Citrus Sinensis ID: 022248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MILNSSSSSVSSAINTTCSSRKTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEccEEEEEccHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHccHHHHcccccccccccccccccccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHcccccEEHHccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
milnsssssvSSAINttcssrktpptsrnqlsineqlcggkscccgsrrhfiqgasTALFplvysstpssasspsdsmamlnrlhpprpdwyEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIgigtgpnlkyyaadtdvqvlgvdpnrkMEKYAQTAAVAAGLPLTNFKFLQAVgeaipvsdasvDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDplqqivsdgchltrqtgnniseagFSSVELGNAflsnaslisphvygiahk
Flexible Loop (DISEMBL)
milnsssssvssainttcssrktpptsrnqlSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGigtgpnlkyyaaDTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSnaslisphVYGIAHK
Low Complexity Region (SEG)
MILNsssssvssAINTTCSSRKTPPTSRNQLSINEQLcggkscccgsRRHFIQGASTALFPLVYsstpssasspsdsmamLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Disordered region (IsUnstruct)
*********************************NEQLCGGKSCCCGSRRHFIQGASTALFPLVY*************************DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGI***
Disordered Region (DISOPRED)
********************************************CGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Disordered Region (DISEMBL)
***************************RNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVY*************MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Disordered Region (DISPRO)
***************************************GKSCCCGSRRHFIQGASTALFPLVYSSTPS*******SMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNSSSSSVSSAINTTCSSRKTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9H8H3	244	Methyltransferase-like pr	yes	no	0.633	0.778	0.430	1e-33
Q562C4	244	Methyltransferase-like pr	no	no	0.666	0.819	0.403	7e-31
Q9DD20	244	Methyltransferase-like pr	no	no	0.673	0.827	0.404	8e-31
Q6UX53	244	Methyltransferase-like pr	no	no	0.72	0.885	0.365	4e-29
O31474	253	Uncharacterized methyltra	yes	no	0.376	0.446	0.310	6e-08
Q9ZCP3	248	Ubiquinone/menaquinone bi	yes	no	0.423	0.512	0.291	2e-06
A8EZP4	248	Ubiquinone/menaquinone bi	yes	no	0.336	0.407	0.320	2e-06
P59911	259	Ubiquinone/menaquinone bi	yes	no	0.39	0.451	0.308	4e-06
H2E7T8	389	Sterol methyltransferase-	N/A	no	0.53	0.408	0.289	5e-06
Q9CKD6	268	Ubiquinone/menaquinone bi	yes	no	0.393	0.440	0.303	6e-06

>sp|Q9H8H3|MET7A_HUMAN Methyltransferase-like protein 7A OS=Homo sapiens GN=METTL7A PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 12/202 (5%)

Query: 107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
           Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y     V    +DPN   E
Sbjct: 47  YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTC--IDPNPNFE 104

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRV 220
           K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+EV RV
Sbjct: 105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRV 163

Query: 221 LKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
           L+PGG + F+EHVAA+  T+  FWQ V+DP   ++ DGC+LTR++   +  A FS ++L 
Sbjct: 164 LRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQ 223

Query: 281 N--AFLSNASLISPHVYGIAHK 300
           +  A LS   L+ PH+YG A K
Sbjct: 224 HIQAPLS-WELVRPHIYGYAVK 244

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q562C4|MET7B_RAT Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b PE=1 SV=1

 Score =  134 bits (338), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 120/208 (57%), Gaps = 8/208 (3%)

Query: 97  ASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKV--LEIGIGTGPNLKYYAADTDVQVLGV 154
           A++   S K  E++     SQ+ D L+G + +V  LE+G GTG N ++Y     V    V
Sbjct: 41  ATLTARSYKKMESKKRELFSQIKD-LKGTSNEVTLLELGCGTGANFQFYPPGCKVTC--V 97

Query: 155 DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMT 213
           DPN   EK+  T ++A    L   +F+ A GE +  ++D+S+D VV TLVLCSV+     
Sbjct: 98  DPNPNFEKFL-TKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKV 156

Query: 214 LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273
           LQEV+RVLKPGG+  F EHV+   G+    WQ V++P  + + DGCHLTR+T  +I +A 
Sbjct: 157 LQEVQRVLKPGGLLFFWEHVSEPQGSQALLWQRVLEPTWKHIGDGCHLTRETWKDIEKAQ 216

Query: 274 FSSVELGNAFLSNASL-ISPHVYGIAHK 300
           FS V+L         L + PH+ G A K
Sbjct: 217 FSEVQLEWQPPPFKWLPVGPHIMGKAVK 244

Probable methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9DD20|MET7B_MOUSE Methyltransferase-like protein 7B OS=Mus musculus GN=Mettl7b PE=2 SV=2

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 118/210 (56%), Gaps = 8/210 (3%)

Query: 95  FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKV--LEIGIGTGPNLKYYAADTDVQVL 152
           F A +   S K  E++     SQ+ D L+G +  V  LE+G GTG N ++Y     V   
Sbjct: 39  FMAMLTARSYKKMESKKRELFSQIKD-LKGTSGNVALLELGCGTGANFQFYPQGCKVTC- 96

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVD 211
            VDPN   EK+  T ++A    L   +F+ A GE +  ++D+S+D VV TLVLCSV+   
Sbjct: 97  -VDPNPNFEKFL-TKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPR 154

Query: 212 MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE 271
             LQEV+RVL+PGG+  F EHVA   G+    WQ V++P  + + DGCHLTR+T  +I  
Sbjct: 155 KVLQEVQRVLRPGGLLFFWEHVAEPQGSRAFLWQRVLEPTWKHIGDGCHLTRETWKDIER 214

Query: 272 AGFSSVELGNAFLSNASL-ISPHVYGIAHK 300
           A FS V+L         L + PH+ G A K
Sbjct: 215 AQFSEVQLEWQPPPFRWLPVGPHIMGKAVK 244

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6UX53|MET7B_HUMAN Methyltransferase-like protein 7B OS=Homo sapiens GN=METTL7B PE=2 SV=2

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 123/230 (53%), Gaps = 14/230 (6%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG---KAKKV--LEI 132
           MA+L    P    ++    A +   S +  E++    K +LF  ++G    + KV  LE+
Sbjct: 22  MALLGCWQPLCKSYFPYLMAVLTPKSNRKMESK----KRELFSQIKGLTGASGKVALLEL 77

Query: 133 GIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVS 191
           G GTG N ++Y     V  L  DPN   EK+  T ++A    L   +F+ A GE +  ++
Sbjct: 78  GCGTGANFQFYPPGCRVTCL--DPNPHFEKFL-TKSMAENRHLQYERFVVAPGEDMRQLA 134

Query: 192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL 251
           D S+D VV TLVLCSV+     LQEVRRVL+PGG+  F EHVA   G++   WQ V +P 
Sbjct: 135 DGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPYGSWAFMWQQVFEPT 194

Query: 252 QQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASL-ISPHVYGIAHK 300
            + + DGC LTR+T  ++  A FS +++         L + PH+ G A K
Sbjct: 195 WKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMGKAVK 244

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O31474|YCGJ_BACSU Uncharacterized methyltransferase YcgJ OS=Bacillus subtilis (strain 168) GN=ycgJ PE=1 SV=2

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           +VL+IG G G     ++     + +GVD  ++M + A + A   G+   N +F Q   E+
Sbjct: 40  RVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAES 96

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF 243
           +P  D S D +          DV   ++EV RVLK  G +L V+H A +D    +F
Sbjct: 97  LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF 152

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZCP3|UBIE_RICPR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia prowazekii (strain Madrid E) GN=ubiE PE=3 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 10/137 (7%)

Query: 129 VLEIGIGTGP---NLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
           +L++  G+G     L   A D   ++ ++  D N +M   A+  ++   L   N KF+ A
Sbjct: 61  ILDVASGSGDIALKLAKKAKDRGNNISLILSDINEEMLNNAKKKSIDLNL-FQNIKFIVA 119

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT---F 240
             E +P SD S D       + +V D++  L+E  RVLKP G ++ +E    K+G    F
Sbjct: 120 NAEELPFSDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFVCLEFSKVKEGILKDF 179

Query: 241 LKFWQ-NVVDPLQQIVS 256
            KF+  N++  + QI++
Sbjct: 180 YKFYSFNIIPSIGQIIA 196

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|A8EZP4|UBIE_RICCK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia canadensis (strain McKiel) GN=ubiE PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 155 DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
           D N +M + A+  A+   L   N KF  A   A+P SD S D       + +V D++  L
Sbjct: 92  DINEEMLRNAKKKAIDLNL-FQNLKFTLASAAALPFSDNSFDYYTIAFGIRNVPDINKAL 150

Query: 215 QEVRRVLKPGGIYLFVEHVAAKDGT---FLKFWQ-NVVDPLQQIVS 256
           +E  RVLKP G ++ +E    K+G    F KF+  N++  + Q+++
Sbjct: 151 KEAYRVLKPMGKFICLEFSKVKEGILKDFYKFYSFNIIPQIGQMIA 196

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Rickettsia canadensis (strain McKiel) (taxid: 293613)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|P59911|UBIE_HAEDU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=ubiE PE=3 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 125 KAKKVLEIGIGTG---PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
           K +KVL++  GTG           +T  QV+  D N  M +  +      G+ + N  ++
Sbjct: 71  KGQKVLDLAGGTGDFSAKFSRIVGETG-QVVLADINSSMLEVGRDKLRNLGV-VGNINYV 128

Query: 182 QAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241
           QA  E +P +D + D VV +  L +V D D  L+ + RVLKPGG  L +E          
Sbjct: 129 QANAEHLPFADNTFDCVVISFGLRNVTDKDKALKSMYRVLKPGGRLLVLE---------- 178

Query: 242 KFWQNVVDPLQQI 254
            F + + DP+ Q+
Sbjct: 179 -FSKPIFDPISQL 190

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

>sp|H2E7T8|SMTL1_BOTBR Sterol methyltransferase-like 1 OS=Botryococcus braunii GN=SMT-1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 73  SPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-------GK 125
           S  DS+ M+N  +    D YE  +    + S +   A  A  ++Q+    R         
Sbjct: 93  SKEDSVKMVNTFYDLVTDAYEWAWDISFHFSCRPVWANFA--QAQVLHECRIANLARIQP 150

Query: 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
             KV+++G G G   +  A+ T   V GV  N    K A      AGL L  +K +QA  
Sbjct: 151 GMKVIDVGTGVGNPGRTIASLTGAHVTGVTINAYQIKRALHHTKKAGL-LDMYKPVQADF 209

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234
             +P +D S DA       C    ++    EV RVLKPG  +   E V+
Sbjct: 210 TDMPFADESFDAAFAIEATCHAPKLEQVYAEVYRVLKPGAYFAVYEAVS 258

Unable to convert squalene, botryococcene, cycloartenol, zymosterol or lanosterol to mono-, di-, tri- or tetramethylated derivatives.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CKD6|UBIE_PASMU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pasteurella multocida (strain Pm70) GN=ubiE PE=3 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 125 KAKKVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
           K  KVL++  GTG     ++       +V+  D N  M +  +      G+ + N  ++Q
Sbjct: 80  KGHKVLDLAGGTGDFTAKFSRLVGPSGEVILADINDSMLRVGREKLRNLGV-VGNVNYVQ 138

Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
           A  EA+P  D + D V+ +  L +V D D  L+ + RVLKPGG  L +E           
Sbjct: 139 ANAEALPFPDNTFDCVIISFGLRNVTDKDKALRSMFRVLKPGGRLLVLE----------- 187

Query: 243 FWQNVVDPLQQI 254
           F + ++DPL +I
Sbjct: 188 FSKPILDPLSKI 199

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).

Pasteurella multocida (strain Pm70) (taxid: 272843)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
356499831	312	PREDICTED: methyltransferase-like protei	0.85	0.817	0.699	1e-106
225425648	306	PREDICTED: methyltransferase-like protei	0.843	0.826	0.718	1e-106
224101379	317	predicted protein [Populus trichocarpa]	0.96	0.908	0.640	1e-106
388500316	323	unknown [Lotus japonicus]	0.86	0.798	0.675	1e-101
449434764	307	PREDICTED: methyltransferase-like protei	0.963	0.941	0.597	3e-98
255562908	310	S-adenosylmethionine-dependent methyltra	0.826	0.8	0.704	4e-98
357487139	375	Methyltransferase-like protein 7A [Medic	0.843	0.674	0.656	2e-97
449435332	317	PREDICTED: methyltransferase-like protei	0.86	0.813	0.652	2e-96
449478656	317	PREDICTED: methyltransferase-like protei	0.86	0.813	0.652	6e-96
293332649	294	uncharacterized protein LOC100382865 [Ze	0.853	0.870	0.593	4e-86

>gi|356499831|ref|XP_003518740.1| PREDICTED: methyltransferase-like protein 7A-like [Glycine max]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 224/263 (85%), Gaps = 8/263 (3%)

Query: 41  KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSP-SDSMAMLNRLHPPRPDWYEEFYA 97
           K C CG RRHFI+ A+  T LFP+     PS A++P  +  A+L + HPPRPDWYEEFYA
Sbjct: 55  KPCFCG-RRHFIEAATLGTTLFPI----QPSRATNPPREYTALLKKFHPPRPDWYEEFYA 109

Query: 98  SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN 157
           SVMNS+ K YEAEVA YKSQ+F NL+GK  ++LEIGIGTGPNL YYA+ + V+V+G+DPN
Sbjct: 110 SVMNSATKDYEAEVAMYKSQIFGNLKGKGLRILEIGIGTGPNLSYYASGSGVEVVGIDPN 169

Query: 158 RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEV 217
            KMEKYA+++A +AGLP +NF+F+QAVGEAIP+SDASVDAVVGTLVLCSVKDVDMTL+EV
Sbjct: 170 PKMEKYARSSAASAGLPTSNFEFIQAVGEAIPLSDASVDAVVGTLVLCSVKDVDMTLKEV 229

Query: 218 RRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV 277
           RRVL+PGG+Y+FVEHVAAKDGTFLKF Q V+DPLQQ ++DGCHL+R+TGN+IS AGFSSV
Sbjct: 230 RRVLRPGGLYVFVEHVAAKDGTFLKFMQRVLDPLQQTLADGCHLSRETGNDISRAGFSSV 289

Query: 278 ELGNAFLSNASLISPHVYGIAHK 300
           EL  AFLS+A+ I+PH YGIA+K
Sbjct: 290 ELNTAFLSSATFINPHAYGIAYK 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425648|ref|XP_002272557.1| PREDICTED: methyltransferase-like protein 7A [Vitis vinifera] gi|296086353|emb|CBI31942.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/259 (71%), Positives = 217/259 (83%), Gaps = 6/259 (2%)

Query: 43  CCCGSRRHFIQGASTALFPLVYSSTPSSASSP-SDSMAMLNRLHPPRPDWYEEFYASVMN 101
           C CG RRH IQ  +TAL P+    +PS A+   SDS AMLNR+HPPRPDWYEE YA+V++
Sbjct: 53  CSCG-RRHLIQACATALLPI----SPSHATPLLSDSTAMLNRVHPPRPDWYEELYAAVLD 107

Query: 102 SSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             M++YEAE+AGYKSQLF NLRGKAKKVLEIGIGTGPNLKYYA  TD++V G+DPN KME
Sbjct: 108 KGMEAYEAEIAGYKSQLFSNLRGKAKKVLEIGIGTGPNLKYYANGTDIEVFGIDPNMKME 167

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVL 221
           KYA+ AAVA+GLP TNFKF+ AVGEA+P+SDA+VDAVVGTLVLCSVKDVD  L+EV+RVL
Sbjct: 168 KYAKAAAVASGLPPTNFKFIHAVGEALPLSDAAVDAVVGTLVLCSVKDVDTALKEVKRVL 227

Query: 222 KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281
           KPGG+YLFVEHVAA+DGT L+F QNV+DPLQQ VSDGCHLTR+TG +I EAGFS V + +
Sbjct: 228 KPGGLYLFVEHVAARDGTVLRFLQNVLDPLQQTVSDGCHLTRETGKHIFEAGFSGVNISS 287

Query: 282 AFLSNASLISPHVYGIAHK 300
             L NA + SPHVYGIA K
Sbjct: 288 TSLRNAFVASPHVYGIACK 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101379|ref|XP_002312254.1| predicted protein [Populus trichocarpa] gi|222852074|gb|EEE89621.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/303 (64%), Positives = 237/303 (78%), Gaps = 15/303 (4%)

Query: 5   SSSSSVSSAINTTCSSRKTPPTSRNQLSINEQL--CGGKSCCCGSRRHFIQGASTALFPL 62
           +S+ +++  +N        P +S      N +L     +SC CG RRHF++ ASTALFP+
Sbjct: 23  TSTPTIAPFLNPVTRQSNQPDSSGRSEENNGELLRASSRSCMCG-RRHFLEAASTALFPI 81

Query: 63  VYSSTPSSASSPSDSM-----AMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQ 117
                PS AS   D++      +LNR+HPPRPDWY+EFYASV+NS+++ YEAEVA YK+Q
Sbjct: 82  C----PSIAS---DNLQPRYKTVLNRVHPPRPDWYDEFYASVLNSTVEPYEAEVAVYKTQ 134

Query: 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN 177
           LF NLRGKAKKVLEIGIGTGPNLKYYA   D+QV GVDPN KMEK+AQ +AVAAGLPL+N
Sbjct: 135 LFTNLRGKAKKVLEIGIGTGPNLKYYANSADIQVYGVDPNTKMEKFAQESAVAAGLPLSN 194

Query: 178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
           F+F+QAVGEAIP++DASVDAVVGTLVLCSV++V  TLQEV+RVLKPGG+YLFVEHVAAKD
Sbjct: 195 FEFIQAVGEAIPLNDASVDAVVGTLVLCSVEEVGQTLQEVKRVLKPGGLYLFVEHVAAKD 254

Query: 238 GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGI 297
           GT L+  Q+ +DPLQQ V+DGCHL+R TG  I +AGFSSV+L  AFLSNA +I+PHVYGI
Sbjct: 255 GTILRLLQSALDPLQQTVADGCHLSRDTGKEILKAGFSSVDLSMAFLSNALIINPHVYGI 314

Query: 298 AHK 300
           A K
Sbjct: 315 ASK 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500316|gb|AFK38224.1| unknown [Lotus japonicus]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 216/262 (82%), Gaps = 4/262 (1%)

Query: 41  KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYAS 98
           K C CG RR FI+ A+  T  FP +  +  S+    SD   +LN+ HPPRPDWYEE YA 
Sbjct: 64  KPCFCG-RRRFIEAATLGTTRFP-IQPARASNLEPDSDYKVLLNKFHPPRPDWYEELYAW 121

Query: 99  VMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158
           V+NS+ KSYEAEVA YKSQ+F NL+GKA ++LEIGIG G NL YY +D  VQV+G+DPN 
Sbjct: 122 VLNSATKSYEAEVAKYKSQIFSNLKGKANRILEIGIGPGLNLSYYGSDPGVQVVGIDPNL 181

Query: 159 KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVR 218
           KMEKYAQ++A +AGLPL+NF+F+QAVGE+IP+SDASVDAVVGTLVLCSVK VD+TL+EV 
Sbjct: 182 KMEKYAQSSAESAGLPLSNFEFIQAVGESIPLSDASVDAVVGTLVLCSVKYVDLTLKEVM 241

Query: 219 RVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
           RVL+PGG+Y+FVEHVA KDGTFLKF Q V+DPLQQ V+DGCHL+R+TGNNIS AGFS+VE
Sbjct: 242 RVLRPGGLYVFVEHVAEKDGTFLKFLQRVLDPLQQTVADGCHLSRETGNNISSAGFSNVE 301

Query: 279 LGNAFLSNASLISPHVYGIAHK 300
           L  A+LSNAS ++PH+YGIA+K
Sbjct: 302 LEVAYLSNASFVNPHIYGIAYK 323

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434764|ref|XP_004135166.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus] gi|449478387|ref|XP_004155304.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 233/303 (76%), Gaps = 14/303 (4%)

Query: 2   ILNSSSSSVSSAINTTCSSR---KTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGAS-T 57
           I N+S  +   + ++ C+ +   + PP  R         C   SC CG RR FI+ A+ T
Sbjct: 15  ISNASQQAKPRSSSSNCAHQSIPEAPPFPR-------LFCHNHSCLCG-RRRFIEAATAT 66

Query: 58  ALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQ 117
           +LFPL  S   +S++SPSD  A+LNR+  P+PDWYE+FYASV+ + MKSYE E+A YKSQ
Sbjct: 67  SLFPLCPSM--ASSNSPSDYAAILNRVRSPKPDWYEDFYASVLANGMKSYEEEIAVYKSQ 124

Query: 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN 177
           +F NLRGK++KVLEIGIG GPNLKYYA +  ++V GVDPN+KMEKYA+ AA  AGLP  +
Sbjct: 125 MFANLRGKSQKVLEIGIGAGPNLKYYAGNEGMEVYGVDPNQKMEKYAREAAKNAGLPPES 184

Query: 178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
           F+F QAVGEAIP+ DASVDAVVGTLVLCSV +VDMTL+EV+RVL+PGG+Y+FVEHVAAK+
Sbjct: 185 FEFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLREVKRVLRPGGLYIFVEHVAAKE 244

Query: 238 GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGI 297
           GT L+F Q+V+DPLQQIV+DGCHLTR+TG NI + GFS+V+L  A  SNA+ I+P VYG+
Sbjct: 245 GTVLRFIQDVLDPLQQIVADGCHLTRRTGQNIIQTGFSNVDLNIASFSNAAFINPQVYGV 304

Query: 298 AHK 300
           A++
Sbjct: 305 AYR 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562908|ref|XP_002522459.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223538344|gb|EEF39951.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 181/257 (70%), Positives = 207/257 (80%), Gaps = 9/257 (3%)

Query: 45  CGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSM 104
           CG RRHF++   T+L   V S  P++AS      A +N++ PPRPDWYEE YASV+NS M
Sbjct: 62  CG-RRHFLE---TSLLSAV-SDAPANASG---YKATMNKVRPPRPDWYEELYASVLNSDM 113

Query: 105 -KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
             SYEAE+A YKSQLF NLRGKAKKVLEIGIGTGPNLKYY  D DV+V GVDPN KM KY
Sbjct: 114 MNSYEAEIAAYKSQLFANLRGKAKKVLEIGIGTGPNLKYYGNDDDVEVFGVDPNGKMVKY 173

Query: 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKP 223
           AQ AA AAGLP  NFKF+ AVGEAIP+SDASVDAVVGTLVLCSV +VD TLQEV+RVL+P
Sbjct: 174 AQKAAEAAGLPPANFKFIHAVGEAIPLSDASVDAVVGTLVLCSVTNVDQTLQEVKRVLRP 233

Query: 224 GGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF 283
           GG+YLFVEHVAAK+GTFL+F QN++DPLQQ V+DGCHLTR+TG  ISEAGFS V+L   F
Sbjct: 234 GGLYLFVEHVAAKEGTFLRFVQNLLDPLQQTVADGCHLTRETGKKISEAGFSGVDLNTTF 293

Query: 284 LSNASLISPHVYGIAHK 300
           LS  + I+P VYGIA K
Sbjct: 294 LSKTAFINPQVYGIASK 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487139|ref|XP_003613857.1| Methyltransferase-like protein 7A [Medicago truncatula] gi|355515192|gb|AES96815.1| Methyltransferase-like protein 7A [Medicago truncatula]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 219/265 (82%), Gaps = 12/265 (4%)

Query: 41  KSCCCGSRRHFIQGASTAL-----FPLVYSSTPSSASS-PSDSMAMLNRLHPPRPDWYEE 94
           K C CG RRHFI+ A+T       FP+     P++A++  SD  A++N+ HPP+PDWY++
Sbjct: 75  KPCLCG-RRHFIEAAATTTLTATQFPV----QPATATNFDSDYTALVNKFHPPKPDWYQK 129

Query: 95  FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLG 153
           F A  +NS  KSYEAEVA YKSQ+F NL+  KA K+LEIGIGTGPNL YY +++DVQV+G
Sbjct: 130 FMAWALNSCTKSYEAEVAQYKSQIFSNLKEKKANKILEIGIGTGPNLSYYTSNSDVQVVG 189

Query: 154 VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMT 213
           +DPN +MEKYA++AAV+AGLPL+NF+F+ AVGE IP+SDASVDAVVGTLVLCSVKDVD+T
Sbjct: 190 IDPNPEMEKYARSAAVSAGLPLSNFEFIHAVGEVIPLSDASVDAVVGTLVLCSVKDVDLT 249

Query: 214 LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG 273
           L+EVRRVL+PGG+YLFVEHVAAKDGT L+F Q V+DPLQQ ++DGCHL+R+TG++IS+AG
Sbjct: 250 LKEVRRVLRPGGVYLFVEHVAAKDGTLLRFLQRVLDPLQQTLADGCHLSRETGDSISKAG 309

Query: 274 FSSVELGNAFLSNASLISPHVYGIA 298
           FSSVE   A LSNA+ I+PHVYGI 
Sbjct: 310 FSSVEFDTAILSNATFINPHVYGIG 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435332|ref|XP_004135449.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/268 (65%), Positives = 209/268 (77%), Gaps = 10/268 (3%)

Query: 37  LCGGKSCCCGSRRHFIQGASTA----LFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWY 92
           LC   SC CG RR FI+ A+      LFP + SS PSS     D   MLNR+H P+P+WY
Sbjct: 56  LCQNHSCMCG-RRQFIEAAAATSLLPLFPSMASSNPSS-----DYTDMLNRVHSPKPEWY 109

Query: 93  EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVL 152
           E+FYAS + +SMKSYE E+A YKSQ+F NLRGK++KVLEIGIG GPNLKYYA D  VQV 
Sbjct: 110 EDFYASFLANSMKSYEEEIADYKSQMFANLRGKSQKVLEIGIGAGPNLKYYAGDEGVQVY 169

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
           GVDPN+KMEKYA+ AA  AGLP  NF F QAVGEAIP+ DASVDAVVGTLVLCSV +VDM
Sbjct: 170 GVDPNQKMEKYAREAAQNAGLPPENFVFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDM 229

Query: 213 TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272
           TL+EV+RVL+PGG+Y+FVEHVAAK+GT L+F QNV+DPLQQI  DGCHL R TG+NI  A
Sbjct: 230 TLKEVKRVLRPGGLYIFVEHVAAKEGTMLRFMQNVLDPLQQIAFDGCHLIRTTGSNIMGA 289

Query: 273 GFSSVELGNAFLSNASLISPHVYGIAHK 300
           GFS+V+L    +S+ + I+P VYGIA++
Sbjct: 290 GFSNVDLNMTSISSFAFINPQVYGIAYR 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478656|ref|XP_004155382.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/268 (65%), Positives = 208/268 (77%), Gaps = 10/268 (3%)

Query: 37  LCGGKSCCCGSRRHFIQGASTA----LFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWY 92
           LC   SC CG RR FI+ A+      LFP + SS PSS     D   MLNR+H P+P+WY
Sbjct: 56  LCQNHSCMCG-RRQFIEAAAATSLLPLFPSMASSNPSS-----DYTDMLNRVHSPKPEWY 109

Query: 93  EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVL 152
           E+FYAS + +SMKSYE E+A YKSQ+F NL GKA+KVLEIGIG GPNLKYYA D  VQV 
Sbjct: 110 EDFYASFLANSMKSYEEEIADYKSQMFANLSGKAQKVLEIGIGAGPNLKYYAGDEGVQVY 169

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
           GVDPN+KMEKYA+ AA  AGLP  NF F QAVGEAIP+ DASVDAVVGTLVLCSV +VDM
Sbjct: 170 GVDPNQKMEKYAREAAQNAGLPPENFVFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDM 229

Query: 213 TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA 272
           TL+EV+RVL+PGG+Y+FVEHVAAK+GT L+F QNV+DPLQQI  DGCHL R TG+NI  A
Sbjct: 230 TLKEVKRVLRPGGLYIFVEHVAAKEGTMLRFMQNVLDPLQQIAFDGCHLIRTTGSNIMGA 289

Query: 273 GFSSVELGNAFLSNASLISPHVYGIAHK 300
           GFS+V+L    +S+ + I+P VYGIA++
Sbjct: 290 GFSNVDLNMTSISSFAFINPQVYGIAYR 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293332649|ref|NP_001169031.1| uncharacterized protein LOC100382865 [Zea mays] gi|223974543|gb|ACN31459.1| unknown [Zea mays]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/258 (59%), Positives = 193/258 (74%), Gaps = 2/258 (0%)

Query: 43  CCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNS 102
           C CG RRH I GAS+A   L + + PS A+ P D   +L R+HP RPDWYEEFYAS M+ 
Sbjct: 39  CHCG-RRHVI-GASSAAALLPFLAPPSLAAPPVDPDVVLQRVHPSRPDWYEEFYASAMDQ 96

Query: 103 SMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK 162
            MKSYEAE+AGYK +LF  L    K +LE+G+GTGPN KYYA++  V V+GVDPN+ ME 
Sbjct: 97  GMKSYEAEIAGYKVKLFSQLSPAGKNILELGVGTGPNFKYYASEDGVNVIGVDPNKHMEN 156

Query: 163 YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLK 222
           YA+ A V+AGL  ++F F + V EA+P  D S+D VVGTLVLCSV ++DM L+E++RVLK
Sbjct: 157 YARAAVVSAGLASSSFTFRRGVAEALPAEDNSMDVVVGTLVLCSVNNIDMALREIKRVLK 216

Query: 223 PGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA 282
           PGG+Y+F+EHVAA DGT L+  Q  +DPLQQ V+DGCHLTR+TG +I +AGFSS+ L   
Sbjct: 217 PGGLYVFIEHVAAPDGTLLRLVQGALDPLQQFVADGCHLTRRTGQSIRDAGFSSLSLDGV 276

Query: 283 FLSNASLISPHVYGIAHK 300
            LSNA +ISPHVYG+A K
Sbjct: 277 RLSNAYIISPHVYGVACK 294

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:505006213	300	AT1G69523 [Arabidopsis thalian	0.823	0.823	0.573	2.2e-73
TAIR|locus:505006214	307	AT1G69526 [Arabidopsis thalian	0.826	0.807	0.533	7.2e-68
UNIPROTKB|Q3MHK8	244	METTL7A "Uncharacterized prote	0.633	0.778	0.435	1.5e-33
UNIPROTKB|H0YI09	244	METTL7A "Methyltransferase-lik	0.633	0.778	0.430	3.2e-33
UNIPROTKB|Q9H8H3	244	METTL7A "Methyltransferase-lik	0.633	0.778	0.430	3.2e-33
UNIPROTKB|J9NTA1	245	METTL7A "Uncharacterized prote	0.673	0.824	0.399	7.7e-32
ZFIN|ZDB-GENE-061027-239	242	mettl7a "methyltransferase lik	0.69	0.855	0.375	5.4e-31
ZFIN|ZDB-GENE-120215-62	242	si:ch211-173n18.3 "si:ch211-17	0.69	0.855	0.361	3.8e-30
UNIPROTKB|E1BGA1	244	METTL7B "Uncharacterized prote	0.61	0.75	0.409	4.9e-30
ZFIN|ZDB-GENE-120215-64	242	si:ch211-173n18.4 "si:ch211-17	0.69	0.855	0.365	4.9e-30

TAIR|locus:505006213 AT1G69523 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 145/253 (57%), Positives = 183/253 (72%)

Query:    48 RRHFIQGASTALFPLVYXXXXXXXXXXXXXXXXLNRLHPPRPDWYEEFYASVMNSSMKSY 107
             RRHFI  A T++ P +                 L RL PP+PDWYEEF+A  MNS ++SY
Sbjct:    52 RRHFIGAAMTSM-PFL----PISPSHASTSTEDLKRLRPPKPDWYEEFFAWSMNSEVESY 106

Query:   108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
             E EV+ YK +LFDNL GKA+KVLEIGIGTGPN KYY    +V V+G+DPN KME YA+ +
Sbjct:   107 EKEVSDYKMKLFDNLVGKAEKVLEIGIGTGPNFKYYTDIPNVSVIGIDPNAKMESYARKS 166

Query:   168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIY 227
             A  AGL    F F+ A+GE+IP+ DASVDAVVGTLVLCSV DV  TL+E++R+L+PGGIY
Sbjct:   167 ATEAGLKPEEFTFVHALGESIPLEDASVDAVVGTLVLCSVTDVTQTLKEIKRILRPGGIY 226

Query:   228 LFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS-VELGNAFLSN 286
             +F+EHVAA+DGTFL+  Q V+DPLQQ+V+DGCHLTR TG +I EA F+   ++    LS 
Sbjct:   227 IFIEHVAAEDGTFLRLVQTVLDPLQQVVADGCHLTRHTGESILEARFNGGADVKKTSLSR 286

Query:   287 ASLISPHVYGIAH 299
              + IS HVYG+A+
Sbjct:   287 LAYISSHVYGVAY 299

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

TAIR|locus:505006214 AT1G69526 [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 136/255 (53%), Positives = 178/255 (69%)

Query:    48 RRHFIQGASTALFPLVYXXXXXXXXXXXXXXXXLNRLHPPRPDWYEEFYASVMNSSMKSY 107
             R+HF++ AS  + P +                     HP RPDWY+E +A  +++ M+SY
Sbjct:    58 RKHFLEAASPTM-PFLPICSPNASRSKDVSET----FHPQRPDWYKELFAWFLSTGMRSY 112

Query:   108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
             EAE+A YK +LF+ L GKA+ VLEIG+GTGPNLKY+A + +V V G+DPN KMEKYA  +
Sbjct:   113 EAEIAEYKRKLFEKLAGKAETVLEIGVGTGPNLKYFAGNENVCVFGMDPNHKMEKYACES 172

Query:   168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIY 227
             A  AG+   NF+F+  VGEAIP+ D S+D+VV TLVLCSV DV  TL E++RVLKPGGI+
Sbjct:   173 AREAGMKPENFRFMHGVGEAIPLDDDSMDSVVATLVLCSVSDVTQTLNEIKRVLKPGGIF 232

Query:   228 LFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS-VELGN-AFLS 285
             LF+EHVAAKDG+F +  QNV+DP+QQ+V+DGCHLTR T  +IS AGF    E+ + A  S
Sbjct:   233 LFIEHVAAKDGSFFRHVQNVLDPIQQVVADGCHLTRNTDLHISAAGFDGGTEINDTAIYS 292

Query:   286 NASLISPHVYGIAHK 300
                +I PHVYG A+K
Sbjct:   293 FPWIIRPHVYGAAYK 307

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

UNIPROTKB|Q3MHK8 METTL7A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 88/202 (43%), Positives = 124/202 (61%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++   K +LF NLR   G + K+  LE+G GTG N K+Y +    QV  VDPN   E
Sbjct:    47 YNKQMESKKQELFSNLREFMGPSGKLSLLELGCGTGANFKFYPSGC--QVTCVDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRV 220
             K+    ++A    L   +F+ A GE +  V+  S+D VV TLVLCSVK+ +  LQEV RV
Sbjct:   105 KFL-IKSIAQNRHLQFERFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQEVCRV 163

Query:   221 LKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
             L+PGG + F+EHVA K  T+  FWQ V+DP+  ++ DGC+LTR++   + +A FS ++L 
Sbjct:   164 LRPGGAFYFMEHVADKPSTWNYFWQQVLDPVWYLLFDGCNLTRESWKALEKARFSKLKLQ 223

Query:   281 N--AFLSNASLISPHVYGIAHK 300
             +  A LS   L+ PH+YG A K
Sbjct:   224 HLQAPLS-WELVRPHIYGYAVK 244

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|H0YI09 METTL7A "Methyltransferase-like protein 7A" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 87/202 (43%), Positives = 124/202 (61%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRV 220
             K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+EV RV
Sbjct:   105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRV 163

Query:   221 LKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
             L+PGG + F+EHVAA+  T+  FWQ V+DP   ++ DGC+LTR++   +  A FS ++L 
Sbjct:   164 LRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQ 223

Query:   281 N--AFLSNASLISPHVYGIAHK 300
             +  A LS   L+ PH+YG A K
Sbjct:   224 HIQAPLS-WELVRPHIYGYAVK 244

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9H8H3 METTL7A "Methyltransferase-like protein 7A" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 87/202 (43%), Positives = 124/202 (61%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRV 220
             K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+EV RV
Sbjct:   105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRV 163

Query:   221 LKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
             L+PGG + F+EHVAA+  T+  FWQ V+DP   ++ DGC+LTR++   +  A FS ++L 
Sbjct:   164 LRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQ 223

Query:   281 N--AFLSNASLISPHVYGIAHK 300
             +  A LS   L+ PH+YG A K
Sbjct:   224 HIQAPLS-WELVRPHIYGYAVK 244

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9NTA1 METTL7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 87/218 (39%), Positives = 124/218 (56%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAK-----KVLEIGIGTGPNLKYYAA 145
             W+  F A    S M  Y   +AG K +LF +L+  A       +LE+G GTG N ++Y  
Sbjct:    36 WFPHFLARF--SVM--YNERMAGRKRELFGSLQAFAGPSGRLSLLEVGCGTGANFQFYPP 91

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
                 +V  VDPN   EK+    ++A    L   +F+ A GE +P V+D SVD VV TLVL
Sbjct:    92 GC--RVTCVDPNPNFEKFL-IKSIAENRHLQFERFVVAAGEDMPQVADGSVDVVVCTLVL 148

Query:   205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQ 264
             CSV+D    L+EV RVL+PGG + F+EHVAA+  T+  FWQ ++ P   ++ D CHLTR+
Sbjct:   149 CSVRDQGQILREVCRVLRPGGAFFFLEHVAAESSTWNYFWQQILHPFWHLLFDRCHLTRE 208

Query:   265 TGNNISEAGFSSVELGNAFLSNAS--LISPHVYGIAHK 300
             +   +    FS ++L + F +  S  L+ PH+ G A K
Sbjct:   209 SWKALERVPFSQLKLQH-FQAPLSWELVRPHISGYAVK 245

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-061027-239 mettl7a "methyltransferase like 7A" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 81/216 (37%), Positives = 120/216 (55%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR----GKAK-KVLEIGIGTGPNLKYYAA 145
             +Y+  +  ++     SY  ++   K +LF NL      K   ++LE+G G+G N ++Y  
Sbjct:    30 FYKRVFPIIVYKISFSYNDKMNDKKRELFRNLDRFYPSKGSLRILEVGCGSGANFEHYP- 88

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
              T  ++   DPN   +KY + + +     L    F+ A GE +  V D+SVDAVV TLVL
Sbjct:    89 -TGSKITCTDPNPHFKKYLEKS-MEKNEHLVYDSFIVASGENLQAVEDSSVDAVVCTLVL 146

Query:   205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQ 264
             CSVKD +  LQE +RVL+PGG + F+EHV +   T++ F+Q+V+ P      DGC  TR 
Sbjct:   147 CSVKDTNKVLQEAKRVLRPGGAFFFLEHVVSDPSTWVYFFQHVLQPFWYFFGDGCETTRT 206

Query:   265 TGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK 300
             T  +I  AGFS V+L +       +I PH+ G A K
Sbjct:   207 TWKDIDAAGFSDVKLRHIQAPLFFMIKPHIVGYAVK 242

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-120215-62 si:ch211-173n18.3 "si:ch211-173n18.3" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 78/216 (36%), Positives = 120/216 (55%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG-----KAKKVLEIGIGTGPNLKYYAA 145
             +++  +  +   +   Y  ++   K +LF NL        + ++LE+G G+G N ++Y  
Sbjct:    30 FFKRVFPMIQYKATDWYNNKMNDKKRELFRNLERFQPPEGSLRILEVGCGSGANFEHYP- 88

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
              T  ++   DPN   +KY + + +     L    F+ A GE +  V D+SVDAVV TLVL
Sbjct:    89 -TGSKITCTDPNPHFKKYLEKS-IEKNEHLEYDNFIVASGENLQAVEDSSVDAVVCTLVL 146

Query:   205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQ 264
             CSVKD +  LQE +RVL+PGG   F+EHV +   T+  F+Q+V++PL     DGC +TR 
Sbjct:   147 CSVKDTNKVLQESKRVLRPGGALFFLEHVVSDPSTWAYFFQHVLEPLWYFFGDGCEVTRA 206

Query:   265 TGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK 300
             T  +I  AGFS V+L +       ++ PH+ G A K
Sbjct:   207 TWKHIEAAGFSDVKLHHIQAPLFFMLKPHIVGYAVK 242

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BGA1 METTL7B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 79/193 (40%), Positives = 113/193 (58%)

Query:   115 KSQLFDNLRGKAK---KV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169
             K +LF  + G A    KV  LE+G GTG N ++Y A   +  L  DPN   EK+  T ++
Sbjct:    55 KRELFSQINGLAGTSGKVALLELGCGTGANFRFYPAGCKITCL--DPNPHFEKFL-TKSM 111

Query:   170 AAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228
             A    L   +F+ A GE +  ++D S+DAVV TLVLCSV+     LQEVRRVL+PGG++ 
Sbjct:   112 AENRHLEYERFVVAFGEDMRQLADGSMDAVVSTLVLCSVESPKRVLQEVRRVLRPGGVFF 171

Query:   229 FVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNAS 288
             F EH+A   G++   WQ V++P  + + DGCHLTR+T  ++  A FS +++         
Sbjct:   172 FWEHMAEPRGSWAFLWQQVLEPTWKHIGDGCHLTRETWRDLENAQFSELQVEQQPPPIKW 231

Query:   289 L-ISPHVYGIAHK 300
             L + PH+ G A K
Sbjct:   232 LPVGPHIMGKAVK 244

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-120215-64 si:ch211-173n18.4 "si:ch211-173n18.4" [Danio rerio (taxid:7955)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 79/216 (36%), Positives = 119/216 (55%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR----GKAK-KVLEIGIGTGPNLKYYAA 145
             +Y+  Y  +++S   +Y   +   K +LF NL      K   ++LE+G G+G N ++Y  
Sbjct:    30 FYKRLYPRLLSSFTIAYNELMNDKKRELFLNLERFQPSKGSLRILEVGCGSGANFEHYP- 88

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
              T  ++   DPN   + Y + + +     L    F+ A GE +  V D+SVDAVV TLVL
Sbjct:    89 -TGSKITCTDPNPHFKTYLEKS-MEKNEHLVYDSFIVASGENLQAVEDSSVDAVVCTLVL 146

Query:   205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQ 264
             C+VKD +  LQE +RVL+PGG + F+EHV +   T+  F+Q+V+ P    + DGC   R 
Sbjct:   147 CTVKDTNKVLQEAKRVLRPGGAFFFLEHVVSDPSTWAYFFQHVLQPFWYYLQDGCEAIRA 206

Query:   265 TGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK 300
             T  +I  AGFS V+L +       +I PH+ G A K
Sbjct:   207 TWKDIDNAGFSDVKLRHIQAPLFFMIKPHIIGYAVK 242

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	8e-23
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	6e-20
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	1e-15
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	5e-15
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-14
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-14
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	7e-14
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	6e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-11
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	2e-10
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	4e-10
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	1e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-09
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	5e-09
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	3e-08
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	4e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	6e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	1e-04
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	3e-04
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	7e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	0.001
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	0.003
COG4798	238	COG4798, COG4798, Predicted methyltransferase [Gen	0.004
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.004

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 89.6 bits (223), Expect = 8e-23
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           L++G GTG   +  A     +V GVD + +M   A+  A          KF+    E +P
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRA--------PRKFVVGDAEDLP 52

Query: 190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
             D S D VV +LVL  + D +  L+E+ RVLKPGG  + 
Sbjct: 53  FPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 86.1 bits (214), Expect = 6e-20
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 32/187 (17%)

Query: 111 VAGYKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTA 167
              Y+++ F+ L  +   +VL++G G G + +  A     + +V+G+D +  M   A+  
Sbjct: 4   FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63

Query: 168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG-- 225
           A   G    N +F++   + +P  D S DAV    VL  ++D    L E+ RVL+PGG  
Sbjct: 64  AAGLGP---NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRV 120

Query: 226 -----------IYLFVEHVAAKDGTFLKFW-QNVVDPLQQIVSDGCHLTRQTGNNISEAG 273
                       +     +  K    L FW  +  DP          L R+      EAG
Sbjct: 121 VVLDTDWDTLVWHSGDRALMRK---ILNFWSDHFADP---------WLGRRLPGLFREAG 168

Query: 274 FSSVELG 280
            + +E+ 
Sbjct: 169 LTDIEVE 175

Length = 241

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 124 GKAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
               KVL++  GTG   L    +    +V+G+D +  M + A+      G+   N +F+ 
Sbjct: 50  KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV--QNVEFVV 107

Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
              E +P  D S DAV  +  L +V D+D  L+E+ RVLKPGG  L +E     +    K
Sbjct: 108 GDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK 167

Query: 243 F----WQNVVDPL 251
                +   V PL
Sbjct: 168 AYILYYFKYVLPL 180

Length = 238

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 73.0 bits (176), Expect = 5e-15
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 77  SMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGT 136
              +   L     + Y+     +    + + E        +L   L G    VL+IG GT
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGG-LGVLDIGCGT 59

Query: 137 GPNLKY-YAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195
           G              V+GVD + +M   A+  A  AGL L +F    A+G  +P  D++ 
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSAS 119

Query: 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA 234
             +V +L++  +      L+E+ RVLKPGG  +  + + 
Sbjct: 120 FDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158

Length = 257

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGE 186
           +VL++G GTG      A+    +V GVD +    + A+ AA A      N + L+    E
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD--NVEVLKGDAEE 58

Query: 187 AIPVSDASVDAVVGTLVL-CSVKDVDMTLQEVRRVLKPGGIYLFV 230
             P +D S D ++    L   V+D+   L+E RR+LKPGG+ +  
Sbjct: 59  LPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 124 GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF 180
               KVL++G GTG  L +  A+      +V+G+D + +  + A+    A  L   N +F
Sbjct: 2   KSGIKVLDLGCGTG-YLTFILAEKLGPGAEVVGIDISEEAIEKAK--ENAKKLGYENVEF 58

Query: 181 LQAVGEAIP---VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
           +Q   E +P   + D S D V+   VL  + D D  L+E+ RVLKPGG+ +  + V   +
Sbjct: 59  IQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSE 118

