022233          237 MINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~sr  257 (300)
                       .....+..|+++..++.++.
T Consensus       200 -~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 -EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             -THHHHHTTEEEEEEEEEC--
T ss_pred             -HHHHHHHhhccCCEEEEEeC
Confidence             23567788899989888863

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.35  E-value=0.023  Score=52.32  Aligned_cols=29  Identities=31%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISYN  198 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~  198 (300)
                      .+|||+|+|+||+.+++.|... +++|.+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI   33 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAV   33 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence            3899999999999999998865 5676543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.35  E-value=0.035  Score=50.12  Aligned_cols=94  Identities=16%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCC--EEEEECC--CCCCCCC--------------CcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSR--TKKPSVS--------------YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~--~~~~~~~--------------~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|+|+| .|.+|++++..|...|.  ++..+|+  ......+              .....+..+.+++||+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999987775  6888887  4321100              00001225679999999998764


Q ss_pred             Chh---hh-hc------chHHH---HhcCCCCcEEEEcCCCcccCHHH
Q 022233          231 TAE---TH-HM------INKQV---LSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       231 ~~~---t~-~l------i~~~~---l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ...   ++ .+      +-+++   .....+.+++++.  ..++|.-.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~--SNPv~~~~  126 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT--SNPVDLLN  126 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC--CSSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEe--CChHHHHH
Confidence            321   11 01      11222   2334678899986  44555533

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.33  E-value=0.017  Score=53.06  Aligned_cols=85  Identities=29%  Similarity=0.360  Sum_probs=60.4

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcc---cCC---HHHHhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPF---YSN---VCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~---~~~---l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.+|.|+|.|.||...++.++.+|.+|++.+++++.      ..++..   ..+   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            4789999999999999999999999999988876542      223221   122   22333468999998864322  


Q ss_pred             hcchHHHHhcCCCCcEEEEcCC
Q 022233          236 HMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~sr  257 (300)
                         -...+..++++..++.++.
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               2356678889999988864

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.33  E-value=0.0076  Score=52.91  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC--CCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF--GCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~--g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      |+|.|.|. |.||+.+++.|...  |++|.+.+|+.....     +.       ....++.++++++|+|+.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            46888886 99999999999988  999999888654321     11       1123466788899999877653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.32  E-value=0.029  Score=48.08  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC-C----cccCCHHHHhh----cCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS-Y----PFYSNVCELAA----NCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-~----~~~~~l~e~l~----~aDvV~l~~p~  230 (300)
                      |++.|.|. |.||+.+++.|...|++|++.+|+...... .    ....+++++++    ..|+|+.+.-.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            47889987 999999999999999999998887543211 1    11123445555    78999887643

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.32  E-value=0.21  Score=45.58  Aligned_cols=96  Identities=5%  Similarity=-0.025  Sum_probs=70.9

Q ss_pred             cCCCEEEE-----EecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCC--h--
Q 022233          167 LGGKRVGI-----VGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLT--A--  232 (300)
Q Consensus       167 l~g~~vgI-----iG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~--~--  232 (300)
                      +. .+|++     +|=+++.++.+..+..+|++|.+..+..-...     ......+++|+++++|+|..-.=..  .  
T Consensus       167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~  245 (324)
T 1js1_X          167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN  245 (324)
T ss_dssp             CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred             ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence            55 79999     99999999999999999999988876432211     2344678999999999998833211  1  


Q ss_pred             -------hhhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          233 -------ETHHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       233 -------~t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                             ...-.++.+.++.+| +++|.-+.   ||.=|+.+
T Consensus       246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~e  286 (324)
T 1js1_X          246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDD  286 (324)
T ss_dssp             TTCCCCCCTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHH
T ss_pred             ccchHHHhcCcccCHHHHHhcC-CcEEECCCCCCCCcccCHH
Confidence                   012356889999888 99998886   56555544

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.31  E-value=0.04  Score=50.76  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEEE-CCCCCCC------CC--------------------CcccCCHHHHhhcC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISYN-SRTKKPS------VS--------------------YPFYSNVCELAANC  221 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~-~~~~~~~------~~--------------------~~~~~~l~e~l~~a  221 (300)
                      .+|||+|+|+||+.+++.|... +++|.+. +.++...      .+                    .....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998876 5776544 3321110      00                    00011344556789


Q ss_pred             CEEEEecCCChhhhhcchHHH-HhcCCCCcEEEEcC
Q 022233          222 DILIICCGLTAETHHMINKQV-LSALGKEGVVINIG  256 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~-l~~mk~ga~lIn~s  256 (300)
                      |+|+.|+|.....+     .. -..++.|..+|..+
T Consensus        83 DiV~eatg~~~s~~-----~a~~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQ-----NLENIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHH-----HHHHTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHH-----HHHHHHHHCCCEEEECC
Confidence            99999988543222     11 24567777766544

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.29  E-value=0.024  Score=50.62  Aligned_cols=94  Identities=15%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             ccCCCEEEEEecC-h--hHHHHHHHHHhCCCEEEEECCCCCCC----------C-------CCcccCCHHHHhh------
Q 022233          166 KLGGKRVGIVGLG-S--IGSLVAKRLDAFGCSISYNSRTKKPS----------V-------SYPFYSNVCELAA------  219 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~--IG~~~A~~l~~~g~~V~~~~~~~~~~----------~-------~~~~~~~l~e~l~------  219 (300)
                      .+.||++.|.|.+ .  ||+++|+.|...|++|++.+|+....          .       ......+++++++      
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            5899999999984 4  99999999999999999888763210          0       1111123333433      


Q ss_pred             -cCCEEEEecCCCh-------------h-hhh----------cchHHHHhcCCCCcEEEEcCCCc
Q 022233          220 -NCDILIICCGLTA-------------E-THH----------MINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       220 -~aDvV~l~~p~~~-------------~-t~~----------li~~~~l~~mk~ga~lIn~srg~  259 (300)
                       .-|+++.+.-...             + -..          .+.+..+..|+++..|||+|...
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence             6799998765331             0 000          12244567788888999987643

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.29  E-value=0.056  Score=51.99  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=67.0

Q ss_pred             ccCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCcccCCHHHHhh
Q 022233          166 KLGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPSV----------------SYPFYSNVCELAA  219 (300)
Q Consensus       166 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~e~l~  219 (300)
                      .+.|++|+|+|+-          .=...+++.|...|.+|.+||+......                ......++.++++
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR  404 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence            4789999999984          3567899999999999999999743210                1223457889999


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHH
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQ  264 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~  264 (300)
                      +||+|++++.-.+ -+.+--..+.+.|+. .+++|+ |+- .|.+
T Consensus       405 ~ad~~vi~t~~~~-f~~~~~~~~~~~~~~-~~i~D~-r~~-~~~~  445 (478)
T 2y0c_A          405 DADALVIVTEWKI-FKSPDFVALGRLWKT-PVIFDG-RNL-YEPE  445 (478)
T ss_dssp             TCSEEEECSCCGG-GGSCCHHHHHTTCSS-CEEEES-SCC-SCHH
T ss_pred             CCCEEEEecCChH-hhccCHHHHHhhcCC-CEEEEC-CCC-CCHH
Confidence            9999999987543 333322344556664 789998 554 4544

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.28  E-value=0.014  Score=53.67  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---CCEEEEE-CCC-----------C--CCCC--------------CC--cc--cCCH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---GCSISYN-SRT-----------K--KPSV--------------SY--PF--YSNV  214 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---g~~V~~~-~~~-----------~--~~~~--------------~~--~~--~~~l  214 (300)
                      .+|||+|+|.||+.+.|.|...   .++|.+. ++.           .  ....              +.  ..  ..++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            3799999999999999998765   4787644 431           0  0000              00  01  1144


Q ss_pred             HHH-hh--cCCEEEEecCCChhhhhcchHHHHhcCCCCc--EEEEcCCC
Q 022233          215 CEL-AA--NCDILIICCGLTAETHHMINKQVLSALGKEG--VVINIGRG  258 (300)
Q Consensus       215 ~e~-l~--~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga--~lIn~srg  258 (300)
                      +++ +.  ++|+|+.|+|.....+  .-.   ..++.|+  ++|+.+..
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e--~a~---~~l~aGakkvVId~~a~  124 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNRE--KAE---LHLQAGAKKVIITAPAK  124 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHH--HHT---HHHHTTCSEEEESSCCB
T ss_pred             HHCcccccCCCEEEECCccchhHH--HHH---HHHHcCCcEEEEeCCCC
Confidence            444 33  7999999998543322  112   2245678  89988653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.26  E-value=0.062  Score=47.88  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      .++.||++.|.|. |.||+++|+.|...|++|.+.+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3588999999996 689999999999999999988775

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.24  E-value=0.046  Score=48.22  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEec-Ch--hHHHHHHHHHhCCCEEEEECCCC
Q 022233          165 SKLGGKRVGIVGL-GS--IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~--IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            3588999999996 45  99999999999999999988865

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.24  E-value=0.014  Score=53.12  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEE-EECCCCC-CCC---------C--CcccCCHHHHhhc--CCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTKK-PSV---------S--YPFYSNVCELAAN--CDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~~-~~~---------~--~~~~~~l~e~l~~--aDvV~l~~p~~~~  233 (300)
                      .+|||||+|.+|+..++.+ .-+++|. ++|+++. ...         +  ...+.++++++++  .|+|++++|....
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H   80 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN   80 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence            4899999999999877777 5567775 6787652 210         2  2456899999975  8999999985443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.22  E-value=0.016  Score=48.47  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=44.8

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCC--EEEEECCCCCCCC-CCc-ccCCH------HHHhhcCCEEEEecCCCh
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-SYP-FYSNV------CELAANCDILIICCGLTA  232 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-~~~-~~~~l------~e~l~~aDvV~l~~p~~~  232 (300)
                      .+++|.|.| .|.||+.+++.|...|.  +|.+.+|++.... ... ...++      .+++  +|+|+.+.....
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~   77 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTI   77 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCH
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeecc
Confidence            468999999 79999999999999998  9999888765311 111 11232      2333  899998876543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.21  E-value=0.028  Score=53.35  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             CCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCCC--------C--------CcccCCHHHHhhcC
Q 022233          168 GGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPSV--------S--------YPFYSNVCELAANC  221 (300)
Q Consensus       168 ~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~--------~~~~~~l~e~l~~a  221 (300)
                      .|++|+|+|+.          .-...+++.|...|.+|.+||+......        +        .....++.+.+++|
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            58999999997          5688999999999999999998522110        0        12345788999999


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      |+|++++.-. +-+. ++   .+.|+ +.+++|+ |+-
T Consensus       392 d~~vi~~~~~-~~~~-~~---~~~~~-~~~i~D~-r~~  422 (436)
T 1mv8_A          392 DVLVLGNGDE-LFVD-LV---NKTPS-GKKLVDL-VGF  422 (436)
T ss_dssp             SEEEECSCCG-GGHH-HH---HSCCT-TCEEEES-SSC
T ss_pred             cEEEEeCCcH-HHHh-hh---HHhcC-CCEEEEC-CCC
Confidence            9999998753 3221 12   34565 6788998 543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.21  E-value=0.032  Score=50.38  Aligned_cols=65  Identities=15%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------CcccCCHHHHhhcC
Q 022233          166 KLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VS-------YPFYSNVCELAANC  221 (300)
Q Consensus       166 ~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~-------~~~~~~l~e~l~~a  221 (300)
                      .+.+++|.|.| .|.||+.+++.|...|++|.+.+|.....                ..       .....++.++++++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            36789999999 59999999999999999999998865421                11       11123466778899


Q ss_pred             CEEEEecCC
Q 022233          222 DILIICCGL  230 (300)
Q Consensus       222 DvV~l~~p~  230 (300)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            998887653

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.19  E-value=0.044  Score=48.19  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=45.8

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCC-------cccCCHHHHh-------hcCCEEEEecC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSY-------PFYSNVCELA-------ANCDILIICCG  229 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~-------~~~~~l~e~l-------~~aDvV~l~~p  229 (300)
                      ..+.||++.|.|. |.||+++|+.|...|++|...+|+.......       ....+.++++       ...|+|+.+.-
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg  103 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAG  103 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4689999999997 5799999999999999999999876543211       1111222222       36899988764


Q ss_pred             C
Q 022233          230 L  230 (300)
Q Consensus       230 ~  230 (300)
                      .
T Consensus       104 ~  104 (266)
T 3uxy_A          104 V  104 (266)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.18  E-value=0.037  Score=49.85  Aligned_cols=66  Identities=21%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             cccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------cccCCHHHHhhc--CCEEEEe
Q 022233          165 SKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS-------VSY-------PFYSNVCELAAN--CDILIIC  227 (300)
Q Consensus       165 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~~~-------~~~~~l~e~l~~--aDvV~l~  227 (300)
                      ..+.+++|.|.| .|.||+.+++.|...|++|.+.+|+....       ...       ....++++++++  .|+|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            457899999998 69999999999999999999988764321       011       111235567777  9999887


Q ss_pred             cCC
Q 022233          228 CGL  230 (300)
Q Consensus       228 ~p~  230 (300)
                      ...
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.15  E-value=0.027  Score=51.67  Aligned_cols=85  Identities=20%  Similarity=0.359  Sum_probs=59.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc---cC-----CHH-HHh----hcCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF---YS-----NVC-ELA----ANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~---~~-----~l~-e~l----~~aDvV~l~~p  229 (300)
                      |.+|.|+|.|.+|...++.++.+|. +|++.+++++..     .++..   ..     ++. ++.    ...|+|+-++.
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g  251 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG  251 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCC
Confidence            7799999999999999999999999 899888765421     13211   11     111 121    25899999886


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ....     -...+..++++..++.++-+
T Consensus       252 ~~~~-----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          252 AEAS-----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             ChHH-----HHHHHHHhcCCCEEEEEecC
Confidence            4322     24567889999999998743

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.15  E-value=0.022  Score=48.63  Aligned_cols=63  Identities=17%  Similarity=0.096  Sum_probs=47.5

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhC--CCEEEEECCCCCCC----C-------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAF--GCSISYNSRTKKPS----V-------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~----~-------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .+++|.|.| .|.||+.+++.|...  |++|...+|++...    .       ......++++++++.|+|+.+...
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            478999999 699999999999998  89999988864210    0       111223566788999999987653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.14  E-value=0.03  Score=51.13  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEe-cChhHHHHHHHHHhC-CCEEEEECCCCCCCC------C-------Cc-ccCCHHHHhhcCCEEEEecC
Q 022233          166 KLGGKRVGIVG-LGSIGSLVAKRLDAF-GCSISYNSRTKKPSV------S-------YP-FYSNVCELAANCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~~~~~~~~~------~-------~~-~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+.+++|.|.| .|.||+.+++.|... |++|.+.+|+.....      +       .. ...++.++++++|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999987 999999988764321      1       11 12245667889999987654


Q ss_pred             C
Q 022233          230 L  230 (300)
Q Consensus       230 ~  230 (300)
                      .
T Consensus       101 ~  101 (372)
T 3slg_A          101 I  101 (372)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.14  E-value=0.015  Score=53.04  Aligned_cols=85  Identities=26%  Similarity=0.237  Sum_probs=59.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC---CC-Ccc-----cCCHHHHhh-----cCCEEEEecCCCh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS---VS-YPF-----YSNVCELAA-----NCDILIICCGLTA  232 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~---~~-~~~-----~~~l~e~l~-----~aDvV~l~~p~~~  232 (300)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++++..   .. +..     ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 899988764321   01 111     123444333     5899999886422


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      .     -...+..|+++..+|.++.
T Consensus       244 ~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 A-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H-----HHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhcCCEEEEEec
Confidence            2     2455677888888888764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.13  E-value=0.074  Score=48.31  Aligned_cols=96  Identities=15%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             CEEEEEe-cChhHHHHHHHHHh---CCCEEEEECCCCCCC--------CCC--ccc----CCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDA---FGCSISYNSRTKKPS--------VSY--PFY----SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~---~g~~V~~~~~~~~~~--------~~~--~~~----~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ++|+||| .|.+|+++|..|..   +..++..+|......        ...  ...    .+..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            5899999 99999999999975   335788999875210        011  111    24678899999999987532


Q ss_pred             --h-hhh-hcc--hH----H---HHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          232 --A-ETH-HMI--NK----Q---VLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       232 --~-~t~-~li--~~----~---~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                        + .++ .++  |.    +   .+....|.+++++++  .++|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence              1 111 122  11    1   122336889999995  678777666

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.13  E-value=0.0074  Score=50.41  Aligned_cols=85  Identities=16%  Similarity=0.289  Sum_probs=58.4

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHH-H---h--hcCCEEEEecCC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCE-L---A--ANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e-~---l--~~aDvV~l~~p~  230 (300)
                      .|++|.|+| .|.||+.+++.++..|++|+..+++.+..     .+...     ..+..+ +   .  ...|+|+.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            478999999 69999999999999999999888764321     12111     112222 2   2  14799888763 


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      . .    .....+..|+++..+|+++..
T Consensus       117 ~-~----~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          117 G-E----AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             T-H----HHHHHHHTEEEEEEEEECSCG
T ss_pred             h-H----HHHHHHHHhccCCEEEEEcCC
Confidence            2 1    235667888999999998754

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.08  E-value=0.023  Score=52.26  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEE-ECC-CCCC-------------CCCC----------------c--ccCCHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISY-NSR-TKKP-------------SVSY----------------P--FYSNVC  215 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~-~~~-~~~~-------------~~~~----------------~--~~~~l~  215 (300)
                      .+|||+|+|+||+.+++.+... +++|.+ .++ ....             ....                .  ...+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            4899999999999999998753 578764 453 1110             0000                0  012455


Q ss_pred             HH-h--hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          216 EL-A--ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       216 e~-l--~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      ++ +  .++|+|+.|+|.....+     ..-..++.|+..|+++-.
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e-----~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTME-----KAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHH-----HHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhHH-----HHHHHHhCCCeEEEeccC
Confidence            55 2  57999999998543322     233456778777777655

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.07  E-value=0.03  Score=49.76  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=40.5

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC----CCCcccCCHHHHhhc--CCEEEEecCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAAN--CDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~----~~~~~~~~l~e~l~~--aDvV~l~~p~  230 (300)
                      +|+|.|.|. |.||+.+++.|...|++|.+.+|+....    .......++.++++.  .|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            679999997 9999999999999999999998764321    011123456667765  8998887643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.04  E-value=0.013  Score=53.30  Aligned_cols=85  Identities=13%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHHHhh----cCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCELAA----NCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~----~aDvV~l~~p~~~~  233 (300)
                      .|.+|.|+|.|.||...++.++.+|.+|++.+++++..     .++..     ..++.+.+.    ..|+|+.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            37899999999999999999999999999988765421     12211     123333332    57999888653322


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                           -...+..++++..++.++-
T Consensus       246 -----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECSC
T ss_pred             -----HHHHHHHhccCCEEEEeCC
Confidence                 2355677888888888753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.02  E-value=0.04  Score=50.69  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ..+++|.|.|. |.||+.+++.|...|++|.+.+|+.....     ..       ....++.++++.+|+|+.+...
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            35789999998 99999999999999999999888654321     11       1122456778899999877653

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.01  E-value=0.027  Score=53.47  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCccc--CCHHHHhhcCCEEEEecCC---Chhhh
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFY--SNVCELAANCDILIICCGL---TAETH  235 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~--~~l~e~l~~aDvV~l~~p~---~~~t~  235 (300)
                      +.+|+|.|||+|..|.+.|+.|+..|++|.++|.+....      .+....  ....+.+..+|.|++.-..   .|...
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHH
Confidence            568999999999999999999999999999998754332      122211  1124566789999987422   23322


Q ss_pred             -------hcchH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          236 -------HMINK-QVL-SALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       236 -------~li~~-~~l-~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                             .++.+ +.+ ..++...+-|-=+.|.---..-|...|++..
T Consensus        83 ~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g  130 (439)
T 2x5o_A           83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG  130 (439)
T ss_dssp             HHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   12322 122 2345445566666777776666667776643

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.97  E-value=0.017  Score=52.78  Aligned_cols=84  Identities=23%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhC--CCEEEEECCCCCCC-----CCCcccCCH---H---HHhh---cCCEEEEecCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTKKPS-----VSYPFYSNV---C---ELAA---NCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~~~~-----~~~~~~~~l---~---e~l~---~aDvV~l~~p~~  231 (300)
                      .|.+|.|+|.|.||...++.++.+  |.+|++.+++++..     .++....+.   +   +.+.   ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            588999999999999999999999  99999998765431     133221111   1   1222   579999988643


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ..     -...+..++++..++.++
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeC
Confidence            22     235567788888888776

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.96  E-value=0.041  Score=49.86  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------cccCCHHHHhhcC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS----------------VSY-------PFYSNVCELAANC  221 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------------~~~-------~~~~~l~e~l~~a  221 (300)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+.+|+....                ...       ....++.++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            477899999998 9999999999999999999988764310                111       1122456778899


Q ss_pred             CEEEEecCC
Q 022233          222 DILIICCGL  230 (300)
Q Consensus       222 DvV~l~~p~  230 (300)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999887764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.95  E-value=0.043  Score=47.96  Aligned_cols=38  Identities=34%  Similarity=0.500  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|+||++.|-|.+   -||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999974   5999999999999999999888643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.93  E-value=0.13  Score=49.49  Aligned_cols=102  Identities=16%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC---EEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC---SISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~---~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .++|.|||+|.||+.+|+.|.. .++   +|++.|+....       .++.+... ..+  .....++...   .+.+-+
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-------~~~~~~~g-~~~--~~~~Vdadnv---~~~l~a   79 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-------VDVAQQYG-VSF--KLQQITPQNY---LEVIGS   79 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-------CCHHHHHT-CEE--EECCCCTTTH---HHHTGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh-------hhHHhhcC-Cce--eEEeccchhH---HHHHHH
Confidence            3479999999999999999885 455   67777654321       13333332 233  3333333211   111112


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPD  288 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~  288 (300)
                      .++++-++||++  .....-+++++..+-++  ..+|.-. ||.
T Consensus        80 Ll~~~DvVIN~s--~~~~~l~Im~acleaGv--~YlDTa~-E~~  118 (480)
T 2ph5_A           80 TLEENDFLIDVS--IGISSLALIILCNQKGA--LYINAAT-EPW  118 (480)
T ss_dssp             GCCTTCEEEECC--SSSCHHHHHHHHHHHTC--EEEESSC-CCC
T ss_pred             HhcCCCEEEECC--ccccCHHHHHHHHHcCC--CEEECCC-Ccc
Confidence            445557788865  33455555555555555  3478766 554

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=94.92  E-value=0.084  Score=47.96  Aligned_cols=35  Identities=29%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|+|.|.| .|.||+.+++.|...|++|++.+|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            47899999 599999999999999999999888643

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.92  E-value=0.038  Score=51.76  Aligned_cols=62  Identities=18%  Similarity=0.397  Sum_probs=44.9

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----C--Cc------ccCCHHHHhhcCCEEEE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----S--YP------FYSNVCELAANCDILII  226 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~--~~------~~~~l~e~l~~aDvV~l  226 (300)
                      +....+++|+|+|-|..|+.+++.++.+|++|.+++ ++....    .  ..      ....+.++++.+|+|+.
T Consensus        19 ~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           19 GHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            455678999999999999999999999999998877 432211    1  11      11235678889999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.91  E-value=0.027  Score=52.12  Aligned_cols=84  Identities=27%  Similarity=0.400  Sum_probs=59.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHhh--------cCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELAA--------NCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~--------~aDvV~l~~p  229 (300)
                      |.+|.|+|.|.+|...++.++.+|+ +|++.+++++..     .++..     ..++.+.+.        ..|+|+-++.
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G  262 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAG  262 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCC
Confidence            7899999999999999999999999 888888765431     12211     134445444        3799998875


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..+.     -...+..++++..++.++-
T Consensus       263 ~~~~-----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          263 VAET-----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CHHH-----HHHHHHHEEEEEEEEECSC
T ss_pred             CHHH-----HHHHHHHhccCCEEEEEec
Confidence            3222     2456677888998888863

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.89  E-value=0.021  Score=49.69  Aligned_cols=61  Identities=20%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CcccCCHHHHhhcCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV--S-------YPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--~-------~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      ++|.|.|. |.||+.+++.|...|++|++.+|+.....  +       .....++.+++++.|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            58999997 99999999999999999999988764321  1       11123466788899999987653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.89  E-value=0.019  Score=52.92  Aligned_cols=84  Identities=21%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHHHh----h--cCCEEEEecCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCELA----A--NCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e~l----~--~aDvV~l~~p~~  231 (300)
                      .|.+|.|+|.|.||...++.++.+|.+|++.+++++..     .++..     ..++.+.+    .  ..|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            47899999999999999999999999999888764321     12211     12333322    2  5899998876 2


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +     .-...+..++++..++.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            2     22456778888888888763

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.84  E-value=0.075  Score=47.16  Aligned_cols=60  Identities=20%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECC-CCCC---C------C-----------CCcccCCHHHHhhcCCEEEE
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSR-TKKP---S------V-----------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~-~~~~---~------~-----------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      ||+|.|.| .|.||+.+++.|...|++|.+..| ++..   .      .           ......+++++++++|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            67899999 599999999999999999998776 4311   0      0           11112356778899999887


Q ss_pred             ec
Q 022233          227 CC  228 (300)
Q Consensus       227 ~~  228 (300)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.83  E-value=0.043  Score=49.23  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+.....     +.       ....++.++++.+|+|+.+...
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            468999995 99999999999999999999888754321     11       1123456778899999887653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.82  E-value=0.062  Score=46.43  Aligned_cols=64  Identities=20%  Similarity=0.221  Sum_probs=45.8

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC-------CcccCCHHHHhh-------cCCEEEEecC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS-------YPFYSNVCELAA-------NCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-------~~~~~~l~e~l~-------~aDvV~l~~p  229 (300)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+......       .....+++++++       ..|+|+.+.-
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            478999999985 799999999999999999998887543221       111123334443       5699988764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.79  E-value=0.039  Score=48.37  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999986 6899999999999999999988864

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.76  E-value=0.053  Score=50.00  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC-CEEEEEC--CCCCCC-C----C-----------Cc-ccC--CHHHHhhcCCEEEE
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG-CSISYNS--RTKKPS-V----S-----------YP-FYS--NVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g-~~V~~~~--~~~~~~-~----~-----------~~-~~~--~l~e~l~~aDvV~l  226 (300)
                      .+|||+| .|.||+.+.+.|.... +++....  ++.... .    +           .. .+.  +.++ +.++|+|++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            5899999 8999999999998654 4775542  221110 0    0           00 011  3333 478999999


Q ss_pred             ecCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          227 CCGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       227 ~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      |+|.....+  +-..+   ++.|..+|+.+.
T Consensus        84 atp~~~s~~--~a~~~---~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNELAES--IELEL---VKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHHHHHH--HHHHH---HHTTCEEEECSS
T ss_pred             CCChHHHHH--HHHHH---HHCCCEEEECCc
Confidence            998543222  22222   356888999874

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.73  E-value=0.054  Score=51.65  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCCC-----C-----------------CC---------CCCccc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRTK-----K-----------------PS---------VSYPFY  211 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~~-----~-----------------~~---------~~~~~~  211 (300)
                      |.++.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+.     +                 ..         .+....
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            456899999999999999999999999999885 555321     0                 00         011111


Q ss_pred             CCHHHHh-hcCCEEEEecCCChhhhhcchHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          212 SNVCELA-ANCDILIICCGLTAETHHMINKQVLSALG--KEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       212 ~~l~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       +.++++ ..||+++-|.     +.+.|+.+-...+.  +-.+++--+-+++-.+ | .+.|.+++|.
T Consensus       314 -~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e-A-~~iL~~rGI~  373 (456)
T 3r3j_A          314 -ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIK-A-LHKLKQNNII  373 (456)
T ss_dssp             -CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTT-H-HHHHHTTTCE
T ss_pred             -CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHH-H-HHHHHHCCCE
Confidence             223333 4699888774     24557777666662  2357778888886433 3 4677777774

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.72  E-value=0.026  Score=51.88  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEEE
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSISYN  198 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~~~  198 (300)
                      +|||+|+|.||+.+.|.|... .++|.+.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivai   31 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAV   31 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEE
Confidence            799999999999999998765 4677544

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=94.68  E-value=0.093  Score=47.04  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------CcccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS------------VS-------YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~~-------~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +++|.|.| .|.||+.+++.|...|++|.+..|+....            ..       .....+++++++++|+|+-+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            78999999 79999999999999999998766653321            01       111245678889999888654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.65  E-value=0.063  Score=49.20  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCCCCC-----C--C-cc------cCCHHHHh------hcCCEEEEe
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKKPSV-----S--Y-PF------YSNVCELA------ANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~~~~-----~--~-~~------~~~l~e~l------~~aDvV~l~  227 (300)
                      |.+|.|+|.|.+|...++.++.+|.+ |++.+++++...     .  . .+      ..++.+.+      ...|+|+-+
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~  259 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALEC  259 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEEC
Confidence            77999999999999999999999997 888776543210     1  0 00      01222222      258999998


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +.....     -...+..++++..++.++-
T Consensus       260 ~g~~~~-----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          260 TGVESS-----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECCC
T ss_pred             CCChHH-----HHHHHHHhcCCCEEEEEcc
Confidence            763221     2456778999999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.64  E-value=0.028  Score=51.33  Aligned_cols=83  Identities=16%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcc----cCCHHHHh----h--cCCEEEEecCCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPF----YSNVCELA----A--NCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~----~~~l~e~l----~--~aDvV~l~~p~~  231 (300)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++.+...     ++..    ..++.+.+    .  ..|+|+-++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            4789999998 99999999999999999998887654311     2211    12333322    1  478888887532


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                            .....+..++++..++.++
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             ------HHHHHHHhhcCCCEEEEEE
Confidence                  2345677888888888886

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=94.62  E-value=0.045  Score=47.20  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=57.3

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCC-C----cccCCHHHHhhcC----CEEEEecCCCh-h--hhh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVS-Y----PFYSNVCELAANC----DILIICCGLTA-E--THH  236 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~-~----~~~~~l~e~l~~a----DvV~l~~p~~~-~--t~~  236 (300)
                      |++.|.|. |.||+.+|+.|...|++|+..+|+...... .    ....++++++++.    |+|+.+.-... .  -+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            46777775 689999999999999999998887543211 1    1122445566555    99998764332 0  011


Q ss_pred             ----------cchHHHHhcCCC--CcEEEEcCCCccc
Q 022233          237 ----------MINKQVLSALGK--EGVVINIGRGPII  261 (300)
Q Consensus       237 ----------li~~~~l~~mk~--ga~lIn~srg~~v  261 (300)
                                .+.+..++.|++  +..+||+|.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence                      112344555543  3788999876554

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.61  E-value=0.085  Score=48.57  Aligned_cols=79  Identities=18%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C--cc-
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-------------VS-----------------Y--PF-  210 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-------------~~-----------------~--~~-  210 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. +++++|...-..             .+                 .  .. 
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            35889999999999999999999999998 788886532100             00                 0  00 


Q ss_pred             c----CCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          211 Y----SNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       211 ~----~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      .    ...+++++++|+|+.+. .+.+++..+++....
T Consensus       112 ~~~~~~~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~  148 (346)
T 1y8q_A          112 TEDIEKKPESFFTQFDAVCLTC-CSRDVIVKVDQICHK  148 (346)
T ss_dssp             CSCGGGCCHHHHTTCSEEEEES-CCHHHHHHHHHHHHH
T ss_pred             ecccCcchHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence            0    12356788899888765 466667666655433

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.61  E-value=0.072  Score=50.82  Aligned_cols=83  Identities=23%  Similarity=0.287  Sum_probs=60.9

Q ss_pred             ccCCCEEEEEecC----------hhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecC
Q 022233          166 KLGGKRVGIVGLG----------SIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       166 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+.|++|+|+|+.          .=...+++.|...|.+|.+||+...+.      .......+++++++++|.|++++.
T Consensus       330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~  409 (444)
T 3vtf_A          330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA  409 (444)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC
T ss_pred             ccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC
Confidence            4789999999986          237789999999999999999864221      123345789999999999999976


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                      -.+ -+. ++      + ++.+++|+ |+
T Consensus       410 h~e-f~~-ld------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          410 WPQ-YEG-LD------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             CGG-GGG-SC------C-TTCEEEES-SC
T ss_pred             CHH-HhC-CC------c-CCCEEEEC-CC
Confidence            432 222 22      2 46788886 54

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=94.59  E-value=0.022  Score=47.39  Aligned_cols=58  Identities=19%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-CCCcccCCHHHHhhc---CCEEEEecC
Q 022233          171 RVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-VSYPFYSNVCELAAN---CDILIICCG  229 (300)
Q Consensus       171 ~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-~~~~~~~~l~e~l~~---aDvV~l~~p  229 (300)
                      ++.|.|. |.||+.+++.|. .|++|...+|+.... .......++++++++   .|+|+.+.-
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence            8888885 799999999999 999999988875411 112222345566655   798888754