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
           E  +A   ++L   L+    +VL+IG GTG  L+    +    V GVDP+          
Sbjct: 6   ERFLARLLARLLPRLK-PGGRVLDIGCGTGILLRL-LRERGFDVTGVDPSPAAV------ 57

Query: 168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIY 227
                       F         V     D +    VL  + D    LQ++R +LKPGG+ 
Sbjct: 58  ----------LIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107

Query: 228 LFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI-SEAGF 274
           L    +A  D      W  +      I       + ++   +  +AGF
Sbjct: 108 LISTPLADDDARLFANWHYLRPRNTHI----SFYSEESLKRLLEKAGF 151

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 130 LEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEA 187
           L+IG GTG  L+        ++  GVD +    + A      A L L +   ++  V +A
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERL--AALGLLDAVRVRLDVLDA 58

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIY 227
           I +   S D VV + VL  + D    L+ +RR+LKPGG+ 
Sbjct: 59  IDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
              +VL+IG GTG      A      +V GVD + +M + A+  A  A  P     F+Q 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP--RITFVQG 58

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232
                       DAV    +     D+   L  +  +LKPGG  +    
Sbjct: 59  DAPDALDLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
           K +KVL++  GTG     L   A D   +V GVD + +M + A+  +        N +F+
Sbjct: 39  KGQKVLDVACGTGDLAIELAKSAPDR-GKVTGVDFSSEMLEVAKKKSELPL----NIEFI 93

Query: 182 QAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241
           QA  EA+P  D S DAV     L +V D+   L+E+ RVLKPGG  + +E     +    
Sbjct: 94  QADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLK 153

Query: 242 KFW----QNVVDPLQQIVS 256
           KF+    +NV+  +  ++S
Sbjct: 154 KFYKFYLKNVLPSIGGLIS 172

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
           KVL++  GTG      A       +V+G+D +  M    +      GL   N +F+Q   
Sbjct: 54  KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSG-NVEFVQGDA 112

Query: 186 EAIPVSDASVDAVV---GTLVLCSVKDVDMTLQEVRRVLKPGG 225
           EA+P  D S DAV    G   L +V D+D  L+E+ RVLKPGG
Sbjct: 113 EALPFPDNSFDAVTIAFG---LRNVPDIDKALREMYRVLKPGG 152

Length = 239

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
             VL+IG GTG   +         + +  D +  M   A+T          N +F+    
Sbjct: 36  ASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSE------NVQFICGDA 89

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
           E +P+ D+S D +V  L L    D+   L E+ RVLKPGG+  F
Sbjct: 90  EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAF 133

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 129 VLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188
           +L++G GTG  L+  A      V GVD +++  + A+      G  +   +F+ A    +
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKV---RFVVADARDL 57

Query: 189 PVSDASVDAVV---GTLVLCSVKDVDMTLQEVRRVLKPGG 225
           P  + S D V+    +L   S K +   L+E  R+L+PGG
Sbjct: 58  PFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           +V+GVD   +M   A+  A  AG   TN +F     EA+PV+D SVD ++   V+    D
Sbjct: 104 KVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISNCVINLSPD 161

Query: 210 VDMTLQEVRRVLKPGG 225
            +   +E  RVLKPGG
Sbjct: 162 KERVFKEAFRVLKPGG 177

Length = 272

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           +V+G+D N  M K  +  A   G    N +FLQ   E +P  D S D V  +  L +  D
Sbjct: 74  KVVGLDINENMLKEGEKKAKEEGK--YNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPD 131

Query: 210 VDMTLQEVRRVLKPGGIYLFVE 231
               L+E  RVLKPGG  + +E
Sbjct: 132 YLKVLKEAFRVLKPGGRVVCLE 153

Length = 233

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 39/205 (19%)

Query: 94  EFYASVMNSSMK------------SYEAEVAGYKSQLFDNLRGKA-KKVLEIGIGTGPNL 140
           +FY   ++ SM               EA+ A     + + L  K    +L+IG G G   
Sbjct: 29  DFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKL-DLILEKLGLKPGMTLLDIGCGWGGLA 87

Query: 141 KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP------LTNFKFLQAVGEAIPVSDAS 194
            Y A +  V V+GV  + +   YA+    A GL       L +++  +   + I     S
Sbjct: 88  IYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI----VS 143

Query: 195 VDA--VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ 252
           V     VG       ++ D   ++V  +LKPGG  L             + ++   D + 
Sbjct: 144 VGMFEHVG------KENYDDFFKKVYALLKPGGRMLLHSITGPD-----QEFRRFPDFID 192

Query: 253 QIVSDGCHLT--RQTGNNISEAGFS 275
           + +  G  L    +     SEAGF 
Sbjct: 193 KYIFPGGELPSISEILELASEAGFV 217

Length = 283

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 128 KVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAV 184
           +VL+ G G+G      AA    D +V+GV+ +   E  A      A   L    + +   
Sbjct: 3   RVLDPGAGSG-AFLLAAARAGPDARVVGVELDP--EAAALARRRLALAGLAPRVRVVVGD 59

Query: 185 GEAIPV-SDASVDAVVGTLVLCSV--------KDVDMTLQEVRRVLKPGGIYLFV 230
              +    D S D V+G                  D  L    R+LKPGG+ + +
Sbjct: 60  ARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 100 MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRK 159
           +N     Y  EVA  +  L         +VL++G G G  L    A     V G+D + K
Sbjct: 40  INPLRLDYIREVARLRFDLP------GLRVLDVGCGGG-ILSEPLARLGASVTGIDASEK 92

Query: 160 MEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRR 219
             + A+  A+ +G+   N  + QA  E +  +    D V    VL  V D +  L+   +
Sbjct: 93  PIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAK 149

Query: 220 VLKPGGIYLF 229
           ++KPGGI   
Sbjct: 150 LVKPGGILFL 159

Length = 243

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 26/117 (22%)

Query: 122 LRGKAKKVLEIGIGTGPNLKYY--------AADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
           L  KA  +L+IG G G    YY           T +Q+ G+D ++   KYA     A   
Sbjct: 82  LDEKATALLDIGCGEG----YYTHALADALPEITTMQLFGLDISKVAIKYA-----AKRY 132

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230
           P     F  A    +P +D S+DA++     C  K      +E+ RV+KPGGI + V
Sbjct: 133 P--QVTFCVASSHRLPFADQSLDAIIRIYAPC--KA-----EELARVVKPGGIVITV 180

Length = 272

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 129 VLEIGIGTGPNLKYY-AADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           VL+ G G G   +Y+    + V  L + P    +   + AA           +L    E+
Sbjct: 46  VLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIES 96

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
           +P++ A+ D     L +    ++   L+E+ RV++PGG+  F   V        + WQ V
Sbjct: 97  LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAV 156

Query: 248 VD 249
            +
Sbjct: 157 DE 158

Length = 251

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
            V+G+D +  M    +     AGL   N + +      +P  D S D V     L +V D
Sbjct: 72  HVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD 129

Query: 210 VDMTLQEVRRVLKPGG 225
               L+E+ RV+KPGG
Sbjct: 130 YMQVLREMYRVVKPGG 145

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 32/185 (17%)

Query: 129 VLEIGIGTGPNLKYYAAD---TDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAV 184
           VL++  G+G +L +  ++   +D +V+G+D +  ++   A    + A     N ++++  
Sbjct: 77  VLDLCCGSG-DLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD 135

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLK 242
              +P  D   DA+     L +V D    +QE+ RVLKPG     ++   +     T ++
Sbjct: 136 ATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ 195

Query: 243 FW--QNVVDPLQQIVSDGCHLTRQ------------TGNNIS----EAGFSSV---ELGN 281
            W   NVV P    V+ G  L ++            TG  +     EAGFSS    E+  
Sbjct: 196 EWMIDNVVVP----VATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISG 251

Query: 282 AFLSN 286
             + N
Sbjct: 252 GLMGN 256

Length = 261

>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only]

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 137 GPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF-LQAVGEAIPVSDAS 194
           GP  K YA    ++         ++   A+    A    +      L A  +   V  A 
Sbjct: 71  GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTAQ 130

Query: 195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA 235
               +                 V + LKPGG+YL  +H A 
Sbjct: 131 NYHDM-HNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD 170

Length = 238

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 40/143 (27%)

Query: 118 LFDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
           L +N   K   +VLE+G G+G  +   AA    +V+GVD N    + A+  A    +   
Sbjct: 15  LAENAVDKKGDRVLEVGTGSG-IVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNN 73

Query: 177 NFKFLQA--VGEAIPVSDASVDAVV---------------------------GTLVLCSV 207
             + +++       P      D ++                           G  V+   
Sbjct: 74  GVEVIRSDLFE---PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVI--- 127

Query: 208 KDVDMTLQEVRRVLKPGGIYLFV 230
              D  L EV R LKPGG  L +
Sbjct: 128 ---DRFLDEVGRYLKPGGRILLL 147

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG4300	252	consensus Predicted methyltransferase [General fun	99.96
PLN02244	340	tocopherol O-methyltransferase	99.94
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.94
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.94
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.93
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.91
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.9
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.9
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.89
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.88
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.87
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.86
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.86
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.86
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.85
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.85
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.85
PLN02490	340	MPBQ/MSBQ methyltransferase	99.84
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.84
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.84
PLN02336	475	phosphoethanolamine N-methyltransferase	99.84
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.83
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.83
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.83
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.83
PRK05785	226	hypothetical protein; Provisional	99.82
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.82
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.82
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.81
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.8
PRK08317	241	hypothetical protein; Provisional	99.8
PRK11207	197	tellurite resistance protein TehB; Provisional	99.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.79
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.79
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.78
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.78
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.78
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.77
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.76
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.76
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.75
PRK06202	232	hypothetical protein; Provisional	99.74
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.74
PRK12335	287	tellurite resistance protein TehB; Provisional	99.73
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.72
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.72
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.71
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.71
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.71
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.7
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.7
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.69
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.69
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.68
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.67
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.67
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.66
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.66
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.66
PLN02336	475	phosphoethanolamine N-methyltransferase	99.66
PRK06922	677	hypothetical protein; Provisional	99.65
KOG1271	227	consensus Methyltransferases [General function pre	99.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.64
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.63
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.62
KOG2361	264	consensus Predicted methyltransferase [General fun	99.62
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.62
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.61
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.61
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.61
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.61
PLN03075	296	nicotianamine synthase; Provisional	99.61
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.61
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.6
PRK04266	226	fibrillarin; Provisional	99.6
PRK14968	188	putative methyltransferase; Provisional	99.6
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.6
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.6
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.59
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.57
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.57
PRK14967	223	putative methyltransferase; Provisional	99.57
TIGR03438	301	probable methyltransferase. This model represents	99.56
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.56
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.55
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.54
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.53
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.51
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.5
PTZ00146	293	fibrillarin; Provisional	99.5
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.49
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
PRK07402	196	precorrin-6B methylase; Provisional	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.47
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.47
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.47
KOG2940	325	consensus Predicted methyltransferase [General fun	99.46
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.46
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.46
COG4123	248	Predicted O-methyltransferase [General function pr	99.45
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.43
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.42
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.42
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.42
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.41
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.41
KOG3010	261	consensus Methyltransferase [General function pred	99.4
PHA03411	279	putative methyltransferase; Provisional	99.4
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.39
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.39
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.39
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.38
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.38
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.36
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.36
PRK00811	283	spermidine synthase; Provisional	99.36
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.35
TIGR00438	188	rrmJ cell division protein FtsJ.	99.34
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.33
COG2890	280	HemK Methylase of polypeptide chain release factor	99.32
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.32
PRK03612	521	spermidine synthase; Provisional	99.32
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.32
KOG2899	288	consensus Predicted methyltransferase [General fun	99.31
PRK01581	374	speE spermidine synthase; Validated	99.3
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.3
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.29
PRK04457	262	spermidine synthase; Provisional	99.29
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.29
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.29
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.28
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.28
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.27
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.27
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.27
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.27
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.25
COG2521	287	Predicted archaeal methyltransferase [General func	99.25
PLN02366	308	spermidine synthase	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.22
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.21
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.21
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.21
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.19
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.19
PLN02476	278	O-methyltransferase	99.18
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.17
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.17
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.16
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.15
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.15
COG4122	219	Predicted O-methyltransferase [General function pr	99.14
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.13
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.11
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.11
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.11
PLN02672	1082	methionine S-methyltransferase	99.11
KOG2904	328	consensus Predicted methyltransferase [General fun	99.1
PHA03412	241	putative methyltransferase; Provisional	99.08
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.07
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.07
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.06
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.05
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	99.02
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.98
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.98
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.97
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.97
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.96
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.95
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.94
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.94
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.88
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.88
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.86
PLN02823	336	spermine synthase	98.84
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.83
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.83
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.83
KOG1331	293	consensus Predicted methyltransferase [General fun	98.82
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.81
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.79
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.78
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.76
PRK00536	262	speE spermidine synthase; Provisional	98.76
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.75
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.73
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.71
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.71
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.71
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.7
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.69
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.69
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.69
COG2520	341	Predicted methyltransferase [General function pred	98.69
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.67
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.67
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.66
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.65
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.64
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.62
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.62
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.61
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.59
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.52
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.49
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.46
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.44
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.44
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.39
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.39
PRK04148	134	hypothetical protein; Provisional	98.38
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.38
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.36
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.35
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.32
COG3897	218	Predicted methyltransferase [General function pred	98.3
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.29
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.28
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.27
PF13679	141	Methyltransf_32: Methyltransferase domain	98.24
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.21
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.21
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.13
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.1
COG4798	238	Predicted methyltransferase [General function pred	98.07
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.05
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.04
COG4076	252	Predicted RNA methylase [General function predicti	98.0
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.98
KOG3115	249	consensus Methyltransferase-like protein [General	97.98
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.98
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.96
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.92
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.91
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.9
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.89
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.88
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.87
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.82
KOG2730	263	consensus Methylase [General function prediction o	97.77
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.76
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.74
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.73
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.64
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.62
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.61
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.58
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.54
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.53
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.5
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.45
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.39
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.38
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.32
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.29
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.25
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	97.16
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.05
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.02
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.9
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.82
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.71
PHA01634	156	hypothetical protein	96.5
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.44
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.43
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.36
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.36
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.35
PRK10742	250	putative methyltransferase; Provisional	96.31
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.22
COG1565	370	Uncharacterized conserved protein [Function unknow	96.2
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.11
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.1
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	96.07
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.05
KOG2920	282	consensus Predicted methyltransferase [General fun	96.05
PRK11524	284	putative methyltransferase; Provisional	96.01
COG0286	489	HsdM Type I restriction-modification system methyl	95.97
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.92
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.86
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.85
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.83
PRK13699	227	putative methylase; Provisional	95.79
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.68
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.59
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.48
PRK13699	227	putative methylase; Provisional	95.46
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	95.43
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.41
KOG1227	351	consensus Putative methyltransferase [General func	95.36
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.14
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.12
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.07
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.0
KOG3924	419	consensus Putative protein methyltransferase invol	94.96
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.73
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.67
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.65
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	94.61
PTZ00357	1072	methyltransferase; Provisional	94.47
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.28
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.22
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.11
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.08
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.71
COG4301	321	Uncharacterized conserved protein [Function unknow	93.71
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.46
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	93.34
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.3
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.29
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.03
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	92.98
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	92.79
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.66
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.63
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	92.55
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.38
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.34
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	91.77
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.71
PRK10458	467	DNA cytosine methylase; Provisional	91.31
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.1
KOG2352	482	consensus Predicted spermine/spermidine synthase [	90.82
PRK11524	284	putative methyltransferase; Provisional	90.5
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.16
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.03
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.91
KOG2078	495	consensus tRNA modification enzyme [RNA processing	89.32
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.12
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.04
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.02
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	88.94
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.8
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	88.6
COG1568	354	Predicted methyltransferases [General function pre	88.59
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.34
PLN02586	360	probable cinnamyl alcohol dehydrogenase	88.18
TIGR00497	501	hsdM type I restriction system adenine methylase (	88.17
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.13
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	88.13
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.84
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	87.71
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	87.7
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	87.42
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	87.01
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	86.54
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	86.34
PLN02514	357	cinnamyl-alcohol dehydrogenase	86.26
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	85.87
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	84.81
PLN02740	381	Alcohol dehydrogenase-like	84.41
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	84.25
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	84.15
cd01842	183	SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG	84.14
PRK03659	601	glutathione-regulated potassium-efflux system prot	84.06
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	83.98
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	83.13
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	83.12
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.02
PRK07576	264	short chain dehydrogenase; Provisional	82.28
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	82.14
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	81.66
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	81.61
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	81.02
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	80.98
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	80.85
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	80.71
PLN02178	375	cinnamyl-alcohol dehydrogenase	80.5
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	80.42
PRK12939	250	short chain dehydrogenase; Provisional	80.19

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=184.82  Aligned_cols=218  Identities=36%  Similarity=0.545  Sum_probs=184.2

Q ss_pred             HHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH
Q 022248           79 AMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR  158 (300)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~  158 (300)
                      ..++...+....++...+..+++..+..|.+.+-.-+..++-.  .....|||||||+|..-..+-..++..++++|+++
T Consensus        32 ~n~~~~~~~~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk--~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~  109 (252)
T KOG4300|consen   32 LNYESRQKSDLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGK--SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNE  109 (252)
T ss_pred             HHHHhcCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHhcc--cCccceEEecccCCCCcccccCCCCceEEEeCCcH
Confidence            3344555666677888888887777777765444433323221  23456899999999877666545788999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCEE-EEecccCcCC-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          159 KMEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       159 ~~~~~a~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      .|-+.+.+.+++..  +.++. |+.++.+++| +++++||.|++.++++.+.|+.+.|+++.|+|+|||++++.+++...
T Consensus       110 ~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  110 KMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             HHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            99999999998874  35777 9999999998 89999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCccc-ccceeeEEecC
Q 022248          237 DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASL-ISPHVYGIAHK  300 (300)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~-~~~~~~~~~~k  300 (300)
                      .+.+.+.++....+.++....+|....+..++|+++-|+.++..+......|. ..|++||.+.|
T Consensus       188 y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V~~hi~g~~~k  252 (252)
T KOG4300|consen  188 YGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIVEPHIYGVAVK  252 (252)
T ss_pred             chHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcccCCceEEEEeccccccccC
Confidence            99999999999999999888899888899999999999999999988888888 78999999876

>PLN02244 tocopherol O-methyltransferase

Probab=99.94  E-value=4.3e-25  Score=194.45  Aligned_cols=207  Identities=16%  Similarity=0.163  Sum_probs=148.3

Q ss_pred             hHHHHhhcCCCCchhHHHHHHHHH-----hhh--hHhHHHHHHHHHHHHHHhhc------CCCCeEEEECCCCChhHHHh
Q 022248           77 SMAMLNRLHPPRPDWYEEFYASVM-----NSS--MKSYEAEVAGYKSQLFDNLR------GKAKKVLEIGIGTGPNLKYY  143 (300)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~vLDiGcG~G~~~~~l  143 (300)
                      ..+-+..+.....++|+..|...+     ...  ...+.+.-.+...++++.+.      .++.+|||||||+|.++..+
T Consensus        57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L  136 (340)
T PLN02244         57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYL  136 (340)
T ss_pred             HHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence            344455555556667776664322     111  12233333445555555543      35689999999999999999


Q ss_pred             HhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccC
Q 022248          144 AADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKP  223 (300)
Q Consensus       144 ~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lkp  223 (300)
                      ++..+.+++|+|+|+.+++.++++.+..++. ++++|+++|+..+++++++||+|++..+++|+++...+++++.++|||
T Consensus       137 a~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkp  215 (340)
T PLN02244        137 ARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAP  215 (340)
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCC
Confidence            8866789999999999999999998887764 579999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecccCCC----chHHHHHHHhhhhhh-hhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          224 GGIYLFVEHVAAKD----GTFLKFWQNVVDPLQ-QIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       224 gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ||++++.++.....    ..........+..+. ........+.+++.++++++||+.++++.+..
T Consensus       216 GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~  281 (340)
T PLN02244        216 GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE  281 (340)
T ss_pred             CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence            99999987643211    111111111111111 11122345778999999999999999886543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.94  E-value=1.1e-25  Score=184.95  Aligned_cols=169  Identities=28%  Similarity=0.393  Sum_probs=135.2

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      .|.+.+...+. .++.+|||||||||.++..+++. ...+++|+|+|+.|++.|+++....+..  +++|+++|++.+||
T Consensus        38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf  115 (238)
T COG2226          38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPF  115 (238)
T ss_pred             HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCC
Confidence            45555555544 36899999999999999999873 4579999999999999999999888764  49999999999999


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH----H-hhhhhhhhhc---------
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ----N-VVDPLQQIVS---------  256 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~---------  256 (300)
                      ++++||+|++.+.|++++|.+.+|+|++|+|||||++++.+......+.......    + .++.+.....         
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL  195 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYL  195 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHH
Confidence            9999999999999999999999999999999999999999987766543332222    2 2222222111         


Q ss_pred             ----CCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          257 ----DGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       257 ----~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                          ....+.+++.++++++||+.+..+...
T Consensus       196 ~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~  226 (238)
T COG2226         196 AESIRRFPDQEELKQMIEKAGFEEVRYENLT  226 (238)
T ss_pred             HHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence                124567899999999999988855443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.94  E-value=1.7e-26  Score=191.89  Aligned_cols=159  Identities=27%  Similarity=0.401  Sum_probs=93.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+|+.|++.|+++.+..+..  +++++++|++++|+++++||+|++.
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcCCCCceeEEEHH
Confidence            46789999999999999999874  4579999999999999999999988764  8999999999999999999999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhhhhhc-------------CCcccchH
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQQIVS-------------DGCHLTRQ  264 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~~~~~~~  264 (300)
                      +++++++|....++|++|+|||||+++++++..........++..++.    .+.....             ..+.+.++
T Consensus       124 fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~  203 (233)
T PF01209_consen  124 FGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEE  203 (233)
T ss_dssp             S-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------
T ss_pred             hhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999888765444333332221    1111111             12456789


Q ss_pred             HHHHHHhcCCcEEEEeeecc
Q 022248          265 TGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       265 ~~~~l~~aGf~~v~~~~~~~  284 (300)
                      +.++|+++||+.++.+....
T Consensus       204 ~~~~l~~~Gf~~v~~~~~~~  223 (233)
T PF01209_consen  204 LKELLEEAGFKNVEYRPLTF  223 (233)
T ss_dssp             --------------------
T ss_pred             cccccccccccccccccccc
Confidence            99999999999988865544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.93  E-value=3e-24  Score=185.95  Aligned_cols=156  Identities=16%  Similarity=0.115  Sum_probs=122.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..+++ .+.+|+|||+++.+++.|+++....+.. .++.+++++++++++.+++||+|++..++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            567999999999999998886 5779999999999999999887655432 47999999999998888899999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH-----HHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW-----QNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      +|+.++..+++++.++|||||.+++.+.+...........     ....... ......+++++++.++|+++||+++++
T Consensus       209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g-th~~~~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG-THQWSSFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC-CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999999999986553221111111     1111111 111123678899999999999999888


Q ss_pred             eeec
Q 022248          280 GNAF  283 (300)
Q Consensus       280 ~~~~  283 (300)
                      .-..
T Consensus       288 ~G~~  291 (322)
T PLN02396        288 AGFV  291 (322)
T ss_pred             eeeE
Confidence            6433

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.91  E-value=1.1e-22  Score=172.73  Aligned_cols=160  Identities=20%  Similarity=0.216  Sum_probs=123.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+|+.|++.|+++...  ... .+++.++++|++.+|+++++||+|+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-YKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-CCCeEEEEcccccCCCCCCCEeEEE
Confidence            46789999999999999888764  346999999999999999877532  111 2479999999999999999999999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh----hhhhh------------hhcCCcccch
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV----DPLQQ------------IVSDGCHLTR  263 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~----~~~~~------------~~~~~~~~~~  263 (300)
                      +.+++++++++..+++++.|+|||||++++.++..............++    .+...            .....+.+.+
T Consensus       151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~  230 (261)
T PLN02233        151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE  230 (261)
T ss_pred             EecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999999999987654322221111111    01100            0012367889


Q ss_pred             HHHHHHHhcCCcEEEEeeecc
Q 022248          264 QTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ++.++|+++||+.++......
T Consensus       231 el~~ll~~aGF~~~~~~~~~~  251 (261)
T PLN02233        231 ELEKLALEAGFSSAKHYEISG  251 (261)
T ss_pred             HHHHHHHHCCCCEEEEEEcCC
Confidence            999999999999988766443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.90  E-value=8.1e-22  Score=165.31  Aligned_cols=167  Identities=22%  Similarity=0.274  Sum_probs=128.5

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      ...++..+. .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.++++....++  ++++++.+|++.++++
T Consensus        34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCCCC
Confidence            344444444 45789999999999999999874  456999999999999999999877665  4899999999998888


Q ss_pred             CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhh-------------hh
Q 022248          192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQ-------------QI  254 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~  254 (300)
                      +++||+|++.++++++++...+++++.++|+|||++++.+........+...+..++.    ...             ..
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence            8999999999999999999999999999999999999988655433222222111110    000             00


Q ss_pred             hcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          255 VSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       255 ~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ....+.+.+++.++|+++||+.++++...
T Consensus       192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  220 (231)
T TIGR02752       192 STRDFPGMDELAEMFQEAGFKDVEVKSYT  220 (231)
T ss_pred             HHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence            11235677899999999999999887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.90  E-value=2.8e-22  Score=161.76  Aligned_cols=162  Identities=27%  Similarity=0.375  Sum_probs=129.1

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhC-------CCceEEEEcCCHHHHHHHHHHHHHcCCCCC-CEEEEecccCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAVGEA  187 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~d~~~  187 (300)
                      .++..+. ..+.++||++||||..+..+.+.       .+.+|+++|+++.|+..++++.++.++... ++.|+++|+++
T Consensus        91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            3444443 46799999999999999999873       236899999999999999999988877532 49999999999


Q ss_pred             CCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH----Hhhhhhhhhhc-------
Q 022248          188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ----NVVDPLQQIVS-------  256 (300)
Q Consensus       188 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------  256 (300)
                      +||++.+||+.++.+.+.+++++++.++|++|+|||||++.+.++..........+.+    ..++.+..+..       
T Consensus       171 LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq  250 (296)
T KOG1540|consen  171 LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ  250 (296)
T ss_pred             CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence            9999999999999999999999999999999999999999999987665333322222    22222222221       


Q ss_pred             ------CCcccchHHHHHHHhcCCcEEE
Q 022248          257 ------DGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       257 ------~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                            ..+.+.+++..+.+++||..+.
T Consensus       251 YLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  251 YLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                  2345678999999999999887

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.89  E-value=2.7e-22  Score=171.90  Aligned_cols=161  Identities=26%  Similarity=0.452  Sum_probs=121.1

Q ss_pred             ccccCCCchhhhhhhh--cccCCcccCCCCCCCCCCCChHHHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q 022248           41 KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQL  118 (300)
Q Consensus        41 ~~~~c~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (300)
                      .++.|.++|+|+.+++  ++++|.    +.+.++.|++..+|+..+.    .|+        +.+.  |.. +.+.+..+
T Consensus        17 ~~~~C~~~h~fd~a~~Gy~~ll~~----~~~~~~~~~d~~~~~~ar~----~fl--------~~g~--y~~-l~~~i~~~   77 (272)
T PRK11088         17 NSWICPQNHQFDCAKEGYVNLLPV----QHKRSKDPGDNKEMMQARR----AFL--------DAGH--YQP-LRDAVANL   77 (272)
T ss_pred             CEEEcCCCCCCccccCceEEeccc----cccCCCCCCcCHHHHHHHH----HHH--------HCCC--hHH-HHHHHHHH
Confidence            3599999999999987  888887    6677788899999998764    222        1111  222 22222222


Q ss_pred             HH-hhcCCCCeEEEECCCCChhHHHhHhCC----CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          119 FD-NLRGKAKKVLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       119 ~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +. .+.....+|||+|||+|.++..+++..    ..+++|+|+|+.+++.|+++.       +++.|.++|+..+|++++
T Consensus        78 l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~  150 (272)
T PRK11088         78 LAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQ  150 (272)
T ss_pred             HHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCC
Confidence            32 233455789999999999999887631    247999999999999998763       478899999999999999


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +||+|++.+...       .++++.|+|||||+++++.+..
T Consensus       151 sfD~I~~~~~~~-------~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        151 SLDAIIRIYAPC-------KAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             ceeEEEEecCCC-------CHHHHHhhccCCCEEEEEeCCC
Confidence            999999876532       3589999999999999987543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.88  E-value=2.5e-22  Score=162.16  Aligned_cols=157  Identities=20%  Similarity=0.214  Sum_probs=124.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||.|.++..+++ .++.|+|+|+++.+++.|+.+..+.++   .+++.+...+++....++||+|+|..+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~cmEV  133 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEV  133 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEEhhH
Confidence            3789999999999999999997 468999999999999999999998886   578888888888766689999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-Hhh-hhh--hhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-NVV-DPL--QQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      ++|++|++.+++.+.+.+||||.+++++.++........... +++ ...  .......+..++|+...+..+|+.+...
T Consensus       134 lEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~  213 (243)
T COG2227         134 LEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR  213 (243)
T ss_pred             HHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence            999999999999999999999999999987654433322221 111 111  1111123445678889999999998877


Q ss_pred             eeecc
Q 022248          280 GNAFL  284 (300)
Q Consensus       280 ~~~~~  284 (300)
                      .....
T Consensus       214 ~g~~y  218 (243)
T COG2227         214 KGLTY  218 (243)
T ss_pred             cceEe
Confidence            65443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.87  E-value=4.6e-21  Score=163.07  Aligned_cols=159  Identities=19%  Similarity=0.267  Sum_probs=123.7

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      ..++..+. .++.+|||||||+|..+..++...+.+++|+|+++.+++.|+++....    .++.+..+|+...++++++
T Consensus        42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCcccCCCCCCC
Confidence            34444443 577899999999999999888755779999999999999999876431    4799999999988998899


Q ss_pred             ccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          195 VDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       195 ~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      ||+|++..+++|++  +...++++++++|||||++++.++..................    ......+.+++.++|+++
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~a  193 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKK----RKYTLIPIQEYGDLIKSC  193 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHh----cCCCCCCHHHHHHHHHHC
Confidence            99999998888875  778999999999999999999987554322222222221111    112356778999999999


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||+.++.+..
T Consensus       194 GF~~v~~~d~  203 (263)
T PTZ00098        194 NFQNVVAKDI  203 (263)
T ss_pred             CCCeeeEEeC
Confidence            9999988753

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.86  E-value=2.5e-20  Score=157.48  Aligned_cols=168  Identities=16%  Similarity=0.215  Sum_probs=123.1

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      ...++.....++.+|||||||+|.++..+++   .++.+++|+|+|+.|++.|++++...+.. .+++++++|+..++++
T Consensus        46 ~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~~~~  124 (247)
T PRK15451         46 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRDIAIE  124 (247)
T ss_pred             HHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhhCCCC
Confidence            3344444445778999999999999888876   36789999999999999999999877653 4799999999888764


Q ss_pred             CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh-----------hh---hh
Q 022248          192 DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-----------QQ---IV  255 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~  255 (300)
                        .+|+|+++.+++++++  ...++++++++|||||.|++.+...........++..+....           ..   ..
T Consensus       125 --~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~  202 (247)
T PRK15451        125 --NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML  202 (247)
T ss_pred             --CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence              5999999999999864  357899999999999999999865443322222111111000           00   00


Q ss_pred             --cCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          256 --SDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       256 --~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                        .....+.++..++|+++||+.++......+
T Consensus       203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~  234 (247)
T PRK15451        203 ENVMLTDSVETHKARLHKAGFEHSELWFQCFN  234 (247)
T ss_pred             HhhcccCCHHHHHHHHHHcCchhHHHHHHHHh
Confidence              112346789999999999998776655444

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.86  E-value=9.5e-21  Score=160.93  Aligned_cols=165  Identities=24%  Similarity=0.254  Sum_probs=124.6

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDA  193 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  193 (300)
                      +..+++.+..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....++. ++++++++|+.+++ +.++
T Consensus        34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhhhcCC
Confidence            34455555556789999999999999999875 679999999999999999999888764 57999999998763 5678


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhh-----hhhcCCcccchH
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQ-----QIVSDGCHLTRQ  264 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~  264 (300)
                      +||+|++..+++++.++..+++++.++|||||++++..++.... .....+...+.    ...     ........++++
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  190 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGL-LMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ  190 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHH-HHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999887554211 01111110000    000     000122456789


Q ss_pred             HHHHHHhcCCcEEEEeee
Q 022248          265 TGNNISEAGFSSVELGNA  282 (300)
Q Consensus       265 ~~~~l~~aGf~~v~~~~~  282 (300)
                      +.++|+++||+++...-.
T Consensus       191 l~~~l~~aGf~~~~~~gi  208 (255)
T PRK11036        191 VYQWLEEAGWQIMGKTGV  208 (255)
T ss_pred             HHHHHHHCCCeEeeeeeE
Confidence            999999999998866543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.86  E-value=2.9e-20  Score=158.03  Aligned_cols=155  Identities=15%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ...+++.+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|++.         +++++.+|++.++ ++
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~   87 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PK   87 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CC
Confidence            344555554 46789999999999999999874 467999999999999999763         5788999998775 56


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh---------hhhhhhhcCCcccch
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV---------DPLQQIVSDGCHLTR  263 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  263 (300)
                      ++||+|++..++++++++..++++++++|||||++++..+.... ...........         ............+.+
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  166 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA  166 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence            79999999999999999999999999999999999997543211 11111111111         000000112345788


Q ss_pred             HHHHHHHhcCCcEEEEe
Q 022248          264 QTGNNISEAGFSSVELG  280 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~  280 (300)
                      ++.++|+++||++...+
T Consensus       167 ~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        167 GYAELLTDAGCKVDAWE  183 (255)
T ss_pred             HHHHHHHhCCCeEEEEe
Confidence            99999999999855444

>TIGR00740 methyltransferase, putative

Probab=99.85  E-value=6.4e-20  Score=154.45  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=120.5

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      +......++.+|||+|||+|.++..+++.   ++.+++|+|+|+.|++.|+++++..+.. .++.++++|+..++++  .
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~--~  122 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEIK--N  122 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCCC--C
Confidence            33344457789999999999999988863   5789999999999999999998776543 4789999999988765  5


Q ss_pred             ccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh--------------hh--hc
Q 022248          195 VDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ--------------QI--VS  256 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~  256 (300)
                      +|+|++.++++++++  ...++++++++|||||.+++.+.....+......+........              ..  ..
T Consensus       123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  202 (239)
T TIGR00740       123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENV  202 (239)
T ss_pred             CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence            899999999999853  5679999999999999999998765443332222222111100              00  01


Q ss_pred             CCcccchHHHHHHHhcCCcEEEEeee
Q 022248          257 DGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       257 ~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ....+.+++..+++++||..+++...
T Consensus       203 ~~~~s~~~~~~~l~~aGF~~~~~~~~  228 (239)
T TIGR00740       203 MRTDSIETHKARLKNVGFSHVELWFQ  228 (239)
T ss_pred             CCCCCHHHHHHHHHHcCCchHHHHHH
Confidence            12457789999999999997665433

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.85  E-value=3.6e-20  Score=161.56  Aligned_cols=156  Identities=19%  Similarity=0.200  Sum_probs=115.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..++......|+|+|+|+.++.+++...+..+. ..++.++.++++.+++ ++.||+|+|..+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-~~~i~~~~~d~e~lp~-~~~FD~V~s~~v  198 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-DQRAHLLPLGIEQLPA-LKAFDTVFSMGV  198 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence            46789999999999999999876555799999999998776554333222 1479999999999988 789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|..++..++++++++|+|||.+++.+.....+.....+....+..+...+  ...+.+++.++|+++||+.+++....
T Consensus       199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~--~lps~~~l~~~L~~aGF~~i~~~~~~  276 (322)
T PRK15068        199 LYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY--FIPSVPALKNWLERAGFKDVRIVDVS  276 (322)
T ss_pred             hhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce--eCCCHHHHHHHHHHcCCceEEEEeCC
Confidence            9999999999999999999999999876543322211100001111111110  13467899999999999999887543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.85  E-value=5.3e-21  Score=151.14  Aligned_cols=140  Identities=26%  Similarity=0.302  Sum_probs=106.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||.|.++..+++. +.+++|+|+++.+++.       .     ++.....+....+.+++.||+|+|..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~   87 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-------R-----NVVFDNFDAQDPPFPDGSFDLIICNDV   87 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-------T-----TSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-------h-----hhhhhhhhhhhhhccccchhhHhhHHH
Confidence            57889999999999999999764 5599999999999888       1     333444444445556789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++|++++..+++++.++|||||++++.++....  .....+...........+..+++.+++..+++++||++++
T Consensus        88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD--PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS--HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc--hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999999999976532  1222222211111111233577889999999999999886

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.84  E-value=4e-20  Score=160.72  Aligned_cols=145  Identities=19%  Similarity=0.174  Sum_probs=115.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++. .+.+++++|+++.|++.|+++...     .+++++.+|+++++++++.||+|++..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~  186 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG  186 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence            35689999999999998888763 457899999999999999987542     367899999999999889999999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +++++++....++++.++|||||++++.+.....     .+..+.+...+    ....+.+++.++|+++||+.++++..
T Consensus       187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~~~~----~~~~t~eEl~~lL~~aGF~~V~i~~i  257 (340)
T PLN02490        187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFADVW----MLFPKEEEYIEWFTKAGFKDVKLKRI  257 (340)
T ss_pred             hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhhhhh----ccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence            9999999999999999999999999987654321     11111111111    12346789999999999999988754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.84  E-value=8.3e-20  Score=155.16  Aligned_cols=166  Identities=20%  Similarity=0.239  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      -.+.+..+++++. .++.+|||||||.|.++..+++..+.+|+|+++|+.+.+.++++++..|+. +++++...|..+++
T Consensus        47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~~~  125 (273)
T PF02353_consen   47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQDYRDLP  125 (273)
T ss_dssp             HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-GGG--
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEeeccccC
Confidence            3445556666655 688999999999999999999877889999999999999999999999986 68999999988775


Q ss_pred             CCCCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHH------HHHHHhhhhhhhhhcCCccc
Q 022248          190 VSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL------KFWQNVVDPLQQIVSDGCHL  261 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  261 (300)
                      .   +||.|++..+++|+  .+...+++++.++|||||++++-..+........      .++.+++-+     .+...+
T Consensus       126 ~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-----gg~lps  197 (273)
T PF02353_consen  126 G---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP-----GGYLPS  197 (273)
T ss_dssp             ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST-----TS---B
T ss_pred             C---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC-----CCCCCC
Confidence            3   89999999999999  5778999999999999999998776554332222      344444322     223456


Q ss_pred             chHHHHHHHhcCCcEEEEeeeccC
Q 022248          262 TRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       262 ~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ..++...++++||+++..+....+
T Consensus       198 ~~~~~~~~~~~~l~v~~~~~~~~h  221 (273)
T PF02353_consen  198 LSEILRAAEDAGLEVEDVENLGRH  221 (273)
T ss_dssp             HHHHHHHHHHTT-EEEEEEE-HHH
T ss_pred             HHHHHHHHhcCCEEEEEEEEcCcC
Confidence            778888999999999888765443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.84  E-value=6.9e-20  Score=143.51  Aligned_cols=143  Identities=27%  Similarity=0.419  Sum_probs=111.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|.++..+++  .++.+++|+|+++.+++.|+++++..++.  +++|+++|+.+++  ++ +.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhccccccC-CCeeEEEE
Confidence            578999999999999999994  45789999999999999999999988874  8999999999987  55 89999999


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh-hhhhhh--cCCcccchHHHHHHHhcC
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD-PLQQIV--SDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~aG  273 (300)
                      ..+++++.++..+++++.++|++||.+++.+.....  .....+..... ....+.  .... ..++|..+|++||
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag  152 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHND--ELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG  152 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH--HHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHH--HHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence            999999999999999999999999999998876211  11122221111 011110  0111 6779999999998

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.84  E-value=1.5e-19  Score=166.97  Aligned_cols=151  Identities=23%  Similarity=0.307  Sum_probs=120.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|..+..+++..+.+++|+|+|+.+++.|+++.....   .++.|+.+|+...++++++||+|++..+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~~fD~I~s~~~  341 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTYPDNSFDVIYSRDT  341 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCCCCCCEEEEEECCc
Confidence            4577999999999999998887667899999999999999988765332   4789999999998888889999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++|++++..++++++++|||||.+++.++......... .+...+..    ......+.+++.++++++||+++.++..
T Consensus       342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~l~~aGF~~i~~~d~  415 (475)
T PLN02336        342 ILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP-EFAEYIKQ----RGYDLHDVQAYGQMLKDAGFDDVIAEDR  415 (475)
T ss_pred             ccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH-HHHHHHHh----cCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence            99999999999999999999999999987553321111 11111111    1224567789999999999999877643

>TIGR00452 methyltransferase, putative

Probab=99.83  E-value=1.6e-19  Score=155.88  Aligned_cols=157  Identities=14%  Similarity=0.095  Sum_probs=112.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++++|||||||+|.++..++......++|+|+|+.|+.+++...+.... ..++.+...++++++.. +.||+|++..+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-~~~v~~~~~~ie~lp~~-~~FD~V~s~gv  197 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-DKRAILEPLGIEQLHEL-YAFDTVFSMGV  197 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-CCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence            46789999999999999888865445799999999999876443222221 14788888898888764 58999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|++++..++++++++|||||.|++.+............-...+..+...  ....+..++..+|+++||+.+++....
T Consensus       198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv--~flpS~~~L~~~L~~aGF~~V~i~~~~  275 (314)
T TIGR00452       198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV--YFIPSVSALKNWLEKVGFENFRILDVL  275 (314)
T ss_pred             hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc--ccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence            999999999999999999999999997654322110000000001111111  123467899999999999999887543


Q ss_pred             c
Q 022248          284 L  284 (300)
Q Consensus       284 ~  284 (300)
                      .
T Consensus       276 ~  276 (314)
T TIGR00452       276 K  276 (314)
T ss_pred             C
Confidence            3

Known examples to date are restricted to the proteobacteria.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.83  E-value=5.5e-19  Score=149.92  Aligned_cols=141  Identities=21%  Similarity=0.312  Sum_probs=112.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      +..+|||+|||+|.++..+++ .+.+++++|+|+.+++.++++.       ....++++|++.+++++++||+|+++.++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l  113 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD-------AADHYLAGDIESLPLATATFDLAWSNLAV  113 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC-------CCCCEEEcCcccCcCCCCcEEEEEECchh
Confidence            467999999999999988876 4679999999999999998764       23568899999999988999999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      ++++++..++.++.++|+|||.+++..+......++...+....   .......+.+.+++.+++...|++.
T Consensus       114 ~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        114 QWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVD---ERPHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             hhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhc---cCCccccCCCHHHHHHHHHhCCcee
Confidence            99999999999999999999999999876544333333332211   1111234667889999999988873

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.83  E-value=3.1e-19  Score=153.27  Aligned_cols=153  Identities=29%  Similarity=0.370  Sum_probs=120.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|..+..++..  ...+++++|+++.+++.|+++....++  .+++++.+|++.++++++.||+|++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEEEc
Confidence            46789999999999988776653  345899999999999999999887776  48999999999999888899999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      .++++.++...+++++.++|||||++++.+......  ....+..... ..........+.+++.++|+++||..+++..
T Consensus       154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAE-LYAGCVAGALQEEEYLAMLAEAGFVDITIQP  230 (272)
T ss_pred             CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHH-HHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence            999999999999999999999999999988654332  1111111111 1111112345678999999999999887753

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.83  E-value=3.5e-20  Score=133.08  Aligned_cols=95  Identities=34%  Similarity=0.486  Sum_probs=84.4

Q ss_pred             EEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCccc
Q 022248          130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD  209 (300)
Q Consensus       130 LDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~  209 (300)
                      ||+|||+|..+..+++..+.+++++|+++.+++.++++....     .+.+..+|++.+|+++++||+|++..+++++++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~   75 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED   75 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeeccC
Confidence            899999999999999876889999999999999999987543     466999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcccCCcEEEE
Q 022248          210 VDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       210 ~~~~l~~~~~~LkpgG~l~~  229 (300)
                      ...+++++.|+|||||++++
T Consensus        76 ~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   76 PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCcCeEEeC
Confidence            99999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK05785 hypothetical protein; Provisional

Probab=99.82  E-value=1.3e-18  Score=144.74  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=105.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..+++..+.+++|+|+|+.|++.|+++          ..++++|++.+|+++++||+|++.+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l  120 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFAL  120 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChh
Confidence            4789999999999999999875456999999999999999864          135789999999999999999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH----HHHhhhhhhhhhc-------------CCcccchHHHH
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF----WQNVVDPLQQIVS-------------DGCHLTRQTGN  267 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~  267 (300)
                      ++++|++..+++++|+|||.  +++++...........+    .....+.+.....             ..+.+.+++.+
T Consensus       121 ~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~  198 (226)
T PRK05785        121 HASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE  198 (226)
T ss_pred             hccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999994  22333333222211111    1112222211111             12456789999


Q ss_pred             HHHhcCCcEEEEeeec
Q 022248          268 NISEAGFSSVELGNAF  283 (300)
Q Consensus       268 ~l~~aGf~~v~~~~~~  283 (300)
                      +|+++| ..+..+...
T Consensus       199 ~~~~~~-~~~~~~~~~  213 (226)
T PRK05785        199 IFEKYA-DIKVYEERG  213 (226)
T ss_pred             HHHHHh-CceEEEEcc
Confidence            999974 656665543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=3.5e-19  Score=149.09  Aligned_cols=164  Identities=23%  Similarity=0.274  Sum_probs=134.5

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      ..++.+++.+. .++.+|||||||.|.+++.+++..+.+|+|+++|+++.+.++++++..|+. .+++++..|..++.  
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~--  135 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEeccccccc--
Confidence            33444555554 789999999999999999999988999999999999999999999999986 68999999988875  


Q ss_pred             CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248          192 DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGN  267 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (300)
                       +.||-|++..+++|+..  .+.+++.+.++|+|||.+++...+.....  ....|+.+++-+     ++.+.+..++.+
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFP-----gG~lPs~~~i~~  209 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFP-----GGELPSISEILE  209 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCC-----CCcCCCHHHHHH
Confidence             44999999999999965  88999999999999999999887665533  345555554433     223455688999


Q ss_pred             HHHhcCCcEEEEeeeccC
Q 022248          268 NISEAGFSSVELGNAFLS  285 (300)
Q Consensus       268 ~l~~aGf~~v~~~~~~~~  285 (300)
                      ...++||.+...+....+
T Consensus       210 ~~~~~~~~v~~~~~~~~h  227 (283)
T COG2230         210 LASEAGFVVLDVESLRPH  227 (283)
T ss_pred             HHHhcCcEEehHhhhcHH
Confidence            999999999888766555

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.82  E-value=2.6e-18  Score=144.71  Aligned_cols=157  Identities=29%  Similarity=0.392  Sum_probs=121.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++...++. .++.++.+|+...+++.+.||+|++..
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCCCCCccEEEEec
Confidence            56899999999999999998754  489999999999999999988665443 478999999988887778999999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh----hhhhhhhh-------------cCCcccchHH
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV----VDPLQQIV-------------SDGCHLTRQT  265 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~~~  265 (300)
                      +++++.+...+++++.++|+|||.+++.+................    ........             .....+.+++
T Consensus       130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (239)
T PRK00216        130 GLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEEL  209 (239)
T ss_pred             ccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999999999886554432221111111    00000000             0124567889


Q ss_pred             HHHHHhcCCcEEEEeee
Q 022248          266 GNNISEAGFSSVELGNA  282 (300)
Q Consensus       266 ~~~l~~aGf~~v~~~~~  282 (300)
                      .++|+++||+.+++...
T Consensus       210 ~~~l~~aGf~~~~~~~~  226 (239)
T PRK00216        210 AAMLEEAGFERVRYRNL  226 (239)
T ss_pred             HHHHHhCCCceeeeeee
Confidence            99999999999888754

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.81  E-value=8.8e-20  Score=148.34  Aligned_cols=152  Identities=19%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCC----CEEEEecccCcCCCCCCcccEEEEc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      +.+|||+|||+|.++..|++ .+++|+|||+++.|++.|+++.........    ++++.+.+++.+.   +.||+|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            57899999999999999996 678999999999999999999544333222    4677778877764   459999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-H---hhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-N---VVDPLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      .+++|+.|+..++..+.++|||||.+++.+.++.....+...+. +   .+-+-+....+.+..+.++..++..+++++.
T Consensus       166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN  245 (282)
T ss_pred             HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence            99999999999999999999999999999876644322221111 1   1111222223346678899999999999976


Q ss_pred             EEee
Q 022248          278 ELGN  281 (300)
Q Consensus       278 ~~~~  281 (300)
                      .+..
T Consensus       246 ~v~G  249 (282)
T KOG1270|consen  246 DVVG  249 (282)
T ss_pred             hhhc
Confidence            6653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.80  E-value=8.9e-19  Score=146.15  Aligned_cols=147  Identities=20%  Similarity=0.246  Sum_probs=117.7

Q ss_pred             CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  205 (300)
                      ++|||||||+|.++..+++. ++.+++|+|+|+.+++.+++++...++. +++.++..|+...+++ ++||+|++..+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            37999999999999998874 3579999999999999999999888775 5899999998776664 5899999999999


Q ss_pred             CcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          206 SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       206 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      |+.+...+++++.++|||||++++.+.........          ..........+..+|.++++++||+.++......+
T Consensus        79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~  148 (224)
T smart00828       79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI----------EHEETTSYLVTREEWAELLARNNLRVVEGVDASLE  148 (224)
T ss_pred             hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc----------cccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence            99999999999999999999999988643211000          00001112456789999999999999888765443

>PRK08317 hypothetical protein; Provisional

Probab=99.80  E-value=6.1e-18  Score=142.41  Aligned_cols=157  Identities=24%  Similarity=0.360  Sum_probs=118.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.++++....   ..++.++.+|+...+++++.||+|++.
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v~~~   94 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFDAVRSD   94 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCceEEEEe
Confidence            46789999999999999999874  4579999999999999998873222   247899999998888888999999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCC---CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK---DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      .+++++.++..+++++.++|||||.+++.+.....   .......+.+....... .....+...++.++|+++||+.+.
T Consensus        95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~  173 (241)
T PRK08317         95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFADPWLGRRLPGLFREAGLTDIE  173 (241)
T ss_pred             chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHcCCCcee
Confidence            99999999999999999999999999998753211   01011112222111111 112233456899999999999888


Q ss_pred             Eeeecc
Q 022248          279 LGNAFL  284 (300)
Q Consensus       279 ~~~~~~  284 (300)
                      ++...+
T Consensus       174 ~~~~~~  179 (241)
T PRK08317        174 VEPYTL  179 (241)
T ss_pred             EEEEEE
Confidence            776544

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.80  E-value=3.5e-18  Score=139.37  Aligned_cols=139  Identities=22%  Similarity=0.257  Sum_probs=108.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++.  ++++.+.|+..++++ +.||+|++..++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~  105 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLTFD-GEYDFILSTVVL  105 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCCcC-CCcCEEEEecch
Confidence            5689999999999999999875 679999999999999999998887763  688999999887764 679999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++++  +...+++++.++|||||++++.......+..        ..   . .....++..++.+.++  ||+++..+.
T Consensus       106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--------~~---~-~~~~~~~~~el~~~~~--~~~~~~~~~  170 (197)
T PRK11207        106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--------CT---V-GFPFAFKEGELRRYYE--GWEMVKYNE  170 (197)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--------CC---C-CCCCccCHHHHHHHhC--CCeEEEeeC
Confidence            8875  4678999999999999997765533222110        00   0 0012346678888886  899888754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.79  E-value=9.9e-19  Score=129.67  Aligned_cols=105  Identities=28%  Similarity=0.364  Sum_probs=89.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~  202 (300)
                      |+.+|||||||+|.++..+++ .++.+++|+|+++.+++.|++++...+.. ++++++++|+ ..... .+.||+|++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCccc-CCCCCEEEECC
Confidence            468999999999999999998 58889999999999999999999666654 6999999999 33443 35699999998


Q ss_pred             -cccCc---ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 -VLCSV---KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 -~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                       .++++   ++...+++++.+.|+|||++++.+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence             45433   455788999999999999999865

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.79  E-value=1.8e-17  Score=138.14  Aligned_cols=157  Identities=31%  Similarity=0.419  Sum_probs=119.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++...  .+++++|+++.+++.++++..   . ..++.++.+|+.+.+++++.||+|++.
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-~~~i~~~~~d~~~~~~~~~~~D~i~~~  113 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-PLNIEFIQADAEALPFEDNSFDAVTIA  113 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-CCCceEEecchhcCCCCCCcEEEEEEe
Confidence            3678999999999999999887544  589999999999999988765   1 247899999999888877899999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH----hhhhhhhhh-------------cCCcccchH
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN----VVDPLQQIV-------------SDGCHLTRQ  264 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~  264 (300)
                      +++++..+...+++++.++|+|||++++.+...............    .........             ...+.+.++
T Consensus       114 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (223)
T TIGR01934       114 FGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE  193 (223)
T ss_pred             eeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence            999999999999999999999999999988654432211111111    111001000             012456789


Q ss_pred             HHHHHHhcCCcEEEEeeecc
Q 022248          265 TGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       265 ~~~~l~~aGf~~v~~~~~~~  284 (300)
                      |.++|+++||+.+.++....
T Consensus       194 ~~~~l~~aGf~~~~~~~~~~  213 (223)
T TIGR01934       194 LAAMLKEAGFEEVRYRSLTF  213 (223)
T ss_pred             HHHHHHHcCCccceeeeeec
Confidence            99999999999988875543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.78  E-value=7.9e-18  Score=141.76  Aligned_cols=143  Identities=24%  Similarity=0.318  Sum_probs=113.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.++++..      +++.++.+|++..++++++||+|++..+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~  107 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA  107 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence            4579999999999999998874 45679999999999999987653      3688999999999888899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++.++..++.++.++|+|||.+++.++.......    +......    ....+.+.+++.+++..+ |..+.+...
T Consensus       108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~l~~~-f~~~~~~~~  177 (240)
T TIGR02072       108 LQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHE----LRQSFGQ----HGLRYLSLDELKALLKNS-FELLTLEEE  177 (240)
T ss_pred             hhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHH----HHHHHHH----hccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence            999999999999999999999999998765433211    1111110    223456677899999888 887666543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.78  E-value=1.8e-17  Score=137.69  Aligned_cols=152  Identities=24%  Similarity=0.207  Sum_probs=110.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...+.. .++.|..+|+..++   ++||+|++..+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~  128 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC---GEFDIVVCMDV  128 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhCC---CCcCEEEEhhH
Confidence            35789999999999999999864 569999999999999999998776543 47999999998876   78999999999


Q ss_pred             ccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      +++++  +...+++++.+++++++++.+..  .........++...+...........++.+++.++++++||+++..+.
T Consensus       129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       129 LIHYPASDMAKALGHLASLTKERVIFTFAP--KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             HHhCCHHHHHHHHHHHHHHhCCCEEEEECC--CchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence            98875  35678999999998776655432  111111111222221111111112345788999999999999988764


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       207 ~  207 (219)
T TIGR02021       207 V  207 (219)
T ss_pred             c
Confidence            3

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.78  E-value=2.7e-17  Score=140.19  Aligned_cols=153  Identities=14%  Similarity=0.209  Sum_probs=110.9

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ...++..+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++.       +++.|+.+|+..+. ++
T Consensus        20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CC
Confidence            344455444 46789999999999999999874 4679999999999999998874       47889999988764 45


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh--hhhhhh------hcCCcccchH
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV--DPLQQI------VSDGCHLTRQ  264 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~  264 (300)
                      ++||+|+++.+++++++...+++++.++|||||.+++..+....... ...+....  ..+...      ......+..+
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  170 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLPPPHA  170 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence            68999999999999999999999999999999999996532221111 11111111  000000      0112345678


Q ss_pred             HHHHHHhcCCcE
Q 022248          265 TGNNISEAGFSS  276 (300)
Q Consensus       265 ~~~~l~~aGf~~  276 (300)
                      +.+++.++|+.+
T Consensus       171 ~~~~l~~~g~~v  182 (258)
T PRK01683        171 YYDALAPAACRV  182 (258)
T ss_pred             HHHHHHhCCCce
Confidence            899999999874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.77  E-value=3.6e-17  Score=142.71  Aligned_cols=153  Identities=12%  Similarity=0.150  Sum_probs=115.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++. +..+++++|. +.+++.+++++...++. ++++++.+|+.+.+++  .+|+|++..
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~~~~--~~D~v~~~~  223 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYP--EADAVLFCR  223 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCCCCC--CCCEEEeEh
Confidence            45689999999999999999874 6789999997 78999999999888875 5899999999876654  369999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc-hHHHHHHHhhhhhhh-hhcCCcccchHHHHHHHhcCCcEEE
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG-TFLKFWQNVVDPLQQ-IVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++|++.+.  ..+++++++.|+|||++++.+....... .....+......... .........+++.++|+++||+.++
T Consensus       224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~  303 (306)
T TIGR02716       224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT  303 (306)
T ss_pred             hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence            99988654  5789999999999999999987543322 111222222111110 0111234468999999999999887


Q ss_pred             Ee
Q 022248          279 LG  280 (300)
Q Consensus       279 ~~  280 (300)
                      +.
T Consensus       304 ~~  305 (306)
T TIGR02716       304 MV  305 (306)
T ss_pred             ec
Confidence            53

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.76  E-value=1.5e-17  Score=139.40  Aligned_cols=156  Identities=20%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ..+++|||||||+|+++..++......|+|+|++.....+.+...+-.+.. ..+.++...++.+|. .+.||+|+|..+
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGV  191 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGV  191 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-cCCcCEEEEeee
Confidence            478999999999999999998877778999999998877755444434432 234444456678886 689999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      |+|..++...|.+++..|+|||.+++-+.....+....-.-...+..+...+  -..+...+..+|+++||+.|++....
T Consensus       192 LYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~--FiPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  192 LYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW--FIPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             hhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE--EeCCHHHHHHHHHHcCCceEEEecCc
Confidence            9999999999999999999999999977654332211000000111111111  12366799999999999998886544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.76  E-value=3.3e-17  Score=133.38  Aligned_cols=139  Identities=17%  Similarity=0.179  Sum_probs=106.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++   ++.+...|+...+++ ++||+|++..++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~I~~~~~~  104 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALN-EDYDFIFSTVVF  104 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhcccc-CCCCEEEEeccc
Confidence            5679999999999999999874 67999999999999999998877765   367777887666654 679999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++  +...+++++.++|||||++++.+........           .. .......+..++.+++.  +|+++.....
T Consensus       105 ~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~-----------~~-~~~~~~~~~~el~~~f~--~~~~~~~~e~  170 (195)
T TIGR00477       105 MFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP-----------CH-MPFSFTFKEDELRQYYA--DWELLKYNEA  170 (195)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC-----------CC-CCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence            9884  4578999999999999998777643322100           00 01123466778888885  5998888744

Part of a tellurite-reducing operon tehA and tehB

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.75  E-value=1.5e-16  Score=127.85  Aligned_cols=127  Identities=21%  Similarity=0.247  Sum_probs=103.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|..+..++. .++.+++++|+++.+++.|+++.+..++.  +++++.+|+.+++. +++||+|++.. 
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            478999999999999998876 56789999999999999999999998874  69999999988876 67999999864 


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                         +.+...+++++.++|||||++++......                          ..++.++.+..|+.+.+.....
T Consensus       121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~--------------------------~~~l~~~~~~~~~~~~~~~~~~  171 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPGGRFLALKGRDP--------------------------EEEIAELPKALGGKVEEVIELT  171 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCCeEEEEEeCCCh--------------------------HHHHHHHHHhcCceEeeeEEEe
Confidence               45678899999999999999999863211                          1255566667788866665444


Q ss_pred             c
Q 022248          284 L  284 (300)
Q Consensus       284 ~  284 (300)
                      +
T Consensus       172 ~  172 (187)
T PRK00107        172 L  172 (187)
T ss_pred             c
Confidence            4

>PRK06202 hypothetical protein; Provisional

Probab=99.74  E-value=9.5e-17  Score=134.56  Aligned_cols=149  Identities=16%  Similarity=0.209  Sum_probs=105.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..|++.     ++.+++|+|+++.|++.|+++....     ++.+...+...++.++++||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEE
Confidence            45679999999999998888741     3469999999999999998875432     4566667777777777899999


Q ss_pred             EEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh--------hhhhcCCcccchHHHHH
Q 022248          199 VGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL--------QQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       199 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  268 (300)
                      ++++++||+++.  ..+++++.++++  |.+++.+.......... .........        ........++.+++.++
T Consensus       134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l  210 (232)
T PRK06202        134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL  210 (232)
T ss_pred             EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence            999999999875  479999999998  66777665554321111 111111100        00111246788999999


Q ss_pred             HHhcCCcEEEEee
Q 022248          269 ISEAGFSSVELGN  281 (300)
Q Consensus       269 l~~aGf~~v~~~~  281 (300)
                      +++ ||+++....
T Consensus       211 l~~-Gf~~~~~~~  222 (232)
T PRK06202        211 APQ-GWRVERQWP  222 (232)
T ss_pred             hhC-CCeEEeccc
Confidence            999 999765543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.74  E-value=3e-16  Score=131.66  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=114.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+.   ++.++..++...+ ..++.||+|++..
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence            46789999999999999888864 67899999999999999988776553   5778888877654 3457899999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH-Hhhhhh---hhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ-NVVDPL---QQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++++.++...+++.+.++|+|||.+++..+...........+. ......   .......+.+.++|.++++++||++++
T Consensus       123 ~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~  202 (233)
T PRK05134        123 MLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD  202 (233)
T ss_pred             HhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence            9999999999999999999999999988754322111111110 000000   001112355778999999999999988


Q ss_pred             Eee
Q 022248          279 LGN  281 (300)
Q Consensus       279 ~~~  281 (300)
                      +..
T Consensus       203 ~~~  205 (233)
T PRK05134        203 ITG  205 (233)
T ss_pred             eee
Confidence            764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.73  E-value=1.1e-16  Score=138.09  Aligned_cols=138  Identities=20%  Similarity=0.233  Sum_probs=107.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..++   ++.+...|+...++ +++||+|++..++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl  194 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASI-QEEYDFILSTVVL  194 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccc-cCCccEEEEcchh
Confidence            4569999999999999999874 67999999999999999999888775   68888888877665 6789999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++++  +...+++++.++|+|||+++++.........            ........+...++.+.+.  +|+++...+
T Consensus       195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~------------~~~p~~~~~~~~el~~~~~--~~~i~~~~e  259 (287)
T PRK12335        195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP------------CPMPFSFTFKEGELKDYYQ--DWEIVKYNE  259 (287)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC------------CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence            9875  5578899999999999998876543322110            0011123466778988885  499988853

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.72  E-value=3.4e-16  Score=125.54  Aligned_cols=131  Identities=18%  Similarity=0.274  Sum_probs=101.1

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..++. .+..+++++|.++.+++.++++++..++.  +++++++|+++++ .+++||+|++.. 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~-~~~~fD~I~s~~-  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQ-HEEQFDVITSRA-  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhcc-ccCCccEEEehh-
Confidence            478999999999999988875 34578999999999999999998888763  7999999998875 357999999865 


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                         +.+....++.+.++|+|||++++..  ....  ... +                  .+..+.+...||+.++.....
T Consensus       118 ---~~~~~~~~~~~~~~LkpgG~lvi~~--~~~~--~~~-~------------------~~~~e~~~~~~~~~~~~~~~~  171 (181)
T TIGR00138       118 ---LASLNVLLELTLNLLKVGGYFLAYK--GKKY--LDE-I------------------EEAKRKCQVLGVEPLEVPPLT  171 (181)
T ss_pred             ---hhCHHHHHHHHHHhcCCCCEEEEEc--CCCc--HHH-H------------------HHHHHhhhhcCceEeeccccC
Confidence               3456677889999999999999864  1111  000 0                  133344445899999988776


Q ss_pred             cC
Q 022248          284 LS  285 (300)
Q Consensus       284 ~~  285 (300)
                      .+
T Consensus       172 ~~  173 (181)
T TIGR00138       172 GP  173 (181)
T ss_pred             CC
Confidence            65

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.72  E-value=5.7e-16  Score=129.21  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=116.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..+++. +..++++|+++.+++.+++++...+..  ++.+...|+.+.+.. .++||+|++..+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            5789999999999999988764 557999999999999999988766542  588888988776544 378999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hh-hhh--hhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VV-DPL--QQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      ++++.++..+++++.++|+|||.+++................. .. ...  .......+.+..++.++++++||+++++
T Consensus       122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~  201 (224)
T TIGR01983       122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV  201 (224)
T ss_pred             HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence            9999999999999999999999999887543221111111110 00 000  0001123456778999999999999988


Q ss_pred             eeec
Q 022248          280 GNAF  283 (300)
Q Consensus       280 ~~~~  283 (300)
                      +...
T Consensus       202 ~~~~  205 (224)
T TIGR01983       202 KGLV  205 (224)
T ss_pred             eeEE
Confidence            7543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.71  E-value=4.7e-16  Score=130.28  Aligned_cols=153  Identities=20%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++. +..++|+|+++.+++.|+++....+.. .++.+..+|+.   ..+++||+|++..+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~~~~~fD~v~~~~~  136 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLE---SLLGRFDTVVCLDV  136 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCch---hccCCcCEEEEcch
Confidence            35689999999999999999865 457999999999999999998777653 47899998843   34578999999999


Q ss_pred             ccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++|+++  ...+++++.+.+++++.+.+..  ..........+...+............+..++.++++++||++++...
T Consensus       137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        137 LIHYPQEDAARMLAHLASLTRGSLIFTFAP--YTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             hhcCCHHHHHHHHHHHHhhcCCeEEEEECC--ccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence            988764  4567888888775444333221  111111111111111111111112345678999999999999988865


Q ss_pred             ec
Q 022248          282 AF  283 (300)
Q Consensus       282 ~~  283 (300)
                      ..
T Consensus       215 ~~  216 (230)
T PRK07580        215 IS  216 (230)
T ss_pred             cc
Confidence            44

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.71  E-value=8.9e-16  Score=132.85  Aligned_cols=149  Identities=17%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.++++.+..+.   ...++.|...|++.+   ++.||+|+|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence            5679999999999999999874 67999999999999999999876521   123678888887654   4789999999


Q ss_pred             ccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh---hhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          202 LVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV---VDPLQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       202 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      .+++|+++.  ..+++.+.+ +.+||.+ +.. .+.  ......+...   +..........+++.++++++|+++||++
T Consensus       220 ~vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~-~p~--~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v  294 (315)
T PLN02585        220 DVLIHYPQDKADGMIAHLAS-LAEKRLI-ISF-APK--TLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV  294 (315)
T ss_pred             CEEEecCHHHHHHHHHHHHh-hcCCEEE-EEe-CCc--chHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence            999888754  345666664 4555554 433 121  1121222211   11101001112447899999999999998


Q ss_pred             EEEeee
Q 022248          277 VELGNA  282 (300)
Q Consensus       277 v~~~~~  282 (300)
                      +..+..
T Consensus       295 ~~~~~~  300 (315)
T PLN02585        295 ARREMT  300 (315)
T ss_pred             EEEEEe
Confidence            765533

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.71  E-value=6.8e-16  Score=123.24  Aligned_cols=139  Identities=22%  Similarity=0.242  Sum_probs=101.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.++||+|||.|+.+..|++ .|..|+++|.|+..++.+++.++..++   .++..+.|+....++ +.||+|++..++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I~st~v~  104 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFIVSTVVF  104 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEEESSG
T ss_pred             CCCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEEEEEEEe
Confidence            578999999999999999997 577999999999999999999888887   489999999888775 689999998888


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++  ....+++.+...++|||++++......++-..         +   ......+.+.|+...+  +||+++..++.
T Consensus       105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~---------~---~~~~f~~~~~EL~~~y--~dW~il~y~E~  170 (192)
T PF03848_consen  105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC---------P---SPFPFLLKPGELREYY--ADWEILKYNED  170 (192)
T ss_dssp             GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-----------S---S--S--B-TTHHHHHT--TTSEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC---------C---CCCCcccCHHHHHHHh--CCCeEEEEEcc
Confidence            8874  45678999999999999999977644332100         0   0011233456777777  47998887543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.70  E-value=4.9e-16  Score=126.60  Aligned_cols=147  Identities=13%  Similarity=0.094  Sum_probs=103.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++..+..++|+|+++.+++.+++.         +++++.+|+.. + ++++++||+|++.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            36779999999999999988766667889999999999988642         46788888865 4 4677899999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hhhh-------hhhhhcCCcccchHHHHHHHhcC
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VVDP-------LQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      .+++|++++..+++++.|++++   +++..+...........+.. ....       .....+..+.+.+++.++++++|
T Consensus        83 ~~l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        83 QTLQATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             hHhHcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence            9999999999999999887654   34432211100000000100 0000       00111224667899999999999


Q ss_pred             CcEEEEeee
Q 022248          274 FSSVELGNA  282 (300)
Q Consensus       274 f~~v~~~~~  282 (300)
                      |++++....
T Consensus       160 f~v~~~~~~  168 (194)
T TIGR02081       160 LRILDRAAF  168 (194)
T ss_pred             CEEEEEEEe
Confidence            999887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.70  E-value=2.7e-16  Score=140.32  Aligned_cols=158  Identities=22%  Similarity=0.242  Sum_probs=113.1

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      .....+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++..  ++   .+++...|...+   
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l---~v~~~~~D~~~l---  225 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL---PVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC---eEEEEECchhhc---
Confidence            33444555544 5678999999999999999987667899999999999999998874  22   477888887665   


Q ss_pred             CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCc-hHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          192 DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDG-TFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      +++||+|++..+++|+.  +...+++++.++|||||++++......... ....++.++..     ......+..++.+.
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yif-----p~g~lps~~~i~~~  300 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIF-----PNGCLPSVRQIAQA  300 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeec-----CCCcCCCHHHHHHH
Confidence            47899999999999985  457899999999999999999875443211 11112211111     11234456677776


Q ss_pred             HHhcCCcEEEEeeecc
Q 022248          269 ISEAGFSSVELGNAFL  284 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~  284 (300)
                      ++ .||++.+++....
T Consensus       301 ~~-~~~~v~d~~~~~~  315 (383)
T PRK11705        301 SE-GLFVMEDWHNFGA  315 (383)
T ss_pred             HH-CCcEEEEEecChh
Confidence            55 6899887765433

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.69  E-value=5.7e-16  Score=122.46  Aligned_cols=158  Identities=16%  Similarity=0.212  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      +-..+++..+. ....+|.|+|||+|..+..|++ .+++.++|+|.|++|++.|+++.       ++++|..+|+.... 
T Consensus        17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~-   88 (257)
T COG4106          17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWK-   88 (257)
T ss_pred             CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcC-
Confidence            34455666665 4568999999999999999987 58899999999999999998874       69999999998875 


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh--hhhhh------hcCCcccc
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD--PLQQI------VSDGCHLT  262 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~  262 (300)
                      ++...|+++++.++++++|...+|.++...|.|||+|.+-.+.......+ ..+.....  ++...      ......+.
T Consensus        89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH-~~mr~~A~~~p~~~~l~~~~~~r~~v~s~  167 (257)
T COG4106          89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSH-RLMRETADEAPFAQELGGRGLTRAPLPSP  167 (257)
T ss_pred             CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhH-HHHHHHHhcCchhhhhCccccccCCCCCH
Confidence            45789999999999999999999999999999999999976544333222 22222111  11111      12345567


Q ss_pred             hHHHHHHHhcCCcEEEEe
Q 022248          263 RQTGNNISEAGFSSVELG  280 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~  280 (300)
                      ..+.++|...+-+ |.+.
T Consensus       168 a~Yy~lLa~~~~r-vDiW  184 (257)
T COG4106         168 AAYYELLAPLACR-VDIW  184 (257)
T ss_pred             HHHHHHhCcccce-eeee
Confidence            7888888887665 4443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.69  E-value=4.7e-16  Score=122.50  Aligned_cols=133  Identities=22%  Similarity=0.216  Sum_probs=98.7

Q ss_pred             EEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          152 LGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       152 ~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      +|+|+|+.|++.|+++.+.... ...+++|+++|++++|+++++||+|++.+++++++|+..++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            4899999999999877653221 014799999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCchHHHHHHHhh-----hhhh------hhh------cCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          231 EHVAAKDGTFLKFWQNVV-----DPLQ------QIV------SDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~-----~~~~------~~~------~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ++..... ..........     .+..      ..+      ...+.+.+++.++|+++||+.+......+.
T Consensus        81 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g  151 (160)
T PLN02232         81 DFNKSNQ-SVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG  151 (160)
T ss_pred             ECCCCCh-HHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence            9875433 2221111100     0000      000      023567889999999999999877655443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=1.4e-17  Score=120.61  Aligned_cols=96  Identities=33%  Similarity=0.452  Sum_probs=65.0

Q ss_pred             EEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcccccC
Q 022248          130 LEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS  206 (300)
Q Consensus       130 LDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~  206 (300)
                      ||||||+|.++..+++. +..+++|+|+|+.|++.+++++......  +......+..+..  ...++||+|++..+++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            79999999999999874 6789999999999999999988876532  3344443333321  12269999999999999


Q ss_pred             cccHHHHHHHHHHcccCCcEE
Q 022248          207 VKDVDMTLQEVRRVLKPGGIY  227 (300)
Q Consensus       207 ~~~~~~~l~~~~~~LkpgG~l  227 (300)
                      ++++..++++++++|||||+|
T Consensus        79 l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   79 LEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.68  E-value=6.4e-17  Score=117.62  Aligned_cols=94  Identities=32%  Similarity=0.537  Sum_probs=79.1

Q ss_pred             EEEECCCCChhHHHhHhCC----CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc-cc
Q 022248          129 VLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT-LV  203 (300)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~  203 (300)
                      |||+|||+|..+..+.+..    ..+++|+|+|+.+++.+++.....+.   +++|+++|+.++++.+++||+|++. .+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~   77 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGLS   77 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence            7999999999999998742    37999999999999999999887664   7899999999998888899999995 44


Q ss_pred             ccCccc--HHHHHHHHHHcccCCc
Q 022248          204 LCSVKD--VDMTLQEVRRVLKPGG  225 (300)
Q Consensus       204 l~~~~~--~~~~l~~~~~~LkpgG  225 (300)
                      ++|+.+  ...+++++.++|+|||
T Consensus        78 ~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   78 LHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCC
Confidence            888864  4688999999999998

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.67  E-value=4.1e-15  Score=119.59  Aligned_cols=130  Identities=22%  Similarity=0.199  Sum_probs=103.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..++.... +++++|+++.+++.+++++...+.   +++++.+|+.+..  .++||+|+++...
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~   92 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILFNPPY   92 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEECCCC
Confidence            567899999999999999987544 999999999999999999887664   5888989986653  3589999998766


Q ss_pred             cCccc---------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248          205 CSVKD---------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR  263 (300)
Q Consensus       205 ~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (300)
                      ++.++                     ...+++++.++|||||.++++......                         ..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~-------------------------~~  147 (179)
T TIGR00537        93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG-------------------------EP  147 (179)
T ss_pred             CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC-------------------------hH
Confidence            54432                     346799999999999999998743221                         23


Q ss_pred             HHHHHHHhcCCcEEEEeeeccC
Q 022248          264 QTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ++.+.|++.||+...+.+....
T Consensus       148 ~~~~~l~~~gf~~~~~~~~~~~  169 (179)
T TIGR00537       148 DTFDKLDERGFRYEIVAERGLF  169 (179)
T ss_pred             HHHHHHHhCCCeEEEEEEeecC
Confidence            7788899999998877765443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.67  E-value=9.2e-15  Score=118.43  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++.  +++++.+|+.. ++ .+.||+|++..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~-~~-~~~~D~v~~~~  105 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPI-EL-PGKADAIFIGG  105 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchh-hc-CcCCCEEEECC
Confidence            46789999999999999998873 4579999999999999999998877763  78999888742 33 36799999976


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ...   ....++..+.++|+|||++++......                         ...++.+++++.||+.+++...
T Consensus       106 ~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~-------------------------~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287        106 SGG---NLTAIIDWSLAHLHPGGRLVLTFILLE-------------------------NLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             Ccc---CHHHHHHHHHHhcCCCeEEEEEEecHh-------------------------hHHHHHHHHHHCCCCcceEEEE
Confidence            544   346678999999999999988552111                         0136778899999987776543


Q ss_pred             cc
Q 022248          283 FL  284 (300)
Q Consensus       283 ~~  284 (300)
                      ..
T Consensus       158 ~~  159 (187)
T PRK08287        158 QV  159 (187)
T ss_pred             EE
Confidence            33

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.66  E-value=4.1e-15  Score=121.61  Aligned_cols=108  Identities=22%  Similarity=0.245  Sum_probs=87.4

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +.+.+..+ .++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++.       +++.+..+|+.. +++++
T Consensus        34 ~~~~l~~~-~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~  104 (204)
T TIGR03587        34 FARALNRL-PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDN  104 (204)
T ss_pred             HHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCC
Confidence            33344443 36678999999999999999874 5689999999999999998763       356788889887 88889


Q ss_pred             cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +||+|++..+++|++  +...+++++.+++  ++++++.+..
T Consensus       105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY  144 (204)
T ss_pred             CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence            999999999999985  3467889999987  5688887753

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.66  E-value=8e-16  Score=125.92  Aligned_cols=111  Identities=27%  Similarity=0.280  Sum_probs=91.1

Q ss_pred             HHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCC--CCCCc
Q 022248          119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIP--VSDAS  194 (300)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~  194 (300)
                      ...+..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++  +++.++++|+ +.++  +++++
T Consensus        34 ~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~  111 (202)
T PRK00121         34 AELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGS  111 (202)
T ss_pred             HHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHHHHHHHHcCccc
Confidence            3333446789999999999999999864 567899999999999999999888776  4799999999 7666  67789


Q ss_pred             ccEEEEcccccCcc--------cHHHHHHHHHHcccCCcEEEEEe
Q 022248          195 VDAVVGTLVLCSVK--------DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       195 ~D~v~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ||+|++.+...+..        ....+++++.++|||||++++..
T Consensus       112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            99999876543322        13678999999999999999976

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.66  E-value=2.3e-15  Score=118.56  Aligned_cols=148  Identities=19%  Similarity=0.150  Sum_probs=110.2

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-CCCCCcccEEEE
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVG  200 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~  200 (300)
                      ..++.+|||+|||.|.++..|.+..+.+.+|+|++++.+..+.++         -+.++++|+++ + .|++++||.||+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r---------Gv~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR---------GVSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc---------CCCEEECCHHHhHhhCCCCCccEEeh
Confidence            357899999999999999999887889999999999998887765         46789999976 3 489999999999


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh-------h-hhhc---CCcccchHHHHHH
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-------Q-QIVS---DGCHLTRQTGNNI  269 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~---~~~~~~~~~~~~l  269 (300)
                      +.+++++.+++.+|+|+.|+   |...+++-++.   +.+...++-.+...       . .++.   -...+..+++++.
T Consensus        82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF---g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc  155 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF---GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC  155 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh---HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence            99999999999999999776   44666655432   22222232221110       0 0111   1245678999999


Q ss_pred             HhcCCcEEEEeeeccC
Q 022248          270 SEAGFSSVELGNAFLS  285 (300)
Q Consensus       270 ~~aGf~~v~~~~~~~~  285 (300)
                      ++.|+++++-......
T Consensus       156 ~~~~i~I~~~~~~~~~  171 (193)
T PF07021_consen  156 RELGIRIEERVFLDGG  171 (193)
T ss_pred             HHCCCEEEEEEEEcCC
Confidence            9999998877654443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.66  E-value=7.5e-16  Score=142.46  Aligned_cols=145  Identities=23%  Similarity=0.233  Sum_probs=109.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~  202 (300)
                      ++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++...   . .+++.++++|+.  .+++++++||+|++.+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~---~-~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~  111 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING---H-YKNVKFMCADVTSPDLNISDGSVDLIFSNW  111 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc---c-CCceEEEEecccccccCCCCCCEEEEehhh
Confidence            5679999999999999999875 5599999999999988765321   1 247899999986  4677888999999999


Q ss_pred             cccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          203 VLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       203 ~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      +++++++  ...+++++.++|||||++++.+......+....          ......+.....|.+++.++||..+...
T Consensus       112 ~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~f~~~~~~~~~~~  181 (475)
T PLN02336        112 LLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR----------KNNPTHYREPRFYTKVFKECHTRDEDGN  181 (475)
T ss_pred             hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc----------cCCCCeecChHHHHHHHHHheeccCCCC
Confidence            9999976  468999999999999999998865432211110          0001123346699999999999976655


Q ss_pred             eecc
Q 022248          281 NAFL  284 (300)
Q Consensus       281 ~~~~  284 (300)
                      ...+
T Consensus       182 ~~~~  185 (475)
T PLN02336        182 SFEL  185 (475)
T ss_pred             EEEE
Confidence            4444

>PRK06922 hypothetical protein; Provisional

Probab=99.65  E-value=3.1e-15  Score=138.02  Aligned_cols=106  Identities=21%  Similarity=0.393  Sum_probs=91.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~  201 (300)
                      ++.+|||+|||+|.++..+++ .++.+++|+|+|+.|++.|+++....+   .++.++++|+.+++  +++++||+|+++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            578999999999999888876 467899999999999999998875544   36888999998887  788999999999


Q ss_pred             ccccCc-------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSV-------------KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .++|++             .+...+++++.++|||||.+++.+..
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            888865             24578899999999999999998753

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.64  E-value=7.7e-15  Score=112.92  Aligned_cols=129  Identities=22%  Similarity=0.316  Sum_probs=103.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ...+|||+|||+|.++..|++. ....++|+|+|+.+++.|+..++..+++ ..|+|.+.|+.+..+..+.||+|+--..
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT  145 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGT  145 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcccccceeEEeecCc
Confidence            3459999999999999999974 3345999999999999999999988885 4599999999888888899999997655


Q ss_pred             ccCc---c-----cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          204 LCSV---K-----DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       204 l~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      +..+   +     .+..++..+.+.|+|||+++|...+                          ++.+|+.+.++..||+
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN--------------------------~T~dELv~~f~~~~f~  199 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN--------------------------FTKDELVEEFENFNFE  199 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC--------------------------ccHHHHHHHHhcCCeE
Confidence            5544   1     1245688899999999999997643                          3345888889899988


Q ss_pred             EEEEe
Q 022248          276 SVELG  280 (300)
Q Consensus       276 ~v~~~  280 (300)
                      .....
T Consensus       200 ~~~tv  204 (227)
T KOG1271|consen  200 YLSTV  204 (227)
T ss_pred             EEEee
Confidence            76554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.64  E-value=7e-16  Score=122.93  Aligned_cols=171  Identities=19%  Similarity=0.283  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhhcC-CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248          112 AGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (300)
Q Consensus       112 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~  189 (300)
                      ...+.+++..... +-.++||+|||||..+..|.. ....++|+|+|.+|+++|.++--..       ...++++... +
T Consensus       111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~-~a~~ltGvDiS~nMl~kA~eKg~YD-------~L~~Aea~~Fl~  182 (287)
T COG4976         111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD-MADRLTGVDISENMLAKAHEKGLYD-------TLYVAEAVLFLE  182 (287)
T ss_pred             HHHHHHHHHhccCCccceeeecccCcCcccHhHHH-HHhhccCCchhHHHHHHHHhccchH-------HHHHHHHHHHhh
Confidence            3455566665552 368999999999999988864 3458999999999999998762111       1233333221 1


Q ss_pred             -CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          190 -VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       190 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                       ..++.||+|+...++.++-+.+.++--....|+|||.|.|+.-....++.+  .    +.+.+    ..-|+...++.+
T Consensus       183 ~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--~----l~ps~----RyAH~~~YVr~~  252 (287)
T COG4976         183 DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--V----LGPSQ----RYAHSESYVRAL  252 (287)
T ss_pred             hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCe--e----cchhh----hhccchHHHHHH
Confidence             356889999999999999999999999999999999999987555443221  0    11111    124566789999


Q ss_pred             HHhcCCcEEEEeeeccCC-cccccceeeEEecC
Q 022248          269 ISEAGFSSVELGNAFLSN-ASLISPHVYGIAHK  300 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~~~-~~~~~~~~~~~~~k  300 (300)
                      ++..||++|+++...+.. .--..|-.+.+++|
T Consensus       253 l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark  285 (287)
T COG4976         253 LAASGLEVIAIEDTTIRRDAGEPVPGILVIARK  285 (287)
T ss_pred             HHhcCceEEEeecccchhhcCCCCCCceEEEec
Confidence            999999999999876653 33345556666654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.63  E-value=6.1e-15  Score=121.14  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=108.9

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC----------CCCCCEEEEe
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQ  182 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~----------~~~~~~~~~~  182 (300)
                      .+..++..+. .++.+|||+|||.|..+..|++ .+.+|+|+|+|+.+++.+.+......          ....++++++
T Consensus        22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  100 (213)
T TIGR03840        22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC  100 (213)
T ss_pred             HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence            3444444432 3667999999999999999996 57899999999999998644221000          0123689999


Q ss_pred             cccCcCCCC-CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCc
Q 022248          183 AVGEAIPVS-DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGC  259 (300)
Q Consensus       183 ~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (300)
                      +|+.+++.. .+.||+|+...++++++.  ....++.+.++|||||++++..........            ..  ....
T Consensus       101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------~g--pp~~  166 (213)
T TIGR03840       101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------AG--PPFS  166 (213)
T ss_pred             ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------CC--cCCC
Confidence            999887642 467999999888888853  356899999999999998887654322110            00  0124


Q ss_pred             ccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          260 HLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       260 ~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      .+.+++.++|. .+|+++.++...+.
T Consensus       167 ~~~~eL~~~f~-~~~~i~~~~~~~~~  191 (213)
T TIGR03840       167 VSPAEVEALYG-GHYEIELLESRDVL  191 (213)
T ss_pred             CCHHHHHHHhc-CCceEEEEeecccc
Confidence            56678888775 46887777765544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.62  E-value=4e-15  Score=117.38  Aligned_cols=102  Identities=22%  Similarity=0.301  Sum_probs=81.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      .-.++||+|||.|.++..|+... ..++++|+++.+++.|++++...    ++|+|++.++... .+++.||+|+++.++
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV~SEVl  116 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIVLSEVL  116 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred             ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEEEehHh
Confidence            34789999999999999999765 48999999999999999998643    5899999998665 467999999999999


Q ss_pred             cCccc---HHHHHHHHHHcccCCcEEEEEec
Q 022248          205 CSVKD---VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       205 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +++.+   ...++..+...|+|||.|++..+
T Consensus       117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99965   45689999999999999999774

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.62  E-value=1.8e-15  Score=121.79  Aligned_cols=151  Identities=18%  Similarity=0.236  Sum_probs=107.9

Q ss_pred             CeEEEECCCCChhHHHhHh-C--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC----cCCCCCCcccEEE
Q 022248          127 KKVLEIGIGTGPNLKYYAA-D--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE----AIPVSDASVDAVV  199 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~D~v~  199 (300)
                      .+|||||||.|.....+++ .  ....++++|.|+.+++..++......   .++.-.+.|+.    ..+...+++|+|+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceEE
Confidence            4899999999999999987 2  34789999999999999988754432   34444444443    2356779999999


Q ss_pred             EcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcC----CcccchHHHHHHHhcC
Q 022248          200 GTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSD----GCHLTRQTGNNISEAG  273 (300)
Q Consensus       200 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~aG  273 (300)
                      +.++|..++  ....++++++++|||||.+++-+....+-......-.+.+.....+-++    .+++.+++.+++.++|
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag  229 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG  229 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence            999999874  4578899999999999999999876643211111001111111111112    3568899999999999


Q ss_pred             CcEEEEe
Q 022248          274 FSSVELG  280 (300)
Q Consensus       274 f~~v~~~  280 (300)
                      |..++..
T Consensus       230 f~~~~~~  236 (264)
T KOG2361|consen  230 FEEVQLE  236 (264)
T ss_pred             cchhccc
Confidence            9987765

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.62  E-value=1.1e-14  Score=119.41  Aligned_cols=101  Identities=22%  Similarity=0.274  Sum_probs=84.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.|++++...++. .+++++.+|+.+.....++||+|++.
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~~~~~fD~Ii~~  149 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLEKHAPFDAIIVT  149 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCccCCCccEEEEc
Confidence            46789999999999999888763  2469999999999999999999887764 36899999987754456799999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .++.+++      +++.++|+|||+|++..
T Consensus       150 ~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        150 AAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCcchhh------HHHHHhcCcCcEEEEEE
Confidence            8887664      57889999999998854

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.61  E-value=2.5e-14  Score=107.78  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=84.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++.  +++++.+|+.. ++...+.||.|++.
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccChhhcCCCCEEEEC
Confidence            35679999999999999999874 4579999999999999999998877653  78888888764 33334689999997


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ....   ....+++++.+.|||||.+++..
T Consensus        96 ~~~~---~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGG---LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             Ccch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence            6543   34578999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.61  E-value=4.9e-14  Score=119.57  Aligned_cols=139  Identities=24%  Similarity=0.332  Sum_probs=104.7

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      ..+++.+...+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...++.  ++.++.+|+.. ++++++
T Consensus        78 ~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~-~~~~~~  154 (251)
T TIGR03534        78 EAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFE-PLPGGK  154 (251)
T ss_pred             HHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhc-cCcCCc
Confidence            3344444445579999999999999999874 5679999999999999999999888764  79999999866 455789


Q ss_pred             ccEEEEcccccC------c--------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248          195 VDAVVGTLVLCS------V--------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV  248 (300)
Q Consensus       195 ~D~v~~~~~l~~------~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  248 (300)
                      ||+|+++--...      +                    .....+++++.++|+|||.+++....               
T Consensus       155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------------  219 (251)
T TIGR03534       155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------------  219 (251)
T ss_pred             eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------
Confidence            999998532111      1                    11236789999999999999885410               


Q ss_pred             hhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          249 DPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                                 ...+++.++|+++||+.+++....
T Consensus       220 -----------~~~~~~~~~l~~~gf~~v~~~~d~  243 (251)
T TIGR03534       220 -----------DQGEAVRALFEAAGFADVETRKDL  243 (251)
T ss_pred             -----------cHHHHHHHHHHhCCCCceEEEeCC
Confidence                       012377888999999988876543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.61  E-value=2.5e-14  Score=123.45  Aligned_cols=111  Identities=18%  Similarity=0.246  Sum_probs=87.1

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      .++++.+..++.+|||+|||+|.++..+++....+++++|+++.+++.|++++...++. .++.+...+..  +..+++|
T Consensus       150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~--~~~~~~f  226 (288)
T TIGR00406       150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLE--QPIEGKA  226 (288)
T ss_pred             HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecccc--cccCCCc
Confidence            34444445577999999999999998887755568999999999999999999888764 45666666532  2345789


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+++....   ....++.++.++|||||+++++..
T Consensus       227 DlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       227 DVIVANILAE---VIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             eEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999976432   345788999999999999999874

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.61  E-value=5.5e-15  Score=125.67  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=84.5

Q ss_pred             CCCeEEEECCCCCh----hHHHhHhC------CCceEEEEcCCHHHHHHHHHHHHH----cCCC----------------
Q 022248          125 KAKKVLEIGIGTGP----NLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA----AGLP----------------  174 (300)
Q Consensus       125 ~~~~vLDiGcG~G~----~~~~l~~~------~~~~~~giD~s~~~~~~a~~~~~~----~~~~----------------  174 (300)
                      ++.+|||+|||+|.    ++..+++.      .+.+++|+|+|+.|++.|++.+-.    .+++                
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    34444432      246899999999999999985310    0110                


Q ss_pred             -----CCCEEEEecccCcCCCCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEe
Q 022248          175 -----LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       175 -----~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                           ..++.|.+.|+.+.+++.+.||+|+|.++++|+++  ...++++++++|+|||+|++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                 13689999999988877889999999999999964  4579999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.61  E-value=2.8e-14  Score=121.19  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=88.4