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=94.58  E-value=0.058  Score=49.35  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-------CCEEE-EECCCCCCC---C------------C-Cc-ccCCHHHHhh--cCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-------GCSIS-YNSRTKKPS---V------------S-YP-FYSNVCELAA--NCD  222 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-------g~~V~-~~~~~~~~~---~------------~-~~-~~~~l~e~l~--~aD  222 (300)
                      .+|||+|+|.||+.+++.+...       +.+|. +.+++....   .            + .. ...+.++++.  +.|
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD   84 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence            4899999999999999999763       45664 456543210   0            1 11 0115677764  489


Q ss_pred             EEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCc
Q 022233          223 ILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII-DEQELVRCLVQGEI  275 (300)
Q Consensus       223 vV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~aL~~aL~~~~i  275 (300)
                      +|+.++|.....+ ..-+.....++.|.-+|-..-+.+. .-+.|.++.++.+.
T Consensus        85 vVVe~T~~~~~~~-pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~  137 (325)
T 3ing_A           85 LLVDCTPASRDGV-REYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSK  137 (325)
T ss_dssp             EEEECCCCCSSSH-HHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCccccc-hHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCC
Confidence            9999998642111 0012344556778777766555543 45567776666555

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=94.53  E-value=0.13  Score=49.43  Aligned_cols=101  Identities=19%  Similarity=0.391  Sum_probs=68.2

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE-CCCCC---CC-C-------------------CCcccCCHHHH-hhc
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN-SRTKK---PS-V-------------------SYPFYSNVCEL-AAN  220 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~-~~~~~---~~-~-------------------~~~~~~~l~e~-l~~  220 (300)
                      +|.|++|.|-|+|++|+..|+.|...|.+|+.. |.+..   +. .                   +.....+  ++ -..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            488999999999999999999999999998753 32210   00 0                   0011111  32 346


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ||+++=|.     +++.|+.+-...++ -.+++-.+-++ ...+| .+.|.++.|.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            99888774     34567777777775 45778888887 45444 5677777774

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=94.53  E-value=0.12  Score=48.11  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             CEEEEEe-cChhHHHHHH-HHHhCC---CEEEEECCCCC-CCC----C--Ccc--cCCHHHHhhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVG-LGSIGSLVAK-RLDAFG---CSISYNSRTKK-PSV----S--YPF--YSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~-~l~~~g---~~V~~~~~~~~-~~~----~--~~~--~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      ++|||+| .|.+|+.+.+ .|...+   ..+..+..... ...    +  ...  ..+.++ ++++|+|+.|+|.....+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s~~   80 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYTNE   80 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhHHH
Confidence            4899999 9999999999 565544   34544332211 111    1  111  113344 589999999998432222


Q ss_pred             hcchHHHHhcCCCCc--EEEEcCCC
Q 022233          236 HMINKQVLSALGKEG--VVINIGRG  258 (300)
Q Consensus       236 ~li~~~~l~~mk~ga--~lIn~srg  258 (300)
                        +-..+   .+.|+  ++||.+..
T Consensus        81 --~a~~~---~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           81 --IYPKL---RESGWQGYWIDAASS  100 (367)
T ss_dssp             --HHHHH---HHTTCCCEEEECSST
T ss_pred             --HHHHH---HHCCCCEEEEcCChh
Confidence              22222   24565  89998743

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.52  E-value=0.15  Score=45.56  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC--CCCCcccCCHHHHhhcCCEEEEecCCChh----------h
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP--SVSYPFYSNVCELAANCDILIICCGLTAE----------T  234 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~--~~~~~~~~~l~e~l~~aDvV~l~~p~~~~----------t  234 (300)
                      +.|++|.|+|.-..-..+++.|...|++|.+.......  ..+.....++.+.++++|+|++..|....          .
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            67889999999999999999999999999876532221  11223345677788999999875432110          1


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ...++++.++.+++..++. +   + +|.-++.+++.+.+|.
T Consensus        83 ~~~~~~~~l~~~~~l~~i~-~---G-~d~id~~~~~~~~gi~  119 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY-S---G-ISNTYLNQCMKKTNRT  119 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHHTCE
T ss_pred             CccchHHHHHhCCCCCEEE-e---c-CCCHHHHHHHHHcCCe
Confidence            1136788899998877765 2   2 3666665566665554

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.49  E-value=0.063  Score=51.38  Aligned_cols=105  Identities=10%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEE-EECCC-----CCCC-------------------C-------CCccc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSIS-YNSRT-----KKPS-------------------V-------SYPFY  211 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~-~~~~~-----~~~~-------------------~-------~~~~~  211 (300)
                      |.++.|++|.|-|+|++|+..|+.|...|.+|+ +.|.+     ++-.                   .       +....
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            456889999999999999999999999999987 44431     0000                   0       01111


Q ss_pred             CCHHHH-hhcCCEEEEecCCChhhhhcchHHHHhcC-C-CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          212 SNVCEL-AANCDILIICCGLTAETHHMINKQVLSAL-G-KEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       212 ~~l~e~-l~~aDvV~l~~p~~~~t~~li~~~~l~~m-k-~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       +.+++ -..||+++-|.     +.+.|+.+-...+ + +-.+++--+-+++ ..+| .+.|++++|.
T Consensus       327 -~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 -PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             -SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             -cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence             11222 24789888775     2445665555554 1 2236666677764 5555 6778888775

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=94.48  E-value=0.046  Score=50.25  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=48.0

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC---CEEEEE-CCCCCCC-C---CCc-ccCCH-HHHhhcCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG---CSISYN-SRTKKPS-V---SYP-FYSNV-CELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g---~~V~~~-~~~~~~~-~---~~~-~~~~l-~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      ++|+|+| .|.+|+.+.+.|...+   .++... +++.... .   +.. ...++ .+.+.++|+|+.|+|.... ....
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~~~~DvV~~a~g~~~s-~~~a   85 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVS-RAHA   85 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHH-HHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHhcCCCEEEEcCCcHHH-HHHH
Confidence            5899999 8999999999998433   355443 4432211 0   100 01111 1236789999999984432 2111


Q ss_pred             hHHHHhcCCCCcEEEEcC
Q 022233          239 NKQVLSALGKEGVVINIG  256 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~s  256 (300)
                       ..   .++.|+.+|+.|
T Consensus        86 -~~---~~~aG~kvId~S   99 (340)
T 2hjs_A           86 -ER---ARAAGCSVIDLS   99 (340)
T ss_dssp             -HH---HHHTTCEEEETT
T ss_pred             -HH---HHHCCCEEEEeC
Confidence             12   234588888876

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.47  E-value=0.058  Score=48.88  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-------cccCCHHHHhhc--CCEEEE
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SY-------PFYSNVCELAAN--CDILII  226 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~-------~~~~~l~e~l~~--aDvV~l  226 (300)
                      +.+++|.|.| .|.||+.+++.|...|++|.+.+|+.....          ..       ....++.++++.  .|+|+.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence            6789999999 599999999999999999999888654321          11       111234566665  799888


Q ss_pred             ecC
Q 022233          227 CCG  229 (300)
Q Consensus       227 ~~p  229 (300)
                      +..
T Consensus        87 ~A~   89 (357)
T 1rkx_A           87 MAA   89 (357)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            765

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=94.41  E-value=0.056  Score=49.49  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|+..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            68999997 99999999999999999998887654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.41  E-value=0.1  Score=45.96  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=59.3

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC----------CC---------CcccCCHHHHhh------
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS----------VS---------YPFYSNVCELAA------  219 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~----------~~---------~~~~~~l~e~l~------  219 (300)
                      .+.||++.|.|. |.||+++|+.|...|++|.+.+++....          .+         .....+++++++      
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            588999999996 5799999999999999998775443110          01         111123334444      


Q ss_pred             -cCCEEEEecCCCh---------h-hhh----------cchHHHHhcCCCCcEEEEcCC
Q 022233          220 -NCDILIICCGLTA---------E-THH----------MINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       220 -~aDvV~l~~p~~~---------~-t~~----------li~~~~l~~mk~ga~lIn~sr  257 (300)
                       ..|+++.+.-...         + -+.          .+.+..+..|+++..+||++.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence             6899998754211         1 011          123445677888888999865

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.36  E-value=0.11  Score=43.99  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=43.2

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcccCCHHHHhh------cCCEEEEecC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPFYSNVCELAA------NCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~~~~l~e~l~------~aDvV~l~~p  229 (300)
                      +|++.|.|. |.||+.+|+.|...|++|++.+|+.....      ......+++++++      ..|+|+.+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            678999985 79999999999999999999888754111      1111234455555      6788887653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.35  E-value=0.026  Score=51.59  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHh----h--cCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELA----A--NCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l----~--~aDvV~l~~p~~  231 (300)
                      |.+|.|+|.|.||...++.++..|. +|+..+++++..     .++..     ..++.+.+    .  ..|+|+-++...
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~  246 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDV  246 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCCh
Confidence            7799999999999999999999999 799988765421     12211     12333322    1  489999887643


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +.     -...+..++++..++.++
T Consensus       247 ~~-----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          247 HT-----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHHhcCCEEEEec
Confidence            32     235566777787777665

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.35  E-value=0.052  Score=47.62  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.||++.|.|. |.||+.+|+.|...|++|...+|+.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   40 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67889999885 7899999999999999999888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	1e-29
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	1e-25
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	2e-25
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	6e-24
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	4e-23
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-15
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	2e-14
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	9e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	1e-13
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-13
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-12
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-12
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	3e-11
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	4e-11
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	5e-11
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-09
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-07
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	1e-06
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	1e-05
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	6e-05
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	3e-04
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	0.004

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  109 bits (272), Expect = 1e-29
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 119 SEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176
           +   A++A+ LL+   R     ++ ++   W        G      +G KL  K +GI G
Sbjct: 2   TVATAEIAMLLLLGSARRAGEGEKMIRTRSW-------PGWEPLELVGEKLDNKTLGIYG 54

Query: 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYP-----FYSNVCELAANCDILIICCGLT 231
            GSIG  +AKR   F   I Y    +  S         F+ ++  L +      +    T
Sbjct: 55  FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST 114

Query: 232 AETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPK 291
            ET +  NK  + +L +  +V+N  RG ++D + +V  L  G +  AG DVF  EP++ +
Sbjct: 115 PETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINE 174

Query: 292 EL 293
             
Sbjct: 175 GY 176

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.5 bits (244), Expect = 1e-25
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 119 SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLG 178
           +  VA+L +G L+ LLR +  ++    + +  + AA              GK++GI+G G
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEAR--------GKKLGIIGYG 53

Query: 179 SIGSLVAKRLDAFGCSISYNSRTK-KPSVSYPFYSNVCELAANCDILIICCGLTAETHHM 237
            IG+ +    ++ G  + +       P  +     ++ +L    D++ +       T +M
Sbjct: 54  HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNM 113

Query: 238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           +  + +S +    ++IN  RG ++D   L   L    + GA +DVF  EP    + 
Sbjct: 114 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 169

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 5/177 (2%)

Query: 120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
           E+ AD  +  +++L R  +   + +++  R  Q+ E         +++ G+ +GI+GLG 
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTR-VQSVEQIREVASGAARIRGETLGIIGLGR 59

Query: 180 IGSLVAKRLDAFGCSISYNSRT----KKPSVSYPFYSNVCELAANCDILIICCGLTAETH 235
           +G  VA R  AFG ++ +         + ++     S + +L  + D + + CGL    H
Sbjct: 60  VGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNH 119

Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
           H+IN   +  + +   ++N  RG ++DE+ L + L +G I+GA LDV E+EP    +
Sbjct: 120 HLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 176

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.9 bits (232), Expect = 6e-24
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 122 VADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIG 181
            A+ A+ LL+   R I A+D  +++    R +  G            GK VG+VGLG IG
Sbjct: 5   AAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--------GKTVGVVGLGRIG 56

Query: 182 SLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC---ELAANCDILIICCGLTAETHHMI 238
            LVA+R+ AFG  +        P+ +      +    +L A  D + +    T ET  +I
Sbjct: 57  QLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLI 116

Query: 239 NKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           +K+ L+      +++N  RG ++DE  L   +  G ++ AGLDVF  EP     L
Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPL 171

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 91.6 bits (226), Expect = 4e-23
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 122 VADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
           VA+  V +++ L+RN   S  + ++  W             +     L    VG V  G 
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIAD--------CVSHAYDLEAMHVGTVAAGR 54

Query: 180 IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC-----ELAANCDILIICCGLTAET 234
           IG  V +RL  F   + Y  R + P       +        ++   CD++ + C L  ET
Sbjct: 55  IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET 114

Query: 235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEP 287
            HMIN + L    +   ++N  RG + D   + R L  G + G   DV+  +P
Sbjct: 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP 167

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 68.5 bits (167), Expect = 3e-15
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 37/152 (24%)

Query: 41  FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVD 100
           F+     E  L    F       +  + ++  + +TAE L  MP ++ +   +AGL+H+ 
Sbjct: 7   FELPPEAEEELR-KYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLP 65

Query: 101 IAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYS 160
                     VA            +   ++++ +RN+                       
Sbjct: 66  WESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVRNL----------------------- 101

Query: 161 LGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFG 192
                            G     +AKR D  G
Sbjct: 102 ------------ITYATGGRPRNIAKREDYIG 121

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 68.7 bits (166), Expect = 2e-14
 Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 10/173 (5%)

Query: 122 VADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIG 181
           +A+ A      +LR   A D  V +                IG ++  + VG+VG G IG
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--------IGREVRDQVVGVVGTGHIG 55

Query: 182 SLVAKRLDAFGCSISYNSRTKKPSVSYP--FYSNVCELAANCDILIICCGLTAETHHMIN 239
            +  + ++ FG  +      + P +     +  ++ +L    D++ +         HMIN
Sbjct: 56  QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIN 115

Query: 240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
            + ++ + ++ V++N+ RGP++D   ++R L  G+I G  +DV+E E  +  E
Sbjct: 116 DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNE 168

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 66.3 bits (160), Expect = 9e-14
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGS 179
           + VA+ A+ LL+   + I      +K+    R                 G++V ++GLG 
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQ---------GEKVAVLGLGE 52

Query: 180 IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMIN 239
           IG+ V K L A G  +   SRT K        S    L       +    L   T  ++ 
Sbjct: 53  IGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALR-EARAAVCALPLNKHTRGLVK 111

Query: 240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKE 292
            Q L+ + ++ V +N+GR  ++D   ++R L +        DV+    D  K+
Sbjct: 112 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKD 164

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 18  RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTA 77
           +++ +    D   +  +                  LD+     A+  + I S    P  A
Sbjct: 2   KIIAYGARVDEIQYFKQWAKDTGNTL---EYHTEFLDENTVEWAKGFDGINSLQTTPYAA 58

Query: 78  ETLR--LMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
                     ++ +   + G +++D+   ++ GI ++N        V ++    L  L+ 
Sbjct: 59  GVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVD 118

Query: 136 NISASDRFVK 145
            ++  +   +
Sbjct: 119 FLTKGETSTE 128

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 66.0 bits (159), Expect = 2e-13
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 119 SEDVADLAVGLLIDLLRNISASDRFVKQ--WLRPRQAAEGDCYSLGIGSKLGGKRVGIVG 176
              +A+ A+   + LLRN+      ++   + +             IG +LG + VG++G
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT---------FIGKELGQQTVGVMG 52

Query: 177 LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFY-SNVCELAANCDILIICCGLTAETH 235
            G IG +  K    FG  +              F   ++ +L    D++ +      +  
Sbjct: 53  TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNT 112

Query: 236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVPKEL 293
           H+IN+   + +    +VIN  R  +ID Q ++  L  G++ G G+D +E E +    L
Sbjct: 113 HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 170

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 61.6 bits (149), Expect = 1e-12
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVT 76
            ++L+  P P+  +        +        +  + +D+ +   A+SV+A+L +      
Sbjct: 2   KKILITWPLPEAAM---ARARESYDVIAHGDDPKITIDE-MIETAKSVDALLITLNEKCR 57

Query: 77  AETLRLMPA-VRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
            E +  +P  ++ + T S G +H+D+  C+ RGI V NA +  ++   D+A      +  
Sbjct: 58  KEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA 117

Query: 136 NISASDR 142
               +D 
Sbjct: 118 LFGGADM 124

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 18  RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTA 77
           ++  +    D   F  E       K ++   +   L       A+  + ++        A
Sbjct: 2   KIFAYAIREDEKPFLKEWED--AHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 78  ETLRLMPAVRLVM--TTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR 135
           ETL+ +    +      + G++++D+A+ +  G  + N            AV  ++    
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAF 116

Query: 136 NISASDRFVKQWLRP 150
           + +      K+   P
Sbjct: 117 DNNLELVEGKEAETP 131

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 58.8 bits (142), Expect = 3e-11
 Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 32/162 (19%)

Query: 15  DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLK---------------- 58
           DLP++  +  P    L   +       + L +    L L ++L+                
Sbjct: 23  DLPKIDHY--PGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPD 80

Query: 59  ----THAQSVEAILSS--GGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVA 112
                     + ++S     A +T E +     ++L +T   G +HVD+     R +TVA
Sbjct: 81  SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVA 140

Query: 113 NAGNVFSEDVADLAVG--------LLIDLLRNISASDRFVKQ 146
                 S  +   A                R I      V+ 
Sbjct: 141 EVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQG 182

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 54  DQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVAN 113
            +  +         L      +T E L    A+R+++   +G +++DI      GI V N
Sbjct: 34  QEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCN 93

Query: 114 AGNVFSEDVADLAVGLLIDLLRNISAS 140
                S      ++ +  +  R I  +
Sbjct: 94  VPAA-SVYSEQASIEMREEAAREIRRA 119

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.1 bits (137), Expect = 5e-11
 Identities = 23/90 (25%), Positives = 36/90 (40%)

Query: 57  LKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGN 116
           L       +A+L      V AE L   P +++V     GL++VD+     RG+ V NA  
Sbjct: 36  LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPT 95

Query: 117 VFSEDVADLAVGLLIDLLRNISASDRFVKQ 146
             S   A    G  +     ++ +  FV  
Sbjct: 96  SASTAEAQDRAGTDVAESVRLALAGEFVPD 125

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 17  PRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVT 76
            + LL +     H    E   +  +  ++  +  L  +Q LK   +    I       +T
Sbjct: 5   IKFLLVEG---VHQKALESLRAAGYTNIEFHKGALDDEQ-LKESIRDAHFIGLRSRTHLT 60

Query: 77  AETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRN 136
            + +     +  +   + G N VD+    +RGI V NA    +++  +  +GL +   + 
Sbjct: 61  EDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE-NIGLEV-AGKL 118

Query: 137 ISASDR 142
           I  SD 
Sbjct: 119 IKYSDN 124

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILII 226
           + GK   + G G +G   A+ L  FG  +         ++         E+    +    
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ--AAMEGYEVTTMDEACQE 79

Query: 227 C--CGLTAETHHMINKQVLSALGKEGVVINIG-RGPIIDEQELVRCLVQGEIKGAGLDVF 283
                 T     +I  +    +  + +V NIG     ID + L    V+       +D +
Sbjct: 80  GNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY 139

Query: 284 E 284
            
Sbjct: 140 R 140

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS----VSYPFYSNVCELAANC 221
           +L  +   IVG G +    A+ L   G  ++ N+ T  P      +    + V       
Sbjct: 9   QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68

Query: 222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQEL 266
            +      + A     +N++V  A     +  N     ++D  + 
Sbjct: 69  LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCN-----VVDAPKA 108

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGL 230
            V I+G+G+IG  + +  +                   P    + E     D+  +    
Sbjct: 4   TVLIIGMGNIGKKLVELGNFEKIYAYDRISKD-----IPGVVRLDEFQVPSDVSTVVECA 58

Query: 231 TAETHHMINKQVLSALGKEGVVINIG 256
           + E     + Q+L       ++I+  
Sbjct: 59  SPEAVKEYSLQILKN-PVNYIIISTS 83

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSYPFYSNVCELAANCDILI 225
           +VG +GLG +G  ++K L   G S+  + R  +      +      S    +A  CD++I
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 226 ICCGLTAETHHMINKQVLSALGKEGVVINIGRGPII 261
                +     +        LG+ G++     G ++
Sbjct: 62  TMLPNSPHVKEVA-------LGENGIIEGAKPGTVL 90

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 10/110 (9%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK-----------PSVSYPFYSNVCELA 218
           K+  ++GLG  G  + K L   G  +      ++             ++     N     
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 219 ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVR 268
              +   +   +    +   +      L +  +     +       +++ 
Sbjct: 61  GIRNFEYVIVAIG--ANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE 108

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC-----ELAA 219
           S + GK+V I+G GS G   A  L   G  ++   R+   +V+      +         A
Sbjct: 12  SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVA 71

Query: 220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRG 258
             D+++I          +  +++   L K+G  +    G
Sbjct: 72  AADVVMILT-PDEFQGRLYKEEIEPNL-KKGATLAFAHG 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.95
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.91
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.89
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.87
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.86
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.86
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.81
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.59
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.4
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.29
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.26
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.26
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.21
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.11
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.09
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.03
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.94
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.78
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.76
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.58
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.58
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.56
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.5
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.46
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.45
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.4
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.37
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.35
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.33
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.22
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.2
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.1
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.09
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.03
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.01
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.93
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.88
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.83
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.75
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.72
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.66
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.65
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.6
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.54
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.52
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.51
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.48
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.41
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.4
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.35
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.33
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.33
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.3
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.3
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.25
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.22
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.22
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.2
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.18
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.17
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.16
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.15
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.11
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.07
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.04
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.03
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.97
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.94
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.89
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.87
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.81
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.71
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.7
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.69
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.64
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.62
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.6
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.58
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.57
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.5
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.45
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.42
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.34
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.33
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.31
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.29
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.26
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.24
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.15
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.13
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.12
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.98
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.95
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.9
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.89
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.74
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.72
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.7
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.69
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.69
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.65
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.61
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.59
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.58
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.56
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.53
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.53
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.52
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.51
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.51
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.49
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.47
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.43
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.38
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.36
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.34
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.32
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.31
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.3
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.29
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.29
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.22
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.1
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.09
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.08
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.04
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.98
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.98
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.98
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.91
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.88
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.84
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.83
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.78
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.78
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.78
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.7
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.67
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.67
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.66
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.65
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.6
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.58
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.55
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.5
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.47
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.38
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.32
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.27
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.21
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.17
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.15
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.15
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.14
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.14
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.13
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.1
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.08
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.95
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.94
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.84
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.82
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.77
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.76
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.7
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.68
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.65
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	93.61
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.56
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.55
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.31
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.31
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.24
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.24
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.17
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.11
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.1
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.01
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.01
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.99
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.99
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.88
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.83
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.83
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.77
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.65
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.61
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.46
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.44
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.35
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.25
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.21
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.06
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.87
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.62
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.5
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.43
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.4
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.11
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.09
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.02
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.98
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.92
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.81
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.76
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.71
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.61
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	90.53
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.51
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.49
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.31
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.25
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.2
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.17
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	90.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.01
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.93
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.89
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.53
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.51
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.31
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.24
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.03
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.97
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.7
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.53
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.5
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	88.48
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.35
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.35
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.32
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.24
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.8
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.58
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.5
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.36
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	87.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.25
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.97
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.59
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.59
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.54
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.23
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.21
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.04
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.04
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.98
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.67
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.65
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.31
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	85.11
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	85.11
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	85.02
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.93
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	84.93
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	84.58
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.45
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	84.22
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	84.21
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.06
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.66
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	83.44
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.04
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	82.71
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.66
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.59
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.49
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	82.23
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	81.74
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.29
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	81.1
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.08
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.01
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	80.83
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	80.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	80.29

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-48  Score=333.47  Aligned_cols=175  Identities=30%  Similarity=0.453  Sum_probs=160.0

Q ss_pred             CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEE
Q 022233          118 FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY  197 (300)
Q Consensus       118 ~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~  197 (300)
                      |+.+||||++++||++.|+++.+++.++++.|.+   . .+  .  +.++.|+++||+|+|.||+.+|+++++|||+|.+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~-~~--~--~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~   72 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---S-SF--S--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA   72 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---G-GC--C--BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---c-cc--c--cccccceeeeeccccchhHHHHHHhhhccceEEe
Confidence            5789999999999999999999999999999972   1 12  2  7789999999999999999999999999999999


Q ss_pred             ECCCCCCCC---CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          198 NSRTKKPSV---SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       198 ~~~~~~~~~---~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      |+++..+..   ......+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+
T Consensus        73 ~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~  152 (184)
T d1ygya1          73 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGH  152 (184)
T ss_dssp             ECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS
T ss_pred             ecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCc
Confidence            998765422   11235689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          275 IKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       275 i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      |+||+||||++||++++|||++|||+
T Consensus       153 i~~a~lDV~~~EP~~~~~l~~~~nvi  178 (184)
T d1ygya1         153 VRAAGLDVFATEPCTDSPLFELAQVV  178 (184)
T ss_dssp             EEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             EeEEEEeCCCCCCCCCchHhcCCCEE
Confidence            99999999999999878999999984

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=2e-47  Score=327.93  Aligned_cols=177  Identities=27%  Similarity=0.449  Sum_probs=159.8

Q ss_pred             chhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE
Q 022233          119 SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN  198 (300)
Q Consensus       119 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~  198 (300)
                      +.+|||++++|||++.|+++++++.+|+|.|...... .  ..  |.+++|+++||||+|+||+.+|+++++|||+|.+|
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~-~--~~--~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~   76 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPL-E--LV--GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYF   76 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTT-T--TC--BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCcc-c--cc--cceecccceEEeecccchHHHHHHHHhhccccccc
Confidence            5689999999999999999999999999999732111 1  12  78999999999999999999999999999999999


Q ss_pred             CCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          199 SRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       199 ~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ++......     ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++|||+||+++|++|
T Consensus        77 d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g  156 (191)
T d1gdha1          77 DTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG  156 (191)
T ss_dssp             CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             cccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcC
Confidence            98765321     2344678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeCCCCCCCCCCCCCCCCCCC
Q 022233          274 EIKGAGLDVFENEPDVPKELXXXXXXX  300 (300)
Q Consensus       274 ~i~~a~LDV~~~EP~~~~~L~~~~nv~  300 (300)
                      +|.+|+||||++||.+++|||++|||+
T Consensus       157 ~i~~a~lDV~~~EP~~~~~l~~~~nvi  183 (191)
T d1gdha1         157 RLAYAGFDVFAGEPNINEGYYDLPNTF  183 (191)
T ss_dssp             SEEEEEESCCTTTTSCCTTGGGCTTEE
T ss_pred             CceEEEEECCCCCCCCCchHHcCCCEE
Confidence            999999999999997778999999974

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1e-46  Score=323.92  Aligned_cols=178  Identities=28%  Similarity=0.473  Sum_probs=158.8

Q ss_pred             hhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccC--CCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEE
Q 022233          120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAE--GDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY  197 (300)
Q Consensus       120 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~--~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~  197 (300)
                      ++|||+++++||++.|+++.+++.+++|.|.+....  ... ..  |.+|+|+||||||+|+||+.+|+++++|||+|.+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~-~~--~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~   77 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA-SG--AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF   77 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHT-TT--CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccc-cC--ceeeeCceEEEeccccccccceeeeeccccceee
Confidence            589999999999999999999999999999732100  001 12  7889999999999999999999999999999999


Q ss_pred             ECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          198 NSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       198 ~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      |++......    +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  157 (193)
T d1mx3a1          78 YDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  157 (193)
T ss_dssp             ECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             ccCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence            998765432    3445678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeCCCCCCCCC--CCCCCCCCCC
Q 022233          274 EIKGAGLDVFENEPDVP--KELXXXXXXX  300 (300)
Q Consensus       274 ~i~~a~LDV~~~EP~~~--~~L~~~~nv~  300 (300)
                      +|.||+||||++||++.  +|||++|||+
T Consensus       158 ~i~~a~lDV~~~EP~~~~~~~l~~~~nvi  186 (193)
T d1mx3a1         158 RIRGAALDVHESEPFSFSQGPLKDAPNLI  186 (193)
T ss_dssp             SEEEEEESCCSSSSCCTTSSTTTTCSSEE
T ss_pred             CceEEEEEcCCCCCCCCCchhHHcCCCEE
Confidence            99999999999999863  4899999984

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.1e-45  Score=316.48  Aligned_cols=174  Identities=25%  Similarity=0.428  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECC
Q 022233          121 DVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSR  200 (300)
Q Consensus       121 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~  200 (300)
                      +||||+++++|++.|++..++..+++|.|....   .. ..  +.+|.|++|||||+|+||+.+|++|++|||+|.+|++
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~---~~-~~--~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~   75 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD---CV-SH--AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR   75 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH---HH-TT--CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECS
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc---cC-Cc--ceeccccceeeccccccchhhhhhhhccCceEEEEee
Confidence            799999999999999999999999999997321   01 12  6789999999999999999999999999999999998


Q ss_pred             CCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          201 TKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       201 ~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ...+..     +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i  155 (188)
T d2naca1          76 HRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL  155 (188)
T ss_dssp             SCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred             ccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc
Confidence            754321     345567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeCCCCCCCCC-CCCCCCCCCC
Q 022233          276 KGAGLDVFENEPDVP-KELXXXXXXX  300 (300)
Q Consensus       276 ~~a~LDV~~~EP~~~-~~L~~~~nv~  300 (300)
                      .||+||||++||++. +|||++|||+
T Consensus       156 ~ga~lDV~~~EP~~~~~~l~~~~nv~  181 (188)
T d2naca1         156 AGYAGDVWFPQPAPKDHPWRTMPYNG  181 (188)
T ss_dssp             EEEEESCCSSSSCCTTCGGGTSTTBC
T ss_pred             eeEEEeCCCCCCCCCCChHHcCCCeE
Confidence            999999999999875 4899999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-45  Score=311.75  Aligned_cols=175  Identities=22%  Similarity=0.384  Sum_probs=151.3

Q ss_pred             CchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEE
Q 022233          118 FSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISY  197 (300)
Q Consensus       118 ~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~  197 (300)
                      |+++||||+++++|++.|+++.++..+++|.|.+.   .   ..  +.++.|++|||||+|.||+.+|+++++|||+|.+
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~---~---~~--~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~   72 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---A---AG--SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF   72 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc---c---cc--cccccceEEEEeecccchhhhhhhcccccceEee
Confidence            67899999999999999999999999999999821   1   22  6789999999999999999999999999999999


Q ss_pred             ECCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          198 NSRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       198 ~~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      |++...... ......+++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|+++++.
T Consensus        73 ~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~  152 (188)
T d1sc6a1          73 YDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA  152 (188)
T ss_dssp             ECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             ccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence            998765433 3344578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCC-----CCCCCCCCCC
Q 022233          277 GAGLDVFENEPDVP-----KELXXXXXXX  300 (300)
Q Consensus       277 ~a~LDV~~~EP~~~-----~~L~~~~nv~  300 (300)
                      +|+||||++||...     .|||++|||+
T Consensus       153 ~a~lDV~~~EP~~~~~~~~~~l~~~~nv~  181 (188)
T d1sc6a1         153 GAAIDVFPTEPATNSDPFTSPLAEFDNVL  181 (188)
T ss_dssp             EEEEEC---------CTTTGGGTTCTTEE
T ss_pred             EEEEecCCCCCCCcCCccchhHhcCCCEE
Confidence            99999999999742     3799999984

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=8.2e-46  Score=319.92  Aligned_cols=175  Identities=24%  Similarity=0.405  Sum_probs=157.0

Q ss_pred             chhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE
Q 022233          119 SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN  198 (300)
Q Consensus       119 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~  198 (300)
                      .++||||++++||++.|++..+++.+++|.|.+   ...+  .  |++|.|+||||||+|+||+.+|++|++|||+|++|
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~---~~~~--~--~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~   74 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEK---AGTF--I--GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAY   74 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHH---HTCC--C--CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCc---ccCc--c--cccccceeeeeeecccccccccccccccceeeecc
Confidence            478999999999999999999999999999972   2222  2  78999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          199 SRTKKPSV-SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       199 ~~~~~~~~-~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      |++..... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.|
T Consensus        75 d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~g  154 (199)
T d1dxya1          75 DPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG  154 (199)
T ss_dssp             CSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEE
T ss_pred             CCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcce
Confidence            98765432 22345689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCC------------C--CCCCCCCCCC
Q 022233          278 AGLDVFENEPDV------------P--KELXXXXXXX  300 (300)
Q Consensus       278 a~LDV~~~EP~~------------~--~~L~~~~nv~  300 (300)
                      |+||||++||++            |  ++||++|||+
T Consensus       155 a~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nvi  191 (199)
T d1dxya1         155 VGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVV  191 (199)
T ss_dssp             EEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEE
T ss_pred             EeccccCCCCcchhhccccccccChhhHHHhcCCCEE
Confidence            999999999952            1  3588999984

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=2.3e-45  Score=316.25  Aligned_cols=173  Identities=23%  Similarity=0.413  Sum_probs=154.6