Q ss_pred             CCCCeEEEECCCCChhHHHh-Hh--CCCceEEEEcCCHHHHHHHHHHHHH-cCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYY-AA--DTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l-~~--~~~~~~~giD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+|+|||||.|.++..+ ++  .++.+++|+|+++.+++.|++.+.. .++. ++++|..+|+.+..-..+.||+|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhcccccCCcCEEE
Confidence            36789999999988554433 32  4677999999999999999999965 6665 589999999987643357899999


Q ss_pred             EcccccCc--ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +. +++++  +++.++++++++.|+|||.+++-.
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99 88888  688999999999999999999965

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.61  E-value=3.4e-14  Score=120.23  Aligned_cols=123  Identities=24%  Similarity=0.264  Sum_probs=93.6

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++++..++. .++.+..++        .+||+|+++.
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~--------~~fD~Vvani  187 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGD--------LKADVIVANI  187 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCC--------CCcCEEEEcC
Confidence            4578899999999999998877654446999999999999999999887763 244443332        2799999864


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ..   .....++.++.++|||||++++.+....                         ..+++.+.+++.||+++.....
T Consensus       188 ~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-------------------------~~~~v~~~l~~~Gf~~~~~~~~  239 (250)
T PRK00517        188 LA---NPLLELAPDLARLLKPGGRLILSGILEE-------------------------QADEVLEAYEEAGFTLDEVLER  239 (250)
T ss_pred             cH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-------------------------hHHHHHHHHHHCCCEEEEEEEe
Confidence            32   2345678999999999999999864221                         1237788899999998877654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.60  E-value=7.8e-15  Score=119.38  Aligned_cols=106  Identities=29%  Similarity=0.304  Sum_probs=88.2

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~  200 (300)
                      ...+|||||||+|.++..+++ .+...++|+|+++.+++.|++++...++.  ++.++.+|+..++   ++++.+|.|++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            567999999999999999987 46789999999999999999999888774  8999999997653   45678999998


Q ss_pred             cccccCcccH--------HHHHHHHHHcccCCcEEEEEec
Q 022248          201 TLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       201 ~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .+...+....        ..+++++.++|||||.|++...
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            7654433221        4689999999999999999773

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK04266 fibrillarin; Provisional

Probab=99.60  E-value=4.6e-14  Score=116.85  Aligned_cols=135  Identities=20%  Similarity=0.233  Sum_probs=93.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++..    .++.++.+|+...    ++. +.||+|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence            577899999999999999998743 468999999999999887776543    4788999998642    223 569999


Q ss_pred             EEcccccCccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          199 VGTLVLCSVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       199 ~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++....   ++ ...+++++.++|||||.+++.-.....+...        .. .      .. .++..+.++++||+.+
T Consensus       146 ~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~--------~~-~------~~-~~~~~~~l~~aGF~~i  206 (226)
T PRK04266        146 YQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK--------DP-K------EI-FKEEIRKLEEGGFEIL  206 (226)
T ss_pred             EECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC--------CH-H------HH-HHHHHHHHHHcCCeEE
Confidence            964321   11 2346899999999999999942211000000        00 0      00 1245599999999998


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      +....
T Consensus       207 ~~~~l  211 (226)
T PRK04266        207 EVVDL  211 (226)
T ss_pred             EEEcC
Confidence            77754

>PRK14968 putative methyltransferase; Provisional

Probab=99.60  E-value=7.8e-14  Score=113.03  Aligned_cols=135  Identities=21%  Similarity=0.247  Sum_probs=102.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++...++....+.++.+|+.+. +.++.||+|+++..
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence            36779999999999999999876 78999999999999999999988776422288888887653 44558999998654


Q ss_pred             ccC---------------------cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccc
Q 022248          204 LCS---------------------VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLT  262 (300)
Q Consensus       204 l~~---------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (300)
                      ...                     ......+++++.++|||||.+++.....                         ...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------------------------~~~  154 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------------------------TGE  154 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-------------------------CCH
Confidence            322                     1113567999999999999998865211                         112


Q ss_pred             hHHHHHHHhcCCcEEEEeeeccC
Q 022248          263 RQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      +++.+++.++||+++.+....+.
T Consensus       155 ~~l~~~~~~~g~~~~~~~~~~~~  177 (188)
T PRK14968        155 DEVLEYLEKLGFEAEVVAEEKFP  177 (188)
T ss_pred             HHHHHHHHHCCCeeeeeeecccC
Confidence            36788999999998777654444

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.60  E-value=1.1e-13  Score=113.13  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..++..  ...+++++|+++.+++.++++++..++. +++.++.+|+.+. +...+.||+|++
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHhhcCCCCCEEEE
Confidence            57789999999999999988763  4568999999999999999999888753 5889999998663 333468999998


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ..   ...+...+++++.+.|||||++++..
T Consensus       118 ~~---~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        118 GG---GSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             CC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            54   23466788999999999999998744

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.60  E-value=3.5e-14  Score=117.11  Aligned_cols=153  Identities=16%  Similarity=0.094  Sum_probs=107.5

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-------------CCCCE
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-------------PLTNF  178 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-------------~~~~~  178 (300)
                      ..+.+.+..+. .++.+|||+|||.|..+..|++ .+.+|+|||+|+.+++.+.+.   .++             ...++
T Consensus        24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v   99 (218)
T PRK13255         24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEI   99 (218)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCce
Confidence            34444444332 3568999999999999999996 577999999999999987432   221             12478


Q ss_pred             EEEecccCcCCCC-CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhh
Q 022248          179 KFLQAVGEAIPVS-DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIV  255 (300)
Q Consensus       179 ~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (300)
                      ++.++|+.+++.. .+.||+|+...++++++  ....+++.+.++|+|||+++++.....+...            ..  
T Consensus       100 ~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~------------~g--  165 (218)
T PRK13255        100 TIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL------------AG--  165 (218)
T ss_pred             EEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC------------CC--
Confidence            9999999887533 25899999988888885  3467899999999999986665543322110            00  


Q ss_pred             cCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          256 SDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       256 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      .....+.+++.+++. -+|+++.++....
T Consensus       166 Pp~~~~~~el~~~~~-~~~~i~~~~~~~~  193 (218)
T PRK13255        166 PPFSVSDEEVEALYA-GCFEIELLERQDV  193 (218)
T ss_pred             CCCCCCHHHHHHHhc-CCceEEEeeeccc
Confidence            012456778988884 3378777765443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.59  E-value=3.5e-14  Score=117.08  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=84.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|+++..+++.  ...+++++|+++.+++.++++++..++  .++.++.+|+.....+.+.||+|++.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCCcCEEEEC
Confidence            47789999999999999888764  346999999999999999999988876  48999999987765566899999998


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .....++      ..+.+.|||||++++..
T Consensus       153 ~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        153 AAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcccch------HHHHHhhCCCcEEEEEE
Confidence            7765543      56778999999998854

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.57  E-value=6.7e-14  Score=115.84  Aligned_cols=100  Identities=24%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++..  ..+++++|+++.+++.|+++++..++  ++++++.+|+.......+.||+|++.
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCcccCCcccCCCCEEEEc
Confidence            567899999999999999888743  35799999999999999999998886  48999999987654445789999988


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ....++      ...+.+.|+|||++++..
T Consensus       154 ~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       154 AAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCcccc------cHHHHHhcCcCcEEEEEE
Confidence            766554      356888999999999854

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.57  E-value=5.6e-14  Score=123.64  Aligned_cols=131  Identities=21%  Similarity=0.217  Sum_probs=104.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..++. .+..++|+|+++.|++.++++++..++.  ++.+..+|+.++++.++.||+|+++--
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEEECCC
Confidence            4678999999999999887664 5779999999999999999999988875  588999999999988889999999521


Q ss_pred             c------c--Cccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          204 L------C--SVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       204 l------~--~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      .      .  ...+ ...+++++.++|||||++++..+..                            .++.+.++++||
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~----------------------------~~~~~~~~~~g~  309 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR----------------------------IDLESLAEDAFR  309 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC----------------------------CCHHHHHhhcCc
Confidence            1      1  1112 4678999999999999999876322                            156677889999


Q ss_pred             cEEEEeeeccCC
Q 022248          275 SSVELGNAFLSN  286 (300)
Q Consensus       275 ~~v~~~~~~~~~  286 (300)
                       ++......++.
T Consensus       310 -i~~~~~~~~h~  320 (329)
T TIGR01177       310 -VVKRFEVRVHR  320 (329)
T ss_pred             -chheeeeeeec
Confidence             87777666654

This family is found exclusively in the Archaea.

>PRK14967 putative methyltransferase; Provisional

Probab=99.57  E-value=2.5e-13  Score=113.11  Aligned_cols=106  Identities=25%  Similarity=0.289  Sum_probs=82.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..++.....+++++|+++.+++.+++++...++   ++.++.+|+... ++++.||+|+++--
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~npP  110 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-VEFRPFDVVVSNPP  110 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-ccCCCeeEEEECCC
Confidence            45689999999999999988875445999999999999999999887764   578888888653 45678999999632


Q ss_pred             ccCc---------------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          204 LCSV---------------------KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ....                     .....+++++.++|||||+++++...
T Consensus       111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            1111                     01355788999999999999987543

>TIGR03438 probable methyltransferase

Probab=99.56  E-value=3.8e-13  Score=116.78  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPV  190 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~  190 (300)
                      ....+...+ +++.+|||+|||+|..+..|++..  +.+|+++|+|+.|++.+++++.... +..++.++++|+.+ +++
T Consensus        53 ~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        53 HADEIAAAT-GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLAL  130 (301)
T ss_pred             HHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhh
Confidence            333444444 356799999999999999998753  5799999999999999999876543 11357788999876 343


Q ss_pred             CCC----cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248          191 SDA----SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       191 ~~~----~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ...    ...++++...+++++  +...++++++++|+|||.+++..
T Consensus       131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            322    233444556677765  34578999999999999999844

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=5.6e-14  Score=118.91  Aligned_cols=138  Identities=22%  Similarity=0.332  Sum_probs=103.1

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +-.++++.+..++.+|||+|||+|.++.+.++....+++|+|+++.+++.|+.+++.+++.. .+.....+....+ ..+
T Consensus       151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~~-~~~  228 (300)
T COG2264         151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEVP-ENG  228 (300)
T ss_pred             HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhhc-ccC
Confidence            34455556666899999999999999999987666679999999999999999999988752 2222222222222 236


Q ss_pred             cccEEEEcccccCccc-HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          194 SVDAVVGTLVLCSVKD-VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      .||+|+++=    +.+ ...+...+.+.|||||+++++......                         .+.+.+.+.++
T Consensus       229 ~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q-------------------------~~~V~~a~~~~  279 (300)
T COG2264         229 PFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILEDQ-------------------------AESVAEAYEQA  279 (300)
T ss_pred             cccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHhH-------------------------HHHHHHHHHhC
Confidence            999999864    223 246789999999999999998832210                         13778889999


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||+++++...
T Consensus       280 gf~v~~~~~~  289 (300)
T COG2264         280 GFEVVEVLER  289 (300)
T ss_pred             CCeEeEEEec
Confidence            9999888755

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.55  E-value=3.7e-13  Score=118.46  Aligned_cols=150  Identities=19%  Similarity=0.258  Sum_probs=107.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~  201 (300)
                      .+..+||||||+|.++..+++ .+...++|+|+++.+++.+.+++...++.  ++.++.+|+..+  .++++++|.|++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~ln  199 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEKIFVH  199 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence            456899999999999999987 46789999999999999999999888874  899999999764  5778999999987


Q ss_pred             ccccCcccH------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhh----hh-cCCcccchHHHHHHH
Q 022248          202 LVLCSVKDV------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ----IV-SDGCHLTRQTGNNIS  270 (300)
Q Consensus       202 ~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~  270 (300)
                      +...+....      ..++.++.|+|+|||.+.+.+...    ....+....+.....    .. ........++++...
T Consensus       200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~  275 (390)
T PRK14121        200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWK  275 (390)
T ss_pred             CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHH
Confidence            654433221      578999999999999999976322    222332222211100    00 011122347777788


Q ss_pred             hcCCcEEEEe
Q 022248          271 EAGFSSVELG  280 (300)
Q Consensus       271 ~aGf~~v~~~  280 (300)
                      +.|-.+-.+.
T Consensus       276 ~~G~~Iy~l~  285 (390)
T PRK14121        276 KQNKDIYDLR  285 (390)
T ss_pred             HCCCCEEEEE
Confidence            8888765553

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.55  E-value=1.4e-13  Score=121.75  Aligned_cols=106  Identities=16%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ..+|||+|||+|.++..+++ .+..+++++|+|+.+++.++++++..+.. ..+++++..|.... +++++||+|+|+--
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence            46999999999999999987 46789999999999999999998877542 23788888887542 24468999999755


Q ss_pred             ccCc---c--cHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSV---K--DVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~---~--~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|..   .  ....+++.+.++|+|||.|+++..
T Consensus       308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            5432   2  235789999999999999999863

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.54  E-value=1.2e-13  Score=113.53  Aligned_cols=98  Identities=21%  Similarity=0.302  Sum_probs=77.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  193 (300)
                      .++.+|||||||+|.++..+++.  ....|+|||+++ +          ...  +++.++++|+...+        +.++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            56789999999999999998874  346899999988 1          111  46899999998753        5678


Q ss_pred             cccEEEEcccccCcccH-----------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDV-----------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .||+|++..+.+...++           ..+++++.++|||||.|++..+..
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            99999998776654321           457899999999999999987544

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.54  E-value=1.2e-13  Score=118.09  Aligned_cols=136  Identities=19%  Similarity=0.261  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      +...++++.+..++.+|||+|||+|.++...++....+++|+|+++.+++.|+++++.+++. .++.+.  ...+  ...
T Consensus       149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~~--~~~  223 (295)
T PF06325_consen  149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSED--LVE  223 (295)
T ss_dssp             HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTSC--TCC
T ss_pred             HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eecc--ccc
Confidence            34455666666788999999999999999988765568999999999999999999999986 356543  2222  234


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      +.||+|+++-...   -...++..+.++|+|||+++++......                         .+++.+.+++ 
T Consensus       224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~~-------------------------~~~v~~a~~~-  274 (295)
T PF06325_consen  224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILEEQ-------------------------EDEVIEAYKQ-  274 (295)
T ss_dssp             S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGGG-------------------------HHHHHHHHHT-
T ss_pred             ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHHH-------------------------HHHHHHHHHC-
Confidence            8999999864332   2345678899999999999998854321                         1367788876 


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||++++....
T Consensus       275 g~~~~~~~~~  284 (295)
T PF06325_consen  275 GFELVEEREE  284 (295)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            9998777654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=2.2e-13  Score=108.47  Aligned_cols=105  Identities=29%  Similarity=0.368  Sum_probs=85.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      +..+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++.  +++++..|..+. .+++.||+|+++--
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~-~~~~~fD~Iv~NPP  107 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEA-LPDGKFDLIVSNPP  107 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--cccccccccccc-ccccceeEEEEccc
Confidence            6789999999999999999874 4457999999999999999999999875  499999997553 23689999999865


Q ss_pred             ccCccc-----HHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKD-----VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ++.-.+     ...++++..++|||||.++++..
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            544332     46789999999999999987664

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.53  E-value=4.4e-14  Score=105.47  Aligned_cols=106  Identities=24%  Similarity=0.370  Sum_probs=87.2

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV  203 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~  203 (300)
                      +.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++. ++++++++|+.+..  +++++||+|+++--
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhchhhccCceeEEEEECCC
Confidence            4589999999999999998755689999999999999999999988774 57999999998865  77899999999654


Q ss_pred             ccCc--------ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSV--------KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ....        .....+++++.++|||||.++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4322        1235789999999999999999764

...

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.51  E-value=1.4e-13  Score=110.63  Aligned_cols=147  Identities=18%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ...+.||.|+|.|+.+..++-....+|..+|+.+..++.|++.+....-  ...++++..+++...+.+.||+|++-+++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            4578999999999999988766667999999999999999977644211  24577777777765455799999999999


Q ss_pred             cCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      .|+.|.  ..+|+++...|+|+|.+++-++.......       .++...   ..-.++.+.++++|++||+++|..+.+
T Consensus       133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-------~~D~~D---sSvTRs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-------EFDEED---SSVTRSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-------EEETTT---TEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-------ccCCcc---CeeecCHHHHHHHHHHcCCEEEEeccc
Confidence            999765  57899999999999999999977654311       111111   112355679999999999999988765


Q ss_pred             c
Q 022248          283 F  283 (300)
Q Consensus       283 ~  283 (300)
                      .
T Consensus       203 ~  203 (218)
T PF05891_consen  203 K  203 (218)
T ss_dssp             T
T ss_pred             c
Confidence            3

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=4.2e-13  Score=117.89  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ...+|||+|||+|.++..+++. +..+++++|+++.+++.++++++..++   ..+++..|....  .++.||+|+++..
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---~~~~~~~D~~~~--~~~~fDlIvsNPP  270 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---EGEVFASNVFSD--IKGRFDMIISNPP  270 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEcccccc--cCCCccEEEECCC
Confidence            3568999999999999998874 567999999999999999999988876   346677776542  2578999999887


Q ss_pred             ccCc-----ccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          204 LCSV-----KDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       204 l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|..     .....+++++.++|||||.++++....
T Consensus       271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~  306 (342)
T PRK09489        271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (342)
T ss_pred             ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence            7753     234688999999999999999987543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.50  E-value=4.3e-12  Score=105.61  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=123.8

Q ss_pred             HHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHhC-C--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248          113 GYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD-T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (300)
Q Consensus       113 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  187 (300)
                      ..+.+.+..+.  ..+.+||||+||.|.+...+... +  ...+...|.++..++..++.+++.|+. +.++|.++|+.+
T Consensus       121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd  199 (311)
T PF12147_consen  121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQGDAFD  199 (311)
T ss_pred             HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEecCCCC
Confidence            34444444443  46789999999999998887763 3  368999999999999999999999996 455999999865


Q ss_pred             C---CCCCCcccEEEEcccccCcccH---HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248          188 I---PVSDASVDAVVGTLVLCSVKDV---DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL  261 (300)
Q Consensus       188 ~---~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (300)
                      .   .--+...++++.+...+.++|-   ...++-+.+.+.|||+++.......+..++.............|.. ...+
T Consensus       200 ~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM-RrRs  278 (311)
T PF12147_consen  200 RDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM-RRRS  278 (311)
T ss_pred             HhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE-EecC
Confidence            3   2224568999999999999874   3568999999999999999987777765544444322222112221 3567


Q ss_pred             chHHHHHHHhcCCcEEEEe
Q 022248          262 TRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       262 ~~~~~~~l~~aGf~~v~~~  280 (300)
                      ..|+.++++.|||+.+...
T Consensus       279 q~EmD~Lv~~aGF~K~~q~  297 (311)
T PF12147_consen  279 QAEMDQLVEAAGFEKIDQR  297 (311)
T ss_pred             HHHHHHHHHHcCCchhhhe
Confidence            8899999999999976654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PTZ00146 fibrillarin; Provisional

Probab=99.50  E-value=9.4e-13  Score=111.47  Aligned_cols=137  Identities=14%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++..  ...|+++|+++.+++.+.+.++..    .++.++.+|+...   ....+.||+|
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV  206 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVI  206 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEE
Confidence            577899999999999999999853  458999999987665555444322    4788999998542   2234589999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++...  ...+...++.++.++|||||.|++.......+..         .+...     .+. +++ +.|+++||+.++
T Consensus       207 ~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g---------~~pe~-----~f~-~ev-~~L~~~GF~~~e  268 (293)
T PTZ00146        207 FADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDST---------AKPEV-----VFA-SEV-QKLKKEGLKPKE  268 (293)
T ss_pred             EEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccC---------CCHHH-----HHH-HHH-HHHHHcCCceEE
Confidence            98764  2223345667899999999999995322111100         00000     011 245 778999999877


Q ss_pred             Eeee
Q 022248          279 LGNA  282 (300)
Q Consensus       279 ~~~~  282 (300)
                      ....
T Consensus       269 ~v~L  272 (293)
T PTZ00146        269 QLTL  272 (293)
T ss_pred             EEec
Confidence            7654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.49  E-value=1.2e-12  Score=112.83  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=82.2

Q ss_pred             CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc----
Q 022248          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT----  201 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~----  201 (300)
                      .+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++..++. .++.|+.+|+.+ +++++.||+|+++    
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi  193 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFE-PLAGQKIDIIVSNPPYI  193 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence            68999999999999999874 4579999999999999999999888764 359999999865 3444589999985    


Q ss_pred             ---------ccccCcc------------cHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 ---------LVLCSVK------------DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ---------~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                               .+..+-+            ....++.++.++|+|||++++..
T Consensus       194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                     1122211            34568899999999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=1.9e-12  Score=114.67  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-C
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-S  191 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~  191 (300)
                      +...++..+. ++.+|||+|||+|.++..++. .++.+++++|+|+.+++.|+++++..+.   ++.++.+|+.+..+ .
T Consensus       241 LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~  316 (423)
T PRK14966        241 LVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA---RVEFAHGSWFDTDMPS  316 (423)
T ss_pred             HHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEcchhcccccc
Confidence            3333444332 456999999999999998876 4678999999999999999999987763   78999999865432 2


Q ss_pred             CCcccEEEEccccc-----C----------------ccc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH
Q 022248          192 DASVDAVVGTLVLC-----S----------------VKD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN  246 (300)
Q Consensus       192 ~~~~D~v~~~~~l~-----~----------------~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  246 (300)
                      .++||+|+++---.     .                -.+    ...+++.+.+.|+|||.+++... . .          
T Consensus       317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~-~----------  384 (423)
T PRK14966        317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F-D----------  384 (423)
T ss_pred             CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c-c----------
Confidence            45799999953100     0                001    23567777889999999876441 1 1          


Q ss_pred             hhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                                    ..+.+.+++++.||..+++......
T Consensus       385 --------------Q~e~V~~ll~~~Gf~~v~v~kDl~G  409 (423)
T PRK14966        385 --------------QGAAVRGVLAENGFSGVETLPDLAG  409 (423)
T ss_pred             --------------HHHHHHHHHHHCCCcEEEEEEcCCC
Confidence                          0137788888999998887654444

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.48  E-value=1.3e-12  Score=106.62  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=82.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++ .++.+++++|+++.+++.++++++..++.  +++++.+|+.. ++.....+|.++..
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECchHHHHhhCCCCCCEEEEE
Confidence            4678999999999999998875 35679999999999999999999887763  79999998854 22222346776553


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .    ..+...+++++.++|+|||++++...
T Consensus       117 ~----~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        117 G----GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             C----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            2    23557889999999999999999874

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.47  E-value=1.6e-12  Score=111.86  Aligned_cols=105  Identities=19%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-  202 (300)
                      ++.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++..++. .++.++.+|+.+. ++++.||+|+++- 
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc-cCCCCccEEEECCC
Confidence            4578999999999999999874 5679999999999999999999988874 4799999997542 3456899999851 


Q ss_pred             -----cc-------cCc------------ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 -----VL-------CSV------------KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 -----~l-------~~~------------~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                           .+       .+-            .....+++++.++|+|||++++..
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                 01       111            112567899999999999998744

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.47  E-value=2.2e-12  Score=108.83  Aligned_cols=135  Identities=19%  Similarity=0.158  Sum_probs=98.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||+|.|.++..+++ .++.+++..|. +.+++.+++        .++++++.+|+. -+++.  +|++++.+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~  166 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRH  166 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeeh
Confidence            3557899999999999999987 68899999998 888888887        269999999998 55654  99999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCC--cEEEEEecccCCCchHHHHH--HHhhh-hhhhhhcCCcccchHHHHHHH
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPG--GIYLFVEHVAAKDGTFLKFW--QNVVD-PLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ++|.+++.  ..+|+++++.|+||  |+|+|.+....+........  ...+. .+.....+..++.+||+++|.
T Consensus       167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~  241 (241)
T PF00891_consen  167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK  241 (241)
T ss_dssp             SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence            99999765  47899999999999  99999998765443221111  01111 112222356788889988874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.47  E-value=1.1e-12  Score=108.35  Aligned_cols=100  Identities=23%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++++..++.  ++++..+|........+.||+|++...
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~I~~~~~  153 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGWPAYAPFDRILVTAA  153 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccCCCcCCCcCEEEEccC
Confidence            467899999999999998777643 48999999999999999999888764  799999997653223478999999876


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.++      .+++.+.|+|||++++...
T Consensus       154 ~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        154 APEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             chhh------hHHHHHhcCCCcEEEEEEc
Confidence            6654      3567899999999998653

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.46  E-value=2.5e-13  Score=108.45  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=113.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      +....++|||||-|.....+....-.+++-+|.|-.|++.++..- ..+   -.+...++|-+.++|.++++|+|+++..
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~---i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS---IETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc---eEEEEEecchhcccccccchhhhhhhhh
Confidence            456789999999999999998766678999999999999987542 122   2466788999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh-hhhhhh-hc-CCcccchHHHHHHHhcCCcEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV-DPLQQI-VS-DGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      +|++.|....+.+|+..|||+|.|+.+-.....--++...++..- ...+.. .+ .++.-..++..+|.+|||..+.+.
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD  226 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD  226 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence            999999999999999999999999987654433212222221110 000100 00 122334689999999999976665

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.6e-12  Score=104.12  Aligned_cols=108  Identities=21%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .++.+|||||||+|+.+.-|++-.+ +|+.+|..+...+.|+++++..++.  |+.++++|...---+.+
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~G~~~~a  137 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSKGWPEEA  137 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcccCCCCCC
Confidence            334444444 5789999999999999988886434 9999999999999999999999974  79999999876433458


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .||.|++..+...+|      +.+.+.||+||++++..
T Consensus       138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence            999999999888877      56888999999999966

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.46  E-value=7.2e-13  Score=108.19  Aligned_cols=101  Identities=22%  Similarity=0.296  Sum_probs=80.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|+++..++.  .....|+++|..+..++.|++++...+..  ++.++.+|....--..+.||.|++.
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g~~~~apfD~I~v~  148 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEGWPEEAPFDRIIVT  148 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGTTGGG-SEEEEEES
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhccccCCCcCEEEEe
Confidence            6889999999999999988876  34457999999999999999999988874  8999999986643345789999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .....++      ..+.+.|++||+|++.-.
T Consensus       149 ~a~~~ip------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  149 AAVPEIP------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             SBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred             eccchHH------HHHHHhcCCCcEEEEEEc
Confidence            8887665      568888999999999553

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=2e-12  Score=112.18  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc---
Q 022248          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL---  202 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---  202 (300)
                      .+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++++..++. .+++++.+|+.+. +++++||+|+++-   
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi  212 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA-LPGRRYDLIVSNPPYV  212 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence            68999999999999999874 5679999999999999999999988764 4799999997542 2356899999861   


Q ss_pred             ---c-------ccCcc------------cHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 ---V-------LCSVK------------DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 ---~-------l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         .       ..+-+            ....+++++.++|+|||.+++..
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               0       01111            12567899999999999999843

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.45  E-value=1.8e-12  Score=107.03  Aligned_cols=131  Identities=18%  Similarity=0.251  Sum_probs=102.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~  201 (300)
                      ...+|||+|||+|.+++.++++ ...++++||+.+.+.+.|+++++.+++. ++++++++|+....  ..-.+||+|+|+
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcccccccCEEEeC
Confidence            4789999999999999999986 5589999999999999999999998886 79999999998763  344579999996


Q ss_pred             ccccCc------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248          202 LVLCSV------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR  263 (300)
Q Consensus       202 ~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (300)
                      =-.+..                  -+.+.+++...++|||||.+.++-...  .                        ..
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e--r------------------------l~  176 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE--R------------------------LA  176 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH--H------------------------HH
Confidence            221111                  134678999999999999999987311  0                        11


Q ss_pred             HHHHHHHhcCCcEEEEeee
Q 022248          264 QTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++.+++.+.+|+...+...
T Consensus       177 ei~~~l~~~~~~~k~i~~V  195 (248)
T COG4123         177 EIIELLKSYNLEPKRIQFV  195 (248)
T ss_pred             HHHHHHHhcCCCceEEEEe
Confidence            6677777777776555544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.43  E-value=6.9e-13  Score=105.39  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~  203 (300)
                      ...-|||||||+|..+..+.+ .+..++|+|+|+.|++.|.+..-       .-.++.+|+ +-+||+.++||.+|+..+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~-------egdlil~DMG~GlpfrpGtFDg~ISISA  121 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVEREL-------EGDLILCDMGEGLPFRPGTFDGVISISA  121 (270)
T ss_pred             CCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhh-------hcCeeeeecCCCCCCCCCccceEEEeee
Confidence            467899999999988877764 56899999999999999987422       124566666 568999999999999888


Q ss_pred             ccCcc-------c----HHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVK-------D----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.++-       +    ...++..++.+|++|++.++--
T Consensus       122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            77661       1    2356888999999999998854

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.42  E-value=9.6e-12  Score=97.53  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             HHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCccc
Q 022248          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (300)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  196 (300)
                      +..+. .++.+++|||||+|..+..++. .+..+++++|-++++++..+++.+..++  ++++++.+++.+.--...++|
T Consensus        27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEeccchHhhcCCCCCC
Confidence            33443 6789999999999999999985 4678999999999999999999999996  599999999865421223799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .|+....    .+.+.+++.+...|||||++++--
T Consensus       105 aiFIGGg----~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         105 AIFIGGG----GNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEEECCC----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence            9999876    356778999999999999999854

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.42  E-value=2.8e-12  Score=92.71  Aligned_cols=101  Identities=34%  Similarity=0.496  Sum_probs=84.8

Q ss_pred             eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcccccC
Q 022248          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS  206 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~  206 (300)
                      +|+|+|||.|.++..++.....+++++|+++.+++.+++.......  .++.++..|..+... ..+.||+|++...+++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhccccCCceEEEEEccceee
Confidence            5899999999999988875677999999999999998864333332  478899999877653 5678999999999988


Q ss_pred             -cccHHHHHHHHHHcccCCcEEEEE
Q 022248          207 -VKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       207 -~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                       ......+++.+.+.|+|||.+++.
T Consensus        79 ~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 LVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence             677788999999999999999885

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.42  E-value=2.8e-12  Score=111.37  Aligned_cols=100  Identities=27%  Similarity=0.222  Sum_probs=82.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++..+  ..++++|+++.+++.|+++++..+.  +++.++.+|+.......+.||+|++.
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCChhhcccccCCccEEEEC
Confidence            4678999999999999999987433  4799999999999999999988876  47999999987665455789999998


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ..+.++      ...+.+.|+|||++++..
T Consensus       157 ~g~~~i------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        157 VGVDEV------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CchHHh------HHHHHHhcCCCCEEEEEe
Confidence            665544      345778999999998853

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=1.8e-11  Score=105.35  Aligned_cols=129  Identities=24%  Similarity=0.294  Sum_probs=95.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..++.. +..+++++|+++.+++.+++++. ... ..++.++.+|+... +.+++||+|+++-
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-~~~i~~~~~d~~~~-~~~~~fD~Iv~np  183 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-GARVEFLQGDWFEP-LPGGRFDLIVSNP  183 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-CCcEEEEEccccCc-CCCCceeEEEECC
Confidence            45679999999999999999874 46799999999999999999987 222 24799999998543 2357899999852


Q ss_pred             ccc--------------------------CcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248          203 VLC--------------------------SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS  256 (300)
Q Consensus       203 ~l~--------------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (300)
                      -..                          .+.....+++++.++|+|||++++..  ...                    
T Consensus       184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~--g~~--------------------  241 (275)
T PRK09328        184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI--GYD--------------------  241 (275)
T ss_pred             CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE--Cch--------------------
Confidence            110                          01123567888899999999999843  100                    


Q ss_pred             CCcccchHHHHHHHhcCCcEEEEee
Q 022248          257 DGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       257 ~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                          ..+++.+++.+.||..+++..
T Consensus       242 ----~~~~~~~~l~~~gf~~v~~~~  262 (275)
T PRK09328        242 ----QGEAVRALLAAAGFADVETRK  262 (275)
T ss_pred             ----HHHHHHHHHHhCCCceeEEec
Confidence                012678888899999777753

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.41  E-value=2.8e-12  Score=102.04  Aligned_cols=122  Identities=24%  Similarity=0.260  Sum_probs=79.3

Q ss_pred             HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ..+++.+.  ++...|.|+|||.+.++..+.  ...+|...|+...                 +-.++.+|+..+|++++
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-----------------n~~Vtacdia~vPL~~~  121 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-----------------NPRVTACDIANVPLEDE  121 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------------STTEEES-TTS-S--TT
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC-----------------CCCEEEecCccCcCCCC
Confidence            33444443  345789999999998886653  3457999998653                 22467899999999999


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      ++|++++..+|.. .|...++.|..|+|||||.|.|.+....-                       ...+++.+.++..|
T Consensus       122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf-----------------------~~~~~F~~~~~~~G  177 (219)
T PF05148_consen  122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRF-----------------------ENVKQFIKALKKLG  177 (219)
T ss_dssp             -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHHHCTT
T ss_pred             ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccC-----------------------cCHHHHHHHHHHCC
Confidence            9999999888876 68899999999999999999999843211                       12347888899999


Q ss_pred             CcEEEEe
Q 022248          274 FSSVELG  280 (300)
Q Consensus       274 f~~v~~~  280 (300)
                      |+.+..+
T Consensus       178 F~~~~~d  184 (219)
T PF05148_consen  178 FKLKSKD  184 (219)
T ss_dssp             EEEEEEE
T ss_pred             CeEEecc
Confidence            9987754

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.40  E-value=2.7e-13  Score=109.36  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=75.0

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS  206 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  206 (300)
                      ..++|+|||+|..++.++.. .-+|+|+|+|+.|++.|++........ ....+...+..++--.++++|+|++..++|+
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccccCCCcceeeehhhhhHHh
Confidence            48999999999777777754 559999999999999998874332211 1222333333444334899999999999999


Q ss_pred             cccHHHHHHHHHHcccCCc-EEEEEe
Q 022248          207 VKDVDMTLQEVRRVLKPGG-IYLFVE  231 (300)
Q Consensus       207 ~~~~~~~l~~~~~~LkpgG-~l~~~~  231 (300)
                      + |.+.+++++.|+||++| .+.+=.
T Consensus       113 F-dle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen  113 F-DLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             h-chHHHHHHHHHHcCCCCCEEEEEE
Confidence            8 77788999999998866 555533

>PHA03411 putative methyltransferase; Provisional

Probab=99.40  E-value=5.8e-12  Score=105.52  Aligned_cols=124  Identities=13%  Similarity=0.147  Sum_probs=92.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ...+|||+|||+|.++..++.. .+.+++++|+++.+++.++++.       +++.++.+|+..... ++.||+|+++-.
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsNPP  135 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISNPP  135 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence            4579999999999998888764 3579999999999999998763       368899999987653 468999999766


Q ss_pred             ccCccc--------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248          204 LCSVKD--------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR  263 (300)
Q Consensus       204 l~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (300)
                      ..+.+.                    ...++.....+|+|+|.+++.-....                   ......+.+
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------------~y~~sl~~~  196 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------------YYDGTMKSN  196 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------------------cccccCCHH
Confidence            555321                    23566777889999997777621110                   012345567


Q ss_pred             HHHHHHHhcCCc
Q 022248          264 QTGNNISEAGFS  275 (300)
Q Consensus       264 ~~~~~l~~aGf~  275 (300)
                      +++++|+++||.
T Consensus       197 ~y~~~l~~~g~~  208 (279)
T PHA03411        197 KYLKWSKQTGLV  208 (279)
T ss_pred             HHHHHHHhcCcE
Confidence            899999999997

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.39  E-value=3.5e-12  Score=104.87  Aligned_cols=140  Identities=9%  Similarity=0.069  Sum_probs=99.3

Q ss_pred             CchhHHHHHHHHHhhhhHhH-HHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHH
Q 022248           88 RPDWYEEFYASVMNSSMKSY-EAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ  165 (300)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~  165 (300)
                      ..+||++.|..-    ...| .......+.+.+..+. .++.+||+.|||.|.-...|++ .+..|+|+|+|+.+++.+.
T Consensus         8 ~~~fW~~rw~~~----~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~   82 (226)
T PRK13256          8 NNQYWLDRWQND----DVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFF   82 (226)
T ss_pred             CHHHHHHHHhcC----CCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHH
Confidence            335666655532    2223 1122333333344443 3568999999999999999986 4778999999999999986


Q ss_pred             HHHHH-------c---CCCCCCEEEEecccCcCCCC---CCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEE
Q 022248          166 TAAVA-------A---GLPLTNFKFLQAVGEAIPVS---DASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       166 ~~~~~-------~---~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      +....       .   .....++++.++|+.+++..   .+.||+|+-..+++.++.  ..+..+.+.++|+|||.++++
T Consensus        83 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256         83 SQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             HHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            63210       0   01124789999999998632   268999999999998853  357899999999999999998


Q ss_pred             ec
Q 022248          231 EH  232 (300)
Q Consensus       231 ~~  232 (300)
                      ..
T Consensus       163 ~~  164 (226)
T PRK13256        163 VM  164 (226)
T ss_pred             EE
Confidence            75

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.39  E-value=9.4e-12  Score=102.47  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH-cC---------CCCCCEEEE
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AG---------LPLTNFKFL  181 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~-~~---------~~~~~~~~~  181 (300)
                      ..+.++++.+. .++.+||..|||.|.-...|++. +.+|+|+|+|+.+++.+.+.... ..         ....++++.
T Consensus        24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  102 (218)
T PF05724_consen   24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY  102 (218)
T ss_dssp             HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence            34444444433 45679999999999999999975 77999999999999998543221 00         112468999


Q ss_pred             ecccCcCCCCC-CcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCC
Q 022248          182 QAVGEAIPVSD-ASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDG  258 (300)
Q Consensus       182 ~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (300)
                      ++|+..++-.. ++||+|+-...++.++  ......+.+.++|+|||.++++........            ..  ....
T Consensus       103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~------------~~--GPPf  168 (218)
T PF05724_consen  103 CGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE------------ME--GPPF  168 (218)
T ss_dssp             ES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC------------SS--SSS-
T ss_pred             EcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC------------CC--CcCC
Confidence            99998876433 5799999888888774  456789999999999999555543222110            00  0011


Q ss_pred             cccchHHHHHHHhcCCcEEEEeeecc
Q 022248          259 CHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       259 ~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ..+.+++.+++. .+|++..++....
T Consensus       169 ~v~~~ev~~l~~-~~f~i~~l~~~~~  193 (218)
T PF05724_consen  169 SVTEEEVRELFG-PGFEIEELEEEDS  193 (218)
T ss_dssp             ---HHHHHHHHT-TTEEEEEEEEEE-
T ss_pred             CCCHHHHHHHhc-CCcEEEEEecccc
Confidence            335578888887 8999888875443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.39  E-value=5.6e-12  Score=103.74  Aligned_cols=95  Identities=24%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ...++||||+|.|..+..++. ...+|+++|.|+.|....+++    |     ++.+..  .+..-.+.+||+|.|.++|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g-----~~vl~~--~~w~~~~~~fDvIscLNvL  161 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----G-----FTVLDI--DDWQQTDFKFDVISCLNVL  161 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----C-----CeEEeh--hhhhccCCceEEEeehhhh
Confidence            457899999999999999975 445899999999997766654    3     333322  2233234689999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ....++..+|+.+++.|+|+|++++.-
T Consensus       162 DRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  162 DRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999999999999999999999954

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.39  E-value=1e-11  Score=119.35  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=101.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEcc-
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTL-  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~-  202 (300)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++...+++++++|+.+. ....++||+|++.- 
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            5789999999999999999875445799999999999999999999887545899999998653 11146899999842 


Q ss_pred             ----------cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          203 ----------VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       203 ----------~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                                ......+...++..+.++|+|||.+++.......                          ....+++.++
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~--------------------------~~~~~~~~~~  671 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF--------------------------KMDEEGLAKL  671 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC--------------------------ChhHHHHHhC
Confidence                      1111234567888999999999999886532110                          0125777889


Q ss_pred             CCcEEEEeeeccC
Q 022248          273 GFSSVELGNAFLS  285 (300)
Q Consensus       273 Gf~~v~~~~~~~~  285 (300)
                      |+....++.....
T Consensus       672 g~~~~~i~~~~~~  684 (702)
T PRK11783        672 GLKAEEITAKTLP  684 (702)
T ss_pred             CCeEEEEecCCCC
Confidence            9997777755544

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.38  E-value=1e-11  Score=114.92  Aligned_cols=128  Identities=13%  Similarity=0.163  Sum_probs=94.7

Q ss_pred             CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--  202 (300)
                      +.+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. +++.++.+|+... ++.+.||+|+++-  
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNPPY  216 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh-CcCCCccEEEECCCC
Confidence            46899999999999998876 46789999999999999999999887764 4789999997542 3356899999842  


Q ss_pred             ------------cccCcc------------cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCC
Q 022248          203 ------------VLCSVK------------DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDG  258 (300)
Q Consensus       203 ------------~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (300)
                                  +..+-+            ....+++.+.++|+|||.+++..  ...                      
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi--g~~----------------------  272 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI--GFK----------------------  272 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE--CCc----------------------
Confidence                        111111            12456788899999999998743  111                      


Q ss_pred             cccchHHHHHHHhcCCcEEEEee
Q 022248          259 CHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       259 ~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                        ..+.+.+++.+.||..+++..
T Consensus       273 --q~~~v~~~~~~~g~~~~~~~~  293 (506)
T PRK01544        273 --QEEAVTQIFLDHGYNIESVYK  293 (506)
T ss_pred             --hHHHHHHHHHhcCCCceEEEe
Confidence              012667778888988776653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.38  E-value=2.2e-11  Score=111.04  Aligned_cols=109  Identities=20%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  197 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.++++++..|+.  ++.++.+|+..++    ...+.||.
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEEeCChhhcccccccccccCCE
Confidence            46789999999999999998874  3468999999999999999999998874  7999999998765    44678999


Q ss_pred             EEEc------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGT------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++.      .++.+-++                ...++.++.+.|||||+|+.++...
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9963      23333332                3567999999999999999987544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.36  E-value=3.8e-11  Score=109.92  Aligned_cols=149  Identities=23%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----  188 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----  188 (300)
                      +...+++.+. .++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++++..++.  +++|+.+|+.+.    
T Consensus       285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~--~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD--NVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEeChHHhhhhh
Confidence            3344444443 45689999999999999999875 469999999999999999999888874  799999998642    


Q ss_pred             CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          189 PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       189 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      ++.++.||+|++.---.   .....++.+.+ ++|++.++++.....    +.                     .++. .
T Consensus       362 ~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCnp~t----la---------------------RDl~-~  411 (443)
T PRK13168        362 PWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCNPAT----LA---------------------RDAG-V  411 (443)
T ss_pred             hhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeChHH----hh---------------------ccHH-H
Confidence            34457899999742111   12345555555 689999888873211    10                     1333 3


Q ss_pred             HHhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          269 ISEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                      |.+.||++.++.-.++   |+.|+|+.-++
T Consensus       412 L~~~gY~l~~i~~~Dm---FP~T~HvE~v~  438 (443)
T PRK13168        412 LVEAGYRLKRAGMLDM---FPHTGHVESMA  438 (443)
T ss_pred             HhhCCcEEEEEEEecc---CCCCCcEEEEE
Confidence            4578999888887766   67788876654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.36  E-value=2.2e-11  Score=97.59  Aligned_cols=158  Identities=22%  Similarity=0.231  Sum_probs=110.4

Q ss_pred             CCC-eEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccCcC--CC------CCC
Q 022248          125 KAK-KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAI--PV------SDA  193 (300)
Q Consensus       125 ~~~-~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~  193 (300)
                      ... +|||||||+|..+.++++ .+..++.-.|+++......+..+...++.  ++ .-+..|+...  +.      ..+
T Consensus        24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCCCccccccccCCC
Confidence            444 599999999999999987 57788999999999988888887776653  22 1233344333  22      356


Q ss_pred             cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCC---chHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKD---GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      .||+|+|.+++|..+  ..+.+++...++|+|||.|++..+.....   ..........+....  ...+..+.+++.++
T Consensus       102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd--p~~GiRD~e~v~~l  179 (204)
T PF06080_consen  102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD--PEWGIRDIEDVEAL  179 (204)
T ss_pred             CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC--CCcCccCHHHHHHH
Confidence            899999999999775  44678999999999999999988644221   011111111111111  12357788899999


Q ss_pred             HHhcCCcEEEEeeeccCC
Q 022248          269 ISEAGFSSVELGNAFLSN  286 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~~~  286 (300)
                      .+++|++.++...+--++
T Consensus       180 A~~~GL~l~~~~~MPANN  197 (204)
T PF06080_consen  180 AAAHGLELEEDIDMPANN  197 (204)
T ss_pred             HHHCCCccCcccccCCCC
Confidence            999999987777665554

The function of this family is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.1e-11  Score=104.37  Aligned_cols=111  Identities=25%  Similarity=0.310  Sum_probs=86.5

Q ss_pred             HHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       118 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+. ..+.+|||+|||.|.++..+++ .+..+++-+|++..+++.++++++.+++.  +..++..|... +.++ +|
T Consensus       150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~-~v~~-kf  225 (300)
T COG2813         150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYE-PVEG-KF  225 (300)
T ss_pred             HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEecccc-cccc-cc
Confidence            344444 3355999999999999999998 46789999999999999999999998874  43455555433 2333 89


Q ss_pred             cEEEEcccccCcccH-----HHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDV-----DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+|+=-+|.=.+.     .+++....+.|++||.|.++-.
T Consensus       226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            999998766643222     3789999999999999999986

>PRK00811 spermidine synthase; Provisional

Probab=99.36  E-value=2.5e-11  Score=104.32  Aligned_cols=108  Identities=16%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC--C-CCCCEEEEecccCcC-CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNFKFLQAVGEAI-PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~--~-~~~~~~~~~~d~~~~-~~~~~~~D~v  198 (300)
                      +.+.+||+||||+|..+..+++. ...+++++|+++.+++.|++.+...+  . ..++++++.+|+... ...+++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            46789999999999999999875 34689999999999999999876532  1 246899999998663 3346789999


Q ss_pred             EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++.......+.    ...+++.+++.|+|||++++..
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            98654332222    2567899999999999988743

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.7e-11  Score=99.23  Aligned_cols=103  Identities=24%  Similarity=0.274  Sum_probs=91.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||.|.|+|.++.+|+.  .+..+++.+|+.+...+.|+++++..++. +++.+..+|+.+.-+++ .||+|+..
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~~~-~vDav~LD  170 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGIDEE-DVDAVFLD  170 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEecccccccccc-ccCEEEEc
Confidence            6899999999999999999986  35579999999999999999999998886 45999999998876654 89999974


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                           ++++.++++.+.++|||||.+++..++
T Consensus       171 -----mp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         171 -----LPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             -----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence                 589999999999999999999998754

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.34  E-value=1.3e-11  Score=100.13  Aligned_cols=96  Identities=22%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  193 (300)
                      .++.+|||+|||+|.++..+++.  ...+++++|+++.+           .  .+++.++++|+.+.+        ++++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~--~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P--IENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c--CCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            57889999999999999888763  34589999999854           1  136788888886542        4567


Q ss_pred             cccEEEEccccc--------Cc---ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          194 SVDAVVGTLVLC--------SV---KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       194 ~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .||+|++....+        +.   .+...++..+.++|+|||++++..+
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            899999865322        11   1235789999999999999999653

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.33  E-value=3e-11  Score=97.93  Aligned_cols=105  Identities=30%  Similarity=0.380  Sum_probs=83.4

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--CCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~  200 (300)
                      ....+||||||.|.++..+|. .++..++|+|+....+..+.+++...++  .|+.++++|+..+ .  ++++++|.|..
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEE
Confidence            344899999999999999987 6889999999999999999999998887  4999999999773 2  56789999998


Q ss_pred             cccccCccc--------HHHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .+---+...        ...++..+.++|+|||.+.+.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            764333321        1468999999999999999977

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=9.7e-11  Score=100.24  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=94.6

Q ss_pred             eEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--cc
Q 022248          128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--VL  204 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~l  204 (300)
                      +|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++++..++  .++.++..|+..- . .++||+|+++=  +-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip  188 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIP  188 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-c-CCceeEEEeCCCCCC
Confidence            7999999999999999874 456999999999999999999999987  4677777765432 2 24899999851  11


Q ss_pred             cC---c--------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248          205 CS---V--------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL  261 (300)
Q Consensus       205 ~~---~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (300)
                      ..   .                    .-...++.++.+.|+|||.+++..-  ..                        .
T Consensus       189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g--~~------------------------q  242 (280)
T COG2890         189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG--LT------------------------Q  242 (280)
T ss_pred             CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC--CC------------------------c
Confidence            11   0                    1124678889999999988888551  11                        1


Q ss_pred             chHHHHHHHhcC-CcEEEEeeeccC
Q 022248          262 TRQTGNNISEAG-FSSVELGNAFLS  285 (300)
Q Consensus       262 ~~~~~~~l~~aG-f~~v~~~~~~~~  285 (300)
                      .+.+.+++.+.| |..+........
T Consensus       243 ~~~v~~~~~~~~~~~~v~~~~d~~g  267 (280)
T COG2890         243 GEAVKALFEDTGFFEIVETLKDLFG  267 (280)
T ss_pred             HHHHHHHHHhcCCceEEEEEecCCC
Confidence            237889999999 777777665554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.32  E-value=1.7e-11  Score=106.86  Aligned_cols=107  Identities=20%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC---------CCCCCEEEEecccCcC------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAI------P  189 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~d~~~~------~  189 (300)
                      ++.+|||+|||-|.-+.-+.......++|+|++...++.|+++.+...         .. -...|+.+|....      +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhhhcc
Confidence            778999999998887766666566799999999999999999983211         11 1467788877532      2


Q ss_pred             CCCCcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          190 VSDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .....||+|-|.+++|+.    .....+|+.+...|+|||+++...+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            223599999999999987    2345689999999999999999774

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK03612 spermidine synthase; Provisional

Probab=99.32  E-value=6e-11  Score=110.34  Aligned_cols=108  Identities=21%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHH--HHHc---CCCCCCEEEEecccCcC-CCCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA--AVAA---GLPLTNFKFLQAVGEAI-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~--~~~~---~~~~~~~~~~~~d~~~~-~~~~~~~D  196 (300)
                      +++++|||||||+|..+..+++.+. .+++++|+++++++.++++  +...   .+..++++++.+|+.+. ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4678999999999999999987655 7999999999999999983  3221   23336899999998763 33347899


Q ss_pred             EEEEcccccCccc-----HHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKD-----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|++.......+.     ..++++.+++.|||||.+++..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9999754333222     1357899999999999988854

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.32  E-value=4.7e-11  Score=99.81  Aligned_cols=103  Identities=21%  Similarity=0.232  Sum_probs=84.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-----CCCCccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-----VSDASVD  196 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D  196 (300)
                      ++.+|||+|||+|..+..++..  ...+++++|+++.+++.|+++++..++. ++++++.+|+.+. +     .+.++||
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            6789999999999988888763  4579999999999999999999999986 6899999998653 2     1246899


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|++...-   +....++..+.+.|+|||.+++-+
T Consensus       147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence            99985321   344677899999999999988754

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.31  E-value=3.4e-11  Score=97.18  Aligned_cols=152  Identities=17%  Similarity=0.149  Sum_probs=96.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCC-----C-----------------------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGL-----P-----------------------  174 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~-----~-----------------------  174 (300)
                      ..+..+|||||..|.++..+++. ....++|+||++..++.|++.++...-     .                       
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            56789999999999999999984 445799999999999999997753210     0                       


Q ss_pred             -----CCCEEEEecccC-----cCCCCCCcccEEEEcccccCc------ccHHHHHHHHHHcccCCcEEEEEecccCCCc
Q 022248          175 -----LTNFKFLQAVGE-----AIPVSDASVDAVVGTLVLCSV------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG  238 (300)
Q Consensus       175 -----~~~~~~~~~d~~-----~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  238 (300)
                           +.++.|...+..     -+.+....||+|+|..+-.++      .....+++++.++|.|||+|++.-.....  
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks--  214 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS--  214 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH--
Confidence                 001112111110     012345789999997765544      23578999999999999999885422211  


Q ss_pred             hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc--CCcEEEE
Q 022248          239 TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA--GFSSVEL  279 (300)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~v~~  279 (300)
                       ... ..+........+..-.+.++.+.+++.+.  ||+-++-
T Consensus       215 -Y~k-aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~  255 (288)
T KOG2899|consen  215 -YKK-AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVED  255 (288)
T ss_pred             -HHH-HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecc
Confidence             111 11112222222233455678888888876  6664443

>PRK01581 speE spermidine synthase; Validated

Probab=99.30  E-value=1.7e-10  Score=100.35  Aligned_cols=138  Identities=17%  Similarity=0.149  Sum_probs=95.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHH--HH---HcCCCCCCEEEEecccCcC-CCCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--AV---AAGLPLTNFKFLQAVGEAI-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~--~~---~~~~~~~~~~~~~~d~~~~-~~~~~~~D  196 (300)
                      ..+.+||+||||+|..+..+++.. ..++++||+++.+++.|++.  +.   ...+..++++++.+|+... ....+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            456799999999999988888754 46899999999999999962  11   1223346999999999763 44457899


Q ss_pred             EEEEcccccC---ccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          197 AVVGTLVLCS---VKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       197 ~v~~~~~l~~---~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      +|++...-..   ...  -..+++.+++.|+|||++++....+.    ..   ...+              ..+.+.|++
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~----~~---~~~~--------------~~i~~tL~~  287 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA----DA---PLVY--------------WSIGNTIEH  287 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh----hh---HHHH--------------HHHHHHHHH
Confidence            9998742111   111  14688999999999999877532110    00   0000              146688888


Q ss_pred             cCCcEEEEeee
Q 022248          272 AGFSSVELGNA  282 (300)
Q Consensus       272 aGf~~v~~~~~  282 (300)
                      +||........
T Consensus       288 af~~v~~y~t~  298 (374)
T PRK01581        288 AGLTVKSYHTI  298 (374)
T ss_pred             hCCceEEEEEe
Confidence            99987666544

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.30  E-value=1.1e-10  Score=98.61  Aligned_cols=124  Identities=16%  Similarity=0.165  Sum_probs=89.0

Q ss_pred             CCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEEEcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGTL  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~  202 (300)
                      ..+|||+|||+|.++..++.. ++.+++++|+++.+++.|+++++..+     ++++.+|+.+. + ...+.||+|+++-
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence            458999999999999998863 56799999999999999999987654     36788887542 2 1135799999863


Q ss_pred             cc------cCc----------------cc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248          203 VL------CSV----------------KD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS  256 (300)
Q Consensus       203 ~l------~~~----------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (300)
                      -.      ..+                .+    ...++..+.++|+|||++++...  ..+                   
T Consensus       162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~--~~~-------------------  220 (251)
T TIGR03704       162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS--ERQ-------------------  220 (251)
T ss_pred             CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--cch-------------------
Confidence            11      000                01    24677888899999999998652  111                   


Q ss_pred             CCcccchHHHHHHHhcCCcEEEEe
Q 022248          257 DGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       257 ~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                           .+++..+|++.||+..-..
T Consensus       221 -----~~~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       221 -----APLAVEAFARAGLIARVAS  239 (251)
T ss_pred             -----HHHHHHHHHHCCCCceeeE
Confidence                 1266778888999854444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.29  E-value=3.8e-11  Score=109.32  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+..+++. ...+++++|+++.+++.++++++..++. .++.+..+|....+.  ..++||.|++
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEE
Confidence            46789999999999999998874 3479999999999999999999988875 345557777665543  4678999995


Q ss_pred             c------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 T------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .      .++...++                ...+|.++.++|||||+|++++....
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            2      34444443                35689999999999999999886553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04457 spermidine synthase; Provisional

Probab=99.29  E-value=3.1e-11  Score=102.60  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=82.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++ .+..+++++|+++.+++.|++.+...+. .++++++.+|+.+. .-..++||+|++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-GERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-CCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            3567999999999999998876 4678999999999999999988754332 25899999998553 2223689999975


Q ss_pred             ccc-cCcc---cHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVL-CSVK---DVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l-~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..- ...+   ....+++++.+.|+|||++++-.+
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            311 1112   126889999999999999998543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.29  E-value=1.2e-10  Score=104.32  Aligned_cols=109  Identities=19%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|.++..++.....+++++|+++.+++.|+++++.+++...+++++.+|+.+.-    ...++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            57899999999999988766544559999999999999999999998875347999999986641    13468999998


Q ss_pred             cccccC---------cccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          201 TLVLCS---------VKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       201 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .--...         ..+...++....++|+|||.+++....
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            521110         012345667788999999999987643

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.29  E-value=6.1e-11  Score=96.58  Aligned_cols=120  Identities=20%  Similarity=0.288  Sum_probs=90.5

Q ss_pred             HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +.+++.+.  +....|.|+|||.+.++.    .....|+..|+-..                 +-.++.+|+..+|.+++
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------------~~~V~~cDm~~vPl~d~  227 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------------NERVIACDMRNVPLEDE  227 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC-----------------CCceeeccccCCcCccC
Confidence            33444443  456789999999996654    33447999997542                 45678899999999999


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      +.|++++..+|.. .|...++.|+.|+|+|||.++|.+....                       +-+...+.+.|...|
T Consensus       228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR-----------------------f~dv~~f~r~l~~lG  283 (325)
T KOG3045|consen  228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR-----------------------FSDVKGFVRALTKLG  283 (325)
T ss_pred             cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh-----------------------cccHHHHHHHHHHcC
Confidence            9999998777765 6888999999999999999999884221                       112236778888999


Q ss_pred             CcEEEEe
Q 022248          274 FSSVELG  280 (300)
Q Consensus       274 f~~v~~~  280 (300)
                      |.+....
T Consensus       284 F~~~~~d  290 (325)
T KOG3045|consen  284 FDVKHKD  290 (325)
T ss_pred             Ceeeehh
Confidence            9976554

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=3e-11  Score=110.58  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.++++++..++.  +++++.+|+..++ +++.||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~-~~~~fD~Vl~D  325 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS-PEEQPDAILLD  325 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-cCCCCCEEEEc
Confidence            46789999999999998888763  3469999999999999999999988874  7999999998765 45789999962


Q ss_pred             ------ccccCcc----------------cHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          202 ------LVLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       202 ------~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                            ..+..-+                ....++.++.+.|||||++++.+....
T Consensus       326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                  1111111                123589999999999999999886554

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.28  E-value=1.9e-11  Score=102.52  Aligned_cols=122  Identities=18%  Similarity=0.272  Sum_probs=93.0

Q ss_pred             HHHHHHH-HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCC----CEEEEeccc
Q 022248          111 VAGYKSQ-LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVG  185 (300)
Q Consensus       111 ~~~~~~~-~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~d~  185 (300)
                      +..|+.. +++....++..++|+|||-|.-++.+-+..-..++|+||++.-+++|+++.+...-..+    .+.|+++|.
T Consensus       102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc  181 (389)
T KOG1975|consen  102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC  181 (389)
T ss_pred             hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence            3344433 45555578889999999999877777655566899999999999999998875432212    478899987


Q ss_pred             Cc------CCCCCCcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          186 EA------IPVSDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       186 ~~------~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..      +++++.+||+|-|-+++|+.    ...+-++.++.+.|+|||++|-..+
T Consensus       182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            43      35566679999999999976    2345689999999999999988653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.27  E-value=1.7e-10  Score=96.25  Aligned_cols=127  Identities=21%  Similarity=0.242  Sum_probs=99.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---CCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v  198 (300)
                      .++.+|||.|.|+|.++..|++  .+..+|+..|..++..+.|+++++..++. +++++...|+....|.   +..+|.|
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecccccccccCcccEE
Confidence            6899999999999999999987  46679999999999999999999999985 6899999999654442   3679999


Q ss_pred             EEcccccCcccHHHHHHHHHHcc-cCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVL-KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      +..     ++++..++..+.+.| ||||++.+..++...      .                   ....+.|++.||..+
T Consensus       118 fLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ------v-------------------~~~~~~L~~~gf~~i  167 (247)
T PF08704_consen  118 FLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ------V-------------------QKTVEALREHGFTDI  167 (247)
T ss_dssp             EEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH------H-------------------HHHHHHHHHTTEEEE
T ss_pred             EEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH------H-------------------HHHHHHHHHCCCeee
Confidence            974     488888999999999 899999997753211      0                   155677888999987


Q ss_pred             EEee
Q 022248          278 ELGN  281 (300)
Q Consensus       278 ~~~~  281 (300)
                      ++.+
T Consensus       168 ~~~E  171 (247)
T PF08704_consen  168 ETVE  171 (247)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=5.1e-11  Score=108.28  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=88.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+.+++..  ...+++++|+++.+++.++++++..++.  ++.++.+|+..++ +.++.||.|++
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhhhhhhhhccCCEEEE
Confidence            46789999999999999988874  3579999999999999999999998874  6899999988775 44678999996


Q ss_pred             cc------cccCcc----------------cHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 TL------VLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .-      ++..-+                ...+++.++.+.|||||.+++++....
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            31      222112                124578999999999999999886543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.27  E-value=2.6e-10  Score=99.79  Aligned_cols=137  Identities=14%  Similarity=0.115  Sum_probs=96.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++++..++  ++++|+++|+.++.. ..+.||+|++.--
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP  249 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDSTQFATAQGEVPDLVLVNPP  249 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence            4689999999999999999874 57999999999999999999998887  489999999977532 3357999998621


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      -   ......+.+....++|++.+++++.....                         .+++..+   .||++.++.-.+
T Consensus       250 r---~G~~~~~~~~l~~~~~~~ivyvsc~p~t~-------------------------~rd~~~l---~~y~~~~~~~~D  298 (315)
T PRK03522        250 R---RGIGKELCDYLSQMAPRFILYSSCNAQTM-------------------------AKDLAHL---PGYRIERVQLFD  298 (315)
T ss_pred             C---CCccHHHHHHHHHcCCCeEEEEECCcccc-------------------------hhHHhhc---cCcEEEEEEEec
Confidence            1   11112233334446788877776632211                         0133332   589887777665


Q ss_pred             cCCcccccceeeEEe
Q 022248          284 LSNASLISPHVYGIA  298 (300)
Q Consensus       284 ~~~~~~~~~~~~~~~  298 (300)
                      +   |+.|+|+.-++
T Consensus       299 m---FP~T~HvE~v~  310 (315)
T PRK03522        299 M---FPHTAHYEVLT  310 (315)
T ss_pred             c---CCCCCeEEEEE
Confidence            5   66788876544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.27  E-value=6.8e-11  Score=100.80  Aligned_cols=109  Identities=15%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|..+..+++.  ....++++|+++.+++.++++++..++.  ++.++..|+..++...+.||.|++.
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhhhccCCCEEEEc
Confidence            46789999999999999988773  2358999999999999999999998874  7999999987766555679999963


Q ss_pred             c------cccCcc----------------cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 L------VLCSVK----------------DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      -      ++..-+                ....+|+++.+.|||||+|+.++...
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            1      111111                12458999999999999999987544

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=9.8e-11  Score=106.62  Aligned_cols=108  Identities=17%  Similarity=0.205  Sum_probs=84.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+..+++.. +..++++|+++.+++.++++++..++   ++.++++|+..++  +..++||.|++
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCEEEE
Confidence            467899999999999999998743 36999999999999999999988876   3688999987754  34578999995


Q ss_pred             cc------cccCcc---------c-------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          201 TL------VLCSVK---------D-------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~------~l~~~~---------~-------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .-      ++..-+         +       ...++.++.++|||||++++++...
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            32      111101         1       2368999999999999999987543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.25  E-value=1.8e-11  Score=98.18  Aligned_cols=143  Identities=19%  Similarity=0.238  Sum_probs=106.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~  201 (300)
                      .++.+|||.+.|-|+.++..++....+|+-++.++..++.|+-+-...++....+.++.+|+.++  .|+|++||+|+-.
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence            46899999999999999998877666999999999999999877555555445789999999775  5889999999931


Q ss_pred             ---ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          202 ---LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       202 ---~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                         +++-.----+++.+|++|+|||||.++-..-++...                  ..+.-.+..+.+.|+++||++|.
T Consensus       213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r------------------yrG~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR------------------YRGLDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc------------------cccCChhHHHHHHHHhcCceeee
Confidence               111110012568899999999999999876443321                  01122345889999999999887


Q ss_pred             Eeeecc
Q 022248          279 LGNAFL  284 (300)
Q Consensus       279 ~~~~~~  284 (300)
                      .....+
T Consensus       275 ~~~~~~  280 (287)
T COG2521         275 KVREAL  280 (287)
T ss_pred             eehhcc
Confidence            765543

>PLN02366 spermidine synthase

Probab=99.24  E-value=3.8e-10  Score=97.60  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=83.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI--PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~--~~~~~~~D~v  198 (300)
                      +.+++||+||||.|.++..+++.+. .+++.+|+++.+++.+++.+...  ++..++++++.+|+...  ..+++.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4678999999999999999988654 58999999999999999987643  34446899999997543  1235689999


Q ss_pred             EEcccccCccc----HHHHHHHHHHcccCCcEEEEE
Q 022248          199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      ++...-...+.    ...+++.+++.|+|||++++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            98543322221    246799999999999998763

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.23  E-value=1e-10  Score=93.10  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...    ++++++.+|+.++++++..||.|+++.-
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d~vi~n~P   86 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPYKVVGNLP   86 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCCEEEECCC
Confidence            45679999999999999999976 679999999999999999887431    4899999999999887777999988643


Q ss_pred             ccCcccHHHHHHHHHHc--ccCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRV--LKPGGIYLF  229 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~--LkpgG~l~~  229 (300)
                       +++.  ...+..+.+.  +.++|.+++
T Consensus        87 -y~~~--~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       87 -YNIS--TPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             -cccH--HHHHHHHHhcCCCcceEEEEE
Confidence             3332  2334444433  346666665

>TIGR00417 speE spermidine synthase

Probab=99.22  E-value=3.4e-10  Score=96.88  Aligned_cols=108  Identities=15%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+  +..++++++.+|.... ...+++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            345699999999999998888754 5689999999999999999875432  2235788888887542 22247899999


Q ss_pred             EcccccCcc--c--HHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVK--D--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +......-+  +  ...+++.+.++|+|||++++..
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            865422211  2  3578899999999999999864

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=1.6e-10  Score=96.64  Aligned_cols=165  Identities=18%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---------------C-----------CC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---------------L-----------TN  177 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~---------------~-----------~~  177 (300)
                      .++.++||||||.-.+-..-+.....+++..|.++..++..++.++..+.-               .           ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            456799999999976643334345568999999999999888876543210               0           01


Q ss_pred             E-EEEecccCcC-CCCC-----CcccEEEEcccccCc-cc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH
Q 022248          178 F-KFLQAVGEAI-PVSD-----ASVDAVVGTLVLCSV-KD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN  246 (300)
Q Consensus       178 ~-~~~~~d~~~~-~~~~-----~~~D~v~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  246 (300)
                      | .++.+|+.+. |+..     .+||+|++.++++.. +|   ....++++.++|||||.|++........         
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~---------  205 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY---------  205 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE---------
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee---------
Confidence            2 2566677553 2322     359999999999876 34   4578999999999999999988543220         


Q ss_pred             hhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCcccccceeeEEecC
Q 022248          247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIAHK  300 (300)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~k  300 (300)
                       +.-....+..-..+.+.+++.|+++||.+++.+.  -....--.-.++.+|+|
T Consensus       206 -Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~--~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  206 -YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK--QSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             -EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG---TTTB---EEEEEEEEE
T ss_pred             -EEECCEecccccCCHHHHHHHHHHcCCEEEeccc--ccCcCCCCcEEEEEEeC
Confidence             1111111223345678999999999999988884  11222233456667766

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.21  E-value=2.5e-10  Score=93.05  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~  189 (300)
                      .++..++...  +.++||||||++|+.+..+++.  .+.+++.+|.++...+.|++.++..++. ++++++.+|+.+. +
T Consensus        35 ~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l~  111 (205)
T PF01596_consen   35 QLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVLP  111 (205)
T ss_dssp             HHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHHH
T ss_pred             HHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhHH
Confidence            3444444333  6789999999999999999973  4679999999999999999999999986 6999999998652 2


Q ss_pred             -----CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          190 -----VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       190 -----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                           .+.++||+|+....-   .+....+..+.++|+|||.+++-+
T Consensus       112 ~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  112 ELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             HHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             HHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence                 124689999986532   356678889999999999998855

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=1.3e-10  Score=93.84  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             CCCeEEEECCCCCh--hHHH--hHh---C---CCceEEEEcCCHHHHHHHHHHH--------------HH-----c--CC
Q 022248          125 KAKKVLEIGIGTGP--NLKY--YAA---D---TDVQVLGVDPNRKMEKYAQTAA--------------VA-----A--GL  173 (300)
Q Consensus       125 ~~~~vLDiGcG~G~--~~~~--l~~---~---~~~~~~giD~s~~~~~~a~~~~--------------~~-----~--~~  173 (300)
                      +..+|+.+||++|.  ++++  +.+   .   ...+++|+|+|+.+++.|++-.              +.     .  ..
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56799999999994  2222  233   1   2479999999999999998811              00     0  00


Q ss_pred             C-----CCCEEEEecccCcCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248          174 P-----LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       174 ~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .     ..+|.|...|+.+.+...+.||+|+|.+++.++...  ..+++.+++.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            0     147999999998844456899999999999999654  678999999999999999954

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=2.4e-10  Score=104.67  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=85.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.++++++..++.  ++.++.+|+..++  ++ +.||+|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~-~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHEKFA-EKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccchhc-ccCCEEE
Confidence            46689999999999999999874  3579999999999999999999988874  6999999997753  33 7899999


Q ss_pred             Eccc------ccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          200 GTLV------LCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       200 ~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +.--      +.+-++                ...++.++.++|||||.++.++...
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            7421      111111                1357999999999999999876433

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.19  E-value=2.1e-10  Score=98.06  Aligned_cols=105  Identities=24%  Similarity=0.281  Sum_probs=85.6

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..+++.|||+|||+|.++...++....+|+++|.|.- ++.|.+.+..+++. +.++++.+.++++.+|.+.+|+|++-|
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~~iv~~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEW  135 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFARKIVKDNGLE-DVITVIKGKVEDIELPVEKVDIIVSEW  135 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHHHHHHhcCcc-ceEEEeecceEEEecCccceeEEeehh
Confidence            3578999999999999999988877789999998764 59999999999986 579999999998876678999999865


Q ss_pred             cccCc--c-cHHHHHHHHHHcccCCcEEEE
Q 022248          203 VLCSV--K-DVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       203 ~l~~~--~-~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .=+.+  + -.+.++-.=-++|+|||.++=
T Consensus       136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            44433  2 234566667789999998763

>PLN02476 O-methyltransferase

Probab=99.18  E-value=5.6e-10  Score=94.54  Aligned_cols=103  Identities=13%  Similarity=0.135  Sum_probs=85.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C----CCCccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V----SDASVD  196 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~----~~~~~D  196 (300)
                      ++++|||||+++|+.+..++..  .+.+++.+|.+++..+.|++.++..|+. ++++++.+|+.+. + +    ..++||
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            6789999999999999999873  3568999999999999999999999986 6899999998552 2 1    246899


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|+...--   .+...+++.+.++|+|||.+++-+
T Consensus       197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEec
Confidence            99986421   345678899999999999988744

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.17  E-value=1.1e-09  Score=100.16  Aligned_cols=136  Identities=18%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++++..++  .+++|+.+|+.+.    ++.++.||+|+
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI--ANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            35579999999999999999864 45899999999999999999988886  4899999998653    23456799999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      +.--=.  .-...+++.+.+ ++|++.++++.. +   ..+.+                     ++ +.|.+.||++..+
T Consensus       368 ~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~-p---~tlar---------------------d~-~~l~~~gy~~~~~  418 (431)
T TIGR00479       368 LDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN-P---ATLAR---------------------DL-EFLCKEGYGITWV  418 (431)
T ss_pred             ECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC-H---HHHHH---------------------HH-HHHHHCCeeEEEE
Confidence            742111  112445565554 889988777652 1   11110                     22 3456789987777


Q ss_pred             eeeccCCccccccee
Q 022248          280 GNAFLSNASLISPHV  294 (300)
Q Consensus       280 ~~~~~~~~~~~~~~~  294 (300)
                      .-.+|   |+.|+|+
T Consensus       419 ~~~Dm---FP~T~Hv  430 (431)
T TIGR00479       419 QPVDM---FPHTAHV  430 (431)
T ss_pred             EEecc---CCCCCCC
Confidence            66655   4555554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.17  E-value=4.8e-10  Score=94.66  Aligned_cols=135  Identities=22%  Similarity=0.361  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHh--hhhHhHHHHHHHHHHHHHHhh-cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248           90 DWYEEFYASVMN--SSMKSYEAEVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (300)
Q Consensus        90 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~  166 (300)
                      ..|-.+|+....  ..+.+|.+.- .+.+.+++.. ...++.|||+|||+|.++...+.....+|++|+.| +|.++|++
T Consensus       140 ~~YF~~YG~L~~QQNMmQDYVRTg-TY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~  217 (517)
T KOG1500|consen  140 SQYFQFYGYLSQQQNMMQDYVRTG-TYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARK  217 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHH
Confidence            345556654432  2335565532 2333444333 36789999999999999988887777899999974 59999999


Q ss_pred             HHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc---cccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          167 AAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL---VLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       167 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .++.+.+. +++.++.+.++++.++ +..|+||+--   .|.+ +...+..-..++.|||+|.++=
T Consensus       218 Lv~~N~~~-~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  218 LVASNNLA-DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             HHhcCCcc-ceEEEccCccccccCc-hhccEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence            99988775 7999999999998776 7799999732   2222 3334455567799999998864

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.16  E-value=8.7e-10  Score=90.91  Aligned_cols=149  Identities=21%  Similarity=0.261  Sum_probs=108.0

Q ss_pred             CeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCCCcccEEEEcc
Q 022248          127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAVVGTL  202 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~  202 (300)
                      ..+||||||.|.++..+|. .+...++|||+....+..|.+++.+.++.  |+.+++.|+..+   -+++++.|-|..++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            5899999999999999997 68889999999999999999999999985  999999999764   24556999999877


Q ss_pred             cccCcccH--------HHHHHHHHHcccCCcEEEEEecccCCCchHHHH-HHHhhhh---hhh-hh--c-----CCcccc
Q 022248          203 VLCSVKDV--------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF-WQNVVDP---LQQ-IV--S-----DGCHLT  262 (300)
Q Consensus       203 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~-~~--~-----~~~~~~  262 (300)
                      ---|....        ..+++.+.++|+|||.|.+.+-    ......+ +......   ... ..  +     ......
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD----~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD----NEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPV  203 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec----CHHHHHHHHHHHHhcchhhhccccccccccccccCCCC
Confidence            54443221        4689999999999999999772    2233333 2222211   000 00  0     011233


Q ss_pred             hHHHHHHHhcCCcEEEEee
Q 022248          263 RQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~  281 (300)
                      .++++.....|..+..+..
T Consensus       204 T~yE~k~~~~g~~i~~l~~  222 (227)
T COG0220         204 TEYEQKFRRLGHPVYDLEF  222 (227)
T ss_pred             cHHHHHHHhCCCceEEEEE
Confidence            5778888888888766654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.15  E-value=6.8e-10  Score=90.12  Aligned_cols=105  Identities=8%  Similarity=-0.011  Sum_probs=77.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..++.....+++++|.++.+++.++++++..++.  ++.++.+|+... +...+.||+|++.=-
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            56799999999999998655445579999999999999999999888863  799999998653 223457999998543


Q ss_pred             ccCcccHHHHHHHHHH--cccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRR--VLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~  232 (300)
                      .. -.-...+++.+..  +|+|+|.+++...
T Consensus       131 y~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        131 FR-KGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             CC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            11 1112344455544  3789988887653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.15  E-value=3.1e-09  Score=95.06  Aligned_cols=137  Identities=14%  Similarity=0.069  Sum_probs=97.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++++..++.  +++|+.+|+++.. ...+.||+|++.=-
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi~DPP  309 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD--NLSFAALDSAKFATAQMSAPELVLVNPP  309 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence            4579999999999999999864 579999999999999999999988874  8999999987642 12246999987521


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                       . -.-...+++.+. .++|++.++++....    ++.                     +++..+   .||++.++.-.+
T Consensus       310 -r-~G~~~~~l~~l~-~~~p~~ivyvsc~p~----Tla---------------------RDl~~L---~gy~l~~~~~~D  358 (374)
T TIGR02085       310 -R-RGIGKELCDYLS-QMAPKFILYSSCNAQ----TMA---------------------KDIAEL---SGYQIERVQLFD  358 (374)
T ss_pred             -C-CCCcHHHHHHHH-hcCCCeEEEEEeCHH----HHH---------------------HHHHHh---cCceEEEEEEec
Confidence             1 011133445554 479999888877211    111                     144433   699987777665


Q ss_pred             cCCcccccceeeEEe
Q 022248          284 LSNASLISPHVYGIA  298 (300)
Q Consensus       284 ~~~~~~~~~~~~~~~  298 (300)
                      |   |+.|+|+.-++
T Consensus       359 m---FPqT~HvE~v~  370 (374)
T TIGR02085       359 M---FPHTSHYEVLT  370 (374)
T ss_pred             c---CCCCCcEEEEE
Confidence            5   66788876554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.14  E-value=6.9e-10  Score=90.40  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcC-
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI-  188 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~-  188 (300)
                      .++..++..  .++++|||||.+.|+.+..++.. + +.+++.+|.++++.+.|++++++.|+. +++..+. +|+.+. 
T Consensus        49 ~~L~~L~~~--~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~l  125 (219)
T COG4122          49 ALLRLLARL--SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDVL  125 (219)
T ss_pred             HHHHHHHHh--cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHHH
Confidence            344444433  37789999999999999999873 2 579999999999999999999999997 5688888 476442 


Q ss_pred             C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          189 P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       189 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      . ...++||+|+.-..-   .+...+++.+.++|+|||.+++-+.
T Consensus       126 ~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         126 SRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             HhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence            2 456899999975422   3456789999999999999988553

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=7.7e-10  Score=87.62  Aligned_cols=109  Identities=21%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             HHHHhhcCCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcC--------CCCCCEEEEeccc
Q 022248          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVG  185 (300)
Q Consensus       117 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~--------~~~~~~~~~~~d~  185 (300)
                      +.++.+..++.+.||+|+|+|+++..++.   ..+...+|||.-++.++.+++++...-        +...++.++++|.
T Consensus        74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg  153 (237)
T KOG1661|consen   74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG  153 (237)
T ss_pred             HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence            33443446899999999999999988775   345556999999999999999886432        4456888999999


Q ss_pred             CcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       186 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ...--+..+||.|.+......+      .+++...|+|||.+++.-
T Consensus       154 r~g~~e~a~YDaIhvGAaa~~~------pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  154 RKGYAEQAPYDAIHVGAAASEL------PQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cccCCccCCcceEEEccCcccc------HHHHHHhhccCCeEEEee
Confidence            8877678999999998554433      488999999999999954

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.11  E-value=3.2e-09  Score=94.04  Aligned_cols=118  Identities=19%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             HHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCC
Q 022248          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSD  192 (300)
Q Consensus       117 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~  192 (300)
                      ..+.... .+++|||+-|=||.++.+.+.....+++.||+|..+++.|+++++-+++...++.|+++|+.+.    .-..
T Consensus       210 ~~l~~~~-~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g  288 (393)
T COG1092         210 RALGELA-AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG  288 (393)
T ss_pred             HHHhhhc-cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcC
Confidence            3444444 3899999999999999998865445999999999999999999999999877899999999653    2344


Q ss_pred             CcccEEEEc---------ccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          193 ASVDAVVGT---------LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       193 ~~~D~v~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .+||+|++.         ....-..+...++..+.++|+|||.++++.....
T Consensus       289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            699999972         1111124567789999999999999999886543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.11  E-value=1.3e-09  Score=86.83  Aligned_cols=111  Identities=22%  Similarity=0.190  Sum_probs=76.5

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC-CCCCCEEEEecccCc-C---CCCCCccc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEA-I---PVSDASVD  196 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~-~---~~~~~~~D  196 (300)
                      ..++.+|||+|||+|..+..++.. ...+|+..|..+ .++.++.+++.++ ....++.+...+..+ .   ......||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            357889999999999999988875 577999999998 9999999988765 112567777777643 1   12446899


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|++..+++.-.....+++-+.++|+|+|.+++....+
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999999988888899999999999999877766444

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.11  E-value=1.8e-09  Score=98.07  Aligned_cols=101  Identities=25%  Similarity=0.346  Sum_probs=75.6

Q ss_pred             CCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      +..|||||||+|.+....++.     ...+|++||-++.++..++++++..++. ++|+++.+|++++..+ +.+|+||+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~lp-ekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMREVELP-EKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccCCCCC-CceeEEEE
Confidence            578999999999998666543     3579999999999998888887888886 6899999999998765 58999997


Q ss_pred             ccc--ccCcccHHHHHHHHHHcccCCcEEE
Q 022248          201 TLV--LCSVKDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       201 ~~~--l~~~~~~~~~l~~~~~~LkpgG~l~  228 (300)
                      =..  +-.-+-..++|....|.|||||.++
T Consensus       265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  265 ELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            222  1111234567888999999998775

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02672 methionine S-methyltransferase

Probab=99.11  E-value=1.6e-09  Score=106.72  Aligned_cols=106  Identities=25%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             CCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC--------------CCCEEEEecccCcCCC
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP--------------LTNFKFLQAVGEAIPV  190 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~--------------~~~~~~~~~d~~~~~~  190 (300)
                      +.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++++.+++.              .++++|+.+|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999999874 4579999999999999999999875431              1479999999865431


Q ss_pred             C-CCcccEEEEcc--------------cccC------------c--------cc----HHHHHHHHHHcccCCcEEEEEe
Q 022248          191 S-DASVDAVVGTL--------------VLCS------------V--------KD----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       191 ~-~~~~D~v~~~~--------------~l~~------------~--------~~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      . ...||+|+++=              +..+            .        .|    ...++.+..++|+|||.+++-.
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 23699999841              1100            0        11    1467788888999999888643

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=5.8e-09  Score=85.96  Aligned_cols=120  Identities=18%  Similarity=0.287  Sum_probs=86.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-----CCCCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-----IPVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~D~  197 (300)
                      ..+..|||+|||+|..+..++. -+...+++||.|+.++..|.++++..++. ..+.++.-+++.     .+...+.+|+
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIMESDASDEHPLLEGKIDL  225 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccccccccccccccCceeE
Confidence            3456899999999999998886 35789999999999999999999998885 577777544432     2456789999


Q ss_pred             EEEcc--cc------------------------cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH
Q 022248          198 VVGTL--VL------------------------CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW  244 (300)
Q Consensus       198 v~~~~--~l------------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  244 (300)
                      ++++=  +.                        ........++.-..|.|+|||.+.+..........+...|
T Consensus       226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~  298 (328)
T KOG2904|consen  226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW  298 (328)
T ss_pred             EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence            99852  10                        0001123456778899999999998765444444444443

>PHA03412 putative methyltransferase; Provisional

Probab=99.08  E-value=5.8e-10  Score=91.49  Aligned_cols=94  Identities=11%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .+.+|||+|||+|.++..+++.    ...+++++|+++.+++.|+++.       .++.++.+|+...++ +++||+|++
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIs  120 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAIS  120 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEE
Confidence            4679999999999999988763    3568999999999999999774       367899999977664 468999998


Q ss_pred             cccccCc--c----------cHHHHHHHHHHcccCCcE
Q 022248          201 TLVLCSV--K----------DVDMTLQEVRRVLKPGGI  226 (300)
Q Consensus       201 ~~~l~~~--~----------~~~~~l~~~~~~LkpgG~  226 (300)
                      +=-....  .          -...++..+.+++++|+.
T Consensus       121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            5322211  1          134578888886666664

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.07  E-value=3.7e-09  Score=91.00  Aligned_cols=130  Identities=23%  Similarity=0.307  Sum_probs=102.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++..|||--||||.++.... ..+..++|+|++..|++-|+.+++..++.  ...+... |+..+|++++++|.|++.-
T Consensus       196 ~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCCCCCccceEEecC
Confidence            577899999999999988865 57889999999999999999999998864  5655655 9999999988999999731


Q ss_pred             -----cccCccc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          203 -----VLCSVKD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       203 -----~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                           .-.....    ..++++.+.++||+||++++..+.                              .....+.+.|
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~------------------------------~~~~~~~~~~  322 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR------------------------------DPRHELEELG  322 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC------------------------------cchhhHhhcC
Confidence                 1001111    357899999999999999997640                              2234566899


Q ss_pred             CcEEEEeeeccCC
Q 022248          274 FSSVELGNAFLSN  286 (300)
Q Consensus       274 f~~v~~~~~~~~~  286 (300)
                      |+++.....+.+.
T Consensus       323 f~v~~~~~~~~H~  335 (347)
T COG1041         323 FKVLGRFTMRVHG  335 (347)
T ss_pred             ceEEEEEEEeecC
Confidence            9998888777664

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.07  E-value=3e-09  Score=89.63  Aligned_cols=107  Identities=18%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             CCCeEEEECCCCCh--hHHH--hHhC------CCceEEEEcCCHHHHHHHHHHHHH-----cCCC---------------
Q 022248          125 KAKKVLEIGIGTGP--NLKY--YAAD------TDVQVLGVDPNRKMEKYAQTAAVA-----AGLP---------------  174 (300)
Q Consensus       125 ~~~~vLDiGcG~G~--~~~~--l~~~------~~~~~~giD~s~~~~~~a~~~~~~-----~~~~---------------  174 (300)
                      ...+|+-+||++|.  ++++  +.+.      ...+++|+|++..+++.|++-.=.     .+++               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            46799999999994  3333  3332      257999999999999999872210     1111               


Q ss_pred             -------CCCEEEEecccCcCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248          175 -------LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       175 -------~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  231 (300)
                             ...|.|...|+...++..+.||+|+|.+|+.++...  ..++..++..|+|||+|++-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                   136778888887665345789999999999999644  678999999999999999944

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.06  E-value=8e-10  Score=94.34  Aligned_cols=107  Identities=18%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             CCCeEEEECCCCCh--hHHHh--HhC-----CCceEEEEcCCHHHHHHHHHHH------------------HH-----cC
Q 022248          125 KAKKVLEIGIGTGP--NLKYY--AAD-----TDVQVLGVDPNRKMEKYAQTAA------------------VA-----AG  172 (300)
Q Consensus       125 ~~~~vLDiGcG~G~--~~~~l--~~~-----~~~~~~giD~s~~~~~~a~~~~------------------~~-----~~  172 (300)
                      +..+|+..||++|.  +++++  .+.     ...+++|+|+|+.+++.|++..                  ..     .+
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34799999999994  33333  231     2468999999999999999841                  00     00


Q ss_pred             ---CC---CCCEEEEecccCcCCCC-CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248          173 ---LP---LTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       173 ---~~---~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         +.   ...|.|...|+.+.+++ .+.||+|+|.+++.|+.  ....+++++++.|+|||+|++-.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence               00   14678889998775443 57899999999999995  45789999999999999887743

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.05  E-value=2.6e-09  Score=89.39  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~  189 (300)
                      .++..++...  +.++|||||+++|+.+..++..  .+.+++.+|.++...+.|++.++..|+. ++++++.+++.+. +
T Consensus        69 ~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~  145 (247)
T PLN02589         69 QFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLD  145 (247)
T ss_pred             HHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH
Confidence            3444444333  6789999999999999999863  4679999999999999999999999986 7999999998553 2


Q ss_pred             C------CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          190 V------SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       190 ~------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -      ..++||+|+...--   ......++.+.+.|+|||.+++-+
T Consensus       146 ~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        146 QMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence            1      13689999986431   234567888899999999987743

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=99.02  E-value=1.2e-09  Score=96.18  Aligned_cols=206  Identities=20%  Similarity=0.232  Sum_probs=134.1

Q ss_pred             CChHHHHhhcCCCCchhHHHHHHHHHhhhh-HhHHHHHHHHH----HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCc
Q 022248           75 SDSMAMLNRLHPPRPDWYEEFYASVMNSSM-KSYEAEVAGYK----SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV  149 (300)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~  149 (300)
                      .+..+.+..+.....+.|...|...+.-.. ..+......+.    -.++..-..++..++|+|||.|....+++.....
T Consensus        55 ~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~  134 (364)
T KOG1269|consen   55 EDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKA  134 (364)
T ss_pred             cccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccC
Confidence            444555666555555555555554432221 11111111111    1122222246668999999999999999988888


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       150 ~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .++|+|.++..+.++.......++. .+..+..+|+...|++++.||.+.+..+.+|.++...+++|+.|+++|||+++.
T Consensus       135 ~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  135 GVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             CccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence            9999999999999998888777775 355568889999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCchHHH-HHHHhhhhhhhhhcC-CcccchHHHHHHHhcCCcEEEEee
Q 022248          230 VEHVAAKDGTFLK-FWQNVVDPLQQIVSD-GCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      .++.......-.. ........+....+. .........+++...||+.+..+.
T Consensus       214 ~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~  267 (364)
T KOG1269|consen  214 KEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEK  267 (364)
T ss_pred             HHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcc
Confidence            8765432110000 000000000000000 011223567788889998777553

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=7.2e-09  Score=81.21  Aligned_cols=72  Identities=25%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      -.+..|+|+|||||.++...+-.....|+++|+++++++.++++..+..   .++.|+++|+.+..   ..+|.++++
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtvimN  115 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTVIMN  115 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceEEEC
Confidence            3677899999999999988876666799999999999999999998833   58999999998875   568888874

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.98  E-value=4.5e-09  Score=89.54  Aligned_cols=110  Identities=25%  Similarity=0.307  Sum_probs=82.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~~~  201 (300)
                      ++++|||+-|=+|.++.+.+.....+++.||.|..+++.+++++.-+++...+++|+..|+.+. .  -..++||+||+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            6789999999999999988765556899999999999999999999998777999999998652 1  134689999972


Q ss_pred             ---ccccC---cccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 ---LVLCS---VKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ---~~l~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                         +.-..   ..+...++..+.++|+|||.|+++....
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence               11111   1355678899999999999998877544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.97  E-value=5.2e-08  Score=82.08  Aligned_cols=145  Identities=17%  Similarity=0.118  Sum_probs=102.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH---cC-------------------------C---
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA---AG-------------------------L---  173 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~---~~-------------------------~---  173 (300)
                      ...+||--|||-|+++..++.. +..+.|.|.|--|+-...-.+..   .+                         +   
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            4679999999999999999975 77999999999987655443221   00                         0   


Q ss_pred             -------CCCCEEEEecccCcCCCCC---CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248          174 -------PLTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF  243 (300)
Q Consensus       174 -------~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  243 (300)
                             ...++....+|+.++-..+   +.||+|+..+-+...++....++.|.++|||||+.+=..+......     
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~-----  209 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFE-----  209 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCC-----
Confidence                   0125666777776654344   7999999999888889999999999999999996665543221100     


Q ss_pred             HHHhhhhhh-hhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          244 WQNVVDPLQ-QIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                            +.. .....--.+.+|+..+++..||+++..+.
T Consensus       210 ------~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  210 ------PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             ------CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                  000 00000234668999999999999877654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.97  E-value=1.6e-08  Score=81.66  Aligned_cols=105  Identities=8%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C-CCC-cccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-SDA-SVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~~D~v~~  200 (300)
                      ++.+|||++||+|.++..++.+....++++|.++.+++.++++++..++. .+++++.+|+... . + ..+ .||+|+.
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            57899999999999999998876668999999999999999999888864 4789999998542 2 1 123 3677665


Q ss_pred             cccccCcccHHHHHHHHH--HcccCCcEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVR--RVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~  231 (300)
                      . -.+.......++..+.  .+|+++|.+++-.
T Consensus       128 D-PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       128 D-PPFFNGALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             C-cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            2 2221122334444443  4678888766644