Q ss_pred             hhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEEC
Q 022233          120 EDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNS  199 (300)
Q Consensus       120 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~  199 (300)
                      ++||||+++++|+++|+++.+++.+++|+|.+   ..   ..  |++|.|+||||||+|+||+.+|+++++|||+|.+||
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w---~~---~~--g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d   73 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRW---AP---TI--GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD   73 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCC---TT---CC--BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCc---CC---Cc--CccccCCeEEEecccccchhHHHhHhhhcccccccC
Confidence            68999999999999999999999999998872   21   22  889999999999999999999999999999999999


Q ss_pred             CCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          200 RTKKPSV--SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       200 ~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      +...+..  ......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+
T Consensus        74 ~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~  153 (197)
T d1j4aa1          74 IFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG  153 (197)
T ss_dssp             SSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred             cccccccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchh
Confidence            8765321  22345789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCC--------------CCCCCCCCCC
Q 022233          278 AGLDVFENEPDVP--------------KELXXXXXXX  300 (300)
Q Consensus       278 a~LDV~~~EP~~~--------------~~L~~~~nv~  300 (300)
                      |+||||++||...              ++||++|||+
T Consensus       154 a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nvi  190 (197)
T d1j4aa1         154 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL  190 (197)
T ss_dssp             EEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEE
T ss_pred             eeeeccccCCcccccccccccCCccchhhhhcCCCEE
Confidence            9999999997432              1478888874

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.5e-44  Score=307.36  Aligned_cols=172  Identities=24%  Similarity=0.348  Sum_probs=155.1

Q ss_pred             chhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEE
Q 022233          119 SEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYN  198 (300)
Q Consensus       119 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~  198 (300)
                      +++||||+++++|++.|++..+.+.+++|+|.+   .  . .   ..+|.|++|||||+|.||+.+|+++++|||+|.+|
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~---~--~-~---~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~   71 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR---D--V-E---IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGF   71 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C--S-C---CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC---C--C-C---CCcccCceEEEeccccccccceeeeeccccccccc
Confidence            578999999999999999999999999999972   2  1 1   34699999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 022233          199 SRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGA  278 (300)
Q Consensus       199 ~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a  278 (300)
                      ++++.... .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|+++++.+|
T Consensus        72 d~~~~~~~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~a  150 (181)
T d1qp8a1          72 SRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIF  150 (181)
T ss_dssp             CSSCCCSS-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEE
T ss_pred             cccccccc-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEE
Confidence            99865432 33457899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCC-C-CCCCCCCCCC
Q 022233          279 GLDVFENEPDV-P-KELXXXXXXX  300 (300)
Q Consensus       279 ~LDV~~~EP~~-~-~~L~~~~nv~  300 (300)
                      ++|||++||+. . +||+++|||+
T Consensus       151 alDV~~~e~p~~~~~~l~~~~nvi  174 (181)
T d1qp8a1         151 ASDVWWGRNDFAKDAEFFSLPNVV  174 (181)
T ss_dssp             EESCCTTTTCCGGGHHHHTSTTEE
T ss_pred             EEecCCCCCCCCCCChHHcCCCEE
Confidence            99999877643 3 3899999984

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=3.1e-28  Score=195.52  Aligned_cols=129  Identities=22%  Similarity=0.266  Sum_probs=111.6

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSA   94 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~   94 (300)
                      .+||||+++++  ++...+.  |++.|++... . ..+.+++. +.++++|++++++.+++++++++++|+||+|++.|+
T Consensus         1 sMpkvli~~~~--~~~~~~~--L~~~~~v~~~-~-~~~~~el~-~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~   73 (130)
T d1ygya2           1 SLPVVLIADKL--APSTVAA--LGDQVEVRWV-D-GPDRDKLL-AAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGV   73 (130)
T ss_dssp             CCCEEEECSSC--CGGGGTT--SCSSSEEEEC-C-TTSHHHHH-HHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSS
T ss_pred             CCCEEEEECCC--CHHHHHH--HhCCcEEEEC-C-CCCHHHHH-HHcCCCEEEEEcCcccchHHHHhhcccceEEeeecc
Confidence            36999999987  5777777  9999987653 2 23345544 456899999998888999999999999999999999


Q ss_pred             CCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCC
Q 022233           95 GLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRP  150 (300)
Q Consensus        95 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~  150 (300)
                      ||||||+++|+++||.|+|+|++++.+|||+++++||++.|++..+++.+|+|.|.
T Consensus        74 G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          74 GLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             cccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            99999999999999999999999999999999999999999998887777777664

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.91  E-value=1.3e-24  Score=173.97  Aligned_cols=115  Identities=22%  Similarity=0.344  Sum_probs=96.2

Q ss_pred             CCeEEEECCCCCCccccchhhhcccCeEEEecCCC-CChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC-CcceEEEcC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESP-LPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP-AVRLVMTTS   93 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p-~Lk~I~~~~   93 (300)
                      |||||+++++  +++..+.  +++.|+++.+.... .+.+++ .+.++++|+|++++..++++++++++| +||+|++.|
T Consensus         1 K~kVlit~~~--~~~~~~~--l~~~~~v~~~~~~~~~s~~el-~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~g   75 (129)
T d1gdha2           1 KKKILITWPL--PEAAMAR--ARESYDVIAHGDDPKITIDEM-IETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYS   75 (129)
T ss_dssp             CCEEEESSCC--CHHHHHH--HHTTSEEEECCSTTCCCHHHH-HHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEES
T ss_pred             CCEEEEeCCC--CHHHHHH--HHcCCcEEEeCCCCCCCHHHH-HHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecc
Confidence            8999999987  6777777  99999976644322 344554 455689999998888899999999997 799999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhh
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLR  135 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R  135 (300)
                      +|+||||+++|+++||+|+|+||+++++|||+++++|+.+.+
T Consensus        76 vG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          76 IGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999977665555444

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6e-24  Score=170.53  Aligned_cols=121  Identities=17%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             CCCeEEEECCCCCCccccchhhhcccCe-EEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcC
Q 022233           15 DLPRVLLFKPPPDFHLFGDECFSSNKFK-FLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTS   93 (300)
Q Consensus        15 ~kp~vl~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~   93 (300)
                      .|+|||+++++  .+...+.  |++.+. ++.......+. +.+.+.++++|++++++..++++++|+++|+||+|+++|
T Consensus         3 ~kmKILv~d~i--~~~a~~~--L~~~g~~~v~~~~~~~~~-~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~g   77 (132)
T d1sc6a2           3 DKIKFLLVEGV--HQKALES--LRAAGYTNIEFHKGALDD-EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (132)
T ss_dssp             SSCCEEECSCC--CHHHHHH--HHHTTCCCEEECSSCCCH-HHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCCEEEEECCC--CHHHHHH--HHhCCCEEEEeCCCCCCH-HHHHHhhcCCcEEEEecccccChhhhhccccceeEEEec
Confidence            46799999987  6777766  877743 34433333344 445566789999998888899999999999999999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHH
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDR  142 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~  142 (300)
                      +||||||+++|+++||+|+|+|++++.+|||++++||+  .|++..++.
T Consensus        78 vG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          78 IGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             ccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            99999999999999999999999999999998766554  444444433

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.87  E-value=1.2e-24  Score=172.06  Aligned_cols=120  Identities=24%  Similarity=0.261  Sum_probs=103.1

Q ss_pred             eEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCCCC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAGLN   97 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G~d   97 (300)
                      ||+++.++  +++..+.  +++.|+++...  +          .+++|+++++   +++++.++++|+||||++.|+|+|
T Consensus         2 ki~v~~~l--p~e~~e~--L~~~~~v~~~~--d----------~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D   62 (121)
T d1qp8a2           2 ELYVNFEL--PPEAEEE--LRKYFKIVRGG--D----------LGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLD   62 (121)
T ss_dssp             EEECCSCC--CHHHHHH--HHTTCEEECSS--C----------CTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCT
T ss_pred             EEEEeCCC--CHHHHHH--hhhcceEeecc--c----------ccccceeeee---ccCHHHHhcCCCceEEEecccCcC
Confidence            78888887  5777777  88889876411  1          2568887764   799999999999999999999999


Q ss_pred             CCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCCCcccCCCccccCcccccCCCEEEEEec
Q 022233           98 HVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRPRQAAEGDCYSLGIGSKLGGKRVGIVGL  177 (300)
Q Consensus        98 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~g~~l~g~~vgIiG~  177 (300)
                      |+|++.++ +||.|+|++|+++.+||||+++++|++.|+                                   ++|+|+
T Consensus        63 ~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~-----------------------------------l~i~G~  106 (121)
T d1qp8a2          63 HLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN-----------------------------------LITYAT  106 (121)
T ss_dssp             TSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH-----------------------------------HHHHHT
T ss_pred             CCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC-----------------------------------EEEEcC
Confidence            99999985 699999999999999999999999998763                                   358999


Q ss_pred             ChhHHHHHHHHHhCC
Q 022233          178 GSIGSLVAKRLDAFG  192 (300)
Q Consensus       178 G~IG~~~A~~l~~~g  192 (300)
                      |.||+.+|+++++||
T Consensus       107 G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         107 GGRPRNIAKREDYIG  121 (121)
T ss_dssp             TSCCSCBCCGGGTC-
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999999987

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.86  E-value=5.5e-23  Score=164.77  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             eEEEECCCCCCccccchhhhccc--CeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC--CcceEEEcC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNK--FKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTS   93 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p--~Lk~I~~~~   93 (300)
                      ||++.+..+...++.++  +.+.  +++.. ..... .++. .+.++++|+|++++..++++++|+++|  +||+|++.|
T Consensus         2 KIl~~~~~~~e~~~l~~--~~~~~~~~v~~-~~~~~-~~~~-~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~   76 (131)
T d1dxya2           2 KIIAYGARVDEIQYFKQ--WAKDTGNTLEY-HTEFL-DENT-VEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRN   76 (131)
T ss_dssp             EEEECSCCTTTHHHHHH--HHHHHCCEEEE-CSSCC-CTTG-GGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESS
T ss_pred             EEEEEecCcCcHHHHHH--HHHHcCeEEEE-cCCCC-CHHH-HHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcc
Confidence            68887654323444434  4443  44433 32221 1232 334589999998888899999999876  899999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHH
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISAS  140 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~  140 (300)
                      +|+||||+++|+++||+|+|+|++++++|||++++++|++.|++..+
T Consensus        77 vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          77 VGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            99999999999999999999999999999999999999999998655

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.86  E-value=5.6e-22  Score=158.82  Aligned_cols=125  Identities=15%  Similarity=0.160  Sum_probs=97.8

Q ss_pred             CCeEEEECCCCCCccccchhhhcccCeEEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCCCcceEEEcCCC
Q 022233           16 LPRVLLFKPPPDFHLFGDECFSSNKFKFLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMPAVRLVMTTSAG   95 (300)
Q Consensus        16 kp~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p~Lk~I~~~~~G   95 (300)
                      .|+|++++....   ..+.+.|++..++.. .+.. ..+++.++.+++++++++++..++++++++++|+||+|+++|+|
T Consensus         1 mP~v~~ld~~d~---~~e~~~L~~~~~v~~-~~~~-s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G   75 (133)
T d1mx3a2           1 MPLVALLDGRDC---TVEMPILKDVATVAF-CDAQ-STQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   75 (133)
T ss_dssp             CCEEEESSCSCC---TTTHHHHTTTCEEEE-CCCS-SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCEEEEecCCcc---hhhHHHhcccceEEE-ecCC-ChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCC
Confidence            488999876521   112223777777654 3222 22333334445688888888889999999999999999999999


Q ss_pred             CCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhCCCC
Q 022233           96 LNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISASDRFVKQWLRP  150 (300)
Q Consensus        96 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~w~  150 (300)
                      +||||+++|+++||.|+|+|+++. ++|||+++|+|++.|+++++    -+|.|.
T Consensus        76 ~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a----~~g~~~  125 (133)
T d1mx3a2          76 FDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA----ITGRIP  125 (133)
T ss_dssp             CTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH----HHSCTT
T ss_pred             cccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH----Hhcccc
Confidence            999999999999999999999987 57999999999999999877    456665

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.83  E-value=7.5e-22  Score=164.42  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             hhhccc-CeEEEecCCCCChHHHHHhccCCcEEEEEeC--CCCCCHHHHccCCCcceEEEcCCCCCCCChhHHhhCCeEE
Q 022233           35 CFSSNK-FKFLKAWESPLPLDQFLKTHAQSVEAILSSG--GAPVTAETLRLMPAVRLVMTTSAGLNHVDIAECRRRGITV  111 (300)
Q Consensus        35 ~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~~~~e~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v  111 (300)
                      ++|+++ ++++...+.+.+ .+.+.+.+.++|+++++.  ..++++|+|+++|+||+|+++|+|+||||+++|+++||.|
T Consensus        61 ~~Le~~GhelV~~sd~~~~-~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V  139 (186)
T d2naca2          61 KYLESNGHTLVVTSDKDGP-DSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTV  139 (186)
T ss_dssp             HHHHHTTCEEEEESCCSST-TSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             HHHHHCCCEEEEecCCCCC-hHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEE
Confidence            346666 455554443333 334555668999999864  5789999999999999999999999999999999999999


Q ss_pred             EeCCCCCchhHHHHH--------HHHHHHHhhchHHHHHHHHhCCC
Q 022233          112 ANAGNVFSEDVADLA--------VGLLIDLLRNISASDRFVKQWLR  149 (300)
Q Consensus       112 ~n~p~~~~~~vAE~~--------l~l~L~~~R~~~~~~~~~~~g~w  149 (300)
                      +|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       140 ~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         140 AEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999        77888888888877777777766

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.81  E-value=3.5e-21  Score=154.68  Aligned_cols=116  Identities=14%  Similarity=0.173  Sum_probs=87.3

Q ss_pred             eEEEECCCCCCccccchhhhcccCe--EEEecCCCCChHHHHHhccCCcEEEEEeCCCCCCHHHHccCC--CcceEEEcC
Q 022233           18 RVLLFKPPPDFHLFGDECFSSNKFK--FLKAWESPLPLDQFLKTHAQSVEAILSSGGAPVTAETLRLMP--AVRLVMTTS   93 (300)
Q Consensus        18 ~vl~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~~~~e~l~~~p--~Lk~I~~~~   93 (300)
                      ||++.+......++.++ ++.+.++  +.. .+... .++. .+.++++|+|++++..++++++++++|  +||+|++.|
T Consensus         2 KI~~f~~~~~e~~~~e~-~~~~~~~v~v~~-~~~~~-~~e~-~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~   77 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKE-WEDAHKDVEVEY-TDKLL-TPET-VALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRN   77 (134)
T ss_dssp             EEEECSCCGGGHHHHHH-HHHTCTTSEEEE-CSSCC-CTTT-GGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESS
T ss_pred             eEEEEecccccHHHHHH-HHHhCCCEEEEE-CCCCC-CHHH-HHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEcc
Confidence            78887665323333333 2344444  332 22222 2333 355689999999888999999999765  799999999


Q ss_pred             CCCCCCChhHHhhCCeEEEeCCCCCchhHHHHHHHHHHHHhhchHHH
Q 022233           94 AGLNHVDIAECRRRGITVANAGNVFSEDVADLAVGLLIDLLRNISAS  140 (300)
Q Consensus        94 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~l~l~L~~~R~~~~~  140 (300)
                      +||||||+++|+++||.|+|+|++   ++||+++++||++.|++...
T Consensus        78 vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~~  121 (134)
T d1j4aa2          78 VGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLE  121 (134)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHHH
T ss_pred             CCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999987   58999999999999986443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=7.1e-16  Score=126.71  Aligned_cols=107  Identities=19%  Similarity=0.306  Sum_probs=95.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||+.||++|...|++|.+|||+++..     .+.....+..|++++||+|++++|..++++.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            589999999999999999999999999999987642     2445567899999999999999999999888773  357


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +..+++|.++||+++..+-....+.+.+++.++.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  114 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8889999999999999999999999999998874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-16  Score=127.82  Aligned_cols=117  Identities=18%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcch
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      +..|.||+++|+|||.||+.+|++++++|++|+++++.+....    ......++++++..+|+++++.    .++++|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~   94 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIIL   94 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBC
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchh
Confidence            3458999999999999999999999999999999999764421    1223468999999999998875    3578899


Q ss_pred             HHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          240 KQVLSALGKEGVVINIG-RGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~s-rg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      .+.|+.||+|+++.|++ +..-+|.++|.+...+.+.....+|.|+
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            99999999999999986 6777999999886544444445566554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=2e-14  Score=118.04  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcch--HHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMIN--KQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~--~~~  242 (300)
                      ++|||||+|.||.+||++|...|++|.+|||+++..     .+.....++.|++..+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999986542     2444567899999999999999999988887663  347


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      +..+++|.++||++...+-+...+.+.+++.++.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998874  3564

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.40  E-value=1.9e-13  Score=113.53  Aligned_cols=107  Identities=14%  Similarity=0.182  Sum_probs=90.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------CCcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------SYPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      -++|||||+|.||.+||++|...|++|++|||++++..             ++....++.+.+..+|++++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            35899999999999999999999999999999875311             12223456677889999999999998888


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      .++ ..++..+++|.++||++...+-+...+.+.+.+..+.
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~  121 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc
Confidence            765 5788899999999999999999999999999998774

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.29  E-value=3.6e-12  Score=103.58  Aligned_cols=98  Identities=24%  Similarity=0.336  Sum_probs=82.9

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+.||++.|+|||.+|+.+|++++++|++|++++..|-..     .+++ ..+++|+++.+|+++.++..    .++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~-v~~~~~a~~~aDi~vTaTGn----~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTGN----VDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCSS----SSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCc-cCchhHccccCcEEEEcCCC----CccccH
Confidence            4899999999999999999999999999999998876432     2443 47899999999999999764    347899


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 022233          241 QVLSALGKEGVVINIGRGPI-IDEQELVR  268 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~srg~~-vd~~aL~~  268 (300)
                      +.|..||+|+++.|++.-.. +|-++|.+
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99999999999999998765 56666653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=3.5e-12  Score=103.12  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=79.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLS  244 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~  244 (300)
                      ++|||||+|+||+.+|++|+..|++|.++++.+.+..     +.....+++|++++||+|++++|.....+ .+ .....
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            5899999999999999999999999999987665421     22335688999999999999999765544 22 23333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          245 ALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       245 ~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      .  .+.++||++.......+.+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            3  367899999999988899998887654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.26  E-value=2.3e-12  Score=105.44  Aligned_cols=104  Identities=19%  Similarity=0.265  Sum_probs=77.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-cccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSY-PFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~-~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|||||+|.||+++|+.|+..|++|++|||+++..     .+. ....+..+.+++||+|++++|.. .++.++ .++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence            589999999999999999999999999999975421     121 22334557889999999999954 566666 5678


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ..++++.+++|++......... ...+...-+.
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~  110 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIG  110 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEE
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhccccc
Confidence            8899999999998765443333 3444444343

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=5.5e-12  Score=102.45  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=85.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      +|||||+|+||..||++|...|..+ +|+++..+..    ......+..+.+.++|++++++|..+++.... ...++.+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            7999999999999999999888766 5565544321    11112344567778999999999888777554 5788999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeC
Q 022233          247 GKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDV  282 (300)
Q Consensus       247 k~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV  282 (300)
                      +++.++||+++..+-....+.+.+++.++.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999998885  3453

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=8.7e-11  Score=94.50  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      ..-++|+||| +|.||+.||++|+..|++|.+||++..        ...++.+..+|++++++|......  +..+.+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~--v~~~~~~~   76 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVVIVSVPINLTLE--TIERLKPY   76 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEEEECSCGGGHHH--HHHHHGGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc--------cccchhhhhccccccccchhhhee--eeeccccc
Confidence            4457999999 999999999999999999999998653        345678899999999999654433  45678899


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      ++++.+++|++.-...-.+++.+.+
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~~  101 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEVH  101 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHHC
T ss_pred             ccCCceEEEecccCHHHHHHHHHHc
Confidence            9999999999986654444554443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.09  E-value=3.2e-11  Score=99.69  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=89.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----C--------CcccCCHH---HHhhcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----S--------YPFYSNVC---ELAANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~--------~~~~~~l~---e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|||||+|.||..||++|...|++|.+|||++++..     +        .....+.+   ..+..++.+++.++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            6899999999999999999999999999999764321     1        01122333   355788999999998887


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      ....++ .....+++|.++||+++..+-+...+.+.|.+..+...-.-|+.
T Consensus        82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            776664 56777899999999999999999999999998888544333443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.07  E-value=1.7e-10  Score=93.18  Aligned_cols=99  Identities=21%  Similarity=0.349  Sum_probs=78.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      ++|||||+|+||+++++.|...|.+|++++|+.+..      .+.....+.++++++||+|+++++.  +    .-.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp--~----~~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP--Q----LFETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG--G----GHHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch--H----hHHHHh
Confidence            589999999999999999999999999999875432      1445567899999999999999963  2    124667


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhC-Cce
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQG-EIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~-~i~  276 (300)
                      +.++++.++|++.-|  +..+.|.+.+..+ ++.
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~~~iv  106 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQDLPLL  106 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTTSCEE
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhcccccch
Confidence            889999999999877  4667777777543 454

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.03  E-value=1.7e-10  Score=94.24  Aligned_cols=113  Identities=18%  Similarity=0.152  Sum_probs=82.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--cccCCHHH-HhhcCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-----VSY--PFYSNVCE-LAANCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-----~~~--~~~~~l~e-~l~~aDvV~l~~p~~~~t~~li~  239 (300)
                      |+|+|||+|.||.++|+.|+..|+  +|++||++.+..     .+.  ....+.++ ....+|+|++++|.. ++..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence            579999999999999999998885  789999976431     121  12233443 345799999999953 344444 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                      +++...++++.+++|++.....-.+++.+.+...-+.+.-+...+
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e  124 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTE  124 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCS
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccc
Confidence            567788999999999999777667777777776656665555444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.94  E-value=1.3e-09  Score=89.36  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------------------CCcccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------------------SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------------~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .|||+|||.|.||..+|..|...|++|.+|+|++....                    ......++.|.+++||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            47999999999999999999999999999999743210                    0112357899999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      |... ++.+ -+++...++++.+++- +-|....+..+.+.++...
T Consensus        81 ~~~~-~~~~-~~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 PAIH-HASI-AANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CGGG-HHHH-HHHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             chhH-HHHH-HHHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            8544 4444 4567788999998774 4555556666777776654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=4.1e-10  Score=90.41  Aligned_cols=84  Identities=12%  Similarity=-0.021  Sum_probs=57.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      |||||+|+||+.||+.|+..+..+.+|+|++....     ......+++|++++||+|++++|... .     .+.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-h-----hHHHhhh
Confidence            79999999999999999874333468998765421     23345678899999999999999643 2     2345555


Q ss_pred             -CCCcEEEEcCCCccc
Q 022233          247 -GKEGVVINIGRGPII  261 (300)
Q Consensus       247 -k~ga~lIn~srg~~v  261 (300)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999987654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.76  E-value=3.1e-09  Score=86.54  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC--------CC----cccCCHHHHhhcCCEEEEecCC-Ch
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV--------SY----PFYSNVCELAANCDILIICCGL-TA  232 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------~~----~~~~~l~e~l~~aDvV~l~~p~-~~  232 (300)
                      .+...+|.|||.|..|..-++.++++|.+|.++|.+.....        ..    .....+++.+++||+||.++-. ..
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46788999999999999999999999999999998754321        01    1123578899999999987652 34


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcC
Q 022233          233 ETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ....+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            567899999999999999999997

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.67  E-value=1e-08  Score=83.20  Aligned_cols=94  Identities=22%  Similarity=0.318  Sum_probs=72.0

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CcccCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------S--YPFYSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      .+.+++|.|||.|.||+.+++.|...|. ++++++|+.+...      +  ...+.++.+.+.++|+|+.+++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            4889999999999999999999999998 6999999864321      2  2235678889999999999976   3345


Q ss_pred             cchHHHHhcC------CCCcEEEEcCCCcccC
Q 022233          237 MINKQVLSAL------GKEGVVINIGRGPIID  262 (300)
Q Consensus       237 li~~~~l~~m------k~ga~lIn~srg~~vd  262 (300)
                      +|+++.++..      ++..++||.|...-||
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            6776665421      3456999998765454

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.58  E-value=1.6e-08  Score=81.12  Aligned_cols=100  Identities=19%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-CEEEEECCCCCCC------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-CSISYNSRTKKPS------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      ++|||||+|+||+++++.|...| .+|.+++|+++..      .+.....+.++ +++||+|+++++. ....     +.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~~~-----~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QDME-----AA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HHHH-----HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HHHH-----Hh
Confidence            58999999999999999887666 8999999986532      13343444544 6789999999972 2222     33


Q ss_pred             HhcC-CCCcEEEEcCCCcccCHHHHHHHHH-hCCceEE
Q 022233          243 LSAL-GKEGVVINIGRGPIIDEQELVRCLV-QGEIKGA  278 (300)
Q Consensus       243 l~~m-k~ga~lIn~srg~~vd~~aL~~aL~-~~~i~~a  278 (300)
                      ++.+ +.+.++|++.-|-  ..+.+.+.+. ..++..+
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence            4444 3478999988876  4566777774 3345444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=5.5e-08  Score=78.05  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=67.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CC-----cccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SY-----PFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~-----~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |+|+|||.|.||..+|..|...|++|.+++|......       ..     ....+..+.+..+|+|+++++. .+++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            6899999999999999999999999999999775421       11     1123456778899999999985 445544


Q ss_pred             chHHHHhcCCCCcEEEEcCCC
Q 022233          238 INKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg  258 (300)
                      + +.+...+.+++.++.+.-|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 4566777889988888766

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.56  E-value=1.2e-07  Score=77.97  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcc-----------------------------c
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPF-----------------------------Y  211 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~-----------------------------~  211 (300)
                      .+...+|.|||.|..|...++.++++|.+|.++|.+.....     +..+                             .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            46677999999999999999999999999999998765311     0000                             0


Q ss_pred             CCHHHHhhcCCEEEEecCC-ChhhhhcchHHHHhcCCCCcEEEEcC--CCccc
Q 022233          212 SNVCELAANCDILIICCGL-TAETHHMINKQVLSALGKEGVVINIG--RGPII  261 (300)
Q Consensus       212 ~~l~e~l~~aDvV~l~~p~-~~~t~~li~~~~l~~mk~ga~lIn~s--rg~~v  261 (300)
                      ..+.+.+++||+|+.++-. ......+|+++.++.||||+++||++  .|+.+
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCcc
Confidence            1244568899999976542 23356689999999999999999997  55544

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.50  E-value=6.9e-08  Score=78.54  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=68.2

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------SVSYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      |++|+|+|||||.-|++=|.+|+..|++|.+--|...+      ..++. ..+++|+.+.||+|.+.+|...+ ..+..+
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~~~eA~~~aDiim~L~PD~~q-~~vy~~   91 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VADVKTAVAAADVVMILTPDEFQ-GRLYKE   91 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EECHHHHHHTCSEEEECSCHHHH-HHHHHH
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-cccHHHHhhhcCeeeeecchHHH-HHHHHH
Confidence            78999999999999999999999999999876554322      12333 46899999999999999995444 345567


Q ss_pred             HHHhcCCCCcEEE
Q 022233          241 QVLSALGKEGVVI  253 (300)
Q Consensus       241 ~~l~~mk~ga~lI  253 (300)
                      +....||+|..+.
T Consensus        92 ~I~p~lk~g~~L~  104 (182)
T d1np3a2          92 EIEPNLKKGATLA  104 (182)
T ss_dssp             HTGGGCCTTCEEE
T ss_pred             hhhhhcCCCcEEE
Confidence            8899999998864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.46  E-value=3.7e-07  Score=76.29  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC------------CC-------------CCcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP------------SV-------------SYPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~------------~~-------------~~~~~~~l~e~l~~aDvV  224 (300)
                      |+|+|||+|.+|.++|..|+..|++|++||.+.+.            +.             ......+++++++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            68999999999999999999999999999976431            00             012346788999999999


Q ss_pred             EEecCCCh---------hhhhcch--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          225 IICCGLTA---------ETHHMIN--KQVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       225 ~l~~p~~~---------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      ++|+|...         .....+.  ...+...+++.++|..|...+--.+.+...+
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~  137 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPL  137 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHH
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhh
Confidence            99999521         1112221  2345567789999999999887777766544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.45  E-value=1.1e-07  Score=78.31  Aligned_cols=89  Identities=16%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------------CC-------CcccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------------VS-------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------------~~-------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |+|+|||.|.+|.++|..|...|.+|..|.|..++.             .+       .....++++++++||+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            689999999999999999999999999998743210             00       1124678999999999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCccc
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPII  261 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  261 (300)
                      . ...+.++ +++...+++. .+|.++.|...
T Consensus        81 s-~~~~~~~-~~l~~~l~~~-~ii~~tkg~~~  109 (180)
T d1txga2          81 T-DGVLPVM-SRILPYLKDQ-YIVLISKGLID  109 (180)
T ss_dssp             G-GGHHHHH-HHHTTTCCSC-EEEECCCSEEE
T ss_pred             h-hhhHHHH-Hhhccccccc-eecccccCccc
Confidence            4 4455454 4566667665 55666677543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=6.1e-08  Score=73.74  Aligned_cols=89  Identities=20%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-------CCc---ccCCHHHHhhcCCEEEEecC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------SYP---FYSNVCELAANCDILIICCG  229 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------~~~---~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |+  .-+|+|++|+|||.|.+|.+-|+.|..+|++|+++++...+..       ...   ...+ ++.+..+++|+.+..
T Consensus         5 Pi--~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1           5 PI--FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             EE--EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             ce--EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCC
Confidence            55  5689999999999999999999999999999999987654321       111   1111 345778998888754


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      . ++    ++....+.+|+..++||++
T Consensus        82 d-~~----~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 D-DT----VNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             C-HH----HHHHHHHHHHHTTCEEEET
T ss_pred             C-HH----HHHHHHHHHHHcCCEEEeC
Confidence            2 22    5667777778888999975

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.38  E-value=2.4e-07  Score=77.68  Aligned_cols=103  Identities=21%  Similarity=0.293  Sum_probs=78.4

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcccCCHHHHhh-cCCEEEEecCCChhhhhcch
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPFYSNVCELAA-NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li~  239 (300)
                      +|.|+||+|-|+|++|+.+|+.|..+|++|+++|......     .+. ...+.++++. .||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-~~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-TAVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-cccCccccccccceeeeccc-----cccccc
Confidence            4899999999999999999999999999999998764321     122 2346677765 799888663     456789


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++..+.++- -+++..+-+++.++. ..+.|++++|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            999998874 466777777776664 45677777774

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.3e-07  Score=76.20  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------------CcccCCHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------S------------------YPFYSNVC  215 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~------------------~~~~~~l~  215 (300)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999998764200                0                  11245778


Q ss_pred             HHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          216 ELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       216 e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      +++++||+|+=++|-+-+.+.-+-+++-+.++++++|...+.+-  ....|...+....- ..++=-|.+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r-~ig~HffnP  151 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDR-FAGLHFFNP  151 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGG-EEEEEECSS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccCHhH-EEeeccccc
Confidence            89999999999999888877666677777789998877655543  34556666554322 355554543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.35  E-value=7.5e-08  Score=80.07  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC-----------C--C------CCcccCCHHHHhhcCCEEEEec
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP-----------S--V------SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~-----------~--~------~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .-++|+|||.|.+|.++|..|...|.+|..|.|+++.           .  .      ......++++++++||+|++++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            3458999999999999999999999999999876431           0  0      1123468999999999999999


Q ss_pred             CCChhhhhcchHH---H-HhcCCCCcEEEEcCCC
Q 022233          229 GLTAETHHMINKQ---V-LSALGKEGVVINIGRG  258 (300)
Q Consensus       229 p~~~~t~~li~~~---~-l~~mk~ga~lIn~srg  258 (300)
                      | +...+.++..-   . ....+++..+|+++.|
T Consensus        86 P-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 P-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             C-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             c-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9 44444443211   0 1123567788998877

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.33  E-value=6.6e-07  Score=75.08  Aligned_cols=87  Identities=15%  Similarity=0.315  Sum_probs=64.6

Q ss_pred             ccCC-CEEEEEecChhHHHHHHHHHh------CCCEEEEE-CCCCCC-----CCCCc----ccCCHHHHhhcCCEEEEec
Q 022233          166 KLGG-KRVGIVGLGSIGSLVAKRLDA------FGCSISYN-SRTKKP-----SVSYP----FYSNVCELAANCDILIICC  228 (300)
Q Consensus       166 ~l~g-~~vgIiG~G~IG~~~A~~l~~------~g~~V~~~-~~~~~~-----~~~~~----~~~~l~e~l~~aDvV~l~~  228 (300)
                      -+.| |+|+|||||..|++=|.+|+.      .|.+|.+- .+....     ..+..    ...+.+|+.++||+|.+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            3678 899999999999999999998      55677543 332221     12332    1347889999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEE
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVIN  254 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn  254 (300)
                      |+..+.. +. ++..+.||+|..+.=
T Consensus       120 PDe~Q~~-vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQAD-NY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHHHH-HH-HHHHHHSCTTCEEEE
T ss_pred             chHHHHH-HH-HHHHHhcCCCceeee
Confidence            9665544 44 578899999988653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.21  E-value=2.7e-07  Score=76.38  Aligned_cols=114  Identities=13%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------CC------------cccCCHHHHhhcC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------SY------------PFYSNVCELAANC  221 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~------------~~~~~l~e~l~~a  221 (300)
                      ++|+|||.|.||+.+|..+...|++|..||++++...                +.            ....+..+.+.+|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            4799999999999999999999999999999764210                00            0011223457899