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.96  E-value=1.3e-08  Score=90.65  Aligned_cols=135  Identities=15%  Similarity=0.045  Sum_probs=91.9

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CC------------
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS------------  191 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~------------  191 (300)
                      +.+|||++||+|.++..+++. ..+++|+|+++.+++.|+++++..++.  +++|+.+|+.+. + +.            
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID--NVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhccccccccccc
Confidence            357999999999999988865 458999999999999999999988874  899999998663 1 10            


Q ss_pred             --CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          192 --DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       192 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                        ...||+|+..=- . ..-...+++.+.   +|++.++++...    .++   .                  .++..+.
T Consensus       284 ~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~p----~tl---a------------------rDl~~L~  333 (362)
T PRK05031        284 LKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCNP----ETL---C------------------ENLETLS  333 (362)
T ss_pred             ccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeCH----HHH---H------------------HHHHHHc
Confidence              125899987311 1 001123344443   478887777632    111   1                  1444433


Q ss_pred             HhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          270 SEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       270 ~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                       + ||++.++.-.+|   |+.|+|+.-++
T Consensus       334 -~-gY~l~~v~~~Dm---FPqT~HvE~v~  357 (362)
T PRK05031        334 -Q-THKVERFALFDQ---FPYTHHMECGV  357 (362)
T ss_pred             -C-CcEEEEEEEccc---CCCCCcEEEEE
Confidence             3 898777776655   67788876554

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.96  E-value=3.9e-09  Score=90.55  Aligned_cols=150  Identities=17%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  205 (300)
                      -...+|+|.|.|..+..+.. ...++-+++.....+-.++..+. .     .|+.+.+|..+- .|  .-|+|++-+++|
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~-~P--~~daI~mkWiLh  247 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD-TP--KGDAIWMKWILH  247 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc-CC--CcCeEEEEeecc
Confidence            47899999999999999987 44468888888877777766653 2     367777777554 33  345999999999


Q ss_pred             CcccH--HHHHHHHHHcccCCcEEEEEecccCCCchH----HHHHHHh-hhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          206 SVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTF----LKFWQNV-VDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       206 ~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      |+.|.  .++|++|+..|+|||.+++.+.+.+.....    ..+.... ...+.....+.-.+..+++.++.++||...+
T Consensus       248 dwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~  327 (342)
T KOG3178|consen  248 DWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCM  327 (342)
T ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeE
Confidence            99765  589999999999999999999854431111    0111000 0011111223456778999999999999888


Q ss_pred             EeeeccC
Q 022248          279 LGNAFLS  285 (300)
Q Consensus       279 ~~~~~~~  285 (300)
                      +......
T Consensus       328 ~~~~~~~  334 (342)
T KOG3178|consen  328 VALTAYS  334 (342)
T ss_pred             EEeccCc
Confidence            8755443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.95  E-value=1.3e-08  Score=94.30  Aligned_cols=106  Identities=23%  Similarity=0.260  Sum_probs=88.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~  200 (300)
                      .....+||||||.|.++..+|. .+...++|+|+....+..+.+++...++.  |+.++..|+..+  -++++++|.|+.
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHhcCcccccEEEE
Confidence            3567899999999999999987 68889999999999999999888888874  898888887543  267889999999


Q ss_pred             cccccCcccH--------HHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++---|....        ..+++.++++|||||.+.+.+
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            7755443211        468999999999999999976

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.94  E-value=9e-09  Score=82.75  Aligned_cols=119  Identities=21%  Similarity=0.247  Sum_probs=89.9

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---CCCcccEEEEcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVGTL  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~  202 (300)
                      ..++|||||=+......  ...-..|+.||+++.                 .-.+.+.|+.+.|.   +++.||+|.++.
T Consensus        52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             cceEEeecccCCCCccc--ccCceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence            47999999975543322  234457999999873                 23457788877765   468999999999


Q ss_pred             cccCcccHH---HHHHHHHHcccCCcE-----EEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          203 VLCSVKDVD---MTLQEVRRVLKPGGI-----YLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       203 ~l~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      +|.++|++.   +++.++++.|+|+|.     |+++-+.+--                  ....+.+.+.|.++|+..||
T Consensus       113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv------------------~NSRy~~~~~l~~im~~LGf  174 (219)
T PF11968_consen  113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV------------------TNSRYMTEERLREIMESLGF  174 (219)
T ss_pred             EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh------------------hcccccCHHHHHHHHHhCCc
Confidence            999999875   589999999999999     8887643311                  11235566789999999999


Q ss_pred             cEEEEee
Q 022248          275 SSVELGN  281 (300)
Q Consensus       275 ~~v~~~~  281 (300)
                      ..++.+.
T Consensus       175 ~~~~~~~  181 (219)
T PF11968_consen  175 TRVKYKK  181 (219)
T ss_pred             EEEEEEe
Confidence            9988864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.94  E-value=3e-08  Score=86.00  Aligned_cols=152  Identities=16%  Similarity=0.167  Sum_probs=90.8

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEe-cccCcC----CCCCCcccE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQ-AVGEAI----PVSDASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~-~d~~~~----~~~~~~~D~  197 (300)
                      ...++||||||+|.....++. ..+.+++|+|+++.+++.|+++++.. ++. .++.+.. .+...+    ..+++.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCceEE
Confidence            468999999999966655554 46789999999999999999999988 675 5777754 333222    124678999


Q ss_pred             EEEcccccCcccH-----HHHHHH----------------HHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc
Q 022248          198 VVGTLVLCSVKDV-----DMTLQE----------------VRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS  256 (300)
Q Consensus       198 v~~~~~l~~~~~~-----~~~l~~----------------~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (300)
                      |+|+=-++.-...     ..-.+.                ..+++.+||.+-|+.....+.   .....+... +... -
T Consensus       193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~~gw-ftsm-v  267 (321)
T PRK11727        193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQVLW-FTSL-V  267 (321)
T ss_pred             EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhhCcE-EEEE-e
Confidence            9997433321111     111112                223345677766655322111   111111100 0000 0


Q ss_pred             CCcccchHHHHHHHhcCCcEEEEeee
Q 022248          257 DGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       257 ~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ....+.+.+.+.|++.|...+.+.++
T Consensus       268 ~kk~~l~~l~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        268 SKKENLPPLYRALKKVGAVEVKTIEM  293 (321)
T ss_pred             eccCCHHHHHHHHHHcCCceEEEEEE
Confidence            11235679999999999976666544

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.88  E-value=6.6e-08  Score=77.38  Aligned_cols=99  Identities=32%  Similarity=0.392  Sum_probs=82.1

Q ss_pred             CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ..+++|||+|.|.-+..++- .+..+++.+|....-+...+......++.  +++++.+.+++ +...+.||+|++..  
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~-~~~~~~fd~v~aRA--  123 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEE-PEYRESFDVVTARA--  123 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHH-TTTTT-EEEEEEES--
T ss_pred             CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecc-cccCCCccEEEeeh--
Confidence            33899999999998888765 57889999999999999999999999985  89999999998 44568999999954  


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                        +.....++.-+...|++||.+++.-
T Consensus       124 --v~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  124 --VAPLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence              4566778899999999999999865

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.88  E-value=9.3e-08  Score=84.87  Aligned_cols=135  Identities=13%  Similarity=-0.016  Sum_probs=90.2

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-------C---C---
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-------V---S---  191 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-------~---~---  191 (300)
                      +.+|||++||+|.++..+++.. .+++|+|+++.+++.|+++++..++.  ++.|+.+|+++. +       +   .   
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  274 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRLKGID  274 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccccccc
Confidence            3579999999999999988754 49999999999999999999988874  799999998763 1       1   0   


Q ss_pred             --CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          192 --DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       192 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                        ...||+|+..=- . ..-...+++.+   ++|++.+++++...    .+.                     .++..+.
T Consensus       275 ~~~~~~d~v~lDPP-R-~G~~~~~l~~l---~~~~~ivYvsC~p~----tla---------------------RDl~~L~  324 (353)
T TIGR02143       275 LKSYNCSTIFVDPP-R-AGLDPDTCKLV---QAYERILYISCNPE----TLK---------------------ANLEQLS  324 (353)
T ss_pred             cccCCCCEEEECCC-C-CCCcHHHHHHH---HcCCcEEEEEcCHH----HHH---------------------HHHHHHh
Confidence              123798887311 0 00112333444   34788888876311    111                     1444433


Q ss_pred             HhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          270 SEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       270 ~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                        .||++..+.-.+|   |+.|+|+.-++
T Consensus       325 --~~Y~l~~v~~~Dm---FP~T~HvE~v~  348 (353)
T TIGR02143       325 --ETHRVERFALFDQ---FPYTHHMECGV  348 (353)
T ss_pred             --cCcEEEEEEEccc---CCCCCcEEEEE
Confidence              3488777766555   67788876554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.87  E-value=1.4e-08  Score=86.37  Aligned_cols=73  Identities=19%  Similarity=0.334  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++..  .  ++++++.+|+.+++++  .||.|+++.-
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~~--~~d~Vv~NlP  100 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKVDLP--EFNKVVSNLP  100 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccCCch--hceEEEEcCC
Confidence            46789999999999999999976 56999999999999999988754  1  4899999999888765  4899988643

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.86  E-value=1.2e-09  Score=97.56  Aligned_cols=101  Identities=22%  Similarity=0.350  Sum_probs=71.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEE---cCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGV---DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ..+||+|||.|.++.+|.+. +.....+   |..+.+++.|.++    |+.   ..+-..-...+||+++.||+|.|..+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvp---a~~~~~~s~rLPfp~~~fDmvHcsrc  190 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVP---AMIGVLGSQRLPFPSNAFDMVHCSRC  190 (506)
T ss_pred             EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccc---hhhhhhccccccCCccchhhhhcccc
Confidence            56999999999999999864 3333332   4445566665543    432   11111223679999999999999988


Q ss_pred             ccCcccH-HHHHHHHHHcccCCcEEEEEecccC
Q 022248          204 LCSVKDV-DMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       204 l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +..+... ..+|-++.|+|+|||+++++.+...
T Consensus       191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cccchhcccceeehhhhhhccCceEEecCCccc
Confidence            8766433 4578999999999999999876443

; GO: 0008168 methyltransferase activity

>PLN02823 spermine synthase

Probab=98.84  E-value=4.5e-08  Score=85.72  Aligned_cols=106  Identities=19%  Similarity=0.266  Sum_probs=80.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+++||.||+|.|..+..+++. ...+++.+|+++.+++.+++.+...  .+..++++++.+|+... ...+++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            35679999999999999988874 3568999999999999999987532  23346899999998663 33457899999


Q ss_pred             EcccccCc----cc---HHHHHH-HHHHcccCCcEEEEE
Q 022248          200 GTLVLCSV----KD---VDMTLQ-EVRRVLKPGGIYLFV  230 (300)
Q Consensus       200 ~~~~l~~~----~~---~~~~l~-~~~~~LkpgG~l~~~  230 (300)
                      +... ...    +.   -.++++ .+.+.|+|||++++-
T Consensus       182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            8632 111    10   235677 899999999998763

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.83  E-value=1.4e-08  Score=86.93  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++... +++|+|+++.+++.+++++..     ++++++.+|+.++++++-.+|.|+++
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~~vv~N  112 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPLKVVAN  112 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcceEEEe
Confidence            4678999999999999999997644 999999999999999886532     48999999999887653225777765

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=8.6e-07  Score=68.95  Aligned_cols=129  Identities=22%  Similarity=0.264  Sum_probs=92.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ...-+||||||+|..+..|+.  .++..+.++|+++.+.+..++.++.++.   +++.+++|+...- ..++.|+++.+-
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l-~~~~VDvLvfNP  118 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGL-RNESVDVLVFNP  118 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhh-ccCCccEEEECC
Confidence            367899999999999988876  3667899999999999999888887764   5778888875532 338899988642


Q ss_pred             --ccc---Cc------------cc----HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248          203 --VLC---SV------------KD----VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL  261 (300)
Q Consensus       203 --~l~---~~------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (300)
                        +.-   .+            .+    .+.++..+-.+|.|.|+++++......                         
T Consensus       119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~-------------------------  173 (209)
T KOG3191|consen  119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK-------------------------  173 (209)
T ss_pred             CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC-------------------------
Confidence              111   11            11    245566677888899999997743221                         


Q ss_pred             chHHHHHHHhcCCcEEEEeee
Q 022248          262 TRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       262 ~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++.+.++.-||........
T Consensus       174 p~ei~k~l~~~g~~~~~~~~R  194 (209)
T KOG3191|consen  174 PKEILKILEKKGYGVRIAMQR  194 (209)
T ss_pred             HHHHHHHHhhcccceeEEEEE
Confidence            237778888888885555433

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.83  E-value=1.6e-07  Score=77.67  Aligned_cols=136  Identities=16%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHH-HHHHHHHcCCCCCCEE-EEecccCc-----CCCCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-AQTAAVAAGLPLTNFK-FLQAVGEA-----IPVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~-a~~~~~~~~~~~~~~~-~~~~d~~~-----~~~~~~~~D  196 (300)
                      .++.+|||+|||+|.++..+++....+++++|+++.|+.. .++.        +++. +...|+..     .+..-..+|
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~~D  145 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFATFD  145 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCceeee
Confidence            4678999999999999999998656689999999987765 2221        1222 23334332     221223677


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhc--CCcccchHHHHHHHhcCC
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVS--DGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf  274 (300)
                      +++++..+        .+..+.+.|+| |.+++.--..-+-+.      ......+-...  ......+++...+.+.||
T Consensus       146 vsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE~~~------~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~  210 (228)
T TIGR00478       146 VSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFEAGR------EKKNKKGVVRDKEAIALALHKVIDKGESPDF  210 (228)
T ss_pred             EEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhhhcH------hhcCcCCeecCHHHHHHHHHHHHHHHHcCCC
Confidence            66654433        47889999999 777765421111110      00000000000  001122466777788999


Q ss_pred             cEEEEeee
Q 022248          275 SSVELGNA  282 (300)
Q Consensus       275 ~~v~~~~~  282 (300)
                      +.+.+...
T Consensus       211 ~~~~~~~s  218 (228)
T TIGR00478       211 QEKKIIFS  218 (228)
T ss_pred             eEeeEEEC
Confidence            98777644

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.82  E-value=5.2e-09  Score=87.06  Aligned_cols=106  Identities=24%  Similarity=0.328  Sum_probs=85.2

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      .++++... .+..++|+|||.|.++..   .+...++|.|++...+..+++.        .......+|+..+|+.+.+|
T Consensus        37 ~qfl~~~~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~  104 (293)
T KOG1331|consen   37 RQFLDSQP-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESF  104 (293)
T ss_pred             HHHHhccC-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCcc
Confidence            34444443 588999999999976532   4667899999999988888764        12267889999999999999


Q ss_pred             cEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |.++...++||+..   ...+++++.|.|+|||..++..+.
T Consensus       105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            99999999999953   357899999999999998886543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.81  E-value=1e-07  Score=76.34  Aligned_cols=105  Identities=30%  Similarity=0.402  Sum_probs=75.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCce---------EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQ---------VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~---------~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      .++..|||.-||+|.+..+.+. .....         ++|.|+++.+++.|+++++..++. ..+.+...|+..+++.++
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGGTTS
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhcccccC
Confidence            4678999999999999877654 23333         899999999999999999999885 578999999999998788


Q ss_pred             cccEEEEcccccC-cc---c----HHHHHHHHHHcccCCcEEEE
Q 022248          194 SVDAVVGTLVLCS-VK---D----VDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       194 ~~D~v~~~~~l~~-~~---~----~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .+|.|+++--.-. +.   +    ...+++++.++|++..++++
T Consensus       106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen  106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            9999998531111 01   1    14568999999999434333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.79  E-value=3.9e-08  Score=84.76  Aligned_cols=74  Identities=18%  Similarity=0.212  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++++.+|+.+.++  ..||.|+++
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~--~~~d~VvaN  108 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEF--PYFDVCVAN  108 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhcc--cccCEEEec
Confidence            46789999999999999999874 568999999999999999988765532 589999999987765  368988864

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.78  E-value=1.3e-07  Score=72.48  Aligned_cols=104  Identities=15%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D  196 (300)
                      ..+.-|||+|.|+|.++.++++.  ....+++++++++.+....+..       +.+.++.+|+..+.     +.+..||
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~~l~e~~gq~~D  119 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRTTLGEHKGQFFD  119 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHHHHhhcCCCeee
Confidence            45679999999999999999874  5568999999999999988874       56778999997764     6778999


Q ss_pred             EEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .|+|..-+-.++-.  .++++.+...|.+||.++.....+
T Consensus       120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            99998777776533  578999999999999999988653

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.76  E-value=1.5e-06  Score=75.50  Aligned_cols=117  Identities=10%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  187 (300)
                      .....+...+ .++..|+|+|||+|.-+..|++.     ....++++|+|..+++.+.+.+....++.-.+.-+++|..+
T Consensus        65 ~~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        65 KHSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             HHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            3344444444 35668999999999876666541     35789999999999999999987443321233447888755


Q ss_pred             C----CC--CCCcccEEEEc-ccccCcccH--HHHHHHHHH-cccCCcEEEEE
Q 022248          188 I----PV--SDASVDAVVGT-LVLCSVKDV--DMTLQEVRR-VLKPGGIYLFV  230 (300)
Q Consensus       188 ~----~~--~~~~~D~v~~~-~~l~~~~~~--~~~l~~~~~-~LkpgG~l~~~  230 (300)
                      .    +-  ..+...+++.. .++.+++..  ..+|+++++ .|+|||.|++.
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            2    21  12345666654 477777544  468999999 99999998884

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00536 speE spermidine synthase; Provisional

Probab=98.76  E-value=5e-07  Score=76.14  Aligned_cols=99  Identities=14%  Similarity=0.008  Sum_probs=77.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      +.+++||=||.|.|..++.+++.+. +++-||+++.+++.+++.+...  ++..++++++.. +.  ....+.||+||+.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence            5679999999999999999998764 9999999999999999965432  345578887752 11  1123689999986


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ..     ....+++.+++.|+|||.++.-.
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            42     23567799999999999998844

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.75  E-value=1e-07  Score=77.14  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+.||.|.++..+++ .....|+++|+++.+++.++++++.+++. .++..+.+|+.++.. .+.+|-|++..
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~-~~~~drvim~l  177 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP-EGKFDRVIMNL  177 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-TTEEEEES-GGG----TT-EEEEEE--
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC-ccccCEEEECC
Confidence            4788999999999999999997 45668999999999999999999999986 689999999988764 78999999865


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~  228 (300)
                      --    ....++..+.+++++||.+-
T Consensus       178 p~----~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 PE----SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred             hH----HHHHHHHHHHHHhcCCcEEE
Confidence            22    22346788889999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.73  E-value=1.8e-07  Score=74.62  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=93.4

Q ss_pred             hcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEE
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVV  199 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~  199 (300)
                      +..++.+||.||-|.|.....+.+.+..+-+.|+..+.+++..+......   .++|....+-.++.  .++++.||-|.
T Consensus        98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen   98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             HhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcceeE
Confidence            33688999999999999888888777778899999999998877653222   35888888877764  36789999999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF  243 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  243 (300)
                      ....-.+..|...+.+.+.|+|||+|++-+..-....+..+...
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v  218 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV  218 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence            87665667888889999999999999998877655544443333

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.71  E-value=9.6e-07  Score=71.93  Aligned_cols=131  Identities=23%  Similarity=0.241  Sum_probs=100.5

Q ss_pred             CCeEEEECCCCChhHHHhH-hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~-~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      +.+++|||+|.|.-+..++ -.++.+++-+|....-+...+....+.++.  |++++.+.+++..-....||+|++..  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~~~~~~~D~vtsRA--  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFGQEKKQYDVVTSRA--  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcccccccCcEEEeeh--
Confidence            6899999999999888876 367788999999999999999999998884  89999999999863211199999854  


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                        +.+...++.-+..++|+||.+++.-.....         ..              ..+.++.....||..+.+.....
T Consensus       144 --va~L~~l~e~~~pllk~~g~~~~~k~~~~~---------~e--------------~~e~~~a~~~~~~~~~~~~~~~~  198 (215)
T COG0357         144 --VASLNVLLELCLPLLKVGGGFLAYKGLAGK---------DE--------------LPEAEKAILPLGGQVEKVFSLTV  198 (215)
T ss_pred             --ccchHHHHHHHHHhcccCCcchhhhHHhhh---------hh--------------HHHHHHHHHhhcCcEEEEEEeec
Confidence              456666778899999999988763311110         00              12677788888999888876655


Q ss_pred             C
Q 022248          285 S  285 (300)
Q Consensus       285 ~  285 (300)
                      +
T Consensus       199 p  199 (215)
T COG0357         199 P  199 (215)
T ss_pred             C
Confidence            4

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.71  E-value=7.1e-08  Score=77.38  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=77.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C---CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I---PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~---~~~~~~~D~v~~  200 (300)
                      ++.++||+-||+|.++...+.+...+++.||.++.+++..+++++..+.. .++.++..|+.. +   ......||+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            78999999999999999888877789999999999999999999988875 468888888643 2   124689999997


Q ss_pred             cccccCccc-HHHHHHHHH--HcccCCcEEEEEec
Q 022248          201 TLVLCSVKD-VDMTLQEVR--RVLKPGGIYLFVEH  232 (300)
Q Consensus       201 ~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~~~~~  232 (300)
                      . -.+.... ...++..+.  .+|+++|.+++-..
T Consensus       121 D-PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  121 D-PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             C-CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            4 2222233 366777776  78999998888663

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.71  E-value=1.7e-07  Score=79.59  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .++.+|||||||+|.++..+++.. ..++++|+++.+++.++++...    .++++++.+|+...+++  
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--   90 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--   90 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--
Confidence            334444443 467899999999999999998754 4799999999999999877643    14899999999888765  


Q ss_pred             ccc---EEEEcc
Q 022248          194 SVD---AVVGTL  202 (300)
Q Consensus       194 ~~D---~v~~~~  202 (300)
                      .+|   +|+++.
T Consensus        91 ~~d~~~~vvsNl  102 (253)
T TIGR00755        91 DFPKQLKVVSNL  102 (253)
T ss_pred             HcCCcceEEEcC
Confidence            466   666543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.70  E-value=3.3e-07  Score=76.69  Aligned_cols=162  Identities=17%  Similarity=0.122  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhhcCC-C-CeEEEECCCCC--hhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc
Q 022248          111 VAGYKSQLFDNLRGK-A-KKVLEIGIGTG--PNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~-~-~~vLDiGcG~G--~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d  184 (300)
                      ...++.+....+... + ...||||||-=  ..+.++++  .+.++|+.+|.++..+..++..+....-  ....++.+|
T Consensus        52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD  129 (267)
T PF04672_consen   52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQAD  129 (267)
T ss_dssp             HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--
T ss_pred             HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCC
Confidence            344555555555533 3 57999999943  45666665  5889999999999999999998865531  238899999


Q ss_pred             cCcCC-----------CCCCcccEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh
Q 022248          185 GEAIP-----------VSDASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP  250 (300)
Q Consensus       185 ~~~~~-----------~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  250 (300)
                      +.+..           +.-..-=.|++..++|+++|   +..++..+++.|.||.+|+++..+..........+...+..
T Consensus       130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~  209 (267)
T PF04672_consen  130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ  209 (267)
T ss_dssp             TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred             CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence            96531           11123336777889999854   67899999999999999999987765444433334333332


Q ss_pred             hhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          251 LQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ...  .....+.+++..+|.  ||+.++
T Consensus       210 ~~~--~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  210 AGS--PGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             CCS------B-HHHHHHCCT--TSEE-T
T ss_pred             CCC--CceecCHHHHHHHcC--CCccCC
Confidence            211  223567889988885  898644

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.69  E-value=7.7e-07  Score=76.21  Aligned_cols=132  Identities=18%  Similarity=0.168  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-C
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-E  186 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~  186 (300)
                      +.+.+.++...++ ..+.+|||+|||.|..+-++.+  ..-.+++++|.|+.|++.++..++..... ....+..... .
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~   96 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRD   96 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhcc
Confidence            4445555554443 4678999999999976655544  23458999999999999999877654311 1111111111 1


Q ss_pred             cCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          187 AIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       187 ~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      ..++  ...|+|++.++|..+++.  ..+++.+.+.+.+  .|+++++...........++..
T Consensus        97 ~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~  155 (274)
T PF09243_consen   97 FLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ  155 (274)
T ss_pred             cccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence            1222  234999999999999762  3456666665655  9999997665443333333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.69  E-value=3.1e-07  Score=77.30  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=80.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCC-cccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDA-SVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~-~~D~v  198 (300)
                      +.+.+||=||.|.|..+..+++.+ ..+++.||+++.+++.+++.+....  +..++++++.+|+... .-..+ .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            468899999999999999998754 4689999999999999999876532  3346899999998653 22223 89999


Q ss_pred             EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +....-...+.    -..+++.+.+.|+|||++++-.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            97443211111    2578999999999999999865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.69  E-value=1.2e-07  Score=84.77  Aligned_cols=99  Identities=21%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             CCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      +.+|||++||+|.++..++... ..+|+++|+++.+++.++++++.+++.  ++.+..+|+..+....+.||+|++.-  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~~~~fD~V~lDP--  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLHEERKFDVVDIDP--  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhhcCCCCEEEECC--
Confidence            4689999999999999997643 358999999999999999999988874  67789999876432146799999842  


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                        ......++....+.+++||.+++.
T Consensus       134 --~Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        134 --FGSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --CCCcHHHHHHHHHHhcCCCEEEEE
Confidence              133456778877889999999997

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.69  E-value=9.9e-07  Score=76.73  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=92.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||.-+|.|.+++.++......|+++|+++.+++.++++++-+++. ..+..+.+|+......-+.+|-|+++..
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            468999999999999999999866666999999999999999999999986 4589999999888765588999998653


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                          .+...++....+.+++||.+-+.+.....
T Consensus       266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence                24456788888999999999998876654

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=7.9e-07  Score=80.47  Aligned_cols=112  Identities=23%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--  190 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--  190 (300)
                      +.....+.+. .++.++||+=||.|.++..+++ ...+|+|+|+++.+++.|+++++.+++.  |+.|+.+++++...  
T Consensus       281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~--N~~f~~~~ae~~~~~~  357 (432)
T COG2265         281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGID--NVEFIAGDAEEFTPAW  357 (432)
T ss_pred             HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHHhhhc
Confidence            3333444443 3567999999999999999995 5669999999999999999999999985  79999999988642  


Q ss_pred             -CCCcccEEEEcccccCcccHH-HHHHHHHHcccCCcEEEEEec
Q 022248          191 -SDASVDAVVGTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       ....+|.|+..=-=   ...+ .+++.+ ..++|..+++++++
T Consensus       358 ~~~~~~d~VvvDPPR---~G~~~~~lk~l-~~~~p~~IvYVSCN  397 (432)
T COG2265         358 WEGYKPDVVVVDPPR---AGADREVLKQL-AKLKPKRIVYVSCN  397 (432)
T ss_pred             cccCCCCEEEECCCC---CCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence             23578999972100   0112 334444 44678888999884

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.67  E-value=1.3e-08  Score=80.55  Aligned_cols=94  Identities=20%  Similarity=0.273  Sum_probs=72.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      .+.++||+|.|.|..+..++. ...+|++.+.|..|..+.+++         +..++...  +..-.+-+||+|.|.+.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk---------~ynVl~~~--ew~~t~~k~dli~clNlL  179 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK---------NYNVLTEI--EWLQTDVKLDLILCLNLL  179 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc---------CCceeeeh--hhhhcCceeehHHHHHHH
Confidence            457999999999999988874 334799999999999888765         22222111  111123469999999999


Q ss_pred             cCcccHHHHHHHHHHcccC-CcEEEEE
Q 022248          205 CSVKDVDMTLQEVRRVLKP-GGIYLFV  230 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~Lkp-gG~l~~~  230 (300)
                      ....++-..++.++.+|+| +|++++.
T Consensus       180 DRc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  180 DRCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence            9888999999999999999 8988874

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.66  E-value=7.5e-07  Score=72.12  Aligned_cols=112  Identities=18%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C--
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I--  188 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~--  188 (300)
                      ++..+++.+  .++++||||.=+|+.+..++.  ..+.+++++|+++...+.+.+..+..++. .+++++++.+.+ +  
T Consensus        64 fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   64 FLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhHHH
Confidence            333444443  678999999999988877765  45789999999999999999999999986 799999998744 2  


Q ss_pred             ---CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          189 ---PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       189 ---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         ..+.++||+++...   .=.+....+.++.++||+||++++-.
T Consensus       141 l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence               24568999999742   11234467899999999999998854

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.9e-08  Score=73.37  Aligned_cols=76  Identities=18%  Similarity=0.174  Sum_probs=64.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++++++|+|||.|-+..+.+-.....++|+|+++++++.+.+++++..+   ++.+.++|..++-+..+.||.++.+-
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDtaviNp  122 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDTAVINP  122 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEeeEEecC
Confidence            47899999999999988665544556799999999999999999988765   67899999998877779999999754

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.64  E-value=2.9e-07  Score=81.68  Aligned_cols=73  Identities=22%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~  188 (300)
                      .+...+++.+...+..|||+-||.|.++..+++. ..+|+|||+++.+++.|+++++.+++.  +++|+.++++++
T Consensus       184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~--n~~f~~~~~~~~  256 (352)
T PF05958_consen  184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID--NVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHC
T ss_pred             HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC--cceEEEeeccch
Confidence            4444455555444448999999999999999864 559999999999999999999999984  999998877543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.62  E-value=1e-07  Score=77.60  Aligned_cols=116  Identities=17%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHH-------HcCCCCCCEEEEecc
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAV-------AAGLPLTNFKFLQAV  184 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~-------~~~~~~~~~~~~~~d  184 (300)
                      .+..+++.+. .++...+|||||.|....+.+-..+ ...+|||+.+...+.|+...+       ..+....++++..+|
T Consensus        30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            3444444444 5678999999999998877765334 459999999988877765332       334445688889999


Q ss_pred             cCcCCCCC---CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          185 GEAIPVSD---ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       185 ~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      +.+.++..   ...|+|++++.... ++....+.+...-||+|.+++..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence            86643211   34689999876543 45566678888889998887653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.62  E-value=4.5e-07  Score=77.31  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=82.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~v~~  200 (300)
                      ..++||-||.|.|..++.+++.. ..+++.+|+++.+++.+++.+....  ...++++++..|..+. .-..++||+|++
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            34699999999999999999853 5689999999999999999886543  2237899999998664 222348999998


Q ss_pred             cccccCcc----cHHHHHHHHHHcccCCcEEEEE
Q 022248          201 TLVLCSVK----DVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       201 ~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      ...-.--+    ....+++.+++.|+++|+++.-
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            65433111    1267899999999999999986

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.61  E-value=5.9e-07  Score=82.17  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=85.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~  200 (300)
                      .++.+|||+++|.|.-+.+++..  ....++++|+++.-++.++++++..|+.  ++.+...|...+. ...+.||.|++
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhhhchhhcCeEEE
Confidence            57889999999999999998874  3458999999999999999999999874  7888888887653 23467999994


Q ss_pred             ----cc--cccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 ----TL--VLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ----~~--~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                          +.  ++..-++                ..++|....+.|||||+|+.++.+..
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence                32  2221111                14678999999999999998875543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.59  E-value=5.1e-07  Score=80.81  Aligned_cols=104  Identities=24%  Similarity=0.309  Sum_probs=87.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS  206 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  206 (300)
                      .++|-+|||+-.+...+.+.....++-+|+|+..++.+.......   .+...+...|+..+.|++++||+|+....+++
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l~fedESFdiVIdkGtlDa  126 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDA  126 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---CcceEEEEecchhccCCCcceeEEEecCcccc
Confidence            499999999999999988877778999999999998887765311   24688999999999999999999999888887


Q ss_pred             cc-c---------HHHHHHHHHHcccCCcEEEEEecc
Q 022248          207 VK-D---------VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       207 ~~-~---------~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +- +         ....+.+++|+|+|||+++.+...
T Consensus       127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            62 1         134689999999999999998864

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.4e-06  Score=68.77  Aligned_cols=121  Identities=20%  Similarity=0.212  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248          111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (300)
Q Consensus       111 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  186 (300)
                      ....+.++.++..  .++.+|+|+|+..|.++..+++..  ...|+++|+.+--           .  .++|.++++|+.
T Consensus        29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~--~~~V~~iq~d~~   95 (205)
T COG0293          29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P--IPGVIFLQGDIT   95 (205)
T ss_pred             HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c--CCCceEEeeecc
Confidence            3344445555443  678999999999999999888743  3459999997631           1  247899999986


Q ss_pred             cCC--------CCCCcccEEEEcccc--------cCccc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH
Q 022248          187 AIP--------VSDASVDAVVGTLVL--------CSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW  244 (300)
Q Consensus       187 ~~~--------~~~~~~D~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  244 (300)
                      .-+        +....+|+|++...-        +|...   ....+.-...+|+|||.+++..+...........+
T Consensus        96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~  172 (205)
T COG0293          96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL  172 (205)
T ss_pred             CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence            643        344568999986544        22111   13456777889999999999887665543333333

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.49  E-value=2.2e-06  Score=67.91  Aligned_cols=107  Identities=20%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCC--CcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSD--ASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~--~~~D~v~~~  201 (300)
                      .+.++||+-+|+|.++...+.+....++.||.+..+....+++++..++. .++.++..|+... +-..  +.||+|+..
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            68999999999999999998888889999999999999999999988865 5788888888643 1122  359999974


Q ss_pred             cccc-CcccHHHHHHH--HHHcccCCcEEEEEec
Q 022248          202 LVLC-SVKDVDMTLQE--VRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~-~~~~~~~~l~~--~~~~LkpgG~l~~~~~  232 (300)
                      =-.+ .+.+....+..  -..+|+|+|.+++-..
T Consensus       122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            2222 11122223333  4578999999988653

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.7e-05  Score=65.78  Aligned_cols=97  Identities=16%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~  199 (300)
                      .++.+|||-|.|+|.++.++++  .+-.+++-.|......+.|.+.+++-++. +++++..-|+-...|  .+..+|.|+
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~~ks~~aDaVF  182 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFLIKSLKADAVF  182 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCccccccccceEE
Confidence            6899999999999999999987  45679999999999999999999999986 799999999876544  467899998


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGI  226 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~  226 (300)
                      ..     ++.+..++-.+..+||.+|.
T Consensus       183 LD-----lPaPw~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  183 LD-----LPAPWEAIPHAAKILKDEGG  204 (314)
T ss_pred             Ec-----CCChhhhhhhhHHHhhhcCc
Confidence            74     47777788888889998764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.44  E-value=2.9e-06  Score=69.15  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             EEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEcccccC
Q 022248          129 VLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTLVLCS  206 (300)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~  206 (300)
                      |.||||..|++..+|++.. ...++++|+++..++.|++++...++. +++++..+|... ++ +.+..|.|+...+=- 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG-   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG-   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG---GGG---EEEEEEE-H-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccccC-CCCCCCEEEEecCCH-
Confidence            6899999999999999853 346999999999999999999999986 689999999644 43 223378877543211 


Q ss_pred             cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          207 VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       207 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                       .-...++++....++....|++.. +.                          ....+++.|.+.||.++...
T Consensus        78 -~lI~~ILe~~~~~~~~~~~lILqP-~~--------------------------~~~~LR~~L~~~gf~I~~E~  123 (205)
T PF04816_consen   78 -ELIIEILEAGPEKLSSAKRLILQP-NT--------------------------HAYELRRWLYENGFEIIDED  123 (205)
T ss_dssp             -HHHHHHHHHTGGGGTT--EEEEEE-SS---------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred             -HHHHHHHHhhHHHhccCCeEEEeC-CC--------------------------ChHHHHHHHHHCCCEEEEeE
Confidence             123455666666666555666533 11                          11378899999999977665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.44  E-value=4.3e-06  Score=65.26  Aligned_cols=104  Identities=35%  Similarity=0.439  Sum_probs=74.6

Q ss_pred             EEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc--CCCCC-CcccEEEEccc
Q 022248          129 VLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSD-ASVDAVVGTLV  203 (300)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~~~~  203 (300)
                      ++|+|||+|... .+....  ...++|+|+++.++..++........  ..+.+...+...  +++.. ..||++ +...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--GLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            999999999865 333221  24899999999999985554432111  116788888776  77776 489999 5544


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      ..+..+....+.++.+.|+|+|.+++.......
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         128 VLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             ehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            444334788899999999999999998865543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.39  E-value=9.1e-07  Score=71.16  Aligned_cols=97  Identities=23%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------C--CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--SD  192 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~~  192 (300)
                      ++.+|||+||++|.++..+++..  ...++|+|+.+.           ..  ...+.++.+|.....        +  ..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~~   89 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPESG   89 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhccccc
Confidence            45899999999999999998865  589999999875           11  135667777764321        1  12


Q ss_pred             CcccEEEEcccccCccc-----------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          193 ASVDAVVGTLVLCSVKD-----------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +.||+|+|..+...-.+           ....+.-+...|+|||.+++.....
T Consensus        90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            68999999774332211           1234556667899999999877553

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.39  E-value=1e-06  Score=75.63  Aligned_cols=87  Identities=11%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-  189 (300)
                      ++.++++.+. .++..+||.+||.|..+..+++..  ...|+|+|.++.+++.+++++..  .  .++.++.+++.++. 
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--~ri~~i~~~f~~l~~   82 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--GRFTLVHGNFSNLKE   82 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--CcEEEEeCCHHHHHH
Confidence            3445555554 467799999999999999999853  47999999999999999988754  2  58999999998753 


Q ss_pred             -CCC--CcccEEEEcccc
Q 022248          190 -VSD--ASVDAVVGTLVL  204 (300)
Q Consensus       190 -~~~--~~~D~v~~~~~l  204 (300)
                       .++  .++|.|++....
T Consensus        83 ~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         83 VLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHHcCCCccCEEEECCCc
Confidence             111  279999975443

>PRK04148 hypothetical protein; Provisional

Probab=98.38  E-value=4.2e-06  Score=62.85  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=65.2

Q ss_pred             CCCeEEEECCCCCh-hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~  202 (300)
                      ++.+|||||||.|. ++..|++ .+.+|+++|+++..++.+++.         .+.++.+|+.+..+. -+.+|+|.+..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            45789999999996 7777775 578999999999999888775         467888998765432 35789998754


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                         .-++....+.++.+-+  |.-+++...
T Consensus        86 ---pp~el~~~~~~la~~~--~~~~~i~~l  110 (134)
T PRK04148         86 ---PPRDLQPFILELAKKI--NVPLIIKPL  110 (134)
T ss_pred             ---CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence               2233444445555433  455555543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.38  E-value=2.9e-06  Score=74.36  Aligned_cols=110  Identities=16%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--------CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC--CC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~  193 (300)
                      .++.+|+|.+||+|.++..+.+        ....+++|+|+++.++..++.++.-.+....+..+..+|....+..  ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            3556899999999999888765        2577999999999999999887765554433456777776554432  47


Q ss_pred             cccEEEEcc--ccc-C----c--------------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          194 SVDAVVGTL--VLC-S----V--------------KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       194 ~~D~v~~~~--~l~-~----~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .||+|+++-  ... +    .              .....++..+.+.|++||++.++.+.
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            899999842  111 0    0              01124789999999999998887743

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.36  E-value=2.9e-06  Score=70.27  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      .+..+.+... ++...|||+|.|||.++..|++ .+.+|+++++++.|+...+++.+..... ...+++.+|+...+++ 
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~d~P-  122 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKTDLP-  122 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccCCCc-
Confidence            4445555444 6788999999999999999996 5779999999999999999998765543 5889999999887654 


Q ss_pred             CcccEEEEc
Q 022248          193 ASVDAVVGT  201 (300)
Q Consensus       193 ~~~D~v~~~  201 (300)
                       .||.++.+
T Consensus       123 -~fd~cVsN  130 (315)
T KOG0820|consen  123 -RFDGCVSN  130 (315)
T ss_pred             -ccceeecc
Confidence             78999873

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.35  E-value=2.8e-06  Score=75.61  Aligned_cols=100  Identities=10%  Similarity=0.039  Sum_probs=81.3

Q ss_pred             CCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~  202 (300)
                      +.+|||+.||+|..++.++..  ...+|+++|+++.+++.++++++.+++.  ++.++..|+..+- ...+.||+|...-
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            368999999999999999875  3368999999999999999999888764  7889999987652 1235799998743


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                          +..+..++..+.+.+++||.|.+..
T Consensus       123 ----fGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 ----FGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence                2344568899999999999999973

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=3.7e-06  Score=70.38  Aligned_cols=87  Identities=14%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +.++++... .++.+|||||+|.|.++..|++. +..|+++++++.+++..++....    .++++++.+|+...+++.-
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~~~l   93 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDFPSL   93 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcchhh
Confidence            444555443 35789999999999999999975 45899999999999999988652    2589999999999887643


Q ss_pred             -cccEEEEcccccCc
Q 022248          194 -SVDAVVGTLVLCSV  207 (300)
Q Consensus       194 -~~D~v~~~~~l~~~  207 (300)
                       .++.|+.+ ..+++
T Consensus        94 ~~~~~vVaN-lPY~I  107 (259)
T COG0030          94 AQPYKVVAN-LPYNI  107 (259)
T ss_pred             cCCCEEEEc-CCCcc
Confidence             56777753 34444

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.30  E-value=6.2e-06  Score=65.10  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      -.+++|||+|+|+|..+...+......++..|+.+..+...+-+.+.+++   .+.+...|...   .+..||+|+...+
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~LagDl  151 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLAGDL  151 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEeece
Confidence            36899999999999988887776677899999999888888888888875   57777777644   4678999999998


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEE-Eeccc
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLF-VEHVA  234 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~  234 (300)
                      ++.-+....++. +.+.|+..|.-++ -++.+
T Consensus       152 fy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         152 FYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             ecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            887666666777 6666665555544 44433

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.29  E-value=1.5e-05  Score=67.58  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             CCeEEEECCCCChhHHHhHh-C--CCceEEEEcCCHHHHHHHHHHHH-HcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-D--TDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~--~~~~~~giD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      +.+|+=||||.=-++..+.. .  .+..++++|+++.+++.+++.+. ..++. .++.|+++|....+..-..||+|+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhccccccccCCEEEEh
Confidence            46999999998766655443 2  46789999999999999999887 44554 68999999998776555789999975


Q ss_pred             cccc-CcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLC-SVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~-~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .... .-.+..+++..+.+.++||..+++-.
T Consensus       200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            4333 22477889999999999999888854

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=2.2e-05  Score=69.76  Aligned_cols=110  Identities=18%  Similarity=0.221  Sum_probs=84.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~  197 (300)
                      .++.+|||++++.|.=+.++++.   .+..|+++|.++.-++..+++++..|+.  ++..+..|...++   ...+.||.
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--NVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEEecccccccccccccCcCcE
Confidence            57899999999999988888873   2456799999999999999999999985  6788888876553   22235999


Q ss_pred             EEEc------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          198 VVGT------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       198 v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      |++.      .++.--++                ..++|....+.|||||.|+.++....
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence            9952      23321121                24679999999999999999875443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.27  E-value=1.8e-06  Score=67.26  Aligned_cols=71  Identities=21%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCc-ccEEEE
Q 022248          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDAS-VDAVVG  200 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~v~~  200 (300)
                      .|+|+.||.|..+.++++. ..+|++||+++..++.|+.+++..|+. +++.|+++|+.++.  +.... +|+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhhccccccccEEEE
Confidence            6999999999999999975 558999999999999999999999975 79999999997752  22222 899997

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.24  E-value=2.2e-05  Score=60.39  Aligned_cols=101  Identities=25%  Similarity=0.346  Sum_probs=69.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCC-CCEEEEecccCcCCCCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      .+..+|+|+|||.|+++..++.     .++.++++||.++..++.+.++.+..+... .++.+..++...... ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            4678999999999999999998     678899999999999999999888766221 466666666544322 456777


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      ++..++--.+.  +.+++.+.+   |+-.+++.
T Consensus       103 ~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~  130 (141)
T PF13679_consen  103 LVGLHACGDLS--DRALRLFIR---PNARFLVL  130 (141)
T ss_pred             EEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence            77654433332  223444444   55554443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.21  E-value=2e-05  Score=67.94  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHH--HHH---cCCCCCCEEEEecccCcC-CCCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--AVA---AGLPLTNFKFLQAVGEAI-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~--~~~---~~~~~~~~~~~~~d~~~~-~~~~~~~D  196 (300)
                      +...+||-+|.|.|.-++++.+.+ ..+++-+|++|.|++.++..  ++.   .....++++++..|+.+. .-..+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            356789999999999999999876 56899999999999999843  332   223457899999888664 23446899


Q ss_pred             EEEEcccccCcccH-----HHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDV-----DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .||...---.-+..     .++..-+.+.|+++|.+++-.
T Consensus       368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            99975422211111     356788999999999998854

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.21  E-value=1.4e-05  Score=77.46  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=77.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-------------------------------------------CCceEEEEcCCHHHH
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-------------------------------------------TDVQVLGVDPNRKME  161 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~~~giD~s~~~~  161 (300)
                      ++..++|.+||+|.+++..+..                                           ...+++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            5689999999999998776530                                           113699999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEecccCcCCCC--CCcccEEEEccccc-Cc---ccHHHHHHHHHHcc---cCCcEEEEEec
Q 022248          162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTLVLC-SV---KDVDMTLQEVRRVL---KPGGIYLFVEH  232 (300)
Q Consensus       162 ~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~-~~---~~~~~~l~~~~~~L---kpgG~l~~~~~  232 (300)
                      +.|++++...++. +.+.|..+|+.+++.+  .++||+|+++--.- .+   .+...++.++.+.+   .+|+.+++...
T Consensus       270 ~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        270 QAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999999999985 5789999999887543  35799999862111 11   22334444444444   48988888663

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.13  E-value=9.6e-05  Score=60.04  Aligned_cols=133  Identities=18%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v  198 (300)
                      .++.+||-+|..+|....++++  .....|++|+.|+...+..-..++..    +|+--+.+|+....   .--+.+|+|
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVEMVDVI  147 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccccccEE
Confidence            5789999999999999999987  45679999999997766665555544    58988999986531   122589999


Q ss_pred             EEcccccCcccH-HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          199 VGTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       199 ~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      ++.-.  . ++. +-++.++...||+||.++++-....-+.  .....+                  .+-.+.|++.||+
T Consensus       148 ~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf------------------~~e~~~L~~~~~~  206 (229)
T PF01269_consen  148 FQDVA--Q-PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVF------------------AEEVKKLKEEGFK  206 (229)
T ss_dssp             EEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHH------------------HHHHHHHHCTTCE
T ss_pred             EecCC--C-hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHH------------------HHHHHHHHHcCCC
Confidence            97432  1 343 4467788889999999999764322111  000011                  1444667888999


Q ss_pred             EEEEee
Q 022248          276 SVELGN  281 (300)
Q Consensus       276 ~v~~~~  281 (300)
                      .++.-.
T Consensus       207 ~~e~i~  212 (229)
T PF01269_consen  207 PLEQIT  212 (229)
T ss_dssp             EEEEEE
T ss_pred             hheEec
Confidence            876653

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.10  E-value=4.8e-05  Score=71.48  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC---------CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT---------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PV  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~  190 (300)
                      ...+|||.|||+|.++..+++..         ...++|+|+++.++..++.++...+.  ..+.+...|....     .-
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeeccccccccccccc
Confidence            45689999999999998887521         25789999999999999998866541  1234444443221     11


Q ss_pred             CCCcccEEEEc
Q 022248          191 SDASVDAVVGT  201 (300)
Q Consensus       191 ~~~~~D~v~~~  201 (300)
                      ..+.||+|+.+
T Consensus       109 ~~~~fD~IIgN  119 (524)
T TIGR02987       109 YLDLFDIVITN  119 (524)
T ss_pred             ccCcccEEEeC
Confidence            12579999974

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.07  E-value=5.5e-05  Score=59.70  Aligned_cols=143  Identities=17%  Similarity=0.165  Sum_probs=86.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHH----HH--HHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKM----EK--YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~----~~--~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+|+|+=-|.|+++.-++..  +...|+++-..+..    .+  ..+...++...  .|++.+..+...++ +.+..
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--aN~e~~~~~~~A~~-~pq~~  123 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--ANVEVIGKPLVALG-APQKL  123 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--hhhhhhCCcccccC-CCCcc
Confidence            58899999999999999988762  34467766543321    11  11111111111  24555555554454 44667


Q ss_pred             cEEEEcccccCc-------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          196 DAVVGTLVLCSV-------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       196 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      |+++....-|.+       .....+...+++.|||||++++.++.-.+......           .....+.+...+...
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-----------t~~~~ri~~a~V~a~  192 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-----------TITLHRIDPAVVIAE  192 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh-----------hhhhcccChHHHHHH
Confidence            777753322211       23467899999999999999999965544221111           111234556688888


Q ss_pred             HHhcCCcEEEEe
Q 022248          269 ISEAGFSSVELG  280 (300)
Q Consensus       269 l~~aGf~~v~~~  280 (300)
                      .+.+||......
T Consensus       193 veaaGFkl~aeS  204 (238)
T COG4798         193 VEAAGFKLEAES  204 (238)
T ss_pred             HHhhcceeeeee
Confidence            999999965443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.00022  Score=60.48  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=92.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH---Hc-----------------------CCCC---
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV---AA-----------------------GLPL---  175 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~---~~-----------------------~~~~---  175 (300)
                      ...+||--|||.|+++..|+. .+..+-|-+.|--|+-...=.+.   ..                       .+..   
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~-~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLAC-LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             cCceEEecCCCchhHHHHHHH-hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            367899999999999999986 45567777777666533322220   00                       0000   


Q ss_pred             ---------CCEEEEecccCcC-C--CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHH
Q 022248          176 ---------TNFKFLQAVGEAI-P--VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF  243 (300)
Q Consensus       176 ---------~~~~~~~~d~~~~-~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  243 (300)
                               ..+....+|+.+. +  -..+.||+|+..+.+....+..+.++.|..+|||||+++=+.+....-....  
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~--  306 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH--  306 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC--
Confidence                     1122233444332 1  1235799999888888888889999999999999999987664321100000  


Q ss_pred             HHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          244 WQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                            .. .....--.+.+++..+...-||+++..+..+
T Consensus       307 ------g~-~~~~siEls~edl~~v~~~~GF~~~ke~~Id  339 (369)
T KOG2798|consen  307 ------GV-ENEMSIELSLEDLKRVASHRGFEVEKERGID  339 (369)
T ss_pred             ------CC-cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence                  00 0000113456799999999999988776433

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.04  E-value=0.00011  Score=57.58  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=77.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcC--------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI--------PVSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~--------~~~~  192 (300)
                      .++.+|||+||..|.++.-..+  .+...+.|||+-.-.             +.+-+.++.+ |+.+.        ..++
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------------PPEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------------CCCCcccccccccCCHHHHHHHHHhCCC
Confidence            6789999999999999977665  367889999974310             1234555665 44331        1456


Q ss_pred             CcccEEEEcccccCc----ccHHH-------HHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh
Q 022248          193 ASVDAVVGTLVLCSV----KDVDM-------TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ  252 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~----~~~~~-------~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  252 (300)
                      -..|+|++.+....-    .|...       ++.-....++|+|.+++-.+.......+.+.+...+....
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk  205 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK  205 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE
Confidence            789999986544321    23333       3344455668999999999888777666666665554443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.00  E-value=9.2e-06  Score=63.59  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=76.6

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  205 (300)
                      ...+.|+|.|+|.++...+. ...+|++|+.++...+.|++++.-.|.  .+++++.+|+....|  +..|+|+|-+.--
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEmlDT  107 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEMLDT  107 (252)
T ss_pred             hhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHHhhH
Confidence            36899999999999877665 466999999999999999999876775  499999999999988  4689999843211


Q ss_pred             Cc--ccHHHHHHHHHHcccCCcEEEE
Q 022248          206 SV--KDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       206 ~~--~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .+  .....++..+...||-++.++=
T Consensus       108 aLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         108 ALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HhhcccccHHHHHHHHHhhcCCcccc
Confidence            11  2334567777777888877664

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.98  E-value=4.4e-05  Score=63.19  Aligned_cols=107  Identities=12%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      +...+|+|||||---++..+.. .++..|+|+|++..+++.....+...+.   +..+...|...-+ +....|+.+..-
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK  179 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLLSDP-PKEPADLALLLK  179 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeeeccC-CCCCcchhhHHH
Confidence            3578999999999988887765 4568999999999999999999888875   5667777776553 457899999988


Q ss_pred             cccCcccHHH-HHHHHHHcccCCcEEEEEecccC
Q 022248          203 VLCSVKDVDM-TLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       203 ~l~~~~~~~~-~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +++.+..... .--++.+.++-. .++++.+...
T Consensus       180 ~lp~le~q~~g~g~~ll~~~~~~-~~vVSfPtrS  212 (251)
T PF07091_consen  180 TLPCLERQRRGAGLELLDALRSP-HVVVSFPTRS  212 (251)
T ss_dssp             -HHHHHHHSTTHHHHHHHHSCES-EEEEEEES--
T ss_pred             HHHHHHHHhcchHHHHHHHhCCC-eEEEeccccc
Confidence            7777654421 223333333222 4455554443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.98  E-value=6.1e-05  Score=59.85  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-----CCCEEEEecccCcC-C--CCCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-----LTNFKFLQAVGEAI-P--VSDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~d~~~~-~--~~~~~~  195 (300)
                      +...+.|||||.|.++..|+. .++.-++|++|-..+-++.+++++..+..     ..++.+...++... |  |..++.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            345799999999999999986 57888999999999999999988765411     23566665555432 2  222222


Q ss_pred             cEEEEcccccCccc--------HHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +-.+..+---|+..        ....+.+..-+|++||.++.+..
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            22222111111111        02468889999999999999773

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.98  E-value=0.00032  Score=56.76  Aligned_cols=111  Identities=12%  Similarity=0.054  Sum_probs=77.6

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +..+.+.+ +.+.++.||||-.+++..++.+ .....+++.|+++..++.|.+.+...++. ++++...+|....=-.+.
T Consensus         7 L~~va~~V-~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~l~~~d   84 (226)
T COG2384           7 LTTVANLV-KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAVLELED   84 (226)
T ss_pred             HHHHHHHH-HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccccCccC
Confidence            33444444 3566799999999999999987 45668999999999999999999999886 688888888743322344


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .+|+|+...+=-  .-...++++-.+.|+.=-++++
T Consensus        85 ~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          85 EIDVIVIAGMGG--TLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             CcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEE
Confidence            789888643211  2234456666665653334444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.96  E-value=3e-06  Score=61.73  Aligned_cols=99  Identities=26%  Similarity=0.359  Sum_probs=44.1

Q ss_pred             EEECCCCChhHHHhHhC--CC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEccc
Q 022248          130 LEIGIGTGPNLKYYAAD--TD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGTLV  203 (300)
Q Consensus       130 LDiGcG~G~~~~~l~~~--~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~  203 (300)
                      ||||+..|..+..+++.  ..  .+++++|..+. .+.+++.++..++. .+++++.++..+.  .++.++||+|+.-. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~~~~~~dli~iDg-   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSLPDGPIDLIFIDG-   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG--BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence            68999999988888762  22  37999999885 34444444444543 5799999998653  23357899999754 


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -|..+.....++.+.+.|+|||++++-+
T Consensus        78 ~H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DHSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2333455667899999999999988754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.92  E-value=0.00028  Score=61.28  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.++|||||++|.++..+++. +..|++||..+ +...    +..    .++|....+|.....-+.+.+|+++|..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LMD----TGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hhC----CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            57899999999999999999875 55999999544 2222    211    25888888887665323678999999653


Q ss_pred             ccCcccHHHHHHHHHHcccCC
Q 022248          204 LCSVKDVDMTLQEVRRVLKPG  224 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~Lkpg  224 (300)
                          ..+..+.+-+.++|..|
T Consensus       280 ----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        280 ----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ----cCHHHHHHHHHHHHhcC
Confidence                45667778888888665

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.91  E-value=0.00011  Score=55.63  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcccccC-----c-cc---HHHHHHHHH
Q 022248          150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS-----V-KD---VDMTLQEVR  218 (300)
Q Consensus       150 ~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~-----~-~~---~~~~l~~~~  218 (300)
                      +|+|+|+-+++++..++++++.++. .+++++..+-+.+.  .+++.+|+++.+..--.     + ..   -...++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            5899999999999999999999875 58999999887764  23358999997643211     1 11   246789999


Q ss_pred             HcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          219 RVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       219 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ++|+|||.+.++...+.+.+..-  ...               ..+|.+-|....|.+....
T Consensus        80 ~lL~~gG~i~iv~Y~GH~gG~eE--~~a---------------v~~~~~~L~~~~~~V~~~~  124 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPGHPGGKEE--SEA---------------VEEFLASLDQKEFNVLKYQ  124 (140)
T ss_dssp             HHEEEEEEEEEEE--STCHHHHH--HHH---------------HHHHHHTS-TTTEEEEEEE
T ss_pred             HhhccCCEEEEEEeCCCCCCHHH--HHH---------------HHHHHHhCCcceEEEEEEE
Confidence            99999999999998776643211  100               1255555666777765554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.90  E-value=6.2e-05  Score=64.21  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC--
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD--  192 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~--  192 (300)
                      ..+++.+. .++..|||||+|.|.++..|++.. .+++++|+++.+.+..++....    .++++++.+|+.++....  
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~~~~   94 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLYDLL   94 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGGGHC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccHHhh
Confidence            33444443 367899999999999999999765 7999999999999998887542    258999999998886543  


Q ss_pred             -CcccEEEEcccccCcccHHHHHHHHHH
Q 022248          193 -ASVDAVVGTLVLCSVKDVDMTLQEVRR  219 (300)
Q Consensus       193 -~~~D~v~~~~~l~~~~~~~~~l~~~~~  219 (300)
                       .....|+.+ ..+++.  ..++.++..
T Consensus        95 ~~~~~~vv~N-lPy~is--~~il~~ll~  119 (262)
T PF00398_consen   95 KNQPLLVVGN-LPYNIS--SPILRKLLE  119 (262)
T ss_dssp             SSSEEEEEEE-ETGTGH--HHHHHHHHH
T ss_pred             cCCceEEEEE-ecccch--HHHHHHHhh
Confidence             234455553 333332  234455544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.89  E-value=0.00025  Score=62.42  Aligned_cols=107  Identities=20%  Similarity=0.118  Sum_probs=78.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-----C----------------------------Cc-------eEEEEcCCHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-----T----------------------------DV-------QVLGVDPNRKMEKY  163 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-----~----------------------------~~-------~~~giD~s~~~~~~  163 (300)
                      .++..++|-=||+|.+++..+-.     +                            .+       .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            35578999999999998877641     1                            01       37799999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc--cccCc--ccH----HHHHHHHHHcccCCcEEEEEe
Q 022248          164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--VLCSV--KDV----DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       164 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~l~~~--~~~----~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+.+++..|+. +.|+|.++|+..+.-+-+.+|+|||+-  ...--  ...    ..+.+.+++.++--+.+++..
T Consensus       270 Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         270 AKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999999996 789999999998864437899999852  11100  111    234456666667777777765

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=2.6e-05  Score=70.36  Aligned_cols=105  Identities=20%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCC---CcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD---ASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~---~~~D~v  198 (300)
                      +.+..+||+.||||.++..+++ ....|+||++++..++.|+.+++.+++.  |.+|+++.++++ + +..   .+-++|
T Consensus       382 ~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE~~~~sl~~~~~~~~~~v  458 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS--NATFIVGQAEDLFPSLLTPCCDSETLV  458 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc--ceeeeecchhhccchhcccCCCCCceE
Confidence            4668899999999999999986 4559999999999999999999999985  999999977764 2 111   123333


Q ss_pred             EEcccccCcccH-HHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ....--.  ... ..+++.+.+.-++--.++++...
T Consensus       459 ~iiDPpR--~Glh~~~ik~l~~~~~~~rlvyvSCn~  492 (534)
T KOG2187|consen  459 AIIDPPR--KGLHMKVIKALRAYKNPRRLVYVSCNP  492 (534)
T ss_pred             EEECCCc--ccccHHHHHHHHhccCccceEEEEcCH
Confidence            3221111  111 23555555555577777776643

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.87  E-value=8.8e-05  Score=63.88  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~  199 (300)
                      .++.+|||++++.|.-+.++++.  ....+++.|++..-+...+.+++..|..  ++.....|.... + .....||.|+
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEeeccccccccccccccchhh
Confidence            47789999999999988888873  3579999999999999999999998874  788887777654 1 2234699999


Q ss_pred             E----c--ccccCccc----------------HHHHHHHHHHcc----cCCcEEEEEeccc
Q 022248          200 G----T--LVLCSVKD----------------VDMTLQEVRRVL----KPGGIYLFVEHVA  234 (300)
Q Consensus       200 ~----~--~~l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~  234 (300)
                      +    +  .++..-++                ..++|....+.+    ||||+++.++-..
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            5    2  12222222                246799999999    9999999988543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=0.0007  Score=57.52  Aligned_cols=84  Identities=10%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-  189 (300)
                      ++.+.++.+. .+++..+|.--|.|..+..+++..  ...++|+|-++.+++.|++.+...+   +++.++..++..+. 
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~   87 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAE   87 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHH
Confidence            4445555554 567899999999999999999854  3679999999999999999987654   48888888876542 


Q ss_pred             ----CCCCcccEEEE
Q 022248          190 ----VSDASVDAVVG  200 (300)
Q Consensus       190 ----~~~~~~D~v~~  200 (300)
                          ..-+.+|.|+.
T Consensus        88 ~l~~~~i~~vDGiL~  102 (314)
T COG0275          88 ALKELGIGKVDGILL  102 (314)
T ss_pred             HHHhcCCCceeEEEE
Confidence                22346777764

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.77  E-value=5.1e-05  Score=61.04  Aligned_cols=75  Identities=19%  Similarity=0.206  Sum_probs=61.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  200 (300)
                      ....|+|.-||.|..+...+. .+..|++||+++.-+..|+.+++..|++ ++++|+++|+.++    .+....+|+|..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~-~~~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFAL-QGPYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHH-hCCeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHHhhhhheeeeeec
Confidence            456899999999998888875 4668999999999999999999999997 5999999999764    344344667775


Q ss_pred             c
Q 022248          201 T  201 (300)
Q Consensus       201 ~  201 (300)
                      +
T Consensus       172 s  172 (263)
T KOG2730|consen  172 S  172 (263)
T ss_pred             C
Confidence            3

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=4.4e-05  Score=58.41  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCeEEEECCCCChh-HHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCc--CCCCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPN-LKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEA--IPVSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~-~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~--~~~~~~~~D~v~  199 (300)
                      .+.+|||+|.|--.+ +..++. .+...|...|-+...++..++....+-.. ...+....-+...  ...+...||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            457899999995443 444443 46678999999999999888776443111 1122111111111  123446899999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |..++..-......++.|+++|+|.|.-++..+-+
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence            98887765566778899999999999988876433

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.0015  Score=53.72  Aligned_cols=143  Identities=19%  Similarity=0.207  Sum_probs=92.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEE-EEecccCcCC---CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP---VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~d~~~~~---~~~~~~D~v~  199 (300)
                      .++..+||||+.||.++..+++....+|+++|..-.++..--+.   .    +++. +...|+..+.   +. +..|+++
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d----~rV~~~E~tN~r~l~~~~~~-~~~d~~v  149 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D----PRVIVLERTNVRYLTPEDFT-EKPDLIV  149 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C----CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence            68899999999999999999988788999999988766543222   1    3443 3445655442   33 3788999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcC---CcccchHHHHHHHhcCCcE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSD---GCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~aGf~~  276 (300)
                      |.-++.   ....+|..+..+++|+|.++..--..-+.+      +..... .....+   ......++.+.+.+.||++
T Consensus       150 ~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEag------r~~v~k-kGvv~d~~~~~~v~~~i~~~~~~~g~~~  219 (245)
T COG1189         150 IDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAG------REQVGK-KGVVRDPKLHAEVLSKIENFAKELGFQV  219 (245)
T ss_pred             EEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhh------hhhcCc-CceecCcchHHHHHHHHHHHHhhcCcEE
Confidence            865544   446678899999999999888653222111      111110 000000   0112347888888899998


Q ss_pred             EEEeeecc
Q 022248          277 VELGNAFL  284 (300)
Q Consensus       277 v~~~~~~~  284 (300)
                      ..+....+
T Consensus       220 ~gl~~Spi  227 (245)
T COG1189         220 KGLIKSPI  227 (245)
T ss_pred             eeeEccCc
Confidence            88875444

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.73  E-value=0.00014  Score=55.94  Aligned_cols=57  Identities=21%  Similarity=0.363  Sum_probs=47.3

Q ss_pred             eEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248          128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  186 (300)
                      ++||+|||.|.++..+++. +..+++++|+++.+.+.++++++..++.  ++.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeee
Confidence            4899999999999988864 3458999999999999999999887763  5777766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.00047  Score=51.99  Aligned_cols=122  Identities=18%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             HhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec
Q 022248          105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA  183 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  183 (300)
                      -+|...-.+.+...+..+. .+.++.+|+|+|.|+...+.++..-...+|+++++-.+.+++-+.-..++. ....|..-
T Consensus        51 vPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~Rk  129 (199)
T KOG4058|consen   51 VPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRK  129 (199)
T ss_pred             ccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhh
Confidence            3444444455555666665 455899999999999998888755568999999999999999888777775 57888888


Q ss_pred             ccCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       184 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+.+..+.+  |..|+.+.+-.-++|.+   .++..-+..|..++..-+
T Consensus       130 dlwK~dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRF  173 (199)
T KOG4058|consen  130 DLWKVDLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRF  173 (199)
T ss_pred             hhhhccccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEec
Confidence            887777654  44555544444445543   334444555666655443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.62  E-value=0.0044  Score=55.30  Aligned_cols=110  Identities=13%  Similarity=0.025  Sum_probs=65.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC----------------CCceEEEEcCCHHHHHHHHHHHHH---------cCC--CCCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD----------------TDVQVLGVDPNRKMEKYAQTAAVA---------AGL--PLTN  177 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~~giD~s~~~~~~a~~~~~~---------~~~--~~~~  177 (300)
                      +..+|+|+|||+|..+..+...                +..++..-|+...=....-+.+..         .++  ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            4678999999999776555321                346788888754333332222211         000  0001


Q ss_pred             EEEE---ecccCcCCCCCCcccEEEEcccccCccc--------------------------------------HHHHHHH
Q 022248          178 FKFL---QAVGEAIPVSDASVDAVVGTLVLCSVKD--------------------------------------VDMTLQE  216 (300)
Q Consensus       178 ~~~~---~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~  216 (300)
                      .-|+   .+.+..--|+.++.+++++.+++||+..                                      ...+|+.
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~  222 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA  222 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1122   2333333478999999999999998842                                      1123444


Q ss_pred             HHHcccCCcEEEEEeccc
Q 022248          217 VRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       217 ~~~~LkpgG~l~~~~~~~  234 (300)
                      =.+-|.|||++++....+
T Consensus       223 Ra~ELvpGG~mvl~~~Gr  240 (386)
T PLN02668        223 RAQEMKRGGAMFLVCLGR  240 (386)
T ss_pred             HHHHhccCcEEEEEEecC
Confidence            455688999999987655

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=1.4e-05  Score=60.61  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=45.1

Q ss_pred             EEEEecccCcCCCCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEec
Q 022248          178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       178 ~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.+++......+|.+++.|+|.+-++++|+.-  -..++++++|.|||||+|-+..+
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence            44455445567899999999999999999853  45689999999999999999764

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.58  E-value=0.00055  Score=58.74  Aligned_cols=80  Identities=15%  Similarity=0.083  Sum_probs=48.0

Q ss_pred             CCeEEEECCCCC-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCc-----CCCCCCcccEE
Q 022248          126 AKKVLEIGIGTG-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-----IPVSDASVDAV  198 (300)
Q Consensus       126 ~~~vLDiGcG~G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~~D~v  198 (300)
                      ..++||||+|.. .+.+..++..+.+++|+|+++..++.|+++++.+ ++. .+|+++...-..     +-...+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceeeEE
Confidence            468999999976 3444334456899999999999999999999998 775 688887553221     12234689999


Q ss_pred             EEcccccC
Q 022248          199 VGTLVLCS  206 (300)
Q Consensus       199 ~~~~~l~~  206 (300)
                      +|+=-++.
T Consensus       182 mCNPPFy~  189 (299)
T PF05971_consen  182 MCNPPFYS  189 (299)
T ss_dssp             EE-----S
T ss_pred             ecCCcccc
Confidence            99755543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.54  E-value=0.024  Score=47.00  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             CCCCeEEEECCCCChhHHHhH-hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~  200 (300)
                      ..+++||-+|=+.-.. ++++ .....+++.+|+++..++..++.+++.++   +++.+..|+.. +| --.+.||++++
T Consensus        43 L~gk~il~lGDDDLtS-lA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALALTGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred             ccCCEEEEEcCCcHHH-HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCEEEe
Confidence            4789999999665432 3332 35677999999999999999999999987   48888888855 34 22489999997


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      . -.+......-++.+....||..|...+......+. ....|.                   ++++.+.+.||-+.++.
T Consensus       119 D-PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~-------------------~~Q~~l~~~gl~i~dii  177 (243)
T PF01861_consen  119 D-PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWL-------------------EVQRFLLEMGLVITDII  177 (243)
T ss_dssp             ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHH-------------------HHHHHHHTS--EEEEEE
T ss_pred             C-CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHH-------------------HHHHHHHHCCcCHHHHH
Confidence            3 22223345668999999998866444444333221 111111                   66777778888876664

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.0049  Score=49.28  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=90.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~  199 (300)
                      .++.+||=+|..+|....++++- ....+++|+.|+...+..-..++..    +|+--+.+|+....   .-=+..|+|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy  150 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKVDVIY  150 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccccEEE
Confidence            67899999999999999999873 3468999999998887776666554    47888888886532   2225688888


Q ss_pred             EcccccCcccHH-HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          200 GTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       200 ~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ..-+   -++.. -+..++..-||+||.++++--...-+.+..  -...+              .+-.+.|++.||++++
T Consensus       151 ~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d--p~~vf--------------~~ev~kL~~~~f~i~e  211 (231)
T COG1889         151 QDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD--PEEVF--------------KDEVEKLEEGGFEILE  211 (231)
T ss_pred             EecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC--HHHHH--------------HHHHHHHHhcCceeeE
Confidence            6321   13333 356788899999998888654443321100  00011              1334567889999877


Q ss_pred             Eee
Q 022248          279 LGN  281 (300)
Q Consensus       279 ~~~  281 (300)
                      ...
T Consensus       212 ~~~  214 (231)
T COG1889         212 VVD  214 (231)
T ss_pred             Eec
Confidence            653

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.51  E-value=0.00076  Score=58.21  Aligned_cols=87  Identities=10%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--  189 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--  189 (300)
                      ++.++++.+. .++..++|.-+|.|..+..+++. +..+++|+|.++.+++.+++.++..+   .++.++.+++.++.  
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~   84 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEH   84 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHH
Confidence            3445555554 46789999999999999999874 34799999999999999999886542   48999999987653  


Q ss_pred             ---CCCCcccEEEEccc
Q 022248          190 ---VSDASVDAVVGTLV  203 (300)
Q Consensus       190 ---~~~~~~D~v~~~~~  203 (300)
                         ...+++|.|++...
T Consensus        85 l~~~~~~~vDgIl~DLG  101 (305)
T TIGR00006        85 LDELLVTKIDGILVDLG  101 (305)
T ss_pred             HHhcCCCcccEEEEecc
Confidence               23357999997543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.50  E-value=0.00026  Score=64.13  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS  206 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  206 (300)
                      ..|+|...|.|.|+.+|.+.+   |..+...+..-.-.-..+-+.|+    +.....=.|.++.-+.+||+|++..++..
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA~~lfs~  439 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHADGLFSL  439 (506)
T ss_pred             eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheehhhhhhh
Confidence            579999999999999997643   33333322210001111222332    22222223556666689999999888776


Q ss_pred             cc---cHHHHHHHHHHcccCCcEEEEEe
Q 022248          207 VK---DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       207 ~~---~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ..   +...++-|+-|+|+|+|.+++-+
T Consensus       440 ~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  440 YKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hcccccHHHHHHHhHhhcCCCceEEEec
Confidence            64   45788999999999999999966

; GO: 0008168 methyltransferase activity

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.0013  Score=59.83  Aligned_cols=129  Identities=18%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhcC----CCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248          101 NSSMKSYEAEVAGYKSQLFDNLRG----KAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAA  171 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~  171 (300)
                      +...-.|...-......+++..+.    ...+|+-+|.|.|-+..+..+     ....++++|+-++.++-..+. ....
T Consensus       339 EkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~  417 (649)
T KOG0822|consen  339 EKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFE  417 (649)
T ss_pred             hccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchh
Confidence            333334554444555556665542    245788999999988776654     245789999999999988876 3334


Q ss_pred             CCCCCCEEEEecccCcCCCCCCcccEEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEec
Q 022248          172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       172 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .++ .+|+++..|+..++-+.++.|++++- .|-.+.|   -.++|.-+.+.|||+|+.|=...
T Consensus       418 ~W~-~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  418 CWD-NRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             hhc-CeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            444 68999999999998556889998852 2222222   25788999999999998776443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.39  E-value=0.0012  Score=57.71  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-cCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|+=+|+| -|.++.++++..+++|+++|.+++-.+.|++.-        .-.++... ......-.+.||+|+..
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG--------Ad~~i~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG--------ADHVINSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC--------CcEEEEcCCchhhHHhHhhCcEEEEC
Confidence            578888888886 557888888867799999999999998888762        22333322 22222112349999975


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      -.       ...+....+.|++||.++++....
T Consensus       237 v~-------~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         237 VG-------PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence            43       335788899999999999998764

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.38  E-value=0.0027  Score=56.28  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v  198 (300)
                      .++.||||..+..|.=+.+++.  +....+++.|.+..-++..+.++...|+.  +......|...+|   ++. +||-|
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~~~~~~-~fDRV  316 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccccccCc-cccee
Confidence            5788999999999988888776  34568999999999999999999999874  6777777776654   443 89999


Q ss_pred             EE----cc--cccC------c---cc-------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          199 VG----TL--VLCS------V---KD-------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~----~~--~l~~------~---~~-------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +.    +.  ++.-      .   .+       .+++|......+++||+|+.++...
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            94    33  2211      1   11       2467888889999999999987544

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0044  Score=53.66  Aligned_cols=110  Identities=15%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCC-CCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVS-DASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~~D~v  198 (300)
                      ...++|||+|.|.|.-+.++-. .+. ..++.++.|+..-+.........+.  ....+...|+.  .++++ ...|+++
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCccceeehh
Confidence            4567899999999865554433 222 3577788888665555544433332  12223233321  12222 2456666


Q ss_pred             EEcccccCccc---HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          199 VGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       199 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +...-|-+..+   ....++.+..++.|||.|++++....
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            66554444332   23478999999999999999996543

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.29  E-value=0.007  Score=53.44  Aligned_cols=160  Identities=14%  Similarity=0.093  Sum_probs=79.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-----------------CCceEEEEcCCHHHHHHHHHHHHHcC--C-CCCCE--EEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-----------------TDVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNF--KFL  181 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~~giD~s~~~~~~a~~~~~~~~--~-~~~~~--~~~  181 (300)
                      ++..+|+|+||..|..+..+...                 +..+++.-|+-..=....-+.+....  + ...++  .-+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            45679999999999877666431                 12678888874432222222221110  0 00122  223


Q ss_pred             ecccCcCCCCCCcccEEEEcccccCccc---------------------------------------HHHHHHHHHHccc
Q 022248          182 QAVGEAIPVSDASVDAVVGTLVLCSVKD---------------------------------------VDMTLQEVRRVLK  222 (300)
Q Consensus       182 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------------~~~~l~~~~~~Lk  222 (300)
                      .+.+..--+|+++.|++++.+++||+..                                       ...+|+.=.+=|+
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv  174 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV  174 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence            4555555578999999999999998821                                       0123444455678


Q ss_pred             CCcEEEEEecccCCC-------chHHHHHHHhhhhhhh------------hhcCCcccchHHHHHHHhcC-CcEEEEeee
Q 022248          223 PGGIYLFVEHVAAKD-------GTFLKFWQNVVDPLQQ------------IVSDGCHLTRQTGNNISEAG-FSSVELGNA  282 (300)
Q Consensus       223 pgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~  282 (300)
                      |||++++........       ......+...+..+-.            .....+.+.+|+++.+++.| |++..++..
T Consensus       175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~  254 (334)
T PF03492_consen  175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF  254 (334)
T ss_dssp             EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred             cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence            999999987655441       1223333333222210            00112457789999997755 555545544


Q ss_pred             c
Q 022248          283 F  283 (300)
Q Consensus       283 ~  283 (300)
                      .
T Consensus       255 ~  255 (334)
T PF03492_consen  255 E  255 (334)
T ss_dssp             E
T ss_pred             e
Confidence            3

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.25  E-value=0.00092  Score=54.09  Aligned_cols=103  Identities=18%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             CCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------C-C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------V-S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~-~  191 (300)
                      ++..|+|+|.-.|..+..++.     ....+|+|||+........  ..+...+ .++++++++|..+..       . .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~-~~rI~~i~Gds~d~~~~~~v~~~~~  108 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM-SPRITFIQGDSIDPEIVDQVRELAS  108 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc-cCceEEEECCCCCHHHHHHHHHhhc
Confidence            678999999999987776654     2567999999954332221  1111122 158999999986532       1 1


Q ss_pred             CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .....+|+ ..+-|...+..+.|+....++++|+++++.+
T Consensus       109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            12333444 4455555677788888999999999999965

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=97.16  E-value=0.0002  Score=51.42  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             cccEEEEcccccCc------ccHHHHHHHHHHcccCCcEEEEEecccCC---CchHHHHHHHhhhhhhhhhcCCcccchH
Q 022248          194 SVDAVVGTLVLCSV------KDVDMTLQEVRRVLKPGGIYLFVEHVAAK---DGTFLKFWQNVVDPLQQIVSDGCHLTRQ  264 (300)
Q Consensus       194 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (300)
                      .||+|+|..+.-++      .....+++++++.|+|||.|++.-.....   ...........+..       --..+++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~-------i~lrP~~   73 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS-------IKLRPDQ   73 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH-----------GGG
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc-------eEEChHH
Confidence            48999999887766      23467899999999999999985432210   00011111111111       1234557


Q ss_pred             HHHHHHh--cCCcEEEEeee
Q 022248          265 TGNNISE--AGFSSVELGNA  282 (300)
Q Consensus       265 ~~~~l~~--aGf~~v~~~~~  282 (300)
                      +.+.|.+  .||..++....
T Consensus        74 F~~~L~~~evGF~~~e~~~~   93 (110)
T PF06859_consen   74 FEDYLLEPEVGFSSVEELGV   93 (110)
T ss_dssp             HHHHHTSTTT---EEEEE--
T ss_pred             HHHHHHhcccceEEEEEccc
Confidence            8888877  69998775443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.05  E-value=0.0014  Score=58.24  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~  202 (300)
                      .....|||||.|||.++...++..+-.+++++.-..|.+.|++....+|.. +++.++.---.++.. +....|+++.-.
T Consensus        65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev~vg~~~RadI~v~e~  143 (636)
T KOG1501|consen   65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEVKVGGSSRADIAVRED  143 (636)
T ss_pred             CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeeccccceeeecCcchhhhhhHhh
Confidence            345679999999999988777766778999999999999999999999987 688877554444321 123355554321


Q ss_pred             cccCc--ccHHHHHHHHHHcccC
Q 022248          203 VLCSV--KDVDMTLQEVRRVLKP  223 (300)
Q Consensus       203 ~l~~~--~~~~~~l~~~~~~Lkp  223 (300)
                      ..-.+  ......+++.++.|..
T Consensus       144 fdtEligeGalps~qhAh~~L~~  166 (636)
T KOG1501|consen  144 FDTELIGEGALPSLQHAHDMLLV  166 (636)
T ss_pred             hhhhhhccccchhHHHHHHHhcc
Confidence            11111  1122345677766643

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.02  E-value=0.12  Score=44.04  Aligned_cols=153  Identities=13%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCc-C-------CCCCCccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEA-I-------PVSDASVD  196 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~-------~~~~~~~D  196 (300)
                      ...|+.+|||--.-...+....+..++=+|. +++++.-++.+.+.+. ...+..++..|+.. +       .+..+.--
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt  160 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT  160 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence            4569999999876665554333466777775 4455555566665432 23578888888852 1       13334455


Q ss_pred             EEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh---hhhcCCcccchHHHHHHHh
Q 022248          197 AVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ---QIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       197 ~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~  271 (300)
                      ++++-.++.+++.  ...+++.+.+...||+.+++-..............+.......   ..........+++.+.|..
T Consensus       161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  240 (260)
T TIGR00027       161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE  240 (260)
T ss_pred             eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence            7778888888854  4578999998888998888754433111111111111111110   0011123467899999999


Q ss_pred             cCCcEEEE
Q 022248          272 AGFSSVEL  279 (300)
Q Consensus       272 aGf~~v~~  279 (300)
                      .||+..+.
T Consensus       241 ~Gw~~~~~  248 (260)
T TIGR00027       241 RGWRASEH  248 (260)
T ss_pred             CCCeeecC
Confidence            99998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.90  E-value=0.02  Score=49.26  Aligned_cols=122  Identities=16%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC--CCcccEEEEccccc
Q 022248          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTLVLC  205 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~l~  205 (300)
                      +++|+.||.|.+...+.......+.++|+++.+++..+.+..       .. ++.+|+.++...  .+.+|+++...-..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------NK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------CC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence            699999999999888765444457889999999988887752       11 456677665422  35799999765333


Q ss_pred             Cc---------ccHH-HHHHHHHH---cccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          206 SV---------KDVD-MTLQEVRR---VLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       206 ~~---------~~~~-~~l~~~~~---~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      .+         .|.. .++.++.+   .++|.  +++++++..-...                 ......+.+.+.|++.
T Consensus        74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~-----------------~~~~~~~~i~~~l~~~  134 (275)
T cd00315          74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH-----------------DNGNTLKVILNTLEEL  134 (275)
T ss_pred             hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc-----------------CchHHHHHHHHHHHhC
Confidence            22         1222 23333333   34554  5666655432110                 0001124777888889


Q ss_pred             CCcE
Q 022248          273 GFSS  276 (300)
Q Consensus       273 Gf~~  276 (300)
                      ||.+
T Consensus       135 GY~~  138 (275)
T cd00315         135 GYNV  138 (275)
T ss_pred             CcEE
Confidence            9884

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0078  Score=51.00  Aligned_cols=108  Identities=17%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI--PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~--~~~~~~~D~v  198 (300)
                      ...+++|-||.|.|.+.+..+.+ .-.++..+|+....++..++.....  +...+++.+..+|...+  ..+.++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            46789999999999998888764 3357889999999999999877653  45557899998887543  2447899999


Q ss_pred             EEcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.-..---.+-    .+.+++.+.+.||+||+++...
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            96432111111    2457889999999999999865

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.71  E-value=0.014  Score=48.77  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=70.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----CCCEEEEecccCc---CCCCCCc-cc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQAVGEA---IPVSDAS-VD  196 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~---~~~~~~~-~D  196 (300)
                      ...+||++|+|+|..+...+.....+|.-.|....+ ...+.+.......    ...+.....+...   ..+..+. +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            356799999999977777666678899999985543 3333332222111    0133333323222   1122233 99


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|+...+++.......++.-++..|..+|.+++....+
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            99999999988888888888999998888666665433

>PHA01634 hypothetical protein

Probab=96.50  E-value=0.038  Score=40.86  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=52.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      -.+++|+|||.+.|..+++++-.....|+++++++...+..++.++...+- ++..    -....+-.=+.||+.++
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~-DK~v----~~~eW~~~Y~~~Di~~i   98 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC-DKAV----MKGEWNGEYEDVDIFVM   98 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee-ecee----ecccccccCCCcceEEE
Confidence            478999999999999999988777778999999999999999877654321 1111    11123333467887775

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.44  E-value=0.0065  Score=46.79  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=63.5

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEE-EEecccC-cCCCCCCcccEEEEccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK-FLQAVGE-AIPVSDASVDAVVGTLV  203 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~d~~-~~~~~~~~~D~v~~~~~  203 (300)
                      +++.+-+|+..=+.-....+....++.-||.++--++.--+         +++. +...|+. +..--.++||.+.|..+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s   72 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS   72 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence            46788888887655544445566678888876532211100         1111 1111111 11112478999999999


Q ss_pred             ccCcc-----c---H---HHHHHHHHHcccCCcEEEEEecccCC
Q 022248          204 LCSVK-----D---V---DMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       204 l~~~~-----~---~---~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      ++|+-     |   +   ...+.++.++|||||.|++..+...+
T Consensus        73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d  116 (177)
T PF03269_consen   73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD  116 (177)
T ss_pred             hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence            98871     2   2   45789999999999999999877653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.43  E-value=0.027  Score=52.44  Aligned_cols=100  Identities=21%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-----------C--C
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-----------I--P  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----------~--~  189 (300)
                      .++.+|+=+|||. |..+...++..+++|+++|.++..++.+++.    |     .++...+..+           +  .
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G-----A~~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G-----AEFLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C-----CeEEEeccccccccccchhhhcchh
Confidence            3688999999995 5566666777788999999999988888763    2     1222111100           0  0


Q ss_pred             --------CCC--CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          190 --------VSD--ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 --------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                              +.+  ..+|+|+.......-+.+..+.+++.+.+||||+++.+..
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                    011  4699999765543323343446999999999999998764

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.36  E-value=0.014  Score=50.09  Aligned_cols=108  Identities=21%  Similarity=0.222  Sum_probs=74.2

Q ss_pred             CeEEEECCCCChhHHHhHhC---------------------CCceEEEEcCCH--HHHHHHHHHHHHc------------
Q 022248          127 KKVLEIGIGTGPNLKYYAAD---------------------TDVQVLGVDPNR--KMEKYAQTAAVAA------------  171 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~---------------------~~~~~~giD~s~--~~~~~a~~~~~~~------------  171 (300)
                      .+||.||.|-|.=..+++..                     ....++.||+.+  .++......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            69999999998544444321                     114899999865  5566665555443            


Q ss_pred             -CCC--CCCEEEEecccCcCCCC-------CCcccEEEEcccccCc-----ccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          172 -GLP--LTNFKFLQAVGEAIPVS-------DASVDAVVGTLVLCSV-----KDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       172 -~~~--~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                       ...  .=++.|.+.|+..+..+       ....|+|+..+.+..+     ..-.++|..+-..++||..|+|++..+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG  245 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG  245 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence             001  11578899998776532       2357899888877755     344578999999999999999998654

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.36  E-value=0.011  Score=48.32  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-------CC---ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-------TD---VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----  189 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-------~~---~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----  189 (300)
                      .-.+++|+....|.++..|.++       .+   ..+++||+-+ |          ..+  +.|.-+++|+....     
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M----------aPI--~GV~qlq~DIT~~stae~I  107 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M----------API--EGVIQLQGDITSASTAEAI  107 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C----------Ccc--CceEEeecccCCHhHHHHH
Confidence            4578999999999999888763       11   2399999844 2          111  46677888886542     


Q ss_pred             ---CCCCcccEEEEccc-----ccCcccH------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248          190 ---VSDASVDAVVGTLV-----LCSVKDV------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV  248 (300)
Q Consensus       190 ---~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  248 (300)
                         |..+..|+|+|..+     +|.+...      ...|.-...+|||||.|+.--+-......+..-++.++
T Consensus       108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff  180 (294)
T KOG1099|consen  108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFF  180 (294)
T ss_pred             HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHh
Confidence               56679999999654     4444332      24567778899999999886544433333333333333

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.35  E-value=0.035  Score=49.82  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~  201 (300)
                      ++.+|||.=+|+|.=++.++..  ...+|+.-|+++.+++..+++++.+++..+.+++...|+..+- ...+.||+|=. 
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-  127 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-  127 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence            4568999999999877776653  3468999999999999999999999987436888888886643 34678999975 


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         ..+-.+..++....+.++.||.|.+..
T Consensus       128 ---DPfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 ---DPFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             -----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence               334566778999999999999999964

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK10742 putative methyltransferase; Provisional

Probab=96.31  E-value=0.039  Score=46.14  Aligned_cols=74  Identities=11%  Similarity=0.059  Sum_probs=56.8

Q ss_pred             eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CC---CCCEEEEecccCcC-CCCCCcccEEE
Q 022248          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----LP---LTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~----~~---~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +|||+-+|.|..+..++.. +++|+++|-++.+....+..++...    +.   ..+++++.+|.... .-....||+|+
T Consensus        91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY  169 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_pred             EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence            8999999999999999865 6679999999999999998887641    11   13688888887553 21234799999


Q ss_pred             Ecc
Q 022248          200 GTL  202 (300)
Q Consensus       200 ~~~  202 (300)
                      +.=
T Consensus       170 lDP  172 (250)
T PRK10742        170 LDP  172 (250)
T ss_pred             ECC
Confidence            743

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.22  E-value=0.021  Score=46.70  Aligned_cols=84  Identities=17%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             hcCCCCeEEEECCCCChhHHHh-HhCCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCc-----CCCCCCc
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYY-AADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-----IPVSDAS  194 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l-~~~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~  194 (300)
                      +..+..++||||.|.--.=-.+ ....+...+|.|+++..++.|+..+..+ ++. ..++.....-..     +-...+.
T Consensus        75 ~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~~~~if~giig~nE~  153 (292)
T COG3129          75 IPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKDSDAIFNGIIGKNER  153 (292)
T ss_pred             CCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccCccccccccccccce
Confidence            3356778999998864211111 1257889999999999999999998876 443 345544332111     1234689


Q ss_pred             ccEEEEcccccC
Q 022248          195 VDAVVGTLVLCS  206 (300)
Q Consensus       195 ~D~v~~~~~l~~  206 (300)
                      ||+++|+--+|.
T Consensus       154 yd~tlCNPPFh~  165 (292)
T COG3129         154 YDATLCNPPFHD  165 (292)
T ss_pred             eeeEecCCCcch
Confidence            999999876663

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.03  Score=49.09  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHhhcC-CCCeEEEECCCCChhHHHhHhC---------CCceEEEEcCCHHHHHHHHHHHHHc
Q 022248          106 SYEAEVAGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVAA  171 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~---------~~~~~~giD~s~~~~~~a~~~~~~~  171 (300)
                      -+.+.++.+..++.+.+.. .+..++|+|.|+|.+...+++.         ...++..|++|+...+.-++.++..
T Consensus        57 lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          57 LFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            3455567777777777763 4678999999999999888762         2578999999999988888887654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.11  E-value=0.029  Score=54.54  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--------CC-----CceEEEEcCCH---HHHHHHH-----------HHHHH-----c
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--------DT-----DVQVLGVDPNR---KMEKYAQ-----------TAAVA-----A  171 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~~~giD~s~---~~~~~a~-----------~~~~~-----~  171 (300)
                      .+.-+|+|+|-|+|.......+        .+     ..+++++|..+   +.+..+-           +....     .
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            3457999999999975554442        11     35899999643   3332221           11111     1


Q ss_pred             CC-----CCC--CEEEEecccCc-CCCCCCcccEEEEc-ccccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248          172 GL-----PLT--NFKFLQAVGEA-IPVSDASVDAVVGT-LVLCSVKDV--DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       172 ~~-----~~~--~~~~~~~d~~~-~~~~~~~~D~v~~~-~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++     ...  ++++..+|+.+ ++--...+|+++.. ++...-+++  ..+++.+.++++|||.+...+
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            11     001  33456677654 23222569999974 333333443  578999999999999998754

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.10  E-value=0.011  Score=51.19  Aligned_cols=85  Identities=13%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--  189 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--  189 (300)
                      ++.+.++.+. .+++.++|.--|.|..+..+++. ++..++|+|.++.+++.|++++...   .+++.++.+++.++.  
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHH
Confidence            3444555554 56789999999999999999974 5589999999999999998877544   258999999987753  