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCC
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENE  286 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~E  286 (300)
                      |+|+=++|-+-+.+.-+-+++-+.++++++|...+.+-.  ...|.+.+....- ..++=.|.+-
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~p~r-~~g~Hf~nP~  146 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALKRPEN-FVGMHFFNPV  146 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCSCGGG-EEEEECCSST
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhccCchh-eEeeccccCc
Confidence            999999999988887677788888999999877766544  4566666654322 3455545443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=8.6e-07  Score=64.78  Aligned_cols=62  Identities=23%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------CCcc-c-CCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------SYPF-Y-SNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~~~~-~-~~l~e~l~~aDvV~l~  227 (300)
                      +++||+|+|+|+|..|+++|+.|...|++|+++|.+..+..      .... . ..-++.+.+.|+|+++
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            47899999999999999999999999999999987654321      1111 1 1124567888988886

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=3.3e-06  Score=68.70  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEecChh-HHHHHHHHHhCCCEEEEECCCCCC-----C---CCC--------cccCCHHHHhhcCCEEEE
Q 022233          164 GSKLGGKRVGIVGLGSI-GSLVAKRLDAFGCSISYNSRTKKP-----S---VSY--------PFYSNVCELAANCDILII  226 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~I-G~~~A~~l~~~g~~V~~~~~~~~~-----~---~~~--------~~~~~l~e~l~~aDvV~l  226 (300)
                      |.++.||++.|||-++| |+++|..|...|..|+..+.....     .   ...        ...+.+++...++|+|+.
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIs  103 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  103 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEE
Confidence            67899999999999875 999999999999999877643211     0   000        011237788889999999


Q ss_pred             ecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          227 CCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       227 ~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      ++|...-   .+..   +..|+|+++||++-...+++
T Consensus       104 avG~p~~---~i~~---d~ik~GavvIDvGi~~~~~~  134 (171)
T d1edza1         104 GVPSENY---KFPT---EYIKEGAVCINFACTKNFSD  134 (171)
T ss_dssp             CCCCTTC---CBCT---TTSCTTEEEEECSSSCCBCG
T ss_pred             ccCCCcc---ccCh---hhcccCceEeeccccccccc
Confidence            9975321   1332   23689999999997765554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1.4e-06  Score=67.50  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CC-------CcccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VS-------YPFYSNVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~-------~~~~~~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      |++.|+|+|++|+.+|+.|...|.+|+++|.+++..     .+       ......|+++ +.+||.+++++|....+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            578999999999999999999999999998775421     11       1223345665 889999999999776654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=9.6e-06  Score=65.39  Aligned_cols=80  Identities=21%  Similarity=0.357  Sum_probs=66.0

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|++|+..+...         .++.+.+++||+|+.++..    .++|..+ 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G~----p~~i~~~-   97 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGD-   97 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhccC----ccccccc-
Confidence            5568999999999998 89999999999999998876532         3688999999999999863    3556544 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 022233          243 LSALGKEGVVINIGRGP  259 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~  259 (300)
                        .+|+|+++||++--.
T Consensus        98 --~vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          98 --WIKEGAIVIDVGINR  112 (166)
T ss_dssp             --TSCTTCEEEECCCEE
T ss_pred             --ccCCCcEEEecCcee
Confidence              578999999997543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.9e-05  Score=63.98  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHH
Q 022233          164 GSKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.++.||++.|||-+. +|+++|..|...|++|+.++...         .++.+..++||+|+.+++..    +++..  
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G~~----~~i~~--   98 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQP----EMVKG--   98 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCCT----TCBCG--
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhccccc----ccccc--
Confidence            5679999999999987 89999999999999999877642         36788999999999998743    44543  


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 022233          243 LSALGKEGVVINIGRGPIID  262 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd  262 (300)
                       ...|+|+++||++--.+.|
T Consensus        99 -~~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          99 -EWIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             -GGSCTTCEEEECCCBC---
T ss_pred             -ccccCCCeEeccCcccccc
Confidence             3578999999998655443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.93  E-value=2.2e-06  Score=68.69  Aligned_cols=100  Identities=17%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC------C--------CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV------S--------YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------~--------~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+.....      +        ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            368999999999999999999999999999999875321      1        11123456678899999999885433


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..  +   .....+.+..+++++.-. -+...+.+.....
T Consensus        81 ~~--~---~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~  114 (182)
T d1e5qa1          81 AT--V---IKSAIRQKKHVVTTSYVS-PAMMELDQAAKDA  114 (182)
T ss_dssp             HH--H---HHHHHHHTCEEECSSCCC-HHHHHTHHHHHHT
T ss_pred             hH--H---HHHHHhhccceeecccCc-HHHHHHHHHhccc
Confidence            22  1   122334566777776432 1233444444433

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.88  E-value=2.8e-05  Score=62.66  Aligned_cols=65  Identities=26%  Similarity=0.377  Sum_probs=49.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCCC--CCcccCCHHHHhhcCCEEEEecCCChh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV--SYPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~--~~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..+|||||+|.||+..++.++.. ++++. +++++.....  ......+.++++.+.|+|++++|....
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h   71 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATD   71 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCccc
Confidence            35899999999999999999975 56765 6677654432  223345777888999999999997654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.83  E-value=2.4e-05  Score=64.24  Aligned_cols=114  Identities=12%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-------C----------------CCcccCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-------V----------------SYPFYSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-------~----------------~~~~~~~l~e~l~~aDvV~l  226 (300)
                      |+|+|||+|.+|..+|..++ .|++|++||.+++..       .                ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998775 699999999765320       0                00112355667889999999


Q ss_pred             ecCCChhhhh-cch-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC
Q 022233          227 CCGLTAETHH-MIN-------KQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKGAGLDVFENEPDVP  290 (300)
Q Consensus       227 ~~p~~~~t~~-li~-------~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~EP~~~  290 (300)
                      ++|....... ..+       .+.+...+++.++|--|.-.+-..+.+..-+.+.++.      |.+|-+.+
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~  145 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRE  145 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCT
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcch
Confidence            9996543221 111       1223345678899999998888888888887776653      56776654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.7e-05  Score=63.95  Aligned_cols=107  Identities=16%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC---------CCcccCCHHH-HhhcCCEEEEecCCChh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV---------SYPFYSNVCE-LAANCDILIICCGLTAE  233 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---------~~~~~~~l~e-~l~~aDvV~l~~p~~~~  233 (300)
                      +..+.||+|.|+|.|-.+++++..|...|.+|.+++|+.+...         ......++++ ...++|+|+.++|..-.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence            4457899999999999999999999999999999999865321         1111123333 24679999999997654


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      ..  ....-++.++++.+++|+--.+. .+.-|..|-+.|
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             cC--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            22  11112456889999999987764 445555554544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.72  E-value=1.6e-05  Score=61.34  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=57.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYP-------FYSNVCEL-AANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~  235 (300)
                      |+|.|+|+|.+|+.+|+.|...|.+|.+.+.+++..      .+..       ....++++ ++++|.++..++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            589999999999999999999999999998876421      1211       11234444 6889999988775443  


Q ss_pred             hcchHHHHhcCCCCcEEE
Q 022233          236 HMINKQVLSALGKEGVVI  253 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lI  253 (300)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334445556676666654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.70  E-value=6e-05  Score=57.05  Aligned_cols=100  Identities=16%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             CEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhc
Q 022233          170 KRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSA  245 (300)
Q Consensus       170 ~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~  245 (300)
                      |+|+|||.    |..|..+.+.|+..|++|+..+++.+...+...+.++.|+-..-|++++++|. +.+..++. +..+ 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~-~~~~-   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAK-EAVE-   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHH-HHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH-HHHHHHHH-HHHh-
Confidence            68999994    68899999999999999998888766656777788999998889999999984 34444554 3333 


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          246 LGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       246 mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +....+++..+   . ..+++.+.+++.++.
T Consensus        79 ~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            34457777643   2 345677788777775

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.5e-05  Score=63.74  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC-------cccCCHHHHhhcCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY-------PFYSNVCELAANCD  222 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~-------~~~~~l~e~l~~aD  222 (300)
                      +.++.|++|.|+|.|..|++++..|...|. +++.++|+.+...             ..       ....++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            456889999999999999999999999998 6888999865421             00       01123556788999


Q ss_pred             EEEEecCCChhh---hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          223 ILIICCGLTAET---HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       223 vV~l~~p~~~~t---~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      +|+.+.|.....   ..++.  -+..++++.+++|+.-.+. .+ .|.+..++..+
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p~-~T-~ll~~a~~~g~  144 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGC  144 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSSS-SC-HHHHHHHTTTC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhhcCcc-cc-HHHHHHHHCcC
Confidence            999999975432   11221  1456889999999976543 33 34444444433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.65  E-value=2.7e-05  Score=66.14  Aligned_cols=104  Identities=19%  Similarity=0.296  Sum_probs=76.8

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC------CCCcccCCHHHHh-hcCCEEEEecCCChhhhhc
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS------VSYPFYSNVCELA-ANCDILIICCGLTAETHHM  237 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~~~l~e~l-~~aDvV~l~~p~~~~t~~l  237 (300)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.+.+....      .+.. ..+.++++ ..||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence            45899999999999999999999999999999988754321      1222 23455544 5699999884     3566


Q ss_pred             chHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          238 INKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      |+++....++- .+++-.+-..+.+.++- +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88777888864 47788887888877664 556666653

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=7.5e-05  Score=59.45  Aligned_cols=102  Identities=22%  Similarity=0.350  Sum_probs=67.5

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCChhhhhcchH
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      .+|||||+|.||+. .+..++.. ++++. ++|++.+...      +...+.++++++++.|+|++++|.....+  +-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~--~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD--VVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH--HHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc--ccc
Confidence            48999999999986 46667654 66764 6788765421      34556789999999999999999665433  223


Q ss_pred             HHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          241 QVLSALGKE-GVVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       241 ~~l~~mk~g-a~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ..++   .| .+++.- ---.+-+...|.++.++.++.
T Consensus        80 ~al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TLLN---AGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccc---ccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            3333   33 455553 122345667777777666553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=7.8e-05  Score=55.98  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      ..+.||||+|.|..|+.+|..++.+|+++.++|+++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            45678999999999999999999999999999987654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.54  E-value=0.0001  Score=58.50  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +.+||+|||.|.+|+.+|..++..+. ++..+|.++....             +.    ....+.++.+++||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46799999999999999998887775 8999998764311             11    112456788999999999874


Q ss_pred             CC--h------hhhh-cc--h----HH---HHhcCCCCcEEEEcCCC
Q 022233          230 LT--A------ETHH-MI--N----KQ---VLSALGKEGVVINIGRG  258 (300)
Q Consensus       230 ~~--~------~t~~-li--~----~~---~l~~mk~ga~lIn~srg  258 (300)
                      ..  +      .++. ++  +    ++   .+....|.+++++++-.
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            21  1      1221 11  1    11   23344688999998643

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.52  E-value=7.2e-05  Score=63.81  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             CCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          207 SYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       207 ~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.....+..|++++||+|++++|..+.+..++ +++.+.+++|++++|+|.........+.+.+++..+.
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            45566899999999999999999887777777 6888999999999999999999999999999887775

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.51  E-value=0.00012  Score=57.39  Aligned_cols=88  Identities=19%  Similarity=0.387  Sum_probs=54.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------C-C------cccCCHHHHhhcCCEEEEecCCCh-
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------S-Y------PFYSNVCELAANCDILIICCGLTA-  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------~-~------~~~~~l~e~l~~aDvV~l~~p~~~-  232 (300)
                      ++|+|||.|.+|..+|-.+...+.  ++..+|++.....       . .      .....-.+.+++||+|+++.-... 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999999987775  8999998765422       0 0      111223467899999999854221 


Q ss_pred             --hhh-hcc--h----HH---HHhcCCCCcEEEEcCC
Q 022233          233 --ETH-HMI--N----KQ---VLSALGKEGVVINIGR  257 (300)
Q Consensus       233 --~t~-~li--~----~~---~l~~mk~ga~lIn~sr  257 (300)
                        +++ .++  |    ++   .+....|.+++|+++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence              111 111  1    11   2333468899999865

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.48  E-value=0.00013  Score=62.30  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC-----CC------------------------CCCcccCCH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK-----PS------------------------VSYPFYSNV  214 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~-----~~------------------------~~~~~~~~l  214 (300)
                      +.+|.|+||.|=|+|++|+.+|+.|...|++|+..+....     ..                        .+.....+.
T Consensus        26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (242)
T d1v9la1          26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  105 (242)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCc
Confidence            3458899999999999999999999999999876543210     00                        011112233


Q ss_pred             HHHh-hcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          215 CELA-ANCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       215 ~e~l-~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++++ ..||+++-|..     .+.|+++..+.++- .+++-.+-+++ ..++ .+.|.++.|.
T Consensus       106 ~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         106 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             TGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             chhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            4544 47999998853     45677777777864 57778888886 5666 4888888875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=7.4e-05  Score=58.95  Aligned_cols=97  Identities=22%  Similarity=0.380  Sum_probs=61.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      .+++|+|||.|.+|..+|..+...|.  ++..+|+.+....               ......+-.+.+++||+|+++...
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            47799999999999999999987775  7999998654210               111122344779999999997653


Q ss_pred             Ch---hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          231 TA---ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       231 ~~---~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      ..   +++ .++  |.       +.+....|.+++|+++  .++|.-.-
T Consensus        85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt--NPvd~~t~  131 (148)
T d1ldna1          85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT--NPVDILTY  131 (148)
T ss_dssp             CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHHHHH
T ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec--CccHHHHH
Confidence            22   111 111  11       1233346788999984  44554333

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.40  E-value=0.0001  Score=58.02  Aligned_cols=88  Identities=24%  Similarity=0.360  Sum_probs=57.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC--cccCCHHHHhhcCCEEEEecCCCh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------SY--PFYSNVCELAANCDILIICCGLTA  232 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~~--~~~~~l~e~l~~aDvV~l~~p~~~  232 (300)
                      |+|+|||.|.+|..+|-.|...|.  ++..+|.+.....             ..  ....+-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            699999999999999999987775  7889998654311             01  111122356899999999865321


Q ss_pred             -------hhhh-cc--h----HH---HHhcCCCCcEEEEcCC
Q 022233          233 -------ETHH-MI--N----KQ---VLSALGKEGVVINIGR  257 (300)
Q Consensus       233 -------~t~~-li--~----~~---~l~~mk~ga~lIn~sr  257 (300)
                             .++. ++  |    ++   .+....|.+++|+++-
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence                   1111 11  1    11   2344578999999964

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.39  E-value=9e-05  Score=60.61  Aligned_cols=40  Identities=23%  Similarity=0.373  Sum_probs=36.9

Q ss_pred             ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+.+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            6689999999999 699999999999999999999998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00012  Score=57.56  Aligned_cols=39  Identities=28%  Similarity=0.470  Sum_probs=36.0

Q ss_pred             ccCcccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECC
Q 022233          160 SLGIGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSR  200 (300)
Q Consensus       160 ~~~~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~  200 (300)
                      |+  ..+|.||++.|||.|.+|..-|+.|...|++|+++++
T Consensus         6 pl--~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           6 QL--AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             EE--EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             hh--heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            66  6789999999999999999999999999999998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00016  Score=59.25  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------cccCCHHHHhhcCCEEEEecCCC
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SY-------PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~-------~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ..|+|.|+| .|.||+.+++.|...|++|..+.|++.+..     +.       ....++.++++++|+|+.++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            367999999 699999999999999999999988654321     11       12345678899999999988643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.0001  Score=57.60  Aligned_cols=92  Identities=26%  Similarity=0.388  Sum_probs=59.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC--------------CCcccCCHHHHhhcCCEEEEecCC--C
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV--------------SYPFYSNVCELAANCDILIICCGL--T  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~--------------~~~~~~~l~e~l~~aDvV~l~~p~--~  231 (300)
                      ++|+|||.|.+|..+|-.+...+  -++..+|.+++...              ......+..+.+++||+|+++.-.  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999999888655  48999998754211              011122335568999999998632  1


Q ss_pred             h-hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCH
Q 022233          232 A-ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       232 ~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                      + .++ .++  |.       +.+....|.+++++++  .++|.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt--NPvd~  121 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT--NPVDV  121 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC--CcHHH
Confidence            1 111 111  11       2234457889999987  44554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.33  E-value=0.00031  Score=55.15  Aligned_cols=95  Identities=17%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCCCCC-------------C-C-cccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKKPSV-------------S-Y-PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~~~~-------------~-~-~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      ...+||+|||.|.+|..+|..|...|  -+|..+|+..+...             . . ....+. +.+++||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            34779999999999999999999777  48999998753210             0 1 112244 45689999999764


Q ss_pred             CCh---hhh--------hcch--HHHHhcCCCCcEEEEcCCCcccCHH
Q 022233          230 LTA---ETH--------HMIN--KQVLSALGKEGVVINIGRGPIIDEQ  264 (300)
Q Consensus       230 ~~~---~t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~  264 (300)
                      ...   .++        .++.  ...+..-.+.+++|+++-  ++|.-
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN--Pvdv~  127 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN--PVDIL  127 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC--ccHHH
Confidence            321   111        1111  112344568899999874  55543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=2.1e-05  Score=63.72  Aligned_cols=107  Identities=15%  Similarity=0.009  Sum_probs=68.5

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CCcccCCHHHHhhcCCEEEEecCCChhh
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SYPFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      ..+.|++|.|+|.|..+++++..|...+.+|++++|+.+...          ........+..+..+|+|+.++|..-..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~   93 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG   93 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccccc
Confidence            357899999999999999999999987789999999865421          0111111122357899999999976432


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 022233          235 HHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQG  273 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~  273 (300)
                      .  ........++++.+++|+.=.....+.-|..|=+.|
T Consensus        94 ~--~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g  130 (171)
T d1p77a1          94 G--TASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLG  130 (171)
T ss_dssp             -----CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             c--ccchhhhhhcccceeeeeeccCcccHHHHHHHHHcC
Confidence            2  111112334567788888766555555555554444

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=0.0006  Score=52.98  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             CCCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          168 GGKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       168 ~g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      .-++|+|||.    |+.|..+++.|+.+|++|+..++......+...+.++.|+-..-|++++++|. +.+..++. +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~-e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH-HHHHHHHH-HHH
Confidence            4679999996    57999999999999999998888766556777788999998899999999984 33444443 333


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          244 SALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       244 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      + +....+++..+   ..+++ +.+.+++.++.
T Consensus        96 ~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi~  123 (139)
T d2d59a1          96 K-KGAKVVWFQYN---TYNRE-ASKKADEAGLI  123 (139)
T ss_dssp             H-HTCSEEEECTT---CCCHH-HHHHHHHTTCE
T ss_pred             H-hCCCEEEEecc---ccCHH-HHHHHHHCCCE
Confidence            3 35557777665   23444 45555665564

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.28  E-value=7.9e-05  Score=66.72  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=64.8

Q ss_pred             CCEEEEEecChhHHHHHHHHH-hCCC-EEEEECCCCCCC----------CCC--cccCCHHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLD-AFGC-SISYNSRTKKPS----------VSY--PFYSNVCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~-~~g~-~V~~~~~~~~~~----------~~~--~~~~~l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      -++++|||.|..++.-++.+. -++. +|.+|+|+++..          .+.  ....+++++++.||+|+++++. +.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence            359999999999999888765 5776 799999986431          122  3467999999999999998763 344


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..++..   +.+|||+.+..++.
T Consensus       207 ~Pv~~~---~~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITP---DMLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECG---GGCCTTCEEEECSC
T ss_pred             Ccccch---hhcCCCCEEeeccc
Confidence            566764   46899999888875

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00052  Score=59.84  Aligned_cols=105  Identities=17%  Similarity=0.292  Sum_probs=72.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---CCCC-------------------cccCCHHHHh-hc
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---SVSY-------------------PFYSNVCELA-AN  220 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---~~~~-------------------~~~~~l~e~l-~~  220 (300)
                      ..+|.|+||.|=|+|++|+.+|+.|...|++|++.+.+.-.   ..+.                   ....+.++++ ..
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            45699999999999999999999999999998765422100   0000                   0011223344 47


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ||+++-|.     +.+.|+.+....++- .+++-.+-|++ ..++ .+.|.+++|.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCE
Confidence            99998874     456688888888864 47788888885 4455 4778887774

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.22  E-value=9.1e-05  Score=59.02  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=32.0

Q ss_pred             CEEEEE-ecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          170 KRVGIV-GLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       170 ~~vgIi-G~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      |||+|| |.|.||+++|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            589999 89999999999999999999999998643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.001  Score=56.15  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHH-hCCCEEEEECCCC------CCC---------------C--CCcccCCHHHHhh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYNSRTK------KPS---------------V--SYPFYSNVCELAA  219 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~~~~~------~~~---------------~--~~~~~~~l~e~l~  219 (300)
                      +.++.|++|.|=|+|++|+.+|+.|. ..|++|+..+...      +..               .  ......+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            45688999999999999999999995 6799987654221      100               0  0011235667665


Q ss_pred             -cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          220 -NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       220 -~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                       .||+++-|.     ..+.|+.+....++. .+++-.+-+++. .++ .+.|.++.|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence             899988773     456799999999985 477888888864 444 5778888775

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.20  E-value=0.00028  Score=54.22  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=75.4

Q ss_pred             cCCCEEEEEec----ChhHHHHHHHHHhCC-CEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          167 LGGKRVGIVGL----GSIGSLVAKRLDAFG-CSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       167 l~g~~vgIiG~----G~IG~~~A~~l~~~g-~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+..++..+...+...+.++.|+-..-|++++++| .+.+..++. +
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~~-~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTLI-Q   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHHH-H
Confidence            56789999997    899999999999766 6899888877666677778899999889999999998 445555553 3


Q ss_pred             HHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHhCCce
Q 022233          242 VLSALGKEGVVINIGRGPI-----IDEQELVRCLVQGEIK  276 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~-----vd~~aL~~aL~~~~i~  276 (300)
                      ..+.=-++++++.-+-++.     ..+++|.+..++..+.
T Consensus        84 ~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            3332233444444433332     2344566666665553

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.18  E-value=0.00039  Score=55.25  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=56.5

Q ss_pred             CEEEEEecChhHHH-HHHHHHhCCC-EEE-EECCCCCCC-------CCCcc-cCCHHHHh-----hcCCEEEEecCCChh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAFGC-SIS-YNSRTKKPS-------VSYPF-YSNVCELA-----ANCDILIICCGLTAE  233 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~g~-~V~-~~~~~~~~~-------~~~~~-~~~l~e~l-----~~aDvV~l~~p~~~~  233 (300)
                      .++||||.|.||+. +.+.++.+.. ++. +.+++....       .+... ..++++++     .+.|+|++++|...+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999985 6778877654 664 457665421       12222 23344443     467999999885544


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCC
Q 022233          234 THHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      ..   .+..+...+.|.++||.+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            44   2344666799999999986

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.17  E-value=0.00018  Score=63.76  Aligned_cols=84  Identities=15%  Similarity=0.248  Sum_probs=64.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA-FGC-SISYNSRTKKPSV---------SYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~-~g~-~V~~~~~~~~~~~---------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      -+++||||.|.+++.-++.+.. +.. +|.+|+|+.+...         +.....+.++.+.+||+|++++|   .+..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence            3589999999999999998874 665 7999999865321         23334577888999999999976   44566


Q ss_pred             chHHHHhcCCCCcEEEEcCCC
Q 022233          238 INKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~srg  258 (300)
                      +..   +.+++|+.++.++.-
T Consensus       202 ~~~---~~l~~G~hv~~iGs~  219 (320)
T d1omoa_         202 VKA---EWVEEGTHINAIGAD  219 (320)
T ss_dssp             BCG---GGCCTTCEEEECSCC
T ss_pred             cch---hhcCCCCeEeecCCc
Confidence            754   458999999999753

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=0.00048  Score=53.10  Aligned_cols=87  Identities=20%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCC--CC--------------CCcccCCHHHHhh
Q 022233          166 KLGGKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKP--SV--------------SYPFYSNVCELAA  219 (300)
Q Consensus       166 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~--~~--------------~~~~~~~l~e~l~  219 (300)
                      .+.+++|+|+|+          +.-...+++.|...|++|.+||+.-..  ..              ......+++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            367889999998          567889999999999999999974211  00              1223578999999


Q ss_pred             cCCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          220 NCDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       220 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .||+|+++++..+     + .++...++++.+++|+ ||-
T Consensus        90 ~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~-~~~  122 (136)
T d1mv8a3          90 SSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL-VGF  122 (136)
T ss_dssp             HCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES-SSC
T ss_pred             hceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC-CCC
Confidence            9999999987433     2 3445567788999998 553

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00069  Score=52.35  Aligned_cols=101  Identities=17%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             CCCEEEEEec----ChhHHHHHHHHHhCCCEEEEECCCCCC--CCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHH
Q 022233          168 GGKRVGIVGL----GSIGSLVAKRLDAFGCSISYNSRTKKP--SVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       168 ~g~~vgIiG~----G~IG~~~A~~l~~~g~~V~~~~~~~~~--~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      .-|+|+|||.    ++.|..+++.|+.+|+++..++.++..  ..+...+.++.++-..-|++++++| .+.+..++.+ 
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~~-   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLPE-   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHHH-
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHHHH-
Confidence            4679999997    789999999999999999988876542  2355667889998888999999998 4445555543 


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      ..+ +...++|+..+   ..+++ +.+.+++.++
T Consensus        90 ~~~-~g~k~i~~q~G---~~~~e-~~~~a~~~Gi  118 (136)
T d1iuka_          90 VLA-LRPGLVWLQSG---IRHPE-FEKALKEAGI  118 (136)
T ss_dssp             HHH-HCCSCEEECTT---CCCHH-HHHHHHHTTC
T ss_pred             HHh-hCCCeEEEecC---ccCHH-HHHHHHHcCC
Confidence            333 35567888654   34554 5555555555

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.12  E-value=0.00053  Score=54.41  Aligned_cols=103  Identities=12%  Similarity=0.160  Sum_probs=65.6

Q ss_pred             CEEEEEecChhHHH-HHHHHHhC-CCEEEEECCCCCCC------CCC-cccCCHHHHhh-cCCEEEEecCCChhhhhcch
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAF-GCSISYNSRTKKPS------VSY-PFYSNVCELAA-NCDILIICCGLTAETHHMIN  239 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~-g~~V~~~~~~~~~~------~~~-~~~~~l~e~l~-~aDvV~l~~p~~~~t~~li~  239 (300)
                      .+|||||+|.+|+. ....++.. +.++.++++++...      .+. ..+.+.+++++ +.|+|++++|.....+  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            48999999999976 56677766 45777888765421      122 23567778775 5799999998665544  33


Q ss_pred             HHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          240 KQVLSALGKEGVVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ...++. ++ .+++.- ---.+-+.+.|.++.++.++.
T Consensus        80 ~~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            334442 22 366653 223345667888887766553

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.11  E-value=0.0008  Score=52.91  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CCc---ccCCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SYP---FYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~~---~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ..||+|||.|.+|+++|..+...+. ++..+|+++....             ...   ...+..+.+++||+|+++.-..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4599999999999999988887665 7889998764311             111   1124457789999999987632


Q ss_pred             hh---h-----h-hcc--hH----HH---HhcCCCCcEEEEcCCC
Q 022233          232 AE---T-----H-HMI--NK----QV---LSALGKEGVVINIGRG  258 (300)
Q Consensus       232 ~~---t-----~-~li--~~----~~---l~~mk~ga~lIn~srg  258 (300)
                      ..   +     + .++  |.    ++   +....|.+++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     1 111  22    22   3334588999998754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.07  E-value=0.00039  Score=54.09  Aligned_cols=95  Identities=21%  Similarity=0.236  Sum_probs=61.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCc-ccCCHHHHhhcCCEEEEec--C
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV---------------SYP-FYSNVCELAANCDILIICC--G  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~---------------~~~-~~~~l~e~l~~aDvV~l~~--p  229 (300)
                      ++|+|||.|.+|.++|..+...|.  ++..+|.++....               ... ...+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999998774  8999998765311               011 1134457789999999985  3


Q ss_pred             CChh-hhh-cc--h----H---HHHhcCCCCcEEEEcCCCcccCHHHH
Q 022233          230 LTAE-THH-MI--N----K---QVLSALGKEGVVINIGRGPIIDEQEL  266 (300)
Q Consensus       230 ~~~~-t~~-li--~----~---~~l~~mk~ga~lIn~srg~~vd~~aL  266 (300)
                      ..+. ++. ++  |    +   +.+....|.+++++++-  ++|.-..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~~~~  126 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTH  126 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHHHHH
Confidence            2321 111 11  1    1   12333458899999865  4555433

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00014  Score=57.99  Aligned_cols=86  Identities=24%  Similarity=0.390  Sum_probs=57.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcc------cCC-HHHHhhcCCEEEEecCCChhhhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPF------YSN-VCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~------~~~-l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      |.+|.|+|.|.+|...++.++.+|++|++.++++.+..     ++..      ..+ .+......|+++.++....... 
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~-  106 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID-  106 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC-
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccch-
Confidence            78999999999999999999999999999988765421     2211      112 2234456788888765432211 


Q ss_pred             cchHHHHhcCCCCcEEEEcCC
Q 022233          237 MINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~sr  257 (300)
                       + ...++.++++..++.++-
T Consensus       107 -~-~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         107 -F-NIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -T-TTGGGGEEEEEEEEECCC
T ss_pred             -H-HHHHHHhhccceEEEecc
Confidence             1 234566777777777753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00046  Score=55.63  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEE-EECCCCCCC------C----CCcccCCHHHHhh--cCCEEEEecCCChhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSIS-YNSRTKKPS------V----SYPFYSNVCELAA--NCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~------~----~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~  235 (300)
                      .+|||||+|.||+..++.++.. +++|. +++++.+..      .    ....+.+++++++  +.|+|++++|.....+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            3899999999999999999876 56776 567765321      1    1234679999985  4689999998655444


Q ss_pred             hcchHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          236 HMINKQVLSALGKEG-VVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       236 ~li~~~~l~~mk~ga-~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                        +   ....++.|. +++.- .--.+-+.+.|.+..++.++.
T Consensus        82 --~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 --W---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             --H---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             --h---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence              2   223344443 34432 112344567788888877665

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.03  E-value=0.00081  Score=53.25  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHH---Hh-----hcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCE---LA-----ANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e---~l-----~~aDvV~l~~  228 (300)
                      |.+|.|+|.|.||...++.++.+|.+|++.++++.+.     .++.       ...+..+   .+     ..+|+|+-++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~  106 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS  106 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence            6799999999999999999999999999998875431     1211       0112222   22     3479998887


Q ss_pred             CCChhhhhcchHHHHhcCCCCcEEEEcCCCc
Q 022233          229 GLTAETHHMINKQVLSALGKEGVVINIGRGP  259 (300)
Q Consensus       229 p~~~~t~~li~~~~l~~mk~ga~lIn~srg~  259 (300)
                      .. +.+    -...+..++++..++.++-..
T Consensus       107 g~-~~~----~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2         107 GN-EKC----ITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             CC-HHH----HHHHHHHSCTTCEEEECSCCS
T ss_pred             CC-hHH----HHHHHHHHhcCCceEEEecCC
Confidence            53 332    235567889999999998653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=6.4e-05  Score=60.84  Aligned_cols=108  Identities=18%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-----cccCCHHHHhhcCCEEEEec
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSV----------SY-----PFYSNVCELAANCDILIICC  228 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------~~-----~~~~~l~e~l~~aDvV~l~~  228 (300)
                      +.+++||+|.|+|.|..+++++..|...| +|.+++|+.+...          ..     ....+++..+..+|+|+.+.
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence            44689999999999999999999998877 8999999865421          00     11245566678899999999


Q ss_pred             CCChhhh-hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          229 GLTAETH-HMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       229 p~~~~t~-~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                      |...... ..-..-.+..++++.+++|+.-.+..  ..|.++.++..
T Consensus        92 p~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~~G  136 (177)
T d1nvta1          92 PIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKKVN  136 (177)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHTTT
T ss_pred             cccccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHHCC
Confidence            9653211 10000123456788999999765533  34444444443

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.90  E-value=0.0003  Score=56.14  Aligned_cols=93  Identities=13%  Similarity=0.255  Sum_probs=61.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC--cccCCHHHHhhcCCEEEEec
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------SY--PFYSNVCELAANCDILIICC  228 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~~--~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+..++|+|||.|.+|..+|-.|...|.  ++..+|.+.+...             ..  .....-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            3667899999999999999999998886  7999998653211             00  01122346689999999976


Q ss_pred             CCC--h-hhhh-cc--hHH-------HHhcCCCCcEEEEcCCC
Q 022233          229 GLT--A-ETHH-MI--NKQ-------VLSALGKEGVVINIGRG  258 (300)
Q Consensus       229 p~~--~-~t~~-li--~~~-------~l~~mk~ga~lIn~srg  258 (300)
                      -..  + +++- ++  |.+       .+....+.+++|+++..
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            432  1 2221 12  111       22334688999999653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00087  Score=53.27  Aligned_cols=102  Identities=20%  Similarity=0.321  Sum_probs=68.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHh--------hcCCEEEEecC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELA--------ANCDILIICCG  229 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l--------~~aDvV~l~~p  229 (300)
                      |.+|.|+|.|.||...++.++.+|. +|++.++++.+.     .++..     ..+..+..        ..+|+|+-++.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G  106 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG  106 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence            6699999999999999999999999 799998876431     12211     12333322        25899999886


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCc---ccCHHHHHHHHHhCCceE
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGP---IIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~---~vd~~aL~~aL~~~~i~~  277 (300)
                      . +.+    -+..++.+++|..++.++-.+   .+|...+.  .++-++.|
T Consensus       107 ~-~~~----~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~--~k~l~i~G  150 (171)
T d1pl8a2         107 A-EAS----IQAGIYATRSGGTLVLVGLGSEMTTVPLLHAA--IREVDIKG  150 (171)
T ss_dssp             C-HHH----HHHHHHHSCTTCEEEECSCCCSCCCCCHHHHH--HTTCEEEE
T ss_pred             C-chh----HHHHHHHhcCCCEEEEEecCCCCCccCHHHHH--HCCcEEEE
Confidence            4 322    246678899999999988543   34544332  23445554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00072  Score=53.92  Aligned_cols=100  Identities=15%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC------CCcccCCHHHHhhcCCEEEEecCCC--hhhhh--
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV------SYPFYSNVCELAANCDILIICCGLT--AETHH--  236 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------~~~~~~~l~e~l~~aDvV~l~~p~~--~~t~~--  236 (300)
                      .+++|.|+|.|..+++++..|+..|+ +|.+++|+.+...      +.....++  ...++|+|+.++|..  +....  
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpiGm~~~~~~~~   93 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSIGMKGGKEEMD   93 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheeccccCCcccccccc
Confidence            58899999999999999999999998 7999999865421      11111111  135789999999953  11111  


Q ss_pred             -cchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 022233          237 -MINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       237 -li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~  274 (300)
                       .++...   ++++.+++|+--.+. .+. |++..++.+
T Consensus        94 l~~~~~~---~~~~~~v~D~vY~P~-~T~-ll~~A~~~G  127 (167)
T d1npya1          94 LAFPKAF---IDNASVAFDVVAMPV-ETP-FIRYAQARG  127 (167)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSSS-SCH-HHHHHHHTT
T ss_pred             ccccHhh---cCCcceEEEEeeccC-CCH-HHHHHHHCC
Confidence             234333   346789999977663 334 444444443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00055  Score=47.82  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |+|||+|.|..|+.++...+.+|+++.++++...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6999999999999999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.81  E-value=0.0018  Score=50.28  Aligned_cols=94  Identities=19%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC--c-ccCCHHHHhhcCCEEEEecCC-
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------SY--P-FYSNVCELAANCDILIICCGL-  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~~--~-~~~~l~e~l~~aDvV~l~~p~-  230 (300)
                      ++|+|||.|.+|.++|-.+...|.  ++..+|.+++...             ..  . ...+-.+.+++||+|+++... 
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            589999999999999999987775  7889997654311             11  0 111224689999999998742 


Q ss_pred             -Chh-hh-hcc--h----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          231 -TAE-TH-HMI--N----K---QVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       231 -~~~-t~-~li--~----~---~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                       .+. ++ .++  +    +   +.+....|.+++++++-  ++|.-.
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN--PvD~~t  125 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMT  125 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHH
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC--ChHHHH
Confidence             221 11 111  1    1   12334467899999976  455544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.0021  Score=51.83  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=44.5

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEEE-CCCCCCC------C-----------------CCcccCCHHHHhhcCCEEE
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSISYN-SRTKKPS------V-----------------SYPFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~~~-~~~~~~~------~-----------------~~~~~~~l~e~l~~aDvV~  225 (300)
                      +|||.|+|+||+.++|.+... +++|.+. ++.+...      .                 +.....++.++++++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999865 4677654 4443210      0                 1122346788889999999


Q ss_pred             EecCCCh
Q 022233          226 ICCGLTA  232 (300)
Q Consensus       226 l~~p~~~  232 (300)
                      -|.|.-.
T Consensus        83 ecTG~f~   89 (178)
T d1b7go1          83 DTTPNGV   89 (178)
T ss_dssp             ECCSTTH
T ss_pred             ECCCCcC
Confidence            9998643

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.70  E-value=0.0036  Score=52.83  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHH-hCCCEEEEE-CCCCC--------------------CCCCC--cccCCHHHHh-hc
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLD-AFGCSISYN-SRTKK--------------------PSVSY--PFYSNVCELA-AN  220 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~-~~g~~V~~~-~~~~~--------------------~~~~~--~~~~~l~e~l-~~  220 (300)
                      .|.|+||.|-|+|++|+.+|+.|. .+|++|+.. |.+..                    ....+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999986 579998755 33210                    00000  1123456654 57


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ||+++-|.-     .+.|+++..+.++- .+++-.+-+++. .++ .+.|.++.|.
T Consensus       109 ~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence            999988853     46677777777764 577888888864 445 5778888775

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.0021  Score=51.00  Aligned_cols=103  Identities=20%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC----CEEEE-ECCCCCCCCCCcccCCHHHHhhc--CCEEEEecCCChhhhhcchHHH
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG----CSISY-NSRTKKPSVSYPFYSNVCELAAN--CDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g----~~V~~-~~~~~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      .+|||||+|.||+..++.++...    ..+.. .++............+++|++..  .|+|++++|......  +....
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~--~~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHED--YIRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH--HHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccccc--ccccc
Confidence            38999999999999988887542    23332 22222111122234589999864  588999998654433  33344


Q ss_pred             HhcCCCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 022233          243 LSALGKEGVVINI-GRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       243 l~~mk~ga~lIn~-srg~~vd~~aL~~aL~~~~i~  276 (300)
                      ++.=+  .+++.- ---.+-+.++|.++.++.++.
T Consensus        86 l~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          86 LQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            44322  366653 123566778888876666553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00082  Score=53.30  Aligned_cols=84  Identities=19%  Similarity=0.346  Sum_probs=60.2

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---cCC---HHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---YSN---VCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~~~---l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |.+|.|+|.|.+|...++.++.+|+++++.+++.+..     .++..   +.+   .....+..|+++-++.....    
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~----  106 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN----  106 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC----
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh----
Confidence            7899999999999999999999999988887765532     12211   111   22234568999999864332    


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                       -...+..++++..++.++.
T Consensus       107 -~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         107 -LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             -HHHHHTTEEEEEEEEECCC
T ss_pred             -HHHHHHHHhcCCEEEEecc
Confidence             2355778889999999875

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.00088  Score=53.88  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             CEEEEEecChhHHH-HHHHHHhCC--CEEE-EECCCCCCCC------CC-cccCCHHHHhhc--CCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSL-VAKRLDAFG--CSIS-YNSRTKKPSV------SY-PFYSNVCELAAN--CDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~-~A~~l~~~g--~~V~-~~~~~~~~~~------~~-~~~~~l~e~l~~--aDvV~l~~p~~~~t~~  236 (300)
                      .+|||||+|.+|+. .+..++..+  ++|. ++|++.....      +. ..+.+++|+++.  .|+|++++|.....+ 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            48999999999987 477777654  4665 6787654321      22 346799999864  789999998654433 


Q ss_pred             cchHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCc
Q 022233          237 MINKQVLSALGKE-GVVINIG-RGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       237 li~~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~~~i  275 (300)
                       +-...++   .| .+++.-= --.+-+..+|.+..++.+.
T Consensus        83 -~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~  119 (181)
T d1zh8a1          83 -FIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEK  119 (181)
T ss_dssp             -HHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             -ccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCC
Confidence             2233333   23 4555431 2234455667777766554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00075  Score=54.21  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHH----h-----hcCCEEEEe
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCEL----A-----ANCDILIIC  227 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~----l-----~~aDvV~l~  227 (300)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++...     .++..     ..+..+.    .     ...|+|+-+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            37899999999999999999999998 799988865431     12210     1222221    1     126777777


Q ss_pred             cCCChhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          228 CGLTAETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       228 ~p~~~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      +.....     -+..++.+++|..++-++
T Consensus       108 vG~~~~-----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         108 TGDSRA-----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECC
T ss_pred             CCchhH-----HHHHHHHhcCCCEEEEEe
Confidence            653221     134556677777776665

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.60  E-value=0.00059  Score=53.32  Aligned_cols=94  Identities=16%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCC--EEEEECCCCCCCC--------CC------cccCCHHHHhhcCCEEEEecCC--
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSRTKKPSV--------SY------PFYSNVCELAANCDILIICCGL--  230 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~--------~~------~~~~~l~e~l~~aDvV~l~~p~--  230 (300)
                      .+|+||| .|.+|+++|-.|...|.  ++..+|.......        ..      ....+..+.+++||+|+++.-.  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            4899999 59999999999998776  6888887543210        00      1124667889999999997542  


Q ss_pred             Ch-hhhh-cc--h----HHH---HhcCCCCcEEEEcCCCcccCHHH
Q 022233          231 TA-ETHH-MI--N----KQV---LSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       231 ~~-~t~~-li--~----~~~---l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      .+ +++. ++  |    ++.   +....|.++++.++.  ++|.-.
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~t  124 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNSTI  124 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhhH
Confidence            22 1221 11  1    111   233378899999864  566543

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.58  E-value=0.0075  Score=47.56  Aligned_cols=98  Identities=13%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSV----------------SYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |.|++|++||=|+ +.++++..+..||+++.+..+..-...                ......+++++++.+|+|..-.=
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~   81 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW   81 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence            7899999999764 668888899999999998876432111                12345689999999999987431


Q ss_pred             CC-------hh-----hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          230 LT-------AE-----THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       230 ~~-------~~-----t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      ..       +.     ....++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~  131 (163)
T d1pvva2          82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  131 (163)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchh
Confidence            11       11     11356888999999999999886   56545543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.57  E-value=0.00087  Score=52.11  Aligned_cols=91  Identities=23%  Similarity=0.357  Sum_probs=56.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----cccCCHHHHhhcCCEEEEecCC-
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-------------SY----PFYSNVCELAANCDILIICCGL-  230 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-------------~~----~~~~~l~e~l~~aDvV~l~~p~-  230 (300)
                      ++|+|||.|.+|.++|-.+...+. ++..+|..+....             +.    ....+. +.+++||+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            699999999999999998887665 8888998664311             10    111233 457999999999853 


Q ss_pred             -Ch-hhh-hcc--h----HHH---HhcCCCCcEEEEcCCCcccCH
Q 022233          231 -TA-ETH-HMI--N----KQV---LSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       231 -~~-~t~-~li--~----~~~---l~~mk~ga~lIn~srg~~vd~  263 (300)
                       .+ .++ .++  +    ++.   +....|.++++.++.  ++|.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN--PvDv  123 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDA  123 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS--SHHH
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC--chHH
Confidence             21 122 121  1    122   233457889998754  4454

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.50  E-value=0.002  Score=55.04  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEEC-C-------CCCCCC--------------C-C--------cccC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNS-R-------TKKPSV--------------S-Y--------PFYS  212 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~-~-------~~~~~~--------------~-~--------~~~~  212 (300)
                      +.+|.|+||.|=|+|++|+.+|+.|...|++|+..+ .       ..-...              . .        ....
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            445889999999999999999999999999987542 2       111000              0 0        0000


Q ss_pred             CHHH-HhhcCCEEEEecCCChhhhhcchHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 022233          213 NVCE-LAANCDILIICCGLTAETHHMINKQVLSALGK-EG-VVINIGRGPIIDEQELVRCLVQGEIK  276 (300)
Q Consensus       213 ~l~e-~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~-ga-~lIn~srg~~vd~~aL~~aL~~~~i~  276 (300)
                      +.++ +-..||+++-|     .+.+.|+.+..+.++. ++ +++--+-+++.+ ++....|++++|.
T Consensus       111 ~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~-ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTN-EALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCH-HHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcch-HHHHHHHHhcCCE
Confidence            1122 23569988765     3566688777777753 34 667777777554 4555567776764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.0012  Score=51.97  Aligned_cols=83  Identities=14%  Similarity=0.260  Sum_probs=57.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHH----HhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCE----LAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e----~l~~aDvV~l~~p~~~~t  234 (300)
                      |.+|.|+|.|.||...++.++.+|.+|++.++++.+.     .++..     ..+..+    .....|.++.+.... .+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~  106 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN-SA  106 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCH-HH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccc-hH
Confidence            7799999999999999999999999999998875431     12211     122322    223456666665432 22


Q ss_pred             hhcchHHHHhcCCCCcEEEEcC
Q 022233          235 HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~s  256 (300)
                         + ...++.++++..++.++
T Consensus       107 ---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         107 ---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ---H-HHHHTTEEEEEEEEECC
T ss_pred             ---H-HHHHHHhcCCcEEEEEE
Confidence               2 35678889999999886

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.45  E-value=0.00076  Score=52.62  Aligned_cols=93  Identities=16%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC---cccCCHHHHhhcCCEEEEecCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPSV-------------SY---PFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~-------------~~---~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .||+|||.|.+|..+|-.+...|.  ++..+|.++....             +.   ....+. +.+++||+|+++.-..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            489999999999999999987775  7999998754211             00   112233 5689999999986432


Q ss_pred             --h-hhh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          232 --A-ETH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       232 --~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                        + +++ .++  |.       ..+....|.+++|.++  .++|.-.
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDvmt  125 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDIAT  125 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHHHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHHHH
Confidence              1 121 111  11       1233346888999987  4565443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.0018  Score=51.40  Aligned_cols=97  Identities=20%  Similarity=0.314  Sum_probs=62.1

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC--EEEEECCCCCCC-------------CCC---cccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC--SISYNSRTKKPS-------------VSY---PFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~-------------~~~---~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+...+|+|||.|.+|..+|-.|...|.  ++..+|.+....             .+.   ....+ .+.+.+||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEe
Confidence            3566799999999999999999997775  799999775321             011   11123 3556999999997


Q ss_pred             cCC--Ch-hhh-hcc--hHHH-------HhcCCCCcEEEEcCCCcccCHHH
Q 022233          228 CGL--TA-ETH-HMI--NKQV-------LSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       228 ~p~--~~-~t~-~li--~~~~-------l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                      ...  .+ +++ .++  |.+.       +....+.+++++++.  ++|.-.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN--PvDv~t  143 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN--PVDILT  143 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS--SHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC--cHHHHH
Confidence            643  11 222 122  2222       223468899999976  455433

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0081  Score=46.68  Aligned_cols=101  Identities=21%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC---C-CEEEEECCCCCCC--CC-----Cccc-CCHHHHhhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF---G-CSISYNSRTKKPS--VS-----YPFY-SNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~---g-~~V~~~~~~~~~~--~~-----~~~~-~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      |+|||||. |..|+.+.++|...   - .++..+..+....  ..     .... ..-.+.+.++|++++++|.....+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~-   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE-   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHH-
Confidence            58999998 99999999876543   2 2565554332221  10     0111 112245789999999998543322 


Q ss_pred             cchHHHHhcCCCCcEEEEcCCC---c--------ccCHHHHHHHHHhC
Q 022233          237 MINKQVLSALGKEGVVINIGRG---P--------IIDEQELVRCLVQG  273 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg---~--------~vd~~aL~~aL~~~  273 (300)
                       +-.. +..-..+.++||.|.-   .        =|+.+.|..++++|
T Consensus        81 -~~~~-~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          81 -IYPK-LRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             -HHHH-HHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             -hhHH-HHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence             2222 2223445688998843   2        14666787887764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.33  E-value=0.009  Score=46.57  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             cCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEE-CCCCCCC-------C--CCcccCCHHHHhhcCCEEEEecCCCh-
Q 022233          167 LGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYN-SRTKKPS-------V--SYPFYSNVCELAANCDILIICCGLTA-  232 (300)
Q Consensus       167 l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~-~~~~~~~-------~--~~~~~~~l~e~l~~aDvV~l~~p~~~-  232 (300)
                      |.|++|++||=+   ++.++++..+..+|+++.+. .+...+.       .  ......+++++++++|+|...---.. 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            579999999974   58999999999999987544 3322111       1  22345689999999999875421110 


Q ss_pred             -----h-----hhhcchHHHHhcCCCCcEEEEcC-CCc
Q 022233          233 -----E-----THHMINKQVLSALGKEGVVINIG-RGP  259 (300)
Q Consensus       233 -----~-----t~~li~~~~l~~mk~ga~lIn~s-rg~  259 (300)
                           .     ..-.++.+.++.++++++|.-+. ||.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~  118 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  118 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcC
Confidence                 0     11235788889999999998875 544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.0017  Score=51.04  Aligned_cols=84  Identities=13%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCC----HHHHhhcCCEEEEecCCChhh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSN----VCELAANCDILIICCGLTAET  234 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~----l~e~l~~aDvV~l~~p~~~~t  234 (300)
                      |.+|.|+|.|.||...++.++..|.+|++.++++.+.     .++..     ..+    +.+.-...|.++.+.. .+.+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~  106 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKPA  106 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHHH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHHH
Confidence            7799999999999999999999999999988765431     12211     112    3334455676776654 3332


Q ss_pred             hhcchHHHHhcCCCCcEEEEcCC
Q 022233          235 HHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       235 ~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                          -...+..++++..++.++-
T Consensus       107 ----~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         107 ----FQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             ----HHHHHHHEEEEEEEEECCC
T ss_pred             ----HHHHHHHhccCCceEeccc
Confidence                2466777888888888753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.0033  Score=50.19  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             CCEEEEEecChhHHHHHH---HHH--hC-CCEEEEECCCCCCCC-------------C----CcccCCHHHHhhcCCEEE
Q 022233          169 GKRVGIVGLGSIGSLVAK---RLD--AF-GCSISYNSRTKKPSV-------------S----YPFYSNVCELAANCDILI  225 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~---~l~--~~-g~~V~~~~~~~~~~~-------------~----~~~~~~l~e~l~~aDvV~  225 (300)
                      .++|+|||.|.+|.+.+-   .++  .+ +.++..+|.+++...             +    .....+.+|++++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  22 358999999764311             1    123458899999999999


Q ss_pred             EecCC
Q 022233          226 ICCGL  230 (300)
Q Consensus       226 l~~p~  230 (300)
                      ++.-.
T Consensus        82 ~~~~~   86 (171)
T d1obba1          82 NTAMV   86 (171)
T ss_dssp             ECCCT
T ss_pred             eeccc
Confidence            98643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.26  E-value=0.0035  Score=50.16  Aligned_cols=63  Identities=21%  Similarity=0.249  Sum_probs=43.1

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-CEEEE-ECCCCCCC------CC------------------CcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-CSISY-NSRTKKPS------VS------------------YPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~~-~~~~~~~~------~~------------------~~~~~~l~e~l~~aDv  223 (300)
                      ++|||-|||+||+.+.+.+...+ ++|.. .++.+...      .+                  .....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            48999999999999999887655 56654 44443210      00                  1112256778889999


Q ss_pred             EEEecCCCh
Q 022233          224 LIICCGLTA  232 (300)
Q Consensus       224 V~l~~p~~~  232 (300)
                      |+=|.|.-.
T Consensus        82 ViEcTG~f~   90 (171)
T d1cf2o1          82 VIDCTPEGI   90 (171)
T ss_dssp             EEECCSTTH
T ss_pred             EEEccCCCC
Confidence            999988643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.24  E-value=0.0016  Score=52.06  Aligned_cols=83  Identities=17%  Similarity=0.232  Sum_probs=56.7

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCcc-----cCCHHHHh------hcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-----SYPF-----YSNVCELA------ANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-----~~~~-----~~~l~e~l------~~aDvV~l~~p~~  231 (300)
                      |.+|.|+|.|.||...++.++.+|. +|++.++++++..     ++..     ..++.+.+      ...|+|+-++...
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~  107 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGS  107 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCH
Confidence            7799999999999999999999998 7899988754311     2211     12333322      1278888887643


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ..    + ...+..++++..++-++
T Consensus       108 ~~----~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         108 ET----L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TH----H-HHHHHHEEEEEEEEECC
T ss_pred             HH----H-HHHHHHHhcCCEEEEEe
Confidence            32    1 34456677888887776

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0019  Score=50.21  Aligned_cols=78  Identities=9%  Similarity=0.037  Sum_probs=51.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC---------CCCCc-------ccCCHHHH-hhcCCEEEEecCCChh
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP---------SVSYP-------FYSNVCEL-AANCDILIICCGLTAE  233 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~---------~~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~  233 (300)
                      .+-|+|+|.+|+.+++.|...|.+|++.+..++.         ..+..       ....|+++ +.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            5899999999999999999999999888765531         11221       11223332 6789999999886554


Q ss_pred             hhhcchHHHHhcCCCCc
Q 022233          234 THHMINKQVLSALGKEG  250 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga  250 (300)
                      +.  .-......+.+..
T Consensus        85 n~--~~~~~~r~~~~~~   99 (153)
T d1id1a_          85 NA--FVVLSAKDMSSDV   99 (153)
T ss_dssp             HH--HHHHHHHHHTSSS
T ss_pred             HH--HHHHHHHHhCCCC
Confidence            33  3334444554554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.0022  Score=50.77  Aligned_cols=61  Identities=8%  Similarity=-0.012  Sum_probs=42.1

Q ss_pred             CEEEEEecChhHHHHHHHHH-----hC-CCEEEEECCCCCCCC------------C--CcccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVGLGSIGSLVAKRLD-----AF-GCSISYNSRTKKPSV------------S--YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~-----~~-g~~V~~~~~~~~~~~------------~--~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +||+|||.|.+|.+.+-...     .+ +-++..+|.++....            .  .....+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            58999999999877764322     12 247999998654311            1  1223578899999999999875


Q ss_pred             C
Q 022233          230 L  230 (300)
Q Consensus       230 ~  230 (300)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.021  Score=44.65  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=67.2

Q ss_pred             cCCCEEEEEec--ChhHHHHHHHHHhCCCEEEEECCCCC-CCC---------------CCcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGL--GSIGSLVAKRLDAFGCSISYNSRTKK-PSV---------------SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~--G~IG~~~A~~l~~~g~~V~~~~~~~~-~~~---------------~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      |.|++|++||=  .++-.+.+..+..||+++....+..- +..               ......+++++++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            57999999994  57999999999999999988876421 110               1234568999999999998865


Q ss_pred             CCChh-------------hhhcchHHHHhcCCCCcEEEEcC---CCcccCHH
Q 022233          229 GLTAE-------------THHMINKQVLSALGKEGVVINIG---RGPIIDEQ  264 (300)
Q Consensus       229 p~~~~-------------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  264 (300)
                      --...             .....+......+|++++|.-+.   ||.=|+.+
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            32210             01123444455678899998875   56555544

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.98  E-value=0.0048  Score=49.38  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=42.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-CEEE-EECCCCCCC------C------------------CCcccCCHHHHhhcCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-CSIS-YNSRTKKPS------V------------------SYPFYSNVCELAANCDI  223 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-~~V~-~~~~~~~~~------~------------------~~~~~~~l~e~l~~aDv  223 (300)
                      .+|||.|||+||+.+++.+.... ++|. +.+..+...      .                  +.....++.++.+++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            48999999999999999987543 6765 445443210      0                  01112366777888999


Q ss_pred             EEEecCCCh
Q 022233          224 LIICCGLTA  232 (300)
Q Consensus       224 V~l~~p~~~  232 (300)
                      |+=|.|.-.
T Consensus        83 ViEcTG~f~   91 (172)
T d2czca2          83 IVDATPGGI   91 (172)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCCCC
Confidence            888887543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.95  E-value=0.017  Score=44.81  Aligned_cols=102  Identities=19%  Similarity=0.274  Sum_probs=59.9

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCC----CEEEEECCCCC-C-CCCC-----cc-cCCHHHHhhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFG----CSISYNSRTKK-P-SVSY-----PF-YSNVCELAANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g----~~V~~~~~~~~-~-~~~~-----~~-~~~l~e~l~~aDvV~l~~p~~~~t~~  236 (300)
                      ++||||| .|-.|+.+.++|....    .++..+..+.. . ....     .. ...-.+.+.++|++++|+|.... ..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s-~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT-EK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH-HH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH-HH
Confidence            5899998 4999999999876432    45654432221 1 1110     01 11123557999999999995433 22


Q ss_pred             cchHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHhCC
Q 022233          237 MINKQVLSALGKEGVVINIGRGP-----------IIDEQELVRCLVQGE  274 (300)
Q Consensus       237 li~~~~l~~mk~ga~lIn~srg~-----------~vd~~aL~~aL~~~~  274 (300)
                       +-..+.+ -...+++||.|.-=           =++.+.+.+++++|.
T Consensus        80 -~~~~l~~-~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 -VYPALRQ-AGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             -HHHHHHH-TTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             -HhHHHHH-cCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence             2233332 23446889987432           256677777776654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.90  E-value=0.0018  Score=53.88  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             CCEEEEEecChhHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CC-----cccCCHHHHhh--cCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSL-VAKRLDAF-GCSIS-YNSRTKKPSV------SY-----PFYSNVCELAA--NCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~-~A~~l~~~-g~~V~-~~~~~~~~~~------~~-----~~~~~l~e~l~--~aDvV~l~~p~~~  232 (300)
                      .-+|||||+|.||+. ++..++.. +++|. ++|++++...      +.     ..+.+++++++  +.|+|++++|...
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~  112 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  112 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhh
Confidence            458999999999974 66666654 67775 7788754311      11     23578899886  4789999998654


Q ss_pred             hhhhcchHHHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHhCC
Q 022233          233 ETHHMINKQVLSALGKE-GVVINI-GRGPIIDEQELVRCLVQGE  274 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~g-a~lIn~-srg~~vd~~aL~~aL~~~~  274 (300)
                      ...  +-...   |+.| .+++.- --..+-+...|.++.++.+
T Consensus       113 H~~--~~~~a---l~~gk~v~~EKPla~~~~e~~~l~~~a~~~~  151 (221)
T d1h6da1         113 HAE--FAIRA---FKAGKHVMCEKPMATSVADCQRMIDAAKAAN  151 (221)
T ss_dssp             HHH--HHHHH---HHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             hhh--HHHHh---hhcchhhhcCCCccCCHHHHHHHHHHHHhcC
Confidence            433  22222   3333 334332 1224445566666665543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.022  Score=44.87  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCcccCCHHHHhhcCCEEEEecC
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSV----------------SYPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      |.|++|++||=|+ +-.+++..+..+|+++.+..+..-...                ......++++.+..+|+|.....
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            7899999999764 446666667789999988776432211                12345789999999999998765


Q ss_pred             CChh------------hhhcchHHHHhcCCCCcEEEEcC
Q 022233          230 LTAE------------THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       230 ~~~~------------t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ....            ....++.+.++.++++++|.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          82 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             ecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            3321            11235778889999999999885

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.12  Score=42.44  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCC-----CC---CC-----------CCcccCCHHHHhhcCCE
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK-----KP---SV-----------SYPFYSNVCELAANCDI  223 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~-----~~---~~-----------~~~~~~~l~e~l~~aDv  223 (300)
                      |..|++.+|.|+|.|.-|..+|+.+...+. +++.+|+..     ..   ..           ......++.+++..+++
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~  100 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  100 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcce
Confidence            456889999999999999999999998887 688887641     10   00           11224578899999998


Q ss_pred             EEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 022233          224 LIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       224 V~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i~~  277 (300)
                      +...-     +.+++.++....|.+..++.=.|....--|.+  .+...|+..-
T Consensus       101 ~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~~G~ai~  147 (222)
T d1vl6a1         101 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LAREAGAFIV  147 (222)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HHHHTTCSEE
T ss_pred             ecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hheeccceEE
Confidence            77653     46778888899999999999999887755543  4455666543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0065  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      +++.|||.|.||-.+|..|..+|++|+.+.+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            69999999999999999999999999999887654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.72  E-value=0.0088  Score=46.24  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCC---CEEEEECCCCCCCC----C---CcccCCHHHHhhcCCEEEEecCCChhhhhcc
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFG---CSISYNSRTKKPSV----S---YPFYSNVCELAANCDILIICCGLTAETHHMI  238 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g---~~V~~~~~~~~~~~----~---~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li  238 (300)
                      ++|||||. |-.|+.+.+.|...+   .++.....+.....    .   ........+.+.++|++++++|.....+ +.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~-~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRA-HA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhh-hc
Confidence            58999987 999999999997433   36655432222111    0   0111112345788999999998443322 21


Q ss_pred             hHHHHhcCCCCcEEEEcCC
Q 022233          239 NKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       239 ~~~~l~~mk~ga~lIn~sr  257 (300)
                       ..   ..++|..+||.|.
T Consensus        82 -~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             -HH---HHHTTCEEEETTC
T ss_pred             -cc---cccCCceEEeech
Confidence             22   2457899999874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.004  Score=52.67  Aligned_cols=39  Identities=21%  Similarity=0.372  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          164 GSKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       164 g~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |.+|.||++.|-|. +.||+++|+.|...|++|...+|+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45689999999997 6799999999999999999998864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.69  E-value=0.0066  Score=45.16  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .++|.|||.|.||-.+|..|+.+|.+|+++.+....
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            479999999999999999999999999999887653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0065  Score=50.75  Aligned_cols=38  Identities=26%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|+||++.|-|.+. ||+++|+.|...|++|+..+|+.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            58999999999876 999999999999999999888754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0033  Score=53.02  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             cccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHh--hcCCEEEEecCCCh--hhhhcch
Q 022233          165 SKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELA--ANCDILIICCGLTA--ETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l--~~aDvV~l~~p~~~--~t~~li~  239 (300)
                      .+|+||++.|-|.+. ||+.+|+.|...|++|...+|+.+..      .++.+-+  ....+..+.+-.+.  +.+.++ 
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l------~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~-   75 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGL------EETAAKCKGLGAKVHTFVVDCSNREDIYSSA-   75 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHH-
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH-
Confidence            358999999999987 99999999999999999999875421      1111111  12345555554443  333344 


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 022233          240 KQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~srg  258 (300)
                      +...+.+.+=-++||.+..
T Consensus        76 ~~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          76 KKVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHHHHTCCCSEEEECCCC
T ss_pred             HHHHHHcCCCceeEeeccc
Confidence            2334455555566776543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.62  E-value=0.0068  Score=44.80  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.||-.+|..+..+|.+|+.+.+...-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            379999999999999999999999999998876653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.61  E-value=0.0066  Score=51.44  Aligned_cols=85  Identities=21%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhc--CCEEEEecCCCh--hhhhcchH
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAAN--CDILIICCGLTA--ETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~~--~t~~li~~  240 (300)
                      +|+||++.|.|. +.||+++|+.|+..|++|...+|+.+..      ....+.+++  .++..+.+-.+.  +.+.++ +
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l------~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~-~   75 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKEL------DECLEIWREKGLNVEGSVCDLLSRTERDKLM-Q   75 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCCceEEEeecCCHHHHHHHH-H
Confidence            489999999994 5699999999999999999998875321      112222221  344444444443  333443 2


Q ss_pred             HHHhcC-CCCcEEEEcCC
Q 022233          241 QVLSAL-GKEGVVINIGR  257 (300)
Q Consensus       241 ~~l~~m-k~ga~lIn~sr  257 (300)
                      +..+.. .+-.++||.+-
T Consensus        76 ~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          76 TVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHHHTTSCCCEEEECCC
T ss_pred             HHHHHhCCCcEEEecccc
Confidence            334444 34567888653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.59  E-value=0.0064  Score=50.18  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=32.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ||+|.|||.|.-|-..|..|+..|++|+++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            68999999999999999999999999999987654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.58  E-value=0.0074  Score=50.99  Aligned_cols=86  Identities=16%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             cCCCEEEEEec-C--hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHH
Q 022233          167 LGGKRVGIVGL-G--SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVL  243 (300)
Q Consensus       167 l~g~~vgIiG~-G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l  243 (300)
                      |+||++.|.|. |  -||.++|+.|...|++|+..+|+.+..   .....+.+....+.+...-+....+...+++ +..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~---~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-~~~   78 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE---KRVRPIAQELNSPYVYELDVSKEEHFKSLYN-SVK   78 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH---HHHHHHHHHTTCCCEEECCTTCHHHHHHHHH-HHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHhhCCceeEeeecccchhhHHHHHH-HHH
Confidence            88999999996 4  499999999999999999988864311   1122334445566666555555555555553 333


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +.+.+--++||.+
T Consensus        79 ~~~g~id~lV~na   91 (274)
T d2pd4a1          79 KDLGSLDFIVHSV   91 (274)
T ss_dssp             HHTSCEEEEEECC
T ss_pred             HHcCCCCeEEeec
Confidence            4444444555443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.56  E-value=0.0029  Score=49.27  Aligned_cols=59  Identities=20%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCC--C-------------C--Cc---ccCCHHHHhhcCCEEEE
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPS--V-------------S--YP---FYSNVCELAANCDILII  226 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~--~-------------~--~~---~~~~l~e~l~~aDvV~l  226 (300)
                      ++|+|||. |.+|+++|..+...|.  ++..+|+.+...  .             .  ..   ...+-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999998885  888888764210  0             0  00   01223467899999999


Q ss_pred             ec
Q 022233          227 CC  228 (300)
Q Consensus       227 ~~  228 (300)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.55  E-value=0.0045  Score=49.15  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCE-EEEECCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCS-ISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~-V~~~~~~~~  203 (300)
                      .+++|.|||.|..|-..|..|+..|++ |+++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            378999999999999999999999994 988887654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.53  E-value=0.0046  Score=49.09  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEE-EEECCCCCCC-----CCCc-----ccCCHHHHhh-----cCCEEEEecCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSI-SYNSRTKKPS-----VSYP-----FYSNVCELAA-----NCDILIICCGLT  231 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V-~~~~~~~~~~-----~~~~-----~~~~l~e~l~-----~aDvV~l~~p~~  231 (300)
                      .|.+|.|+|.|.||...++.++.+|.++ .+.++++.+.     .++.     ...++.+.++     ..|+|+-++...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            3789999999999999999999999854 5666655321     1221     1123444332     269999887633


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      + +    .+..+..++++..++.++-
T Consensus       108 ~-~----~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         108 E-I----LKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             H-H----HHHHHHTEEEEEEEEECCC
T ss_pred             H-H----HHHHHhcccCceEEEEEee
Confidence            2 2    2456778899999988764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0089  Score=44.21  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      ++|.|||.|.+|-.+|..|+.+|.+|+.+.+.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0054  Score=44.23  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             cCCCEEEEEecChhH-HHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGLGSIG-SLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~G~IG-~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      -+.+++=|||.|.+| +++|+.|+..|++|.++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            357899999999999 5569999999999999998643

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0045  Score=49.06  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhC-CCEEE-EECCCCCCCC-------------CCcccCCHHHHhhcCCEEEEec
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAF-GCSIS-YNSRTKKPSV-------------SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~-g~~V~-~~~~~~~~~~-------------~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+|+|+|+ |+||+.+++.+... ++++. ++++...+..             +.....++++++..+|+|+=-.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            48999995 99999999988764 67764 5666433211             2233467888899999988764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.51  E-value=0.017  Score=45.81  Aligned_cols=62  Identities=10%  Similarity=0.038  Sum_probs=42.1

Q ss_pred             CEEEEEecChhH--HHHHHHHHh---CC-CEEEEECCCCCCCC---------------CC----cccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGLGSIG--SLVAKRLDA---FG-CSISYNSRTKKPSV---------------SY----PFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~G~IG--~~~A~~l~~---~g-~~V~~~~~~~~~~~---------------~~----~~~~~l~e~l~~aDvV  224 (300)
                      ++|.|||.|..|  ..++..++.   +. -++..+|.++....               +.    ....+..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            589999999876  445555543   22 37889998764210               11    1235778899999999


Q ss_pred             EEecCCC
Q 022233          225 IICCGLT  231 (300)
Q Consensus       225 ~l~~p~~  231 (300)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9998644

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0059  Score=47.41  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CEEEEEec-ChhHHHHHHHHH-h--CCCEEEEECCCCCCC--------CC--C----cccCCHHHHhhcCCEEEEecCC-
Q 022233          170 KRVGIVGL-GSIGSLVAKRLD-A--FGCSISYNSRTKKPS--------VS--Y----PFYSNVCELAANCDILIICCGL-  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~-~--~g~~V~~~~~~~~~~--------~~--~----~~~~~l~e~l~~aDvV~l~~p~-  230 (300)
                      ++|+|||. |.+|+++|-.|+ .  ++-++..+|..+...        ..  .    ....+..+.+++||+|+++.-. 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998875 3  346898898754210        00  0    0112335678999999998632 


Q ss_pred             -Chh-hh-hcc--hH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 022233          231 -TAE-TH-HMI--NK-------QVLSALGKEGVVINIGRGPIIDEQE  265 (300)
Q Consensus       231 -~~~-t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a  265 (300)
                       .+. ++ .++  |.       +.+....|.+++|.++.  ++|.-.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~m~  125 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTTV  125 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchHHH
Confidence             221 11 122  11       22334468899999964  455443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.47  E-value=0.026  Score=44.74  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc------cC-CHHHHh-----hcCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF------YS-NVCELA-----ANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~------~~-~l~e~l-----~~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.||...++.++.+|. +|++.++++.+.     .++..      .+ ..+...     ...|+++-++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            37899999999999999999999998 677888876542     12211      11 222222     45799999876


Q ss_pred             CChhhhhcchHHHHhcCCCC-cEEEEcCC
Q 022233          230 LTAETHHMINKQVLSALGKE-GVVINIGR  257 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~g-a~lIn~sr  257 (300)
                      ..+.     ....+..+++| ..++-++-
T Consensus       108 ~~~~-----~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         108 TAQT-----LKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECCC
T ss_pred             cchH-----HHHHHHHhhcCCeEEEecCC
Confidence            4332     24566777875 67777763

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.43  E-value=0.026  Score=41.22  Aligned_cols=60  Identities=15%  Similarity=0.059  Sum_probs=46.9

Q ss_pred             CCEEEEEec----------ChhHHHHHHHHHhCCCEEEEECCCCCCCC---CCcccCCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGL----------GSIGSLVAKRLDAFGCSISYNSRTKKPSV---SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~----------G~IG~~~A~~l~~~g~~V~~~~~~~~~~~---~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .++|||+|+          ..-.-.+.+.|...|++|.+||+.-....   ......++++++..||+|++..
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEcC
Confidence            358999998          56678899999999999999999765432   2334568999999999776543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.38  E-value=0.0098  Score=42.21  Aligned_cols=60  Identities=18%  Similarity=0.250  Sum_probs=41.5

Q ss_pred             CCEEEEEecChhHH-HHHHHHHhCCCEEEEECCCCCCC------CCCccc-CCHHHHhhcCCEEEEec
Q 022233          169 GKRVGIVGLGSIGS-LVAKRLDAFGCSISYNSRTKKPS------VSYPFY-SNVCELAANCDILIICC  228 (300)
Q Consensus       169 g~~vgIiG~G~IG~-~~A~~l~~~g~~V~~~~~~~~~~------~~~~~~-~~l~e~l~~aDvV~l~~  228 (300)
                      +++|=|||.|-+|. ++|+.|+..|++|.++|+...+.      .+...+ ..-.+.+.++|+|+..-
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            46889999999998 68999999999999999875321      122211 11123346678777653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.36  E-value=0.013  Score=45.70  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=63.4

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCCCCCCC------------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRTKKPSV------------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~~~~~~------------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      |.|++|+|||=   ++..++++..+..+|+++.+..+..-...            ......+++++++.+|+|....-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            78999999998   68999999999999999988776432211            1223578999999999988765432


Q ss_pred             hhh-----------hhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AET-----------HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~t-----------~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ...           .-.++.+.++.+++.+++.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            210           0123455666677777776665

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.36  E-value=0.012  Score=43.38  Aligned_cols=38  Identities=21%  Similarity=0.083  Sum_probs=33.9

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      ..+++|.|||.|.||-.+|..|+.+|.+|+.+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            34789999999999999999999999999999886543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.34  E-value=0.026  Score=44.77  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCc------ccCC-HHH---Hh--hcCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-----SYP------FYSN-VCE---LA--ANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-----~~~------~~~~-l~e---~l--~~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++++..     ++.      ..++ .++   +.  ...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            47899999999999999999999996 8999998776521     221      1111 222   22  45899998876


Q ss_pred             CChhhhhcchHHHHhcC-CCCcEEEEcCCC
Q 022233          230 LTAETHHMINKQVLSAL-GKEGVVINIGRG  258 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~m-k~ga~lIn~srg  258 (300)
                      ..+..     ...+..+ +.+..+|.++-.
T Consensus       109 ~~~~~-----~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         109 HLETM-----IDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             CHHHH-----HHHHTTSCTTTCEEEECSCC
T ss_pred             chHHH-----HHHHHHhhcCCeEEEEEEcc
Confidence            43322     2333445 444788888743

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.32  E-value=0.0062  Score=48.23  Aligned_cols=82  Identities=20%  Similarity=0.324  Sum_probs=57.0

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc---cCCHH-H--HhhcCCEEEEecCCChhhh
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF---YSNVC-E--LAANCDILIICCGLTAETH  235 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~---~~~l~-e--~l~~aDvV~l~~p~~~~t~  235 (300)
                      .|.+|.|.|. |.+|+...+.++.+|++|++.+++++..     .++..   +.+.. +  ....+|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            3779999995 9999999999999999998887765432     13321   12221 1  2356898888654  21  


Q ss_pred             hcchHHHHhcCCCCcEEEEcC
Q 022233          236 HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~s  256 (300)
                        + .+.++.++++..+|.++
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              2 45678899999999885

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.011  Score=44.22  Aligned_cols=35  Identities=37%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      +++.|||.|.||-.+|..++.+|.+|+.+.+...-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            69999999999999999999999999999887653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.30  E-value=0.01  Score=44.17  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.||-.+|..++.+|.+|+...+...-
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            479999999999999999999999999988776543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.29  E-value=0.011  Score=45.57  Aligned_cols=87  Identities=16%  Similarity=0.284  Sum_probs=54.2

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCC--EEEEECCCCCC--C------------CC--Cc-ccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSRTKKP--S------------VS--YP-FYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~~~~~--~------------~~--~~-~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+|+||| .|.+|+.+|-.+...|.  ++..+|....+  .            ..  .. ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            3899999 69999999999998776  78888864221  0            00  11 11233 45789999999754


Q ss_pred             --CCh-hhh-hcc--hH-------HHHhcCCCCcEEEEcCC
Q 022233          230 --LTA-ETH-HMI--NK-------QVLSALGKEGVVINIGR  257 (300)
Q Consensus       230 --~~~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  257 (300)
                        ..+ +++ .++  |.       ..+....|.++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence              222 121 111  11       12344568899999854

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.29  E-value=0.038  Score=44.20  Aligned_cols=90  Identities=8%  Similarity=-0.006  Sum_probs=64.0

Q ss_pred             cCCCEEEEEec--ChhHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCcccCCHHHHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGL--GSIGSLVAKRLDAFGCSISYNSRTKKPSV----------------SYPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~--G~IG~~~A~~l~~~g~~V~~~~~~~~~~~----------------~~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      |.|.+|++||=  .++..+++..+..||+++.+..+..-...                ......+++++++.+|+|..-.
T Consensus         3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~   82 (185)
T d1dxha2           3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV   82 (185)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence            77999999995  48999999999999999998877431110                1234578999999999998754


Q ss_pred             CCC----hh---------h-hhcchHHHHhcCCCCcEEEEcC
Q 022233          229 GLT----AE---------T-HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       229 p~~----~~---------t-~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      --+    ..         . ..+..+.....++++++|.-+.
T Consensus        83 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          83 WVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            311    11         0 1223444556788999998886

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.065  Score=42.60  Aligned_cols=92  Identities=25%  Similarity=0.318  Sum_probs=59.5

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC-EEEEE-CCCCCCCC---------C--CcccCCHHHHhhcCCEEEEecCCChhhh
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC-SISYN-SRTKKPSV---------S--YPFYSNVCELAANCDILIICCGLTAETH  235 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~-~V~~~-~~~~~~~~---------~--~~~~~~l~e~l~~aDvV~l~~p~~~~t~  235 (300)
                      .+|||+|. |-.|+.+.+.|..+-. ++.+. +++.....         .  .....+.+++..++|+|++++|....- 
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~-   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY-   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH-
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH-
Confidence            48999995 8999999999997653 66544 33222110         0  011346677888999999999976442 


Q ss_pred             hcchHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 022233          236 HMINKQVLSALGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       236 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                           +..... ++..+||.|..==.+....++
T Consensus        81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          81 -----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             -----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             -----HHHHhh-ccceEEecCccccccchhhHH
Confidence                 233333 578999998655554444443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.042  Score=47.43  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=55.8

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHH----HHhhcCCEEEEecCCChhhhhcchH
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVC----ELAANCDILIICCGLTAETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~----e~l~~aDvV~l~~p~~~~t~~li~~  240 (300)
                      +|.||++.|-|.+. ||+++|+.|...|++|.+.++..+..........++    ++-...-.+...+-..+..+.++. 
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-   82 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK-   82 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH-
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH-
Confidence            58999999999875 999999999999999999988765432111111222    222334444444444444555554 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 022233          241 QVLSALGKEGVVINIG  256 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~s  256 (300)
                      ...+.+.+=-++||.+
T Consensus        83 ~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNA   98 (302)
T ss_dssp             HHHHHTSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            3444444444667754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.14  E-value=0.0079  Score=45.04  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS  205 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~  205 (300)
                      .+++.|||.|.||-.+|..+..+|++|++..+.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4699999999999999999999999999998876543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.14  E-value=0.013  Score=43.72  Aligned_cols=36  Identities=28%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      ++++.|||.|.+|-.+|..|+..|.+|+++.+.+..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            689999999999999999999999999999887654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.13  E-value=0.0035  Score=49.62  Aligned_cols=87  Identities=20%  Similarity=0.280  Sum_probs=59.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc-----cCCHHHHhh-----cCCEEEEecCCCh
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF-----YSNVCELAA-----NCDILIICCGLTA  232 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~l~-----~aDvV~l~~p~~~  232 (300)
                      |.+|.|+|.|.+|...++.++.+|. +|++.++++++.     .+...     .+..++..+     ..|+|+.++....
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~  112 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA  112 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence            7899999999999999999998886 667777765421     12211     112333332     3788998876433


Q ss_pred             hhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          233 ETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       233 ~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                      ..     ...+..++++..++.++-++-
T Consensus       113 ~~-----~~a~~~l~~~G~iv~~G~~~~  135 (172)
T d1h2ba2         113 TV-----DYTPYLLGRMGRLIIVGYGGE  135 (172)
T ss_dssp             HH-----HHGGGGEEEEEEEEECCCSSC
T ss_pred             HH-----HHHHHHHhCCCEEEEEeCccc
Confidence            21     345678899999999886654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.10  E-value=0.014  Score=43.64  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.2

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++|.|||.|.+|-.+|..|+..|.+|++..+.+..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4789999999999999999999999999999876543

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.09  E-value=0.042  Score=44.51  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=69.0

Q ss_pred             HHHHHHHhCCCEEEEECCCCCC---------CCCCcccCCHHHHhhcCCEEEE-ecCCChhhhhcchHHHHhcCCCCcEE
Q 022233          183 LVAKRLDAFGCSISYNSRTKKP---------SVSYPFYSNVCELAANCDILII-CCGLTAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       183 ~~A~~l~~~g~~V~~~~~~~~~---------~~~~~~~~~l~e~l~~aDvV~l-~~p~~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      ..++.|...|++|.+=.-....         ..++....+.++++.++|+|+. ..|...+    .+.+.++.||+|.++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            5788899999999884322211         1144445678899999998875 4454433    233467889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 022233          253 INIGRGPIIDEQELVRCLVQGEIKGAGLDVF  283 (300)
Q Consensus       253 In~srg~~vd~~aL~~aL~~~~i~~a~LDV~  283 (300)
                      |..--  .....++.++|.+.++...++|..
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            98753  567788999999999999988865

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.08  E-value=0.0083  Score=50.78  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|+||++.|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58899999999875 999999999999999999888653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.04  E-value=0.0096  Score=50.01  Aligned_cols=38  Identities=24%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCCC
Q 022233          165 SKLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+|+||++.|-|.+   .||+++|++|...|++|.+.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46999999999975   499999999999999998877753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.017  Score=43.68  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEE-EECC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSR  200 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~  200 (300)
                      ++|+|+|+ |+||+.+++.+...|+++. .+++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            58999996 9999999999999999875 4444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.013  Score=47.02  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ....|+|+|||.|..|-+.|..|+..|++|++|++.+.
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            36689999999999999999999999999999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.98  E-value=0.034  Score=46.14  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .|+|.|.|. |.||+.+++.|...|++|.+.+|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            578999996 999999999999999999999886543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.016  Score=52.73  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC------C-------CC-----------------Cc-----
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP------S-------VS-----------------YP-----  209 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~------~-------~~-----------------~~-----  209 (300)
                      .|++++|.|||+|.+|..+++.|...|. ++..+|...-.      .       .+                 ..     
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            3789999999999999999999999898 78887753211      0       00                 00     


Q ss_pred             --ccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          210 --FYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       210 --~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                        .....+++++++|+|+.++- +.+++..++.......
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~  151 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLL  151 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhh
Confidence              01123568899999988875 5667888887766543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.91  E-value=0.0098  Score=44.48  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      +++.|||.|.||-.+|..++.+|.+|+.+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999887654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.017  Score=48.27  Aligned_cols=37  Identities=32%  Similarity=0.461  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +|+||++.|-|.+ .||+++|+.|...|++|...+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999976 599999999999999999988864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.86  E-value=0.003  Score=47.69  Aligned_cols=82  Identities=10%  Similarity=0.028  Sum_probs=49.8

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc-------ccCCHHHH-hhcCCEEEEecCCChhhhh
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP-------FYSNVCEL-AANCDILIICCGLTAETHH  236 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~-------~~~~l~e~-l~~aDvV~l~~p~~~~t~~  236 (300)
                      |.+-|+|+|.+|+.+++.|++.+  |.+.+.++...     .+..       ....|.++ +.+|+.++++.+....+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            46889999999999999997654  55555544321     1211       11223332 688999999887655443 


Q ss_pred             cchHHHHhcCCCCc-EEEEc
Q 022233          237 MINKQVLSALGKEG-VVINI  255 (300)
Q Consensus       237 li~~~~l~~mk~ga-~lIn~  255 (300)
                       +-......+.|.. +++-+
T Consensus        78 -~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 -HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             -HHHHHHHHHCSSSCEEEEC
T ss_pred             -HHHHHHHHHCCCceEEEEE
Confidence             3344455565554 44443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.84  E-value=0.0081  Score=50.31  Aligned_cols=81  Identities=19%  Similarity=0.325  Sum_probs=53.6

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhc--CCEEEEecCCC--hhhhhcchH
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAAN--CDILIICCGLT--AETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~--aDvV~l~~p~~--~~t~~li~~  240 (300)
                      .|.||++.|.|.+. ||+++|+.|...|++|...+|+.+.         ++++.++  .+++.+.+-++  ++.+.++. 
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~-   71 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---------LAEAVAALEAEAIAVVADVSDPKAVEAVFA-   71 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---------HHHHHHTCCSSEEEEECCTTSHHHHHHHHH-
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---------HHHHHHHcCCceEEEEecCCCHHHHHHHHH-
Confidence            38899999999887 9999999999999999998886432         2233222  35555555433  33444443 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 022233          241 QVLSALGKEGVVINIG  256 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~s  256 (300)
                      +..+.+.+=-++||.+
T Consensus        72 ~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          72 EALEEFGRLHGVAHFA   87 (241)
T ss_dssp             HHHHHHSCCCEEEEGG
T ss_pred             HHHHHhCCccEecccc
Confidence            3344445555677764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.018  Score=48.19  Aligned_cols=37  Identities=38%  Similarity=0.510  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .|+||++.|.|.+. ||+++|+.|...|++|...+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            48999999999775 99999999999999999998864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.78  E-value=0.028  Score=46.88  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .|+||++.|-|.+ .||+++|+.|...|++|...+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999975 599999999999999999998864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.78  E-value=0.033  Score=46.66  Aligned_cols=63  Identities=21%  Similarity=0.148  Sum_probs=45.4

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC-------cccCCHHHHhhcCCEEEEe
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-------------SY-------PFYSNVCELAANCDILIIC  227 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-------------~~-------~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+||.|.| .|.||+.+++.|...|++|.+..|+.....             ++       ....++.+.++.++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            45799999 599999999999999999999888654321             11       1122345677888888877


Q ss_pred             cCCC
Q 022233          228 CGLT  231 (300)
Q Consensus       228 ~p~~  231 (300)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            6643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.78  E-value=0.014  Score=45.54  Aligned_cols=89  Identities=11%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             CCCEEEEEec---ChhHHHHHHHHHhCCCEEEEECCCCCC--CCCCcccCCHHHHhhcCCEEEEecCCChh------hh-
Q 022233          168 GGKRVGIVGL---GSIGSLVAKRLDAFGCSISYNSRTKKP--SVSYPFYSNVCELAANCDILIICCGLTAE------TH-  235 (300)
Q Consensus       168 ~g~~vgIiG~---G~IG~~~A~~l~~~g~~V~~~~~~~~~--~~~~~~~~~l~e~l~~aDvV~l~~p~~~~------t~-  235 (300)
                      .|.+|++||=   +++..+++..+..+|+++.+..+..-.  ........+++++++++|+|.....-+..      .+ 
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r~q~e~~~~~~~~~~   81 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEG   81 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeEEEEcccccchhhHH
Confidence            4889999997   689999999999999999877664321  12234457899999999998765332111      00 


Q ss_pred             ----hcchHHHHhcCCCCcEEEEcC
Q 022233          236 ----HMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       236 ----~li~~~~l~~mk~ga~lIn~s  256 (300)
                          ..++.+.+..++++++|.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~i~MH~L  106 (151)
T d2at2a2          82 YLNKYGLTVERAERMKRHAIIMHPA  106 (151)
T ss_pred             hhhhhcchhhhhhhcccCeEEecCC
Confidence                122445566678888887764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.73  E-value=0.022  Score=42.26  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=31.9

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++++.|||.|.+|-.+|..|+.+|.+|+++.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            46999999999999999999999999999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.70  E-value=0.017  Score=44.46  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=30.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCC--CEEEEECCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTK  202 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~  202 (300)
                      .||+|.|||.|.+|-.+|..|+..+  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999999877  5888888765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.69  E-value=0.028  Score=47.35  Aligned_cols=83  Identities=22%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCC--hhhhhcchH
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLT--AETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~--~~t~~li~~  240 (300)
                      +|.||++.|-|.+. ||+++|+.|...|++|...+++.+..      ..+.+.++  ..++..+.+-.+  ++.+.++..
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l------~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~   75 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREAL------EKAEASVREKGVEARSYVCDVTSEEAVIGTVDS   75 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence            48899999999865 99999999999999999998864321      11222222  235666555444  334555543


Q ss_pred             HHHhcCCCCcEEEEc
Q 022233          241 QVLSALGKEGVVINI  255 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~  255 (300)
                       ..+.+.+=-++||.
T Consensus        76 -~~~~~g~iDilVnn   89 (260)
T d1zema1          76 -VVRDFGKIDFLFNN   89 (260)
T ss_dssp             -HHHHHSCCCEEEEC
T ss_pred             -HHHHhCCCCeehhh
Confidence             33333333355655

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.67  E-value=0.017  Score=43.42  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.||-.+|..++.+|.+|+...+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            469999999999999999999999999999886543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.67  E-value=0.016  Score=48.63  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|.||++.|-|.+ .||+++|+.|...|++|.+.+++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5889999999986 4999999999999999999888643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.66  E-value=0.018  Score=42.30  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.+|-.+|..|+.+|.+|+.+.+.+.-
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            479999999999999999999999999999887553

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.65  E-value=0.014  Score=49.03  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|+||++.|-|.+ .||+++|+.|...|++|.+.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999985 5999999999999999999988653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.60  E-value=0.017  Score=48.67  Aligned_cols=86  Identities=16%  Similarity=0.198  Sum_probs=55.7

Q ss_pred             cccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCCh--hhhhcch
Q 022233          165 SKLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLTA--ETHHMIN  239 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~--~t~~li~  239 (300)
                      .+|+||++.|-|.+. ||+++|+.|...|++|...+|+.+...     ...+++.+  ..++..+.+-.+.  +.+.++.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~-----~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~   79 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV-----EVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ   79 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH-----HHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-----HHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence            368999999999876 999999999999999999888754321     11222322  3456666655443  3444443


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 022233          240 KQVLSALGKEGVVINIG  256 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~s  256 (300)
                       +..+...+=-++||.+
T Consensus        80 -~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          80 -QIDADLGPISGLIANA   95 (260)
T ss_dssp             -HHHHHSCSEEEEEECC
T ss_pred             -HHHHHhCCCcEecccc
Confidence             3334444445677765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.58  E-value=0.025  Score=42.73  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .+++|.|||.|.+|-.+|..|+..|.+|+++.+.+..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3689999999999999999999999999999987654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.55  E-value=0.024  Score=46.64  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.4

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      +.++|.|||.|..|..+|..|+..|.+|.++++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4679999999999999999999999999999986553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.50  E-value=0.018  Score=46.97  Aligned_cols=34  Identities=35%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      -++|.|||.|.+|-+.|..|+..|.+|+++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5689999999999999999999999999998754

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.036  Score=43.16  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=62.0

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCCC-EEEEECCCCCCCC------------CCcccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFGC-SISYNSRTKKPSV------------SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~------------~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      |.|.+|++||=   |++..+++..+..+|. .+.+..+......            ......++++++.++|+|...---
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999997   6699999999999975 5566655322211            123357889999999999875332


Q ss_pred             Chh----------hhhcchHHHHhcCCCCcEEEEcC
Q 022233          231 TAE----------THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       231 ~~~----------t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ...          ....++.+.++.++++++|.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            211          11223567778888999888775

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.017  Score=48.37  Aligned_cols=83  Identities=16%  Similarity=0.288  Sum_probs=51.2

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCC--ChhhhhcchHHH
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGL--TAETHHMINKQV  242 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~--~~~t~~li~~~~  242 (300)
                      +|+||++.|-|.+ .||+++|+.|...|++|...+|+.+..      ..+.+.+ ..++..+.+-.  .++.+.++++ .
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l------~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~-~   72 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGA------QAISDYL-GANGKGLMLNVTDPASIESVLEK-I   72 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH------HHHHHHH-GGGEEEEECCTTCHHHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH------HHHHHHh-CCCCcEEEEEecCHHHhhhhhhh-h
Confidence            3789999998865 599999999999999999988864321      1122222 12344444433  3445555543 3


Q ss_pred             HhcCCCCcEEEEcC
Q 022233          243 LSALGKEGVVINIG  256 (300)
Q Consensus       243 l~~mk~ga~lIn~s  256 (300)
                      .+...+=-++||.+
T Consensus        73 ~~~~g~iDilVnnA   86 (243)
T d1q7ba_          73 RAEFGEVDILVNNA   86 (243)
T ss_dssp             HHHTCSCSEEEECC
T ss_pred             hcccCCcceehhhh
Confidence            34444334667765

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.38  E-value=0.047  Score=43.26  Aligned_cols=93  Identities=14%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhC-CCEEEEE-CCCCCCCCC------------C-----cccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAF-GCSISYN-SRTKKPSVS------------Y-----PFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~-g~~V~~~-~~~~~~~~~------------~-----~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      .+|+|+| .|-.|+.+.+.|... .+++... .+......+            .     ....+......++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 899999999999987 5576543 221111100            0     111234455678999999998


Q ss_pred             CChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          230 LTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      .....+  +   .-...+.|..+||.|..--.+....+
T Consensus        82 ~~~s~~--~---~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          82 HEVSHD--L---APQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             HHHHHH--H---HHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             chhHHH--H---hhhhhhcCceeecccccccccccccc
Confidence            543322  2   12224578999999866555444443

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.32  E-value=0.024  Score=44.07  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCC---EEEEECCCCCCCC-------CCcccCCHHHHhhcCCEEEEecCCChhhhhc
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGC---SISYNSRTKKPSV-------SYPFYSNVCELAANCDILIICCGLTAETHHM  237 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~---~V~~~~~~~~~~~-------~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~l  237 (300)
                      |=+|||||. |-.|+.+.+.|....+   ++.+...+.....       ........++...+.|++++++|.....+  
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~--   78 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAK--   78 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHH--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhh--
Confidence            348999998 9999999999987753   4444432221111       01112334456788999999998433322  


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                         ......++|..+||.|.
T Consensus        79 ---~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          79 ---YAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ---HHHHHHHTTCEEEECSS
T ss_pred             ---HHhhhccccceehhcCh
Confidence               12234467999999983

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.27  E-value=0.011  Score=49.95  Aligned_cols=38  Identities=29%  Similarity=0.384  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|.||++.|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999875 999999999999999999888643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.21  E-value=0.061  Score=42.37  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             CCEEEEEecChhHHHHH--HHHHh-CC---CEEEEECCCCCCCC-------------C----CcccCCHHHHhhcCCEEE
Q 022233          169 GKRVGIVGLGSIGSLVA--KRLDA-FG---CSISYNSRTKKPSV-------------S----YPFYSNVCELAANCDILI  225 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A--~~l~~-~g---~~V~~~~~~~~~~~-------------~----~~~~~~l~e~l~~aDvV~  225 (300)
                      ..+|.|||.|..|...+  ..++. ..   -+|..+|..++...             +    .....+..|++++||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            34899999999886533  33332 22   37889998764311             1    122457889999999999


Q ss_pred             EecCC
Q 022233          226 ICCGL  230 (300)
Q Consensus       226 l~~p~  230 (300)
                      ++.-.
T Consensus        83 itag~   87 (167)
T d1u8xx1          83 AHIRV   87 (167)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.023  Score=47.35  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=32.5

Q ss_pred             cCCCEEEEEecCh---hHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGLGS---IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~G~---IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |.||++.|-|.+.   ||+++|+.|...|++|+..+++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8899999999865   99999999999999999888764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.17  E-value=0.021  Score=47.90  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ..|+|.|||.|..|-..|..|+..|++|+++++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            357999999999999999999999999999987653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.15  E-value=0.033  Score=48.06  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .+||+|.|.| .|-||+.+++.|...|++|.+++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999999 789999999999999999999988654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.058  Score=47.02  Aligned_cols=32  Identities=31%  Similarity=0.251  Sum_probs=27.8

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      |++.|.| .|-||+.+++.|...|++|++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4566778 8999999999999999999999884

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.14  E-value=0.041  Score=47.64  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             CCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCC--------CCCc-----cc---CCHHHHhhcCCEEEEecCCC
Q 022233          169 GKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPS--------VSYP-----FY---SNVCELAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~--------~~~~-----~~---~~l~e~l~~aDvV~l~~p~~  231 (300)
                      .|||.|+| .|.||+.+++.|.+.|++|.+..|++...        .++.     ..   ..++.++..+|.+++..+..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~   82 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   82 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence            68999999 59999999999999999999887765421        1111     11   12456778888888776644

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.012  Score=49.13  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          166 KLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       166 ~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      .|++++|.|||+|.+|..+|..|...|. +++.+|..
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5999999999999999999999999998 78888753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.02  Score=45.03  Aligned_cols=87  Identities=23%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCcc-----cCCHHHHh------hcCCEEEEecCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYPF-----YSNVCELA------ANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~~-----~~~l~e~l------~~aDvV~l~~p~  230 (300)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++.     .++..     ..++.+.+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            4789999995 9999999999999999998877654321     12211     12333322      23688887763 


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCCcc
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRGPI  260 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg~~  260 (300)
                       ..    .-...+..|+++..+|.++..+.
T Consensus       107 -~~----~~~~~~~~l~~~G~iv~~G~~~~  131 (174)
T d1yb5a2         107 -NV----NLSKDLSLLSHGGRVIVVGSRGT  131 (174)
T ss_dssp             -HH----HHHHHHHHEEEEEEEEECCCCSC
T ss_pred             -HH----HHHHHHhccCCCCEEEEEecCCC
Confidence             22    12456788999999999975554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.10  E-value=0.023  Score=47.68  Aligned_cols=85  Identities=22%  Similarity=0.400  Sum_probs=53.4

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCC--hhhhhcchH
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLT--AETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~--~~t~~li~~  240 (300)
                      +|+||++.|-|.+. ||+++|+.|...|++|.+.+|+.++..     ...+++.+  ..+++.+.+-.+  ++.+.++. 
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~-----~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~-   75 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS-----EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE-   75 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-----HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-----HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-
Confidence            58899999999865 999999999999999999988654211     11222222  345666655544  33444543 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 022233          241 QVLSALGKEGVVINIG  256 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~s  256 (300)
                      +..+.+.+=-++||.+
T Consensus        76 ~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          76 AVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            3333333334566654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.013  Score=49.58  Aligned_cols=38  Identities=32%  Similarity=0.502  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|+||++.|.|.+. ||+++|+.|...|++|+..+|+.+
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            49999999999886 999999999999999999988753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.00  E-value=0.066  Score=44.81  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCC-h--hhhhcchHH
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLT-A--ETHHMINKQ  241 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~-~--~t~~li~~~  241 (300)
                      +|.||++.|-|.+. ||.++|+.|...|++|+...|+.+..   .....+........+.+..+-++ +  +.+.++++ 
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-   77 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP---TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK-   77 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH---HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH-
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH---HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHH-
Confidence            48899999999985 99999999999999987765554321   11122333344455666665554 2  34445533 


Q ss_pred             HHhcCCCCcEEEEcC
Q 022233          242 VLSALGKEGVVINIG  256 (300)
Q Consensus       242 ~l~~mk~ga~lIn~s  256 (300)
                      ..+...+=-++||.+
T Consensus        78 ~~~~~g~iDilvnnA   92 (254)
T d1sbya1          78 IFDQLKTVDILINGA   92 (254)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHcCCCCEEEeCC
Confidence            233333323566654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.95  E-value=0.024  Score=47.77  Aligned_cols=87  Identities=22%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCC--hhhhhcchHHHH
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLT--AETHHMINKQVL  243 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~--~~t~~li~~~~l  243 (300)
                      |+||++.|-|.+. ||+++|+.|...|++|.+.+++.+...  .....+.+.-....++.+.+-.+  ++.+.+++ +..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~--~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~-~~~   78 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE--ASKAAVLETAPDAEVLTTVADVSDEAQVEAYVT-ATT   78 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH-HHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHH-HHH
Confidence            7899999999874 999999999999999999988654210  00011122223456666655443  34445553 333


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +.+.+=-++||.+
T Consensus        79 ~~~G~iDiLVnnA   91 (258)
T d1iy8a_          79 ERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHSCCSEEEECC
T ss_pred             HHhCCCCEEEECC
Confidence            3333334666653

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.065  Score=43.80  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCC--EEEEECCCCCCCC------------CCcccCCHHHHhhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGC--SISYNSRTKKPSV------------SYPFYSNVCELAANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~------------~~~~~~~l~e~l~~aDvV~l~~p~~  231 (300)
                      ..+++|.|.| .|.||+.+++.|...|.  +|.+.+|++....            ......++.+.++.+|+++.++..+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            5688999998 69999999999988785  8988888654321            1112345667789999999887543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.88  E-value=0.035  Score=46.02  Aligned_cols=58  Identities=16%  Similarity=0.226  Sum_probs=43.6

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~  230 (300)
                      |+|.|.|. |-||+.+++.|...|++|+..+|..-.   .....+++++++  ..|+|+-+.-.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeeccc
Confidence            58999997 999999999999999999999886432   222345667775  45887765443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.84  E-value=0.095  Score=41.14  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=53.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCcc------cC-CHHHHh-----hcCCEEEEecC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYPF------YS-NVCELA-----ANCDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~~------~~-~l~e~l-----~~aDvV~l~~p  229 (300)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++..+.     .++..      .+ ..++..     ...|+++-++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            37899999999999999999999997 788888876542     12221      11 133333     24799998876


Q ss_pred             CChhhhhcchHHHHhcC-CCCcEEEEcC
Q 022233          230 LTAETHHMINKQVLSAL-GKEGVVINIG  256 (300)
Q Consensus       230 ~~~~t~~li~~~~l~~m-k~ga~lIn~s  256 (300)
                      ..+..+     ..+..+ +++..++-++
T Consensus       107 ~~~~~~-----~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2         107 RIETMM-----NALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             CHHHHH-----HHHHTBCTTTCEEEECC
T ss_pred             CchHHH-----HHHHHHHHhcCceEEEE
Confidence            443322     333344 4445555554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.82  E-value=0.059  Score=46.77  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             CCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-----C-------CcccCCHHHHhhcCCEEEEec
Q 022233          168 GGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----S-------YPFYSNVCELAANCDILIICC  228 (300)
Q Consensus       168 ~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~-------~~~~~~l~e~l~~aDvV~l~~  228 (300)
                      .+|+|.|.| .|-||+.+++.|...|++|++.++......     .       ......+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            689999998 899999999999999999999876543321     0       011123445677899877655

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.78  E-value=0.067  Score=44.31  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=35.3

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPS  205 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~  205 (300)
                      .|.||++.|-|.+. ||+++|+.|...|++|...+|+.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            38899999999885 99999999999999999998876543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.77  E-value=0.023  Score=46.58  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ++|.|||.|..|-..|..|+..|++|++++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5799999999999999999999999999988654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.76  E-value=0.047  Score=45.97  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|.||++.|.|.+ .||+++|+.|...|++|...+++.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999965 4999999999999999999888643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.70  E-value=0.011  Score=50.03  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|+||++.|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999876 999999999999999999988653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.68  E-value=0.084  Score=41.21  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~  204 (300)
                      .|.+|.|+|.|-+|...+..++.+|. +|++.++++++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            37899999999999999999999996 88888887654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.65  E-value=0.033  Score=48.20  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +.|+|.|||.|..|-.+|..|+..|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.61  E-value=0.21  Score=39.55  Aligned_cols=89  Identities=13%  Similarity=0.202  Sum_probs=54.5

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCC-CEEEEE-CCCCCCCC-----------C-CcccCCHHHHhhcCCEEEEecCCChh
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFG-CSISYN-SRTKKPSV-----------S-YPFYSNVCELAANCDILIICCGLTAE  233 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~-~~~~~~~~-----------~-~~~~~~l~e~l~~aDvV~l~~p~~~~  233 (300)
                      ..+|||||. |-.|+.+.+.|...- +++.+. +++.....           . .......++...++|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            348999995 899999999999864 466544 33222111           0 01112234567899999999996543


Q ss_pred             hhhcchHHHHhcCCCCcEEEEcCCCcccCH
Q 022233          234 THHMINKQVLSALGKEGVVINIGRGPIIDE  263 (300)
Q Consensus       234 t~~li~~~~l~~mk~ga~lIn~srg~~vd~  263 (300)
                            .+....+.....+|+.+.+--...
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~~  108 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLRD  108 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCSC
T ss_pred             ------HHHHHHHHhcCcccccchhhhccc
Confidence                  334444555556666665554433

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.56  E-value=0.04  Score=45.67  Aligned_cols=66  Identities=20%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             CCCEEEEEecChhH----HHHHHHHHhC--CCEEE-EECCCCCCC---------CCCcccCCHHHHhhc--CCEEEEecC
Q 022233          168 GGKRVGIVGLGSIG----SLVAKRLDAF--GCSIS-YNSRTKKPS---------VSYPFYSNVCELAAN--CDILIICCG  229 (300)
Q Consensus       168 ~g~~vgIiG~G~IG----~~~A~~l~~~--g~~V~-~~~~~~~~~---------~~~~~~~~l~e~l~~--aDvV~l~~p  229 (300)
                      +-.+|||||+|.+|    +.....++..  +++|. ++|++....         .....+.++++++++  -|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            34699999999854    4444455543  56776 678765321         123346799999864  679999988


Q ss_pred             CChh
Q 022233          230 LTAE  233 (300)
Q Consensus       230 ~~~~  233 (300)
                      ....
T Consensus        95 ~~~h   98 (237)
T d2nvwa1          95 VPEH   98 (237)
T ss_dssp             HHHH
T ss_pred             Ccch
Confidence            5443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.55  E-value=0.045  Score=44.86  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      -.+++|.|||.|..|-..|..|+..|++|+++++...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            5789999999999999999999999999999987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.31  E-value=0.036  Score=46.20  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             cCCCEEEEEec-Ch--hHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GS--IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~--IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |+||++.|.|. |.  ||+++|+.|+..|++|+..+++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            89999999995 54  99999999999999998877654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.31  E-value=0.042  Score=46.70  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          165 SKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       165 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .+|+||++.|-| .|.||+++|+.|...|++|++.+|+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            479999999998 678999999999999999999988753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.24  E-value=0.044  Score=45.94  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +|+||++.|-|.+ -||+++|+.|...|++|...+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999965 599999999999999999998864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.24  E-value=0.032  Score=47.35  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +|+||++.|-|. +.||+++|+.|...|++|...+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999997 5899999999999999999988864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.17  E-value=0.026  Score=45.19  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCE--EEEECCCCCCC----CC-------CcccCCHHHHhhcCCEEEEecC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCS--ISYNSRTKKPS----VS-------YPFYSNVCELAANCDILIICCG  229 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~--V~~~~~~~~~~----~~-------~~~~~~l~e~l~~aDvV~l~~p  229 (300)
                      +||.|.| .|.||+.+++.|...|.+  |....|++...    ..       .....++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899999 699999999999988865  55555654211    11       1122355678899999887754

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.066  Score=42.55  Aligned_cols=91  Identities=8%  Similarity=0.005  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEecC--hhHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CcccCCHHHHhhcCCEEEEe
Q 022233          166 KLGGKRVGIVGLG--SIGSLVAKRLDAFGCSISYNSRTKKPSV--------------S--YPFYSNVCELAANCDILIIC  227 (300)
Q Consensus       166 ~l~g~~vgIiG~G--~IG~~~A~~l~~~g~~V~~~~~~~~~~~--------------~--~~~~~~l~e~l~~aDvV~l~  227 (300)
                      .+.|.+|++||=|  ++..+++..+..+|+++.+..+..-...              +  .....+++++++++|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            3678899999965  7999999999999999998876432110              1  12457899999999999875


Q ss_pred             cCCC----h---hh-------hhcchHHHHhcCCCCcEEEEcC
Q 022233          228 CGLT----A---ET-------HHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       228 ~p~~----~---~t-------~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      .=..    .   ..       ...++.......++.++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4321    1   00       1233455566678899998875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.10  E-value=0.15  Score=40.27  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=61.4

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHh---CCC----EEEEECCCCCCC------------C-----CCcccCCHHHHhhcCCE
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDA---FGC----SISYNSRTKKPS------------V-----SYPFYSNVCELAANCDI  223 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~---~g~----~V~~~~~~~~~~------------~-----~~~~~~~l~e~l~~aDv  223 (300)
                      -.+|.|+|. |.||+.++-+|+.   ||.    .+..+|......            .     ......+..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 9999999999885   453    455667644211            0     11234678899999999


Q ss_pred             EEEecCCC--h-hhh-hcc--h----HH---HHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 022233          224 LIICCGLT--A-ETH-HMI--N----KQ---VLSA-LGKEGVVINIGRGPIIDEQELVR  268 (300)
Q Consensus       224 V~l~~p~~--~-~t~-~li--~----~~---~l~~-mk~ga~lIn~srg~~vd~~aL~~  268 (300)
                      |++..-..  + +++ .++  |    ++   .+.. .+++++++=++  .++|..+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            99986322  1 111 111  1    11   2233 45677777775  4799888764

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.01  E-value=0.19  Score=42.11  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             cCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcC
Q 022233          167 LGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSAL  246 (300)
Q Consensus       167 l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~m  246 (300)
                      ..|++|++||+-    +..+.++..|+++.+++++++...  .....-++++.+||+|+++-  +.-..+-+ ..+++..
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd--~p~~~~~~lLp~aD~viiTG--sTlvN~Tl-~~LL~~~  190 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD--YPLPASEFILPECDYVYITC--ASVVDKTL-PRLLELS  190 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC--EEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHHT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC--CCchHHHHhhhcCCEEEEEe--chhhcCCH-HHHHHhC
Confidence            469999999874    466667778899999999875422  11234567899999999863  22122222 4567777


Q ss_pred             CCCcEEEEcCCC------------------cccCHHHHHHHHHhCC
Q 022233          247 GKEGVVINIGRG------------------PIIDEQELVRCLVQGE  274 (300)
Q Consensus       247 k~ga~lIn~srg------------------~~vd~~aL~~aL~~~~  274 (300)
                      |+...+|=++=.                  .++|.+.+.+.+.+|.
T Consensus       191 ~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         191 RNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             TTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             CcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            777665544321                  1367777777776654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.01  E-value=0.044  Score=43.00  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC-----CCCCc-----ccCCHHHHh------hcCCEEEEecCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP-----SVSYP-----FYSNVCELA------ANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~-----~~~~~-----~~~~l~e~l------~~aDvV~l~~p~~  231 (300)
                      |.+|.|.|. |.+|...++.++.+|++|++..++.+.     ..++.     ...++.+.+      ...|+|+-++.. 
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~-  104 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-  104 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc-
Confidence            779999885 999999999999999999877665432     11221     112343332      347888887752 


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +.     ....++.+++++.+|.++.
T Consensus       105 ~~-----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         105 EA-----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             HH-----HHHHHHTEEEEEEEEECSC
T ss_pred             hH-----HHHHHHHhcCCCEEEEEcc
Confidence            21     2456788899999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.014  Score=49.27  Aligned_cols=84  Identities=24%  Similarity=0.385  Sum_probs=52.4

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCCh--hhhhcchH
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLTA--ETHHMINK  240 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~--~t~~li~~  240 (300)
                      +|+||++.|-|.+ .||+++|+.|...|++|...+|+.+..      ..+.+.++  ..+++.+.+-.+.  +.+.+++ 
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~-   80 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAA------NHVVDEIQQLGGQAFACRCDITSEQELSALAD-   80 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH-
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHHcCCcEEEEEccCCCHHHHHHHHH-
Confidence            4899999999985 599999999999999999988864321      11112122  2356666665543  3344443 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 022233          241 QVLSALGKEGVVINIG  256 (300)
Q Consensus       241 ~~l~~mk~ga~lIn~s  256 (300)
                      ...+.+.+=-++||.+
T Consensus        81 ~~~~~~g~iDilvnnA   96 (255)
T d1fmca_          81 FAISKLGKVDILVNNA   96 (255)
T ss_dssp             HHHHHHSSCCEEEECC
T ss_pred             HHHHHcCCCCEeeeCC
Confidence            3333333334666664

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.99  E-value=0.015  Score=45.59  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCc-----ccCCH-HHHh-----hcCCEEEEecCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYP-----FYSNV-CELA-----ANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~-----~~~~l-~e~l-----~~aDvV~l~~p~  230 (300)
                      |.+|.|+|. |.+|...++.++..|. +|++.+++++..     .++.     ...+. ++..     ...|+++-+...
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~  107 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNS  107 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCC
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccccc
Confidence            679999995 9999999999998885 888888765431     1221     11222 2332     237888887753


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCC---cccCHHHHHHHHHhCCceE
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRG---PIIDEQELVRCLVQGEIKG  277 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg---~~vd~~aL~~aL~~~~i~~  277 (300)
                      .+..+     ..+..++++..++.++-.   -.++...+.  +++-++.|
T Consensus       108 ~~~~~-----~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~--~k~i~i~G  150 (170)
T d1jvba2         108 EKTLS-----VYPKALAKQGKYVMVGLFGADLHYHAPLIT--LSEIQFVG  150 (170)
T ss_dssp             HHHHT-----TGGGGEEEEEEEEECCSSCCCCCCCHHHHH--HHTCEEEE
T ss_pred             chHHH-----hhhhhcccCCEEEEeccccCccccCHHHHH--hCCcEEEE
Confidence            33222     346778999999888632   235554442  34444443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.096  Score=43.79  Aligned_cols=86  Identities=17%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             cccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh----cCCEEEEecCCC--hhhhhc
Q 022233          165 SKLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA----NCDILIICCGLT--AETHHM  237 (300)
Q Consensus       165 ~~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~----~aDvV~l~~p~~--~~t~~l  237 (300)
                      ..|+||++.|.|.+ .||+++|+.|...|++|++.+|+...      ...+.+.++    ...++.+.+-++  ++.+.+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~------l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~   79 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN------IEELAAECKSAGYPGTLIPYRCDLSNEEDILSM   79 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH------HHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH------HHHHHHHHHhcCCCceEEEEEccCCCHHHHHHH
Confidence            45999999999976 69999999999999999998886432      112222222    235666666544  345555


Q ss_pred             chHHHHhcCCCCcEEEEcCC
Q 022233          238 INKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~sr  257 (300)
                      ++ ...+.+.+=-++||.+-
T Consensus        80 v~-~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          80 FS-AIRSQHSGVDICINNAG   98 (257)
T ss_dssp             HH-HHHHHHCCCSEEEECCC
T ss_pred             HH-HHHHhcCCCCEEEeccc
Confidence            54 33333333346677763

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.83  E-value=0.031  Score=46.89  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +|+||++.|-|. +.||+++|+.|...|++|...+|+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            388999999998 5799999999999999999988864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.099  Score=44.78  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=55.3

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHh---hcCCEEEEecCCC--hhhhhcch
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELA---ANCDILIICCGLT--AETHHMIN  239 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l---~~aDvV~l~~p~~--~~t~~li~  239 (300)
                      .|.||++.|-|.+. ||+++|+.|...|++|.+.+|+.+....  ....+.+.+   ....++.+.+-.+  ++.+.++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~--~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   86 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS--AADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   86 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH--HHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence            49999999999765 9999999999999999999886532100  001111111   2346666666544  33445553


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 022233          240 KQVLSALGKEGVVINIG  256 (300)
Q Consensus       240 ~~~l~~mk~ga~lIn~s  256 (300)
                       +..+.+.+=-++||.+
T Consensus        87 -~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          87 -STLDTFGKINFLVNNG  102 (297)
T ss_dssp             -HHHHHHSCCCEEEECC
T ss_pred             -HHHHHhCCeEEEEeec
Confidence             3334444445777765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.77  E-value=0.049  Score=46.09  Aligned_cols=37  Identities=38%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEecC---hhHHHHHHHHHhCCCEEEEECCC
Q 022233          165 SKLGGKRVGIVGLG---SIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G---~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      .+|+||++.|-|.+   -||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            36999999999986   59999999999999999877653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.65  E-value=0.073  Score=44.88  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=52.1

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhhc-----CCEEEEecCCCh--hhhhc
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAAN-----CDILIICCGLTA--ETHHM  237 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~~-----aDvV~l~~p~~~--~t~~l  237 (300)
                      +|+||++.|.|.+ .||+++|+.|...|++|...+|+.+..      ..+.+.+++     ..+..+.+-.+.  +.+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l------~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~   75 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERL------EETRQIILKSGVSEKQVNSVVADVTTEDGQDQI   75 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCCCCceEEEEccCCCHHHHHHH
Confidence            3889999999975 599999999999999999998865321      112222222     245555554443  34445


Q ss_pred             chHHHHhcCCCCcEEEEcC
Q 022233          238 INKQVLSALGKEGVVINIG  256 (300)
Q Consensus       238 i~~~~l~~mk~ga~lIn~s  256 (300)
                      ++ +..+.+.+=-++||.+
T Consensus        76 ~~-~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          76 IN-STLKQFGKIDVLVNNA   93 (272)
T ss_dssp             HH-HHHHHHSCCCEEEECC
T ss_pred             HH-HHHHHhCCceEEEeCC
Confidence            53 3333333334666654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.61  E-value=0.069  Score=44.54  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHh-hcCCEEEEecCCCh--hhhhcchHH
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELA-ANCDILIICCGLTA--ETHHMINKQ  241 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l-~~aDvV~l~~p~~~--~t~~li~~~  241 (300)
                      +|+||++.|-|.+ .||+++|+.|...|++|...+|+.+..      ..+.+.+ ....+..+.+-.+.  +.+.++. +
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~-~   75 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVG------EKAAKSVGTPDQIQFFQHDSSDEDGWTKLFD-A   75 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHCCTTTEEEEECCTTCHHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHhCCCCcEEEEEccCCCHHHHHHHHH-H
Confidence            4889999999965 599999999999999999988864321      1111112 22345555554432  3444443 2


Q ss_pred             HHhcCCCCcEEEEcC
Q 022233          242 VLSALGKEGVVINIG  256 (300)
Q Consensus       242 ~l~~mk~ga~lIn~s  256 (300)
                      ..+.+.+=-++||.+
T Consensus        76 ~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          76 TEKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHHSSCCEEEECC
T ss_pred             HHHHhCCceEEEecc
Confidence            223333334667665

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.46  E-value=0.022  Score=44.29  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             EEEEEe-cChhHHHHHHHHHhCCC-------EEEEECCCCCCCC-----------------CCcccCCHHHHhhcCCEEE
Q 022233          171 RVGIVG-LGSIGSLVAKRLDAFGC-------SISYNSRTKKPSV-----------------SYPFYSNVCELAANCDILI  225 (300)
Q Consensus       171 ~vgIiG-~G~IG~~~A~~l~~~g~-------~V~~~~~~~~~~~-----------------~~~~~~~l~e~l~~aDvV~  225 (300)
                      +|.||| .|.+|+.+|-.|..-++       .+..+|.......                 ......+..+.+++||+|+
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV   84 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI   84 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence            999999 59999999998874332       4567776543210                 0122357789999999999


Q ss_pred             EecCC--Ch-hhh--------hcc---hHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          226 ICCGL--TA-ETH--------HMI---NKQVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       226 l~~p~--~~-~t~--------~li---~~~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      ++.-.  .+ +++        .++   .....+..++..++|.++  .++|.-+.+
T Consensus        85 itag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs--NPvD~mt~v  138 (154)
T d5mdha1          85 LVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG--NPANTNCLT  138 (154)
T ss_dssp             ECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred             EecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec--CcHHHHHHH
Confidence            98642  21 111        111   112223234555667775  467776654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.44  E-value=0.13  Score=39.74  Aligned_cols=79  Identities=22%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCcc-------cCCHHHHh-----hcCCEEEEecCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPSV-----SYPF-------YSNVCELA-----ANCDILIICCGL  230 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~~-----~~~~-------~~~l~e~l-----~~aDvV~l~~p~  230 (300)
                      |.+|.|+|.|-+|...++.++.+|. +|+..++++....     ++..       ..+..+.+     ..+|+|+-++..
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~  108 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGN  108 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCC
Confidence            7799999999999999999999997 5677777654321     2211       12233332     347888888753


Q ss_pred             ChhhhhcchHHHHhcCCCCcEE
Q 022233          231 TAETHHMINKQVLSALGKEGVV  252 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~l  252 (300)
                      .. +    .+..+..+++|..+
T Consensus       109 ~~-~----~~~~~~~~~~g~~~  125 (176)
T d2fzwa2         109 VK-V----MRAALEACHKGWGV  125 (176)
T ss_dssp             HH-H----HHHHHHTBCTTTCE
T ss_pred             HH-H----HHHHHHhhcCCcee
Confidence            22 1    23455556666433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.078  Score=43.74  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=31.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      ..+|.|||.|.-|-..|..|+..|++|+++..+..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45799999999999999999999999999987654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.25  E-value=0.14  Score=38.77  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             EEEEEe-cChhHHHHHHHHHh-CCCEEE-EECCCCCCCCCCcccCCHHHHh-hcCCEEEEec
Q 022233          171 RVGIVG-LGSIGSLVAKRLDA-FGCSIS-YNSRTKKPSVSYPFYSNVCELA-ANCDILIICC  228 (300)
Q Consensus       171 ~vgIiG-~G~IG~~~A~~l~~-~g~~V~-~~~~~~~~~~~~~~~~~l~e~l-~~aDvV~l~~  228 (300)
                      ||+|+| .|+||+.+++.+.. -++++. .+|+..          ++.++. ..+|+|+=-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------PLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------CTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------chhhhccccCCEEEEcc
Confidence            699999 69999999998764 567765 555432          222222 4678776653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.21  E-value=0.028  Score=47.12  Aligned_cols=38  Identities=32%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|.||++.|.|.+ .||+++|+.|...|++|...+|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4789999999985 6999999999999999999988643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.06  E-value=0.076  Score=43.71  Aligned_cols=62  Identities=21%  Similarity=0.294  Sum_probs=44.4

Q ss_pred             cCCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCC--CC-----CcccCCHH---HHhhcCCEEEEec
Q 022233          167 LGGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPS--VS-----YPFYSNVC---ELAANCDILIICC  228 (300)
Q Consensus       167 l~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~--~~-----~~~~~~l~---e~l~~aDvV~l~~  228 (300)
                      |+||++.|-|.+ .||+++|+.|...|++|...+|+.+..  .+     .......+   +-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            789999999975 599999999999999999998875321  11     11112233   3345678888764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.94  E-value=0.023  Score=48.08  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          165 SKLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       165 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+|+||++.|-|. +.||+++|+.|...|++|.+.+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999985 5799999999999999999888764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.87  E-value=0.066  Score=42.39  Aligned_cols=33  Identities=36%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~  203 (300)
                      +|.|||.|..|-+.|..|+..|+ +|++++++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            69999999999999999999997 6999988654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.62  E-value=0.061  Score=42.48  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=26.4

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSR  200 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~  200 (300)
                      ++|||=|||+||+.+.|.|..-+.+|.+.+.
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence            4899999999999999998877888876553

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.50  E-value=0.076  Score=44.65  Aligned_cols=39  Identities=28%  Similarity=0.379  Sum_probs=34.3

Q ss_pred             ccccCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          164 GSKLGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       164 g~~l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ..+|+||++.|-| .+.||+++|+.|...|++|.+.+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4569999999999 67899999999999999998876654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.43  E-value=0.097  Score=43.83  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          166 KLGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       166 ~l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +|+||++.|-|. +.||+++|+.|...|++|...+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            478999999886 57999999999999999999988743

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.40  E-value=0.079  Score=44.31  Aligned_cols=36  Identities=36%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |+||++.|-|.+. ||+++|+.|...|++|.+.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            7899999888766 99999999999999999998864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.36  E-value=0.094  Score=41.27  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      -|.|||.|..|...|..|+..|.+|++++++..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            489999999999999999999999999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.36  E-value=0.1  Score=44.87  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC--CEEEEECCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG--CSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g--~~V~~~~~~~~  203 (300)
                      |+|+|||.|.-|-.+|..|+..|  .+|.+++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999997655  59999988754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.11  E-value=0.086  Score=41.47  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=59.9

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-----CCCc------ccCCHHHHh-----hcCCEEEEecCC
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-----VSYP------FYSNVCELA-----ANCDILIICCGL  230 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-----~~~~------~~~~l~e~l-----~~aDvV~l~~p~  230 (300)
                      .|.+|.|.|. |.+|+..++.++..|++|++..++++..     .++.      .....++.+     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            3889999998 6699999999999999999887765421     1211      111222222     45899999874 


Q ss_pred             ChhhhhcchHHHHhcCCCCcEEEEcCCC
Q 022233          231 TAETHHMINKQVLSALGKEGVVINIGRG  258 (300)
Q Consensus       231 ~~~t~~li~~~~l~~mk~ga~lIn~srg  258 (300)
                       .++    -.+.++.++++..++.++..
T Consensus       108 -~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             -chh----hhhhhhhccCCCeEEeecce
Confidence             222    25678999999999999753

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.09  E-value=0.35  Score=38.20  Aligned_cols=63  Identities=22%  Similarity=0.250  Sum_probs=41.8

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCC--EEEEECCCCCCCCC-C-cccCCHHH----HhhcCCEEEEecCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGC--SISYNSRTKKPSVS-Y-PFYSNVCE----LAANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~--~V~~~~~~~~~~~~-~-~~~~~l~e----~l~~aDvV~l~~p~~  231 (300)
                      -|+|.|.|. |.||+.+++.|...|.  +|....|++..... . ....++.+    +....|.|+.|+-.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            479999998 9999999999999897  56666655433211 1 11223333    334579999886444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.02  E-value=0.12  Score=43.04  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |.||++.|-| -+.||+++|+.|...|++|.+.+++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999 567999999999999999999888754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.29  Score=40.37  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.0

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      |.||++.|.|. +.||+++|+.|...|++|+..+|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            88999888875 5799999999999999999988874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.92  E-value=0.045  Score=45.81  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             CEEEE-EecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCCh--hhhhcchHHHH
Q 022233          170 KRVGI-VGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLTA--ETHHMINKQVL  243 (300)
Q Consensus       170 ~~vgI-iG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~~--~t~~li~~~~l  243 (300)
                      |||.+ -|.+ .||+++|+.|...|++|...+|+.+..      ..+.+.++  ..+++.+.+-.+.  +.+.++. ...
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l------~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~-~~~   73 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATA------KAVASEINQAGGHAVAVKVDVSDRDQVFAAVE-QAR   73 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH-HHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH-HHH
Confidence            45544 4654 599999999999999999998865321      11112121  2355555554443  3334443 333


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +.+.+=-++||.+
T Consensus        74 ~~~g~iDilVnnA   86 (255)
T d1gega_          74 KTLGGFDVIVNNA   86 (255)
T ss_dssp             HHTTCCCEEEECC
T ss_pred             HHhCCccEEEecc
Confidence            4444334567654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.18  Score=37.32  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |.-.+||+|+|||.|..+-.-|..|..+.-+|++..|...
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            5557899999999999999999999999999998877654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.11  Score=43.25  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      +.||++.|-|.+. ||+++|+.|...|++|...+|+.+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999854 999999999999999999888754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.71  E-value=0.17  Score=38.47  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             cCCCEEEEE--ecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIV--GLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIi--G~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .-++.+.|+  |.|.||-.+|..|+.+|.+|++..+.+.
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            446777887  8899999999999999999999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.61  E-value=0.13  Score=37.39  Aligned_cols=36  Identities=28%  Similarity=0.184  Sum_probs=29.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHh---CCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDA---FGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~---~g~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.+|-.+|..+.+   .|.+|+.+.+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            4799999999999999987665   48899988776543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=90.53  E-value=0.11  Score=42.75  Aligned_cols=32  Identities=22%  Similarity=0.188  Sum_probs=29.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .|.|||.|.+|.++|..|+..|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.51  E-value=0.1  Score=37.56  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      ..+.+||+|+|||.|.-|..+|.-|...+-++++..++
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            45689999999999999999999999877776554443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.49  E-value=0.095  Score=40.48  Aligned_cols=30  Identities=37%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEE
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISY  197 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~  197 (300)
                      .+++|.|||.|.+|-.+|..|+.+|.++.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            478999999999999999999999986544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.31  E-value=0.15  Score=41.55  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP  204 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~  204 (300)
                      +|.|||.|.-|..+|..|+..|. +|.++++.+..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            89999999999999999999996 89999887654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.25  E-value=0.031  Score=43.38  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCC-------EEEEECCCCCCC------------C-----CCcccCCHHHHhhcCCEE
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGC-------SISYNSRTKKPS------------V-----SYPFYSNVCELAANCDIL  224 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~-------~V~~~~~~~~~~------------~-----~~~~~~~l~e~l~~aDvV  224 (300)
                      ++|.|+|. |.+|+.+|-.|...+.       ....++......            .     ......+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            49999996 9999999999986432       122233221110            0     112235678899999999


Q ss_pred             EEecCCC--hh-hh-hcc--h----H----HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 022233          225 IICCGLT--AE-TH-HMI--N----K----QVLSALGKEGVVINIGRGPIIDEQELV  267 (300)
Q Consensus       225 ~l~~p~~--~~-t~-~li--~----~----~~l~~mk~ga~lIn~srg~~vd~~aL~  267 (300)
                      +++.-..  +. ++ .++  +    +    ..-+..+++++++.++  .++|.-..+
T Consensus        85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs--NPvDv~t~~  139 (154)
T d1y7ta1          85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG--NPANTNALI  139 (154)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred             EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec--CcHHHHHHH
Confidence            9986322  11 21 122  1    1    1222245688888886  468776654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=90.20  E-value=0.08  Score=41.79  Aligned_cols=29  Identities=31%  Similarity=0.578  Sum_probs=25.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~  199 (300)
                      +|||=|||+||+.+.|.+...+.+|...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            79999999999999999988788876554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=90.08  E-value=0.13  Score=42.48  Aligned_cols=58  Identities=17%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC-CCCcccCCHHHHhhc--CCEEEEec
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS-VSYPFYSNVCELAAN--CDILIICC  228 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~-~~~~~~~~l~e~l~~--aDvV~l~~  228 (300)
                      |+|.|.|. |-||+.+++.|...|..|.. +++.... ........+++++++  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~-~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIAL-DVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEE-CTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEE-ECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            57999995 99999999999988864444 4433321 122222345566654  49877654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.01  E-value=0.15  Score=41.13  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.2

Q ss_pred             EEEEEecChhHHHHHHHHHh--CCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDA--FGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~--~g~~V~~~~~~~~  203 (300)
                      +|+|||.|..|.+.|..|+.  +|++|++|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            89999999999999998864  6889999988764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.00  E-value=0.11  Score=43.91  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=33.0

Q ss_pred             cCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEECCCCC
Q 022233          167 LGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       167 l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |.||++.|-|.+. ||+++|+.|...|++|.+.+|+.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999864 999999999999999999988753

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.93  E-value=0.098  Score=43.60  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +|.|||.|..|..+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.89  E-value=0.17  Score=41.37  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             CCCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          168 GGKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .||+|.|.|.+ .||+++|+.|...|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            48999999985 59999999999999999888775543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.53  E-value=0.088  Score=43.93  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CCEEEEEecC-hhHHHHHHHHHhCCCEEEEECCCCCCCCCCcccCCHHHHhh--cCCEEEEecCCC--hhhhhcchHHHH
Q 022233          169 GKRVGIVGLG-SIGSLVAKRLDAFGCSISYNSRTKKPSVSYPFYSNVCELAA--NCDILIICCGLT--AETHHMINKQVL  243 (300)
Q Consensus       169 g~~vgIiG~G-~IG~~~A~~l~~~g~~V~~~~~~~~~~~~~~~~~~l~e~l~--~aDvV~l~~p~~--~~t~~li~~~~l  243 (300)
                      ||.+.|-|.+ -||+++|+.|...|++|...+|+.+..      ..+.+.++  ..++..+.+-.+  ++.+.+++ ...
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l------~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~-~~~   74 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL------RTTLKELREAGVEADGRTCDVRSVPEIEALVA-AVV   74 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH-HHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHHHHHHhcCCcEEEEEeecCCHHHHHHHHH-HHH
Confidence            5666666765 599999999999999999988864321      11111121  235555555443  34455553 334


Q ss_pred             hcCCCCcEEEEcC
Q 022233          244 SALGKEGVVINIG  256 (300)
Q Consensus       244 ~~mk~ga~lIn~s  256 (300)
                      +.+.+=-++||.+
T Consensus        75 ~~~g~iDilVnnA   87 (257)
T d2rhca1          75 ERYGPVDVLVNNA   87 (257)
T ss_dssp             HHTCSCSEEEECC
T ss_pred             HHhCCCCEEEecc
Confidence            4444334677764

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.51  E-value=0.12  Score=40.81  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=23.3

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC---CEEEEEC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG---CSISYNS  199 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g---~~V~~~~  199 (300)
                      ++|||=|||+||+.+.|.+....   .+|...+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            48999999999999999877543   5665543

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.31  E-value=0.85  Score=36.32  Aligned_cols=92  Identities=8%  Similarity=0.081  Sum_probs=63.6

Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC---------CCCcccCCHHHHhhcCCEEEEecCCChhhhhcchHHHHhcCCCCcEEE
Q 022233          183 LVAKRLDAFGCSISYNSRTKKPS---------VSYPFYSNVCELAANCDILIICCGLTAETHHMINKQVLSALGKEGVVI  253 (300)
Q Consensus       183 ~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~~~l~e~l~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lI  253 (300)
                      ..++.|...|++|.+=.-.....         .++....+.+++. +||+|+..-|.++        +.++.||+|.++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceEE
Confidence            46778888999998853322211         1333445666666 5898876655443        2467899999998


Q ss_pred             EcCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 022233          254 NIGRGPIIDEQELVRCLVQGEIKGAGLDVFEN  285 (300)
Q Consensus       254 n~srg~~vd~~aL~~aL~~~~i~~a~LDV~~~  285 (300)
                      -.--  +....++.++|.+++|...++|....
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence            7755  34567899999999999888886644

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.24  E-value=0.14  Score=42.59  Aligned_cols=36  Identities=33%  Similarity=0.413  Sum_probs=30.9

Q ss_pred             ccCCCEEEEEecCh-hHHHHHHHHHhCCCEEEEE-CCC
Q 022233          166 KLGGKRVGIVGLGS-IGSLVAKRLDAFGCSISYN-SRT  201 (300)
Q Consensus       166 ~l~g~~vgIiG~G~-IG~~~A~~l~~~g~~V~~~-~~~  201 (300)
                      .|.||++.|-|.+. ||+++|+.|...|++|.+. .++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            38999999998776 9999999999999999864 443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.17  Score=42.88  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|.|||.|..|..+|+.|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            689999999999999999999999999987654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.97  E-value=0.19  Score=42.82  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .-.|.|||.|..|-.+|..|+..|.+|+++++.+.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            44799999999999999999999999999987654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.70  E-value=0.15  Score=37.88  Aligned_cols=60  Identities=13%  Similarity=0.085  Sum_probs=39.1

Q ss_pred             EEEEEecChhHHHHHHHHH-hCCCEEEE-ECCCCCCCC----CCc--ccCCHHHHh-hcCCEEEEecCC
Q 022233          171 RVGIVGLGSIGSLVAKRLD-AFGCSISY-NSRTKKPSV----SYP--FYSNVCELA-ANCDILIICCGL  230 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~-~~g~~V~~-~~~~~~~~~----~~~--~~~~l~e~l-~~aDvV~l~~p~  230 (300)
                      +|.|+|+|.+|+.+++.+. ..|+++.+ +|..+....    +..  ..+.++++. +..++.++++|.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~   73 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR   73 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCH
Confidence            8999999999999998765 45778764 455443321    222  234555554 345777777774

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.53  E-value=0.22  Score=41.15  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=30.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      -|.|||.|.+|.++|..|+..|.+|++.++...
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999988643

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=0.53  Score=38.34  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             cChhHHHHHHHHHhCCCEEEEECCCCC-CCC-CCc--ccC-------CHHHHhhcCCEEEEecCCCh
Q 022233          177 LGSIGSLVAKRLDAFGCSISYNSRTKK-PSV-SYP--FYS-------NVCELAANCDILIICCGLTA  232 (300)
Q Consensus       177 ~G~IG~~~A~~l~~~g~~V~~~~~~~~-~~~-~~~--~~~-------~l~e~l~~aDvV~l~~p~~~  232 (300)
                      -|.||.++|+.+..+|++|+++.-... ... +..  ...       .+.+.+..+|+++.+.-..+
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeechhh
Confidence            599999999999999999986643222 111 111  111       23345688998887665443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=88.48  E-value=0.18  Score=42.15  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=29.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~  202 (300)
                      +|.|||.|.+|.++|..|+..|. +|++.++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            68999999999999999999997 699998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.35  E-value=0.89  Score=34.73  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKP  204 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~  204 (300)
                      .|.+|.|+|.|.+|...+..++..|. +|+..+++++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            37899999999999999999998887 68888887654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.35  E-value=0.14  Score=40.19  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=30.5

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      ++.|.|||-|..|...|..++.+|++|+++++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            5689999999999999999999999999887643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.071  Score=44.86  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CCCEEEEE--ecChhHHHHHHHHHh-CCCEEEEECCCCC
Q 022233          168 GGKRVGIV--GLGSIGSLVAKRLDA-FGCSISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIi--G~G~IG~~~A~~l~~-~g~~V~~~~~~~~  203 (300)
                      +||+|+||  |-+-||+++|+.|.. .|.+|+..+|+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            48999999  788999999999986 4899999998754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.24  E-value=0.24  Score=39.07  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=62.8

Q ss_pred             CCCEEEEE--ecChhHHHHHHHHHhCCCEEEEECCCCCCC---------CCCccc--------CC----HHHHh----hc
Q 022233          168 GGKRVGIV--GLGSIGSLVAKRLDAFGCSISYNSRTKKPS---------VSYPFY--------SN----VCELA----AN  220 (300)
Q Consensus       168 ~g~~vgIi--G~G~IG~~~A~~l~~~g~~V~~~~~~~~~~---------~~~~~~--------~~----l~e~l----~~  220 (300)
                      .|.++.|+  |.|.+|....+.++.+|++|+...++....         .++...        .+    ..+..    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            37789898  679999999999999999998765544321         122111        11    12221    23


Q ss_pred             CCEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCC--Ccc--cCHHHHHHHHHhCCceE
Q 022233          221 CDILIICCGLTAETHHMINKQVLSALGKEGVVINIGR--GPI--IDEQELVRCLVQGEIKG  277 (300)
Q Consensus       221 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~sr--g~~--vd~~aL~~aL~~~~i~~  277 (300)
                      .|+++-++. .+.     ....+..|+++..+|.++.  |..  ++...+.  .++-.+.|
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~--~k~~~i~G  160 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI--FKNFTSAG  160 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHH--HSCCEEEE
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEECCccCCCccCcHHHHH--HCCcEEEE
Confidence            788887763 222     2456788999999999863  333  4554443  23334444

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.00  E-value=0.41  Score=40.74  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECCC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      |+|.|.| .|-||+.+++.|...|.+|.+.++.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            4677886 5899999999999999999988763

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.80  E-value=0.23  Score=39.01  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=28.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhC--CCEEEEECCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF--GCSISYNSRTK  202 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~--g~~V~~~~~~~  202 (300)
                      |+|.|||.|.+|-.+|..|+..  +.+|+++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  45888886643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.58  E-value=0.23  Score=38.97  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CEEEEEecChhHHHHHHHHHhC---CCEEEEEC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF---GCSISYNS  199 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~---g~~V~~~~  199 (300)
                      .+|||=|||+||+.+.|.+...   +.+|...+
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            3799999999999999988742   46776554

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.50  E-value=0.041  Score=44.39  Aligned_cols=25  Identities=32%  Similarity=0.295  Sum_probs=22.7

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCE
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCS  194 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~  194 (300)
                      ++|.|||.|.+|.++|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5899999999999999999988864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.23  Score=39.49  Aligned_cols=31  Identities=19%  Similarity=0.156  Sum_probs=28.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      -|.|||.|..|...|..++.+|.+|.++++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999998764

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.59  Score=40.02  Aligned_cols=93  Identities=17%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             cCCCEEEEEec---ChhHHHHHHHHHhCC-CEEEEECCCCCCC----------C--CCcccCCHHHHhhcCCEEEEecCC
Q 022233          167 LGGKRVGIVGL---GSIGSLVAKRLDAFG-CSISYNSRTKKPS----------V--SYPFYSNVCELAANCDILIICCGL  230 (300)
Q Consensus       167 l~g~~vgIiG~---G~IG~~~A~~l~~~g-~~V~~~~~~~~~~----------~--~~~~~~~l~e~l~~aDvV~l~~p~  230 (300)
                      +.|++|+++|-   +++..+.+..+..+| +++.+..+..-..          .  ......+++++++++|+|....--
T Consensus       152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~  231 (310)
T d1tuga1         152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ  231 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCC
T ss_pred             cccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeecccc
Confidence            77999999997   788899998888885 6888776532211          1  123357899999999998753221


Q ss_pred             Chh----------hhhcchHHHHhcCCCCcEEEEcC-CCc
Q 022233          231 TAE----------THHMINKQVLSALGKEGVVINIG-RGP  259 (300)
Q Consensus       231 ~~~----------t~~li~~~~l~~mk~ga~lIn~s-rg~  259 (300)
                      ...          ..-.++.+.++.++++++|.-+. ||.
T Consensus       232 ~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~  271 (310)
T d1tuga1         232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  271 (310)
T ss_dssp             GGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSS
T ss_pred             hhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCC
Confidence            110          01235667778888888887654 554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.22  Score=41.62  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          172 VGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       172 vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |.|||.|..|-..|..|+..|.+|++++++..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78999999999999999999999999987543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.17  E-value=0.29  Score=39.55  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .|.|||.|..|...|..|+..|++|+++++...
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999988654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.13  E-value=0.35  Score=36.51  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      .+|.|||.|.+|-.+|..|+. +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999976 67999887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.97  E-value=0.36  Score=38.41  Aligned_cols=87  Identities=15%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCc-----ccCCHH----HHh--hcCCEEEEecCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKKPS-----VSYP-----FYSNVC----ELA--ANCDILIICCGLT  231 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~~~-----~~~~-----~~~~l~----e~l--~~aDvV~l~~p~~  231 (300)
                      |.+|.|+|.|.+|...+..++.+|. +|++.++++...     .++.     ...++.    ++.  ..+|+++-++...
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~  105 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE  105 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcccc
Confidence            7799999999999999999999888 788888765421     1111     112232    222  2468888776421


Q ss_pred             hh-----------hhhcchHHHHhcCCCCcEEEEcC
Q 022233          232 AE-----------THHMINKQVLSALGKEGVVINIG  256 (300)
Q Consensus       232 ~~-----------t~~li~~~~l~~mk~ga~lIn~s  256 (300)
                      ..           +... -...+..+++|..++-++
T Consensus       106 ~~~~~~~~~~~~~~~~~-l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         106 ARGHGHEGAKHEAPATV-LNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             CBCSSTTGGGSBCTTHH-HHHHHHHEEEEEEEEECS
T ss_pred             ccCCcccceeecCcHHH-HHHHHHHHhcCCEEEEee
Confidence            10           0011 234556677887777775

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.59  E-value=0.6  Score=37.82  Aligned_cols=63  Identities=16%  Similarity=0.108  Sum_probs=45.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHh--------------------CCC-EEEEECCCCCCCCCCcccCCHHHHhhcCCE
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDA--------------------FGC-SISYNSRTKKPSVSYPFYSNVCELAANCDI  223 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~--------------------~g~-~V~~~~~~~~~~~~~~~~~~l~e~l~~aDv  223 (300)
                      ..+.|++|.|||-|+.+.-+|+.|..                    .|. +|+.+.|+......+. ...+.|+.+..++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft-~~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT-IKELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCC-HHHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCC-chhhhcccccCCC
Confidence            35789999999999999999999886                    466 7887777654332221 2346677777777


Q ss_pred             EEEec
Q 022233          224 LIICC  228 (300)
Q Consensus       224 V~l~~  228 (300)
                      -+..-
T Consensus       114 ~~~~~  118 (225)
T d1cjca1         114 RPMLD  118 (225)
T ss_dssp             EEECC
T ss_pred             cceec
Confidence            66543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.41  Score=35.63  Aligned_cols=36  Identities=31%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             CCEEEEEecChhHHHHHHHH----HhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRL----DAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l----~~~g~~V~~~~~~~~~  204 (300)
                      ++++.|||-|.+|-.+|..|    +..|.+|+...+....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            67999999999999999877    4579999988876554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=2.4  Score=35.87  Aligned_cols=108  Identities=12%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCC-----CC--CCCC----------cccCCHH
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTK-----KP--SVSY----------PFYSNVC  215 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~-----~~--~~~~----------~~~~~l~  215 (300)
                      |..|...+|.|.|.|.-|-.+|+.+...    |+       +++.+|+..     +.  ....          ....+|.
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~   99 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE   99 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence            4557888999999999999999997644    32       477777531     11  0000          1124788


Q ss_pred             HHhh--cCCEEEEecCCChhhhhcchHHHHh---cCCCCcEEEEcCCCccc---CHHHHHHHHHhCCce
Q 022233          216 ELAA--NCDILIICCGLTAETHHMINKQVLS---ALGKEGVVINIGRGPII---DEQELVRCLVQGEIK  276 (300)
Q Consensus       216 e~l~--~aDvV~l~~p~~~~t~~li~~~~l~---~mk~ga~lIn~srg~~v---d~~aL~~aL~~~~i~  276 (300)
                      |+++  ..|+++-.-.    .-++++++.++   .|.+..++.=.|....-   ..+..+++ .+|+..
T Consensus       100 e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         100 DAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             HHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             HHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhh-ccCceE
Confidence            8876  7787766531    23556777665   45689999999988653   34444444 445443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.27  Score=38.49  Aligned_cols=31  Identities=29%  Similarity=0.407  Sum_probs=25.0

Q ss_pred             CEEEEEecChhHHHHHHHHHhC-CCEEEEECC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF-GCSISYNSR  200 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~~  200 (300)
                      .+|||=|||+||+.+.|.+... .++|...+.
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            3799999999999999988865 467766553

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.21  E-value=0.21  Score=39.98  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=29.6

Q ss_pred             CEEEEEecChhHHHHHHHHHhCC-------CEEEEECCCCC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAFG-------CSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~g-------~~V~~~~~~~~  203 (300)
                      .+|+|||.|.-|-+.|..|...|       ++|++|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            38999999999999999998766       58999988654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.04  E-value=0.33  Score=35.18  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             CCEEEEEecChhHHHHHHHHHhCC---CEEEEECCCCCC
Q 022233          169 GKRVGIVGLGSIGSLVAKRLDAFG---CSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~G~IG~~~A~~l~~~g---~~V~~~~~~~~~  204 (300)
                      .+++.|||.|.+|-.+|..+..+|   .+|+.+.+.+..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            469999999999999998777655   579888776543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.04  E-value=0.36  Score=38.90  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      +|++.|-|. +.||+++|+.|...|++|...+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            366777776 689999999999999999998887654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.98  E-value=0.22  Score=39.05  Aligned_cols=35  Identities=17%  Similarity=-0.005  Sum_probs=30.9

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      +.++|.|||-|..|...|..++.+|++++++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            35799999999999999999999999999887543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.67  E-value=0.8  Score=36.75  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHH--------------------hCCC-EEEEECCCCCCCCCCcccCCHHHHhhcCCE
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLD--------------------AFGC-SISYNSRTKKPSVSYPFYSNVCELAANCDI  223 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~--------------------~~g~-~V~~~~~~~~~~~~~~~~~~l~e~l~~aDv  223 (300)
                      ..+.|++|.|||-|+.+.-+|+.|.                    ..|. +|+.+.|+......+. ...+.|+.+-.++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            3578999999999999999999886                    5676 6877766544322221 2345667777776


Q ss_pred             EEEecC
Q 022233          224 LIICCG  229 (300)
Q Consensus       224 V~l~~p  229 (300)
                      -+..-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            666543

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=85.65  E-value=0.23  Score=39.14  Aligned_cols=30  Identities=27%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             CEEEEEecChhHHHHHHHHHhC----CCEEEEEC
Q 022233          170 KRVGIVGLGSIGSLVAKRLDAF----GCSISYNS  199 (300)
Q Consensus       170 ~~vgIiG~G~IG~~~A~~l~~~----g~~V~~~~  199 (300)
                      .+|||=|||+||+.+.|.+...    ..+|...+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            4899999999999999988643    34565544

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=85.31  E-value=0.4  Score=37.56  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=23.8

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~  199 (300)
                      +|||=|||+||+.+.|.+... ..+|...+
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            899999999999999987754 46776553

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=3  Score=30.28  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCCC--CCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKKP--SVSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~~--~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+|.|-|. |.-|+--++++..+|-+|. +.++...-  ..+...+.+.+|+.+  .+|.=++-+|..-....+ -+..
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~-~EAi   84 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI-LEAI   84 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH-HHHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHH-HHHH
Confidence            568999998 9999999999999999875 66654322  124556788998764  588888888854332222 2222


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      -+.+|  .+++=+-.-++-|.-.+.+.+++.+.
T Consensus        85 ~agI~--~iV~ITEgIP~~D~~~i~~~~~~~~~  115 (119)
T d2nu7a1          85 DAGIK--LIITITEGIPTLDMLTVKVKLDEAGV  115 (119)
T ss_dssp             HTTCS--EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HCCCC--EEEEecCCCCHHHHHHHHHHHhhCCC
Confidence            23232  34555556677788888888776654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.34  Score=40.94  Aligned_cols=31  Identities=29%  Similarity=0.418  Sum_probs=27.1

Q ss_pred             CEEEEEe-cChhHHHHHHHHHhCCCEEEEECC
Q 022233          170 KRVGIVG-LGSIGSLVAKRLDAFGCSISYNSR  200 (300)
Q Consensus       170 ~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~  200 (300)
                      |+|.|.| .|-||+.+++.|...|++|++.++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            6788887 578999999999999999998875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.65  Score=39.27  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=39.9

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCC-CEEEEECCCCCCC------CCC-------cccCCHHH-HhhcCCEEEEecCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFG-CSISYNSRTKKPS------VSY-------PFYSNVCE-LAANCDILIICCGL  230 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g-~~V~~~~~~~~~~------~~~-------~~~~~l~e-~l~~aDvV~l~~p~  230 (300)
                      |+|.|.|. |-||+.+++.|...| .+|++.|+.....      ..+       ....++.+ +.+++|+|+-+.-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            47788875 889999999999888 5898887643211      011       11123333 67889988765543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.93  E-value=0.32  Score=38.45  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      -|.|||.|..|...|..++.+|.+|+++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999987653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.93  E-value=0.46  Score=38.69  Aligned_cols=35  Identities=26%  Similarity=0.211  Sum_probs=27.8

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      |.|.|-|. +.||+++|+.|...|++|++.+++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            34566675 569999999999999999988876543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=84.58  E-value=0.48  Score=40.46  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             cCCCEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCCCC------------C--------CCcccCCHHHHhhcCCEEE
Q 022233          167 LGGKRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKKPS------------V--------SYPFYSNVCELAANCDILI  225 (300)
Q Consensus       167 l~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~~~------------~--------~~~~~~~l~e~l~~aDvV~  225 (300)
                      -.||+|.|.|. |.||+.+++.|...|++|.+..|+....            .        ......++.+++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            45999999985 6799999999999999998766543210            0        1112345667889999887


Q ss_pred             EecC
Q 022233          226 ICCG  229 (300)
Q Consensus       226 l~~p  229 (300)
                      .+.-
T Consensus        89 ~~a~   92 (342)
T d1y1pa1          89 HIAS   92 (342)
T ss_dssp             ECCC
T ss_pred             hhcc
Confidence            6543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.45  E-value=0.42  Score=37.94  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      -|.|||.|..|...|..++..|++|.+++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999998653

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.22  E-value=4.7  Score=29.28  Aligned_cols=104  Identities=21%  Similarity=0.218  Sum_probs=69.6

Q ss_pred             CCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCCC--CCCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHHH
Q 022233          169 GKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKKP--SVSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQV  242 (300)
Q Consensus       169 g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~~--~~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~~  242 (300)
                      +.+|.|-|. |..|+--++++..+|-+|. +.++...-  ..+...+.+.+|+.+  ++|.=++.+|........ -+..
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi-~EAi   85 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA-LEAA   85 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH-HHHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHH-HHHH
Confidence            458999998 9999999999999999875 56654322  124556788988764  589889999853332222 2233


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 022233          243 LSALGKEGVVINIGRGPIIDEQELVRCLVQGEI  275 (300)
Q Consensus       243 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~~~i  275 (300)
                      -+.+|  .+++=+-.-++-|.-.+.+.+++.+.
T Consensus        86 ~agI~--liv~ITEgVPv~Dm~~i~~~~~~~~~  116 (121)
T d1oi7a1          86 HAGIP--LIVLITEGIPTLDMVRAVEEIKALGS  116 (121)
T ss_dssp             HTTCS--EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             hCCCc--EEEEecCCCCHHHHHHHHHHHHhCCC
Confidence            23232  34444555666788888888776554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=84.21  E-value=0.31  Score=37.89  Aligned_cols=85  Identities=14%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcccCCHHHH---------hhcCCEEEEecCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPFYSNVCEL---------AANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~~~~l~e~---------l~~aDvV~l~~p~~  231 (300)
                      ..|.+|.|-| .|.+|....+.++.+|++|+...++.++..     ++....+-++.         -+..|+|+-++- .
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-g  100 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-G  100 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC-T
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc-H
Confidence            3466899998 599999999999999999998887765421     22211111111         134677777653 1


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR  257 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr  257 (300)
                      +     .-.+.+..++++..+|.++.
T Consensus       101 ~-----~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         101 K-----QLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhccCceEEEeec
Confidence            1     22467888999999998873

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.06  E-value=0.43  Score=37.82  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=31.4

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      ..++||+|.|||.|.-|..+|..+...+.++...-++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4589999999999999999999999888877655444

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.90  E-value=0.75  Score=35.03  Aligned_cols=36  Identities=17%  Similarity=0.007  Sum_probs=29.6

Q ss_pred             CCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCCCC
Q 022233          168 GGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRTKK  203 (300)
Q Consensus       168 ~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~~~  203 (300)
                      .+++|.|||-|..|.-.|..+..+|. .|+.+.|...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            36789999999999999999999997 4666665443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.66  E-value=0.52  Score=36.03  Aligned_cols=31  Identities=26%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      .|.|||-|.+|-..|..++.+|++|++.++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4889999999999999999999999988764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=83.44  E-value=0.49  Score=39.78  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             EEEEEecChhHHHHHHHHH-----hCCCEEEEECCCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLD-----AFGCSISYNSRTKKP  204 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~-----~~g~~V~~~~~~~~~  204 (300)
                      -|.|||.|..|..+|..|+     ..|.+|+++++.+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            6999999999999999995     469999999987654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.04  E-value=0.6  Score=37.99  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKKP  204 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~~  204 (300)
                      .|.|||.|..|...|..|+..|.+|+++++.+..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            5899999999999999999999999999987653

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=82.71  E-value=1.4  Score=37.61  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             ccccCCCEEEEEecChhHHHHHHHHHhC----CC-------EEEEECCCC------CCCC----C----CcccCCHHHHh
Q 022233          164 GSKLGGKRVGIVGLGSIGSLVAKRLDAF----GC-------SISYNSRTK------KPSV----S----YPFYSNVCELA  218 (300)
Q Consensus       164 g~~l~g~~vgIiG~G~IG~~~A~~l~~~----g~-------~V~~~~~~~------~~~~----~----~~~~~~l~e~l  218 (300)
                      |..|...+|.|+|.|.-|-.+|+.+...    |.       +++.+|+..      ....    .    .....++.+++
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i   99 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVI   99 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHH
Confidence            4457788999999999999999988743    32       377777532      1100    0    11224677776


Q ss_pred             hcC--CEEEEecCCChhhhhcchHHHHhcC---CCCcEEEEcCCCcccC
Q 022233          219 ANC--DILIICCGLTAETHHMINKQVLSAL---GKEGVVINIGRGPIID  262 (300)
Q Consensus       219 ~~a--DvV~l~~p~~~~t~~li~~~~l~~m---k~ga~lIn~srg~~vd  262 (300)
                      +..  ++++-+-    ...++++++.++.|   .+..++.=.|....--
T Consensus       100 ~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         100 RAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            644  5555542    12456777777655   4888999998876543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.66  E-value=0.48  Score=36.95  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~  199 (300)
                      +|||=|||+||+.+.|.+... ..+|.+.+
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN   31 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN   31 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence            799999999999999988854 46776654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.59  E-value=0.5  Score=37.51  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      .|.|||.|..|...|..++.+|.+|.+.++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            6899999999999999999999999998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.49  E-value=0.61  Score=37.18  Aligned_cols=33  Identities=24%  Similarity=0.173  Sum_probs=29.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      -|.|||.|..|...|..++.+|++|.+++..+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            589999999999999999999999999986543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.23  E-value=0.35  Score=37.95  Aligned_cols=111  Identities=17%  Similarity=0.113  Sum_probs=68.9

Q ss_pred             cCCCEEEEEe-cChhHHHHHHHHHhCCCEEEEECCCCCCCC-----CCcc---cC-CHHHHh-----hcCCEEEEecCCC
Q 022233          167 LGGKRVGIVG-LGSIGSLVAKRLDAFGCSISYNSRTKKPSV-----SYPF---YS-NVCELA-----ANCDILIICCGLT  231 (300)
Q Consensus       167 l~g~~vgIiG-~G~IG~~~A~~l~~~g~~V~~~~~~~~~~~-----~~~~---~~-~l~e~l-----~~aDvV~l~~p~~  231 (300)
                      -.|.+|.|.| .|.+|....+.++..|++|+...+++++..     ++..   +. ..++..     +..|+|+-++...
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~  109 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR  109 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence            4478999999 599999999999999999998877665421     2211   11 112221     3467888776422


Q ss_pred             hhhhhcchHHHHhcCCCCcEEEEcCC-CcccCHHHHHHHHHhCCceEEEeeCCC
Q 022233          232 AETHHMINKQVLSALGKEGVVINIGR-GPIIDEQELVRCLVQGEIKGAGLDVFE  284 (300)
Q Consensus       232 ~~t~~li~~~~l~~mk~ga~lIn~sr-g~~vd~~aL~~aL~~~~i~~a~LDV~~  284 (300)
                            .-...+..|+++..++.++- ++....-.+...+. +++.-.++|.+.
T Consensus       110 ------~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~-k~~~i~Gv~~~~  156 (176)
T d1xa0a2         110 ------TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFIL-RGVSLLGIDSVY  156 (176)
T ss_dssp             ------THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHH-TTCEEEECCSSS
T ss_pred             ------hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHH-CCcEEEEEeCCc
Confidence                  23567888999999999873 33333333333332 344446666544

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.74  E-value=0.42  Score=37.07  Aligned_cols=95  Identities=14%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCC--C--EEEEE-CCCC-------CCCC-----------CCcccCCHHH---Hh---hcC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFG--C--SISYN-SRTK-------KPSV-----------SYPFYSNVCE---LA---ANC  221 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g--~--~V~~~-~~~~-------~~~~-----------~~~~~~~l~e---~l---~~a  221 (300)
                      +|+|+|+|.+|+.+++.+....  .  +|.+. +.+.       ....           ......++++   .+   ...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            7999999999999999988532  2  44332 2111       0000           0011112222   22   223


Q ss_pred             CEEEEecCCChhhhhcchHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 022233          222 DILIICCGLTAETHHMINKQVLSALGKEGVVINIGRGPIIDEQELVRCL  270 (300)
Q Consensus       222 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL  270 (300)
                      |+++-+. .+++....    +.+.++.|.-+|-..-+.+...-+.++.|
T Consensus        86 ~vivd~t-~~~~~~~~----~~~aL~~G~hVVTANK~~la~~~~~~~~L  129 (168)
T d1ebfa1          86 VILVDNT-SSAYIAGF----YTKFVENGISIATPNKKAFSSDLATWKAL  129 (168)
T ss_dssp             EEEEECS-CCHHHHTT----HHHHHHTTCEEECCCCGGGSSCHHHHHHH
T ss_pred             eEEEEec-CChHHHHH----HHHHHHcCCeEEecCcccccCCHHHHHHH
Confidence            4444443 34443333    23456788888888888876555555555

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=81.29  E-value=0.51  Score=36.95  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEEEC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAF-GCSISYNS  199 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~-g~~V~~~~  199 (300)
                      +|||=|||+||+.+.|.+... ..+|.+.+
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaIN   32 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEc
Confidence            799999999999999988754 45776554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.37  Score=44.56  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEecChhHHHHHHHHHhCCC-EEEEECCC
Q 022233          165 SKLGGKRVGIVGLGSIGSLVAKRLDAFGC-SISYNSRT  201 (300)
Q Consensus       165 ~~l~g~~vgIiG~G~IG~~~A~~l~~~g~-~V~~~~~~  201 (300)
                      ..|.+++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            35889999999999999999999999897 78887753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.08  E-value=0.92  Score=33.27  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             cccccCCCEEEEEecChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          163 IGSKLGGKRVGIVGLGSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       163 ~g~~l~g~~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      .+...+||+|.|||.|.-+-.-|..|..+.-+|++..|.+.
T Consensus        24 D~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          24 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             HGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             ChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            35668899999999999999999999999889988766543

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.01  E-value=6.7  Score=28.79  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             CCCEEEEEec-ChhHHHHHHHHHhCCCEEE-EECCCCCCC--CCCcccCCHHHHhh--cCCEEEEecCCChhhhhcchHH
Q 022233          168 GGKRVGIVGL-GSIGSLVAKRLDAFGCSIS-YNSRTKKPS--VSYPFYSNVCELAA--NCDILIICCGLTAETHHMINKQ  241 (300)
Q Consensus       168 ~g~~vgIiG~-G~IG~~~A~~l~~~g~~V~-~~~~~~~~~--~~~~~~~~l~e~l~--~aDvV~l~~p~~~~t~~li~~~  241 (300)
                      .+.+|.+-|+ |.-|+--++++..+|-+|. +..+...-.  .+...+.+.+|+.+  ++|.=++.+|..-....+ -+.
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi-~EA   92 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAI-NEA   92 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHH-HHH
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHH-HHH
Confidence            3568999999 9999999999999999876 566543221  24556789999875  689989999843332222 233


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHH-HhCCc
Q 022233          242 VLSALGKEGVVINIGRGPIIDEQELVRCL-VQGEI  275 (300)
Q Consensus       242 ~l~~mk~ga~lIn~srg~~vd~~aL~~aL-~~~~i  275 (300)
                      .-+.++  .+++=+-.-++-|.-.+.+.+ ++++.
T Consensus        93 i~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~  125 (130)
T d1euca1          93 IDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKT  125 (130)
T ss_dssp             HHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSC
T ss_pred             HhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCc
Confidence            333333  233334444556777777665 44433

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.83  E-value=0.68  Score=36.44  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRT  201 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~  201 (300)
                      -+.|||.|..|...|..++.+|.+|.+.+..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3789999999999999999999999988753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.36  E-value=0.89  Score=37.85  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             CEEEEEec-ChhHHHHHHHHHhCCCEEEEECCCCC
Q 022233          170 KRVGIVGL-GSIGSLVAKRLDAFGCSISYNSRTKK  203 (300)
Q Consensus       170 ~~vgIiG~-G~IG~~~A~~l~~~g~~V~~~~~~~~  203 (300)
                      |+|.|.|. |-||+.+++.|...|++|.+.+|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            57777774 88999999999999999999887543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=80.29  E-value=0.74  Score=36.73  Aligned_cols=32  Identities=25%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEECCCC
Q 022233          171 RVGIVGLGSIGSLVAKRLDAFGCSISYNSRTK  202 (300)
Q Consensus       171 ~vgIiG~G~IG~~~A~~l~~~g~~V~~~~~~~  202 (300)
                      -|.|||.|..|.+.|..++.+|.+|+++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999997654