Q ss_pred             ---C-CCCcccEEEEc
Q 022248          190 ---V-SDASVDAVVGT  201 (300)
Q Consensus       190 ---~-~~~~~D~v~~~  201 (300)
                         . .-..+|.|+..
T Consensus        85 l~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   85 LKELNGINKVDGILFD  100 (310)
T ss_dssp             HHHTTTTS-EEEEEEE
T ss_pred             HHHccCCCccCEEEEc
Confidence               2 34689999964

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=96.07  E-value=0.31  Score=43.89  Aligned_cols=105  Identities=19%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             CCCCeEEEECCCCCh----hHHHhHhC----CCceEEEEcC----CHHHHHHHHHHHHH----cCCCCCCEEEEe---cc
Q 022248          124 GKAKKVLEIGIGTGP----NLKYYAAD----TDVQVLGVDP----NRKMEKYAQTAAVA----AGLPLTNFKFLQ---AV  184 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~----~~~~l~~~----~~~~~~giD~----s~~~~~~a~~~~~~----~~~~~~~~~~~~---~d  184 (300)
                      .+..+|+|+|.|.|.    +...|+.+    +..++|||+.    +...++.+.+++.+    .|+   .++|..   .+
T Consensus       109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv---~fef~~v~~~~  185 (374)
T PF03514_consen  109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV---PFEFHPVVVES  185 (374)
T ss_pred             CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc---cEEEEecccCc
Confidence            356789999999993    45555543    4478999999    77778777776543    455   345544   23


Q ss_pred             cCcC-----CCCCCcccEEEEcccccCccc-------HHHHHHHHHHcccCCcEEEEEe
Q 022248          185 GEAI-----PVSDASVDAVVGTLVLCSVKD-------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       185 ~~~~-----~~~~~~~D~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .+.+     ...++..=+|-|.+.+|++.+       +...+-...+.|+|.-.+++..
T Consensus       186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~  244 (374)
T PF03514_consen  186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ  244 (374)
T ss_pred             hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence            3333     233444445556777788742       2334455666799995555543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.05  E-value=0.024  Score=48.06  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhc-C-CCCeEEEECCCCChhHHHhHhC---------CCceEEEEcCCHHHHHHHHHHHHH
Q 022248          113 GYKSQLFDNLR-G-KAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVA  170 (300)
Q Consensus       113 ~~~~~~~~~~~-~-~~~~vLDiGcG~G~~~~~l~~~---------~~~~~~giD~s~~~~~~a~~~~~~  170 (300)
                      .++........ + ...+|+|+|.|+|.++..+++.         ...+++.||+|+.+.+.-++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            34444444443 2 2479999999999999998762         236899999999998888887654

; PDB: 4F3N_A 1ZKD_B.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=96.05  E-value=0.013  Score=49.56  Aligned_cols=112  Identities=18%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             HhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc----C-CCCCCEEE---EecccCcCCC-
Q 022248          120 DNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA----G-LPLTNFKF---LQAVGEAIPV-  190 (300)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~----~-~~~~~~~~---~~~d~~~~~~-  190 (300)
                      ..+...+++|||+|||.|.............+...|.+...++.-.--....    + ...+.-.+   ......+.-+ 
T Consensus       111 ~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~  190 (282)
T KOG2920|consen  111 AQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN  190 (282)
T ss_pred             hheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh
Confidence            3445678999999999998887776555467888888877763211100000    0 00001111   1110001111 


Q ss_pred             CCC--cccEEEEcccccCcccHHHH-HHHHHHcccCCcEEEEEe
Q 022248          191 SDA--SVDAVVGTLVLCSVKDVDMT-LQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       191 ~~~--~~D~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~~~  231 (300)
                      ..+  .||+|.+...++........ ......+++++|.+++..
T Consensus       191 ~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  191 HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence            113  79999998888887766665 667777788899888754

>PRK11524 putative methyltransferase; Provisional

Probab=96.01  E-value=0.028  Score=48.56  Aligned_cols=57  Identities=11%  Similarity=0.031  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA  170 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~  170 (300)
                      .++..++.....++..|||.-||+|..+.+.. ..+-+++|+|++++..+.|++++..
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            45566666666789999999999998877655 4677999999999999999999753

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.97  E-value=0.11  Score=48.38  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhC----C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-C----CCCc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD----T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V----SDAS  194 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~----~~~~  194 (300)
                      +..+|.|..||+|.+.....+.    . ...++|.|+++.....++.++--.++.. .+....+|...-| .    ..+.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCccc
Confidence            5669999999999888777652    2 3679999999999999999877666542 3445555543333 2    3367


Q ss_pred             ccEEEEccccc---Cc---------------------ccH-HHHHHHHHHcccCCcEEEEEeccc
Q 022248          195 VDAVVGTLVLC---SV---------------------KDV-DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       195 ~D~v~~~~~l~---~~---------------------~~~-~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ||.|+++--..   +.                     ... ...++++...|+|||+..++-+..
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            99988632110   00                     011 567899999999998777766444

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.92  E-value=0.048  Score=43.37  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=76.1

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------CCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSD  192 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~  192 (300)
                      ++..|+|+|.-.|..+...+.   ..+  .+|+++|++-..+.-+...       .+++.|++++-.+..       ...
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~~~  141 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRLKN  141 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHHhc
Confidence            678899999999877776664   233  7999999988766555443       268999999876643       223


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +.--+.+|..+-|+.....+.++...++|.-|-++++.+-+
T Consensus       142 ~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         142 EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence            33356667778888877888889999999999999997643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.86  E-value=0.16  Score=45.21  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=65.8

Q ss_pred             CCCeEEEECCCC-ChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-c-Cc-CCCCC-CcccEE
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-G-EA-IPVSD-ASVDAV  198 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~-~~-~~~~~-~~~D~v  198 (300)
                      ++.+|+=+|||. |.++..+++ ....+++.+|.++.-++.|++.....     .+.....+ . .. ..... ..+|++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCCEE
Confidence            444899999995 555566666 34578999999999999998853211     11111110 0 00 01112 369999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      +-...      ....+..+.+.++|||.+.++......
T Consensus       243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         243 IEAVG------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             EECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            95443      233678999999999999998866544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.85  E-value=0.072  Score=48.15  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-c-CcC-CC-CCCcccE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-G-EAI-PV-SDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-~-~~~-~~-~~~~~D~  197 (300)
                      .++.+||.+|||. |..+..+++..+. +++++|.++...+.+++..   +.  ..+.+...+ . ..+ .+ ....+|+
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~--~vi~~~~~~~~~~~l~~~~~~~~~D~  257 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA--ETINFEEVDDVVEALRELTGGRGPDV  257 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc--EEEcCCcchHHHHHHHHHcCCCCCCE
Confidence            4678999999987 8888888876665 5999999999888877642   11  111111111 1 001 11 2346999


Q ss_pred             EEEcccc---------------cCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVL---------------CSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+..-.-               ....+....+.++.+.|+|+|.++....
T Consensus       258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            9864321               1113345678999999999999999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.83  E-value=0.028  Score=46.48  Aligned_cols=53  Identities=13%  Similarity=0.175  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~  166 (300)
                      .++.+++.....++..|||.-||+|..+.+.. ..+-+++|+|+++...+.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence            45555666666789999999999998887765 467799999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=95.79  E-value=0.045  Score=45.56  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~  171 (300)
                      .++..++.....++..|||.-||+|..+.+.. ..+..++|+|+++...+.+.++++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            34455555555788999999999998887765 46779999999999999999988654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.68  E-value=0.018  Score=41.25  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR  158 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~  158 (300)
                      +....+|||||+|.+..-|. ..+..-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHH-hCCCCcccccccc
Confidence            46789999999998776665 4577889999743

; GO: 0008168 methyltransferase activity

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.59  E-value=0.34  Score=42.48  Aligned_cols=121  Identities=16%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             eEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcccc
Q 022248          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTLVL  204 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l  204 (300)
                      +++|+-||.|.+...+.......+.++|+++.+.+..+.+.       +  ....+|+.++.   ++. .+|+++...-.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPC   71 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------P--EVICGDITEIDPSDLPK-DVDLLIGGPPC   71 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------c--ccccccccccccccccc-cceEEEeccCC
Confidence            68999999999998887654456889999999999888886       2  67788887764   443 59999975433


Q ss_pred             cCc---------ccHHH-H---HHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          205 CSV---------KDVDM-T---LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       205 ~~~---------~~~~~-~---l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      ..+         .|... +   +-++.+.++|.  +++.+++..-.....                 ....+.+.+.|++
T Consensus        72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~-----------------~~~~~~i~~~l~~  132 (335)
T PF00145_consen   72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKN-----------------GEVFKEILEELEE  132 (335)
T ss_dssp             TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGG-----------------HHHHHHHHHHHHH
T ss_pred             ceEeccccccccccccchhhHHHHHHHhhccce--EEEecccceeecccc-----------------ccccccccccccc
Confidence            322         22221 2   34444555774  455565543211000                 0112477888899


Q ss_pred             cCCcEE
Q 022248          272 AGFSSV  277 (300)
Q Consensus       272 aGf~~v  277 (300)
                      .||.+.
T Consensus       133 lGY~v~  138 (335)
T PF00145_consen  133 LGYNVQ  138 (335)
T ss_dssp             TTEEEE
T ss_pred             cceeeh
Confidence            998854

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.48  E-value=0.096  Score=46.05  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=75.0

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV  203 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~  203 (300)
                      ..+|||.=+|+|.=++.++...+. +++.-|+|+.+++.++++++.+..  .+...+..|+..+-.. ...||+|=.   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~lm~~~~~~fd~IDi---  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANALLHELHRAFDVIDI---  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHHHHHhcCCCccEEec---
Confidence            789999999999888877764443 899999999999999999988732  2455555676554322 367887753   


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                       ..+-.+..++....+.++.||++.+.-
T Consensus       128 -DPFGSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         128 -DPFGSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             -CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence             334455667888888999999998853

>PRK13699 putative methylase; Provisional

Probab=95.46  E-value=0.05  Score=45.30  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=34.0

Q ss_pred             EEEecccCcC--CCCCCcccEEEEc--cc--ccC-----c------ccHHHHHHHHHHcccCCcEEEEE
Q 022248          179 KFLQAVGEAI--PVSDASVDAVVGT--LV--LCS-----V------KDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       179 ~~~~~d~~~~--~~~~~~~D~v~~~--~~--l~~-----~------~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      +++.+|..++  .++++++|+|+..  +.  ...     +      .-....+.++.|+|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4566776553  4678888888864  10  000     0      11246789999999999988874

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=95.43  E-value=0.08  Score=47.88  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=69.8

Q ss_pred             CCCCeEEEECCCCCh--hHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--c--CcCCCC-CCcc
Q 022248          124 GKAKKVLEIGIGTGP--NLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--G--EAIPVS-DASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~--~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~--~~~~~~-~~~~  195 (300)
                      ..+..++|+|.|.|.  ++..+.. .....++.||.+..|........+...-   .-..+...  +  ..+|.. .+.|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~---~g~~~v~~~~~~r~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH---IGEPIVRKLVFHRQRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh---cCchhccccchhcccCCCCcccce
Confidence            345678888887663  3333332 3456899999999999998887765110   00111111  1  123433 3569


Q ss_pred             cEEEEcccccCcccHH---H-HHHHHHHcccCCcEEEEEecccCCC
Q 022248          196 DAVVGTLVLCSVKDVD---M-TLQEVRRVLKPGGIYLFVEHVAAKD  237 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~---~-~l~~~~~~LkpgG~l~~~~~~~~~~  237 (300)
                      |+|++.+.++++.+..   . .-....+..++||.+++++......
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g  321 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG  321 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence            9999999999886542   2 2344556668999999998665443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.41  E-value=0.25  Score=43.49  Aligned_cols=109  Identities=17%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC---C--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD---T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~---~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------  189 (300)
                      .++.+|||.+...|.-+.++.+.   .  ...+++-|.+..-+......++...-  ++..+...++...|         
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccccccCch
Confidence            58899999999999988888762   1  23899999999988888877754432  34555544443322         


Q ss_pred             CCCCcccEEEEc------ccccCccc-----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          190 VSDASVDAVVGT------LVLCSVKD-----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       190 ~~~~~~D~v~~~------~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+...||-|+|.      ..+...++                 ...++.+..++||+||.++.++...
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            234579999862      11211111                 1357899999999999999987543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.36  E-value=0.02  Score=48.67  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=72.4

Q ss_pred             CCCeEEEECCCCChhHH-HhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .+..|+|+=.|.|+++. .+.......|+++|.++..++..++.++.+++. ++...+.+|-.. +-++...|-|.....
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~-~~~~~~AdrVnLGLl  271 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRN-PKPRLRADRVNLGLL  271 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhccccc-cCccccchheeeccc
Confidence            55789999999999998 555556678999999999999999999887654 345555666433 335677888887553


Q ss_pred             ccCcccHHHHHHHHHHcccC-Cc-EEEEEecccC
Q 022248          204 LCSVKDVDMTLQEVRRVLKP-GG-IYLFVEHVAA  235 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~Lkp-gG-~l~~~~~~~~  235 (300)
                      ..    -++-.--...+||| || .+-+-+.+..
T Consensus       272 PS----se~~W~~A~k~Lk~eggsilHIHenV~~  301 (351)
T KOG1227|consen  272 PS----SEQGWPTAIKALKPEGGSILHIHENVKD  301 (351)
T ss_pred             cc----cccchHHHHHHhhhcCCcEEEEeccccc
Confidence            33    33333455667777 44 4444444433

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.14  E-value=0.19  Score=44.42  Aligned_cols=123  Identities=12%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~  202 (300)
                      ..+++|+-||.|.+...+......-+.++|+++.+++.-+.+..       ...++..|...+.   +....+|+++...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-------~~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-------HGDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-------CCceeechHhhcChhhccccCCCEEEeCC
Confidence            46899999999999888765444457899999999888877752       2445666665443   1112799999765


Q ss_pred             cccCc---------ccHH----HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          203 VLCSV---------KDVD----MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       203 ~l~~~---------~~~~----~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      -...+         .|..    ..+.++...++|  .+++.+++..-.       ..           .....+++.+.|
T Consensus        76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~-------~~-----------~~~~~~~i~~~L  135 (328)
T COG0270          76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLL-------SS-----------KGQTFDEIKKEL  135 (328)
T ss_pred             CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHH-------hc-----------CchHHHHHHHHH
Confidence            44433         2332    235666666788  777777655321       10           112335888999


Q ss_pred             HhcCCc
Q 022248          270 SEAGFS  275 (300)
Q Consensus       270 ~~aGf~  275 (300)
                      ++.||.
T Consensus       136 ~~~GY~  141 (328)
T COG0270         136 EELGYG  141 (328)
T ss_pred             HHcCCc
Confidence            999997

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.12  E-value=0.07  Score=49.63  Aligned_cols=97  Identities=21%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----------------
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----------------  187 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----------------  187 (300)
                      ++.++|=+|+|. |..+..++...+..++++|.++..++.+++.    +.     +++..+..+                
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga-----~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA-----EFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC-----eEEeccccccccccccceeecCHHH
Confidence            568999999985 4555556666778899999999987776652    21     222222110                


Q ss_pred             -------CCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          188 -------IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       188 -------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                             ++-.-..+|+|+..-.+..-+.+.-+.+++.+.+|||++++=+
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence                   1111256999987664544444445678899999999987743

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.07  E-value=0.028  Score=42.12  Aligned_cols=86  Identities=22%  Similarity=0.291  Sum_probs=59.1

Q ss_pred             CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcccEEEEcccccCcc
Q 022248          135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASVDAVVGTLVLCSVK  208 (300)
Q Consensus       135 G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~  208 (300)
                      |.|.++..+++..+.+++++|.++.-++.+++.    |.    -.++..+-.++     . .....+|+|+-.-.     
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----   67 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE----SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc----cccccccccccccccccccccccceEEEEecC-----
Confidence            457788888887779999999999988887653    21    12222221111     1 23357999986432     


Q ss_pred             cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          209 DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       209 ~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                       ....++....+|+++|.++++....
T Consensus        68 -~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 -SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -cHHHHHHHHHHhccCCEEEEEEccC
Confidence             2346799999999999999998665

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.00  E-value=0.25  Score=43.38  Aligned_cols=95  Identities=22%  Similarity=0.328  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~  197 (300)
                      .++.+||..|+| .|..+..+++..+.++++++.++...+.+++    .+..  .  ++...-...     ....+.+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~--~--~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD--E--VLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC--E--EEcCCCcCHHHHHHHhcCCCceE
Confidence            456788888876 4777788887778889999999988777754    2221  1  111110000     123457999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+.....      ...+.++.+.|+++|.++....
T Consensus       236 vid~~g~------~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         236 IFDFVGT------QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             EEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence            8854211      2357889999999999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.96  E-value=0.14  Score=45.41  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=91.1

Q ss_pred             hhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHH
Q 022248           90 DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTA  167 (300)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~  167 (300)
                      .-++++|..+-   .+.|++.....+..+.+++. .++....|+|+|.|.+...++.. ....-+|+++.+..-+.+...
T Consensus       159 ~~L~~hYk~~s---s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~  235 (419)
T KOG3924|consen  159 AILNQHYKSFS---SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELN  235 (419)
T ss_pred             HHHHHhhcccc---ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHH
Confidence            34444555432   25577777777788888776 67889999999999988888763 233566777655544444332


Q ss_pred             -------HHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          168 -------AVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       168 -------~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                             .+..|-....+..+.+++....   .-....++|+++++...- +...-+.++..-+++|-+++-......
T Consensus       236 ~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  236 KEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEeccccccc
Confidence                   2233433346777777765432   123567888887766543 333335688888999999988765443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.73  E-value=0.37  Score=42.30  Aligned_cols=120  Identities=17%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             EEEECCCCChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEcccccC
Q 022248          129 VLEIGIGTGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS  206 (300)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~~  206 (300)
                      |+|+-||.|.+...+... +.+ +.++|+++.+.+..+.+..       . .++.+|+.++.. .-..+|+++...-...
T Consensus         1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-------N-KVPFGDITKISPSDIPDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence            689999999999888654 455 5679999999888877642       2 345567666532 1135899986533322


Q ss_pred             c---------ccHH-HHHHHHHHcc---cCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          207 V---------KDVD-MTLQEVRRVL---KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       207 ~---------~~~~-~~l~~~~~~L---kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      +         .|.. .++.++.+++   +|.  +++++.+..-       +..          ........+.+.|++.|
T Consensus        72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l-------~~~----------~~~~~~~~i~~~l~~~G  132 (315)
T TIGR00675        72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGL-------VSH----------DKGRTFKVIIETLEELG  132 (315)
T ss_pred             cchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHH-------Hhc----------ccchHHHHHHHHHHhCC
Confidence            2         2322 3444444444   664  6666654421       000          00011236777888889


Q ss_pred             CcE
Q 022248          274 FSS  276 (300)
Q Consensus       274 f~~  276 (300)
                      |.+
T Consensus       133 Y~v  135 (315)
T TIGR00675       133 YKV  135 (315)
T ss_pred             CEE
Confidence            875

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.67  E-value=0.22  Score=43.98  Aligned_cols=43  Identities=16%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHH
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~  167 (300)
                      +-..++|+|.|.|+++..+.-..+..|.+||-|....+.|++.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            4578999999999999999877899999999998888777663

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.65  E-value=1  Score=39.06  Aligned_cols=165  Identities=11%  Similarity=0.056  Sum_probs=99.0

Q ss_pred             HHHHHHHHhhcCC-CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCC-
Q 022248          113 GYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIP-  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~-  189 (300)
                      ++..+.+...... -..|+-+|||--.-...+-...+..|+-+|. |++++.=++.+.+.+.. +.+..++..|+.+-. 
T Consensus        79 r~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw  157 (297)
T COG3315          79 RYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDW  157 (297)
T ss_pred             HHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccch
Confidence            3444444433323 4789999999754443333233578888887 55666666667766543 337889999997432 


Q ss_pred             --------CCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCC--ch--HHHHHHHhhhh-hh-h
Q 022248          190 --------VSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKD--GT--FLKFWQNVVDP-LQ-Q  253 (300)
Q Consensus       190 --------~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~--~~~~~~~~~~~-~~-~  253 (300)
                              +..+.-=++++-.++.+++..  +.++..|...+.||-.+++........  ..  ..... ..... .. .
T Consensus       158 ~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  236 (297)
T COG3315         158 PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARK-TMRGEDLDRG  236 (297)
T ss_pred             HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhh-hccccccccc
Confidence                    334555678888888888643  578999999999998888865311100  00  00000 00000 00 0


Q ss_pred             hhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          254 IVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      ..........++...|.+.||..+..
T Consensus       237 e~~~~~~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         237 ELVYFGDDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             cceeccCCHHHHHHHHHhcCEEEEec
Confidence            01112234579999999999997766

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=2  Score=37.15  Aligned_cols=166  Identities=10%  Similarity=0.094  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcC-----------------
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAG-----------------  172 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~-----------------  172 (300)
                      ..+..++... .....|+.+|||.-.+...|...   ....++=||.++........+.+..-                 
T Consensus        76 ~~v~~Fl~~~-~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~  154 (335)
T KOG2918|consen   76 HAVRAFLEQT-DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSG  154 (335)
T ss_pred             HHHHHHHHhc-CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCc
Confidence            3344444442 35678999999999888888763   34678888888777666622111000                 


Q ss_pred             --CCCCCEEEEecccCcCC----------CCCCcccEEEEcccccCcccHH--HHHHHHHHcccCCcEEEEEecccCCCc
Q 022248          173 --LPLTNFKFLQAVGEAIP----------VSDASVDAVVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDG  238 (300)
Q Consensus       173 --~~~~~~~~~~~d~~~~~----------~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~  238 (300)
                        +..++...+.+|+.++.          ...+-.-++++-.+|.+++...  ..++.+.... +.+.+++.+... +..
T Consensus       155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~-~~D  232 (335)
T KOG2918|consen  155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQIN-PND  232 (335)
T ss_pred             ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccC-CCC
Confidence              00112333444443221          1112223344444555664332  2344433333 566777777655 344


Q ss_pred             hHHHHHHHhhhhhhhhhc--CCcccchHHHHHHHhcCCcEEEEee
Q 022248          239 TFLKFWQNVVDPLQQIVS--DGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      .+...+...+...+-..+  ..+.+.+..+..+.++||+.+.+.+
T Consensus       233 ~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D  277 (335)
T KOG2918|consen  233 RFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD  277 (335)
T ss_pred             hHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence            455555544443322222  2466788999999999999877754

>PTZ00357 methyltransferase; Provisional

Probab=94.47  E-value=0.76  Score=43.96  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=63.3

Q ss_pred             CeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHH-HHcCCC------CCCEEEEecccCcCCCCC--
Q 022248          127 KKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA-VAAGLP------LTNFKFLQAVGEAIPVSD--  192 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~-~~~~~~------~~~~~~~~~d~~~~~~~~--  192 (300)
                      ..|+-+|+|-|-+.....+     ....++++|+-++.++.....+. ....+.      ...|+++..|+..+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            3689999999987766554     24578999999966544444332 222332      136899999998874321  


Q ss_pred             ---------CcccEEEEcccccCccc---HHHHHHHHHHcccC----CcE
Q 022248          193 ---------ASVDAVVGTLVLCSVKD---VDMTLQEVRRVLKP----GGI  226 (300)
Q Consensus       193 ---------~~~D~v~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~  226 (300)
                               +.+|+||+= .|-.+.|   -.+.|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                     379999961 2222222   14677777777776    775

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.28  E-value=0.17  Score=42.57  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~  197 (300)
                      .++.+||..|+|. |..+..+++..+.++++++.++...+.+++.    +..    .++...-...     ....+.+|+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD----HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc----eeccCCcCCHHHHHHHhcCCCCCE
Confidence            4678999999985 6666667766778999999998776666432    211    1111100000     112357999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++....-.      ..+..+.+.|+++|.++......
T Consensus       205 vi~~~~~~------~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         205 VIDAVGGP------ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             EEECCCCH------HHHHHHHHhcccCCEEEEEccCC
Confidence            98643211      34677888999999999876443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.22  E-value=1.1  Score=35.30  Aligned_cols=128  Identities=11%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             ECCCCChhHHHhHhC-C-CceEEEE--cCCHHHHHHHH---HHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEE
Q 022248          132 IGIGTGPNLKYYAAD-T-DVQVLGV--DPNRKMEKYAQ---TAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (300)
Q Consensus       132 iGcG~G~~~~~l~~~-~-~~~~~gi--D~s~~~~~~a~---~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~  200 (300)
                      ||=|.=.++..|++. . ...+++.  |..+...+...   .+++...-. .-......|+.++.    ...+.||.|+.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccccCCcCCEEEE
Confidence            555555667777763 2 4445544  54444443332   333322110 11223555776653    35689999998


Q ss_pred             cccccC-----c-cc-------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248          201 TLVLCS-----V-KD-------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGN  267 (300)
Q Consensus       201 ~~~l~~-----~-~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (300)
                      ++-...     - .+       ...+++.+.++|+++|.+.+.-....+-    ..|                   .+.+
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py----~~W-------------------~i~~  138 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY----DSW-------------------NIEE  138 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC----ccc-------------------cHHH
Confidence            763332     0 01       1357899999999999999976544330    001                   5667


Q ss_pred             HHHhcCCcEEEEeeec
Q 022248          268 NISEAGFSSVELGNAF  283 (300)
Q Consensus       268 ~l~~aGf~~v~~~~~~  283 (300)
                      +-+++||..++.....
T Consensus       139 lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  139 LAAEAGLVLVRKVPFD  154 (166)
T ss_pred             HHHhcCCEEEEEecCC
Confidence            8888999987776443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.11  E-value=0.2  Score=44.47  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccCcCCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ++.+||=.||| .|.++.++++..+. +++++|.++..++.+++.    |..  .+ .....+..+.....+.+|+|+-.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~g~~D~vid~  242 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GAD--KLVNPQNDDLDHYKAEKGYFDVSFEV  242 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCc--EEecCCcccHHHHhccCCCCCEEEEC
Confidence            57788888874 45566666766666 699999999888777652    321  11 11111111111112458998854


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..     . ...+....+.|++||+++++..
T Consensus       243 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        243 SG-----H-PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CC-----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence            32     1 2356788899999999999874

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.08  E-value=0.43  Score=39.54  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             cCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHH----HHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCC
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRK----MEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDA  193 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~  193 (300)
                      ..++.+||-+|.+.|....++.+  .+..-|++++.|+.    .+.+|+++        +|+.-+..|+....   ..-+
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArhP~KYRmlVg  225 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARHPAKYRMLVG  225 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCCchheeeeee
Confidence            36899999999999998888876  36678999998874    44444443        57877888875431   1123


Q ss_pred             cccEEEEcccccCcccHH-HHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      -+|+|++.-   .-+|.. -+.-+....||+||.++++-...
T Consensus       226 mVDvIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisikan  264 (317)
T KOG1596|consen  226 MVDVIFADV---AQPDQARIVALNAQYFLKNGGHFVISIKAN  264 (317)
T ss_pred             eEEEEeccC---CCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence            567666532   113332 24556778899999999976443

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.71  E-value=1.6  Score=35.59  Aligned_cols=103  Identities=19%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             CCCeEEEECCCCCh--hHHHhH---hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEE
Q 022248          125 KAKKVLEIGIGTGP--NLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAV  198 (300)
Q Consensus       125 ~~~~vLDiGcG~G~--~~~~l~---~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v  198 (300)
                      ..+.|+++.|+.|.  .+..|+   ++.+.+++.|-+.+.-+...++.+...++. +.++|+.++. +.+--.-...|++
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~~~~~iDF~  119 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMPGLKGIDFV  119 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHhhccCCCEE
Confidence            55789999766442  344443   257789999999988888888888877775 4679988874 3322122468888


Q ss_pred             EEcccccCcccHHHHHHHHHHcc--cCCcEEEEEeccc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVL--KPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~  234 (300)
                      +...-      .+++.+++.+.+  .|.|-+++..+..
T Consensus       120 vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~Na~  151 (218)
T PF07279_consen  120 VVDCK------REDFAARVLRAAKLSPRGAVVVCYNAF  151 (218)
T ss_pred             EEeCC------chhHHHHHHHHhccCCCceEEEEeccc
Confidence            86542      222233444444  4567777766543

The function of this family is unknown.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=3.6  Score=34.43  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----CCCCCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~  195 (300)
                      .+...+|+|+|+..-+..|.+.     ....++.||+|...++...+.+...... -.+.-+++|.+.    +| ..+.=
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~-~~~~R  155 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELP-RGGRR  155 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhccc-CCCeE
Confidence            5789999999999877776652     3368999999999988776665544322 135556666643    23 11222


Q ss_pred             cEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      =.++....+-++.  +...++..+...|+||-++++-.
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence            2233345555552  34578999999999999999854

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.46  E-value=0.2  Score=40.71  Aligned_cols=107  Identities=15%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHH-------------------------------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV-------------------------------  169 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~-------------------------------  169 (300)
                      ..+.++.|-.||.|+++.-+.-   ..-..++|-|+++.+++.|++++.                               
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4567899999999988766532   223579999999999999998554                               


Q ss_pred             ----------HcCCCCCCEEEEecccCcCC-----CCCCcccEEEEcc----cccCcc-----cHHHHHHHHHHcccCCc
Q 022248          170 ----------AAGLPLTNFKFLQAVGEAIP-----VSDASVDAVVGTL----VLCSVK-----DVDMTLQEVRRVLKPGG  225 (300)
Q Consensus       170 ----------~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~----~l~~~~-----~~~~~l~~~~~~LkpgG  225 (300)
                                ..|-. ......++|+.+..     ......|+|+...    ...|-.     ....+|..++.+|-+++
T Consensus       130 sA~RL~~~l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s  208 (246)
T PF11599_consen  130 SADRLRERLAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS  208 (246)
T ss_dssp             HHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred             HHHHHHHHHHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence                      11111 23566777765521     1223469988632    111211     13578999999995566


Q ss_pred             EEEEEe
Q 022248          226 IYLFVE  231 (300)
Q Consensus       226 ~l~~~~  231 (300)
                      ++.+++
T Consensus       209 VV~v~~  214 (246)
T PF11599_consen  209 VVAVSD  214 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            666644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=93.34  E-value=0.084  Score=39.40  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CEEEEecccCc-CCCCCCcccEEEEcc-cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh
Q 022248          177 NFKFLQAVGEA-IPVSDASVDAVVGTL-VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ  252 (300)
Q Consensus       177 ~~~~~~~d~~~-~~~~~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  252 (300)
                      .+++..+|+.+ ++--+..||+|+... +...-+++  ..+++++.++++|||.+.....                    
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~--------------------   91 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS--------------------   91 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec--------------------
Confidence            44556667644 232237899998753 33322333  5789999999999998877441                    


Q ss_pred             hhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          253 QIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                               ...+++.|.++||++.+....
T Consensus        92 ---------a~~Vr~~L~~aGF~v~~~~g~  112 (124)
T PF05430_consen   92 ---------AGAVRRALQQAGFEVEKVPGF  112 (124)
T ss_dssp             ---------BHHHHHHHHHCTEEEEEEE-S
T ss_pred             ---------hHHHHHHHHHcCCEEEEcCCC
Confidence                     126789999999998766533

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.30  E-value=0.083  Score=45.90  Aligned_cols=108  Identities=22%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHH-------HHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK-------YAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~-------~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~  195 (300)
                      .++.-|+|--.|||.++...+ +.|+.++|.||+-.++.       ..+.+++..+....-+.+..+|...-++ ....|
T Consensus       207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            688999999999999887776 46889999999998887       2355666666543445677888877664 35689


Q ss_pred             cEEEEcc------------------------cccCccc---------HHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTL------------------------VLCSVKD---------VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~------------------------~l~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |.|+|.-                        -..|.+.         ....+.-..+.|.-||++++--+
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            9999831                        0112221         13457778899999999998654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.29  E-value=1.3  Score=32.20  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             CCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEEcccccC
Q 022248          134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGTLVLCS  206 (300)
Q Consensus       134 cG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~~  206 (300)
                      ||.|.++..+++   ..+..++.+|.+++.++.+++.         .+.++.+|..+..    ..-+..|.|++..-   
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVILTD---   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEESS---
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEccC---
Confidence            667778888776   3445899999999988887754         3678889886532    22356787776432   


Q ss_pred             cccH-HHHHHHHHHcccCCcEEEEEe
Q 022248          207 VKDV-DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       207 ~~~~-~~~l~~~~~~LkpgG~l~~~~  231 (300)
                       .+. ...+....+-+.|...+++..
T Consensus        72 -~d~~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   72 -DDEENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             -SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             -CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence             122 224455666677887777754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.03  E-value=0.26  Score=40.96  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-----CCCEEEEecccCc-CCCCCCcccEE
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG--LP-----LTNFKFLQAVGEA-IPVSDASVDAV  198 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~--~~-----~~~~~~~~~d~~~-~~~~~~~~D~v  198 (300)
                      .+|||.-+|-|.-+.-++. .+.+|++++-|+.+....+.-++...  ..     ..+++++.+|..+ +..++++||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            4899999999998888875 47799999999987766665443321  11     1378999999876 45567899999


Q ss_pred             EEcccc
Q 022248          199 VGTLVL  204 (300)
Q Consensus       199 ~~~~~l  204 (300)
                      .+.=.+
T Consensus       156 Y~DPMF  161 (234)
T PF04445_consen  156 YFDPMF  161 (234)
T ss_dssp             EE--S-
T ss_pred             EECCCC
Confidence            985433

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.98  E-value=1.3  Score=38.57  Aligned_cols=99  Identities=19%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC------CCCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI------PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~------~~~~~  193 (300)
                      +.+.+||=+|+|. |.++...++ ....+++.+|+++..++.|++ +   |.  +.+.......  ..+      .....
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--TVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--eEEeeccccccHHHHHHHHHhhcccc
Confidence            5788999999995 555555555 355689999999999999998 3   21  1222222111  110      12335


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+|+.+-...++      ..++.....+++||.++++.+..
T Consensus       242 ~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  242 QPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             CCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCC
Confidence            588888655443      34677788899999988887654

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.79  E-value=0.099  Score=47.62  Aligned_cols=102  Identities=19%  Similarity=0.146  Sum_probs=77.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v  198 (300)
                      ++.+|||.=|++|.-++..+..  ...++++-|.++..++..+++++.++.. +.++....|+..+    +-....||+|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHhccccccccceE
Confidence            5678999999999888877763  3457999999999999999999887654 4566666676543    2335789998


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -.    ..+.....+|....+.++.||.|.+..
T Consensus       188 DL----DPyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  188 DL----DPYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            75    233344567888999999999999854

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.66  E-value=0.5  Score=40.76  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=70.7

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|.=||.|. |..+..++-..++.|+.+|.|..-+++....+.      .++...-.+...+...-...|+||..-.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIgaVL  240 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIGAVL  240 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence            345677788774 556666666788999999999988877766542      3566665555444333357899997544


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      +--...+.-+.+++...+|||++++=+
T Consensus       241 IpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         241 IPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             ecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            444456677889999999999988754

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.63  E-value=1.4  Score=37.04  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             CCCeEEEECCCCChhHHHhH---hC---CCceEEEEcCCH--------------------------HHHHHHHHHHHHcC
Q 022248          125 KAKKVLEIGIGTGPNLKYYA---AD---TDVQVLGVDPNR--------------------------KMEKYAQTAAVAAG  172 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~---~~---~~~~~~giD~s~--------------------------~~~~~a~~~~~~~~  172 (300)
                      -++.|+|.||-.|..+..++   +.   .+-++++.|.-+                          ..++..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            45789999999997665442   21   344577776321                          12333444444445


Q ss_pred             CCCCCEEEEecccCc-CC-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          173 LPLTNFKFLQAVGEA-IP-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       173 ~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +..+++.++.+.+.+ +| .+.+.+-++.+-.  .........|..++..|.|||++++-+...
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            444689999999854 44 2334444444332  122345678999999999999999977544

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=92.55  E-value=1.1  Score=39.34  Aligned_cols=94  Identities=21%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcCCCCCCcccEEE
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAIPVSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D~v~  199 (300)
                      ++.+||-.|||. |..+..+++..+. .+++++.++...+.+++.    +..    .++...   ...+....+.+|+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~~~~~~~~~~~~~~~vd~vl  236 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ETVNLARDPLAAYAADKGDFDVVF  236 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EEEcCCchhhhhhhccCCCccEEE
Confidence            577888888765 6666777776676 799999988877755442    221    112111   111211224589998


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .....      ...++.+.+.|+++|+++....
T Consensus       237 d~~g~------~~~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         237 EASGA------PAALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             ECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence            64321      2346888999999999998753

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.38  E-value=0.84  Score=39.81  Aligned_cols=88  Identities=17%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ++.++|=+||| .|.++.++++..+.+ ++++|.++..++.+...    .       ++  |..+.  ....+|+|+-..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-------~i--~~~~~--~~~g~Dvvid~~  208 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-------VL--DPEKD--PRRDYRAIYDAS  208 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-------cc--Chhhc--cCCCCCEEEECC
Confidence            46678888875 566777777755665 67789888766655431    1       11  11110  134689988543


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .-      ...+..+.+.|+++|+++++...
T Consensus       209 G~------~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       209 GD------PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             CC------HHHHHHHHHhhhcCcEEEEEeec
Confidence            21      23467888999999999987753

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.34  E-value=0.95  Score=40.26  Aligned_cols=98  Identities=11%  Similarity=0.107  Sum_probs=59.3

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcC---CHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDP---NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+||=+|+| .|.++.++++..+.++++++.   ++.-++.+++    .|..  .+.....+..+.. ..+.+|+|+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~--~v~~~~~~~~~~~-~~~~~d~vi  243 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT--YVNSSKTPVAEVK-LVGEFDLII  243 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE--EecCCccchhhhh-hcCCCCEEE
Confidence            356788888885 356677777767778999986   5666555543    2321  1111111111101 124689888


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      -...-      ...+.+..+.|++||.++++....
T Consensus       244 d~~g~------~~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         244 EATGV------PPLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             ECcCC------HHHHHHHHHHccCCcEEEEEecCC
Confidence            64321      225688899999999999876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=91.77  E-value=1.7  Score=38.43  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+||=+||| .|.++..+++.  .+.+++++|.++.-++.+++    .+    ....+    ..+. .+..+|+|+-
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----~~~~~----~~~~-~~~g~d~viD  228 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----ETYLI----DDIP-EDLAVDHAFE  228 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----ceeeh----hhhh-hccCCcEEEE
Confidence            467899999985 34445555553  35689999999887777754    11    11111    1111 1124898885


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .-.-.   .....+....+.|++||+++++..
T Consensus       229 ~~G~~---~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         229 CVGGR---GSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             CCCCC---ccHHHHHHHHHhCcCCcEEEEEee
Confidence            33210   123467888999999999998774

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.71  E-value=1.8  Score=38.15  Aligned_cols=91  Identities=12%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+||=.|+| .|.++..+++..+..+++++.++.-.+.+++.    |..  .  ++  +..+.  ..+.+|+++...
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~--~--vi--~~~~~--~~~~~d~~i~~~  231 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA--S--AG--GAYDT--PPEPLDAAILFA  231 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc--e--ec--ccccc--CcccceEEEECC
Confidence            467889988864 44555666666778899999998877766553    321  1  11  11111  124588766433


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..      ...+....+.|++||++++...
T Consensus       232 ~~------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       232 PA------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             Cc------HHHHHHHHHhhCCCcEEEEEec
Confidence            21      2357888899999999998775

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10458 DNA cytosine methylase; Provisional

Probab=91.31  E-value=2.8  Score=38.87  Aligned_cols=43  Identities=14%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHH
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA  168 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~  168 (300)
                      ..+++|+-||.|.+...+.......+.++|+++.+.+.-+.+.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            4689999999999988886544445788999998877776654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.10  E-value=1.6  Score=37.37  Aligned_cols=95  Identities=21%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-cc-CcC-C-CCCCcccE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VG-EAI-P-VSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~-~~~-~-~~~~~~D~  197 (300)
                      .++.+||=+|+| .|.++..+++..+.. ++++|.++.-++.+++.    +..    .++.. +. ..+ . .....+|+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT----ALAEPEVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc----EecCchhhHHHHHHHhCCCCCCE
Confidence            367788888874 344555566656665 89999988877766553    221    11110 10 000 0 12245898


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+-...      ....+....+.|+|+|++++...
T Consensus       191 vid~~G------~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       191 ALEFSG------ATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             EEECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence            885321      12356788899999999998874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=90.82  E-value=1.1  Score=40.95  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-------CCCCCCcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-------IPVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~~  195 (300)
                      ..+..+|-+|-|.|.+...+.. .+..+++++++.+.+++.|++.+.-..-  .+..+...|...       -.-.+..|
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHHHHHHhhccccccCC
Confidence            3567899999999998888755 4668999999999999999987532211  122222233211       11256789


Q ss_pred             cEEEEcc-c--ccCc--cc----HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          196 DAVVGTL-V--LCSV--KD----VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       196 D~v~~~~-~--l~~~--~~----~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++...- .  .+.+  +.    ...++..+..+|.|.|.+++--.++
T Consensus       372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            9998521 1  2222  11    1457899999999999998754333

>PRK11524 putative methyltransferase; Provisional

Probab=90.50  E-value=0.32  Score=42.01  Aligned_cols=55  Identities=16%  Similarity=0.182  Sum_probs=38.0

Q ss_pred             CEEEEecccCcC--CCCCCcccEEEEc--ccc--c------------CcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          177 NFKFLQAVGEAI--PVSDASVDAVVGT--LVL--C------------SVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       177 ~~~~~~~d~~~~--~~~~~~~D~v~~~--~~l--~------------~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +..++++|..+.  .+++++||+|++.  +.+  .            +..-....+.++.++|||||.+++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            456788888664  4667899999983  211  0            00112468899999999999999864

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.16  E-value=2.7  Score=37.42  Aligned_cols=99  Identities=18%  Similarity=0.171  Sum_probs=59.1

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v  198 (300)
                      .++.+||=.|+| .|.++.++++..+. +++++|.++...+.+++.    +.. .-+.....+.. .+ . .....+|+|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~v  249 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT-HTVNSSGTDPVEAIRALTGGFGADVV  249 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc-eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence            467889988874 34556666766676 499999999887777542    321 00111111110 00 0 122358988


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +-.-.     . ...+....+.|++||+++++...
T Consensus       250 id~~g-----~-~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       250 IDAVG-----R-PETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             EECCC-----C-HHHHHHHHHHhccCCEEEEECCC
Confidence            85322     1 23467778899999999987753

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.03  E-value=14  Score=33.33  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccccC
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS  206 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  206 (300)
                      .+||=++-.-|.++..++.... . ...| |--.-...+++++.+++..+.+++.... ..+|   +.+|+|+... .-.
T Consensus        46 ~~~~i~nd~fGal~~~l~~~~~-~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~---~~~d~vl~~~-PK~  117 (378)
T PRK15001         46 GPVLILNDAFGALSCALAEHKP-Y-SIGD-SYISELATRENLRLNGIDESSVKFLDST-ADYP---QQPGVVLIKV-PKT  117 (378)
T ss_pred             CCEEEEcCchhHHHHHHHhCCC-C-eeeh-HHHHHHHHHHHHHHcCCCcccceeeccc-cccc---CCCCEEEEEe-CCC
Confidence            3799999999999999985322 1 2234 2223334456677777764456555332 2232   4589888643 111


Q ss_pred             cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh
Q 022248          207 VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD  249 (300)
Q Consensus       207 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  249 (300)
                      ..-.+..+..+..+|.||+.+++.+....-.......+.+.+.
T Consensus       118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k~l~  160 (378)
T PRK15001        118 LALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG  160 (378)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHHHhC
Confidence            2233556888899999999988777555443334444544443

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.91  E-value=3.8  Score=36.04  Aligned_cols=99  Identities=21%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCCCcccEEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~  199 (300)
                      .++.+||=+|+| .|.++..+++..+.+ ++++|.++...+.+++.    +.. .-+.....+.+.+ . .....+|+|+
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~-~~i~~~~~~~~~~~~~~~~~~~d~vi  236 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD-FVINSGQDDVQEIRELTSGAGADVAI  236 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-EEEcCCcchHHHHHHHhCCCCCCEEE
Confidence            457788888764 344555566666777 99999998877776542    321 0011101111111 1 1224699998


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      -...      ....+....+.|+++|.+++....
T Consensus       237 d~~g------~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         237 ECSG------NTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             ECCC------CHHHHHHHHHHhhcCCEEEEEcCC
Confidence            5321      122456778899999999987643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=89.32  E-value=0.47  Score=42.58  Aligned_cols=63  Identities=16%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             hcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG  185 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~  185 (300)
                      +-.++..|.|+-||.|-+...++.+ +..|++-|.++++++..+.+++-+.+...+++.+..|+
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda  308 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA  308 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence            4468889999999999999888754 58999999999999999999887777655577776665

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.12  E-value=2.6  Score=36.85  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=59.0

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~  197 (300)
                      .++.+||-+|+| .|..+..+++..+.+ +++++.++...+.+++.    +..    .++..+-...    ....+.+|+
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~vd~  229 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT----ETVDPSREDPEAQKEDNPYGFDV  229 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe----EEecCCCCCHHHHHHhcCCCCcE
Confidence            466789988864 355666666666766 88999988877766432    221    1222111110    113356999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ++....      ....+.++.+.|+++|+++....
T Consensus       230 v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         230 VIEATG------VPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             EEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence            996421      12356888899999999988764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.04  E-value=3.1  Score=36.38  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~  201 (300)
                      .++.+||-.|+| .|..+..+++..+.++++++.++...+.+++.    +..    .++...-.... ...+.+|+++..
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~d~vi~~  232 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD----EVVDSGAELDEQAAAGGADVILVT  232 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc----EEeccCCcchHHhccCCCCEEEEC
Confidence            456788888886 66666667776788999999999887776432    211    11111100000 012468988854


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..-      ...+..+.+.|+++|.++....
T Consensus       233 ~~~------~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         233 VVS------GAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             CCc------HHHHHHHHHhcccCCEEEEECC
Confidence            211      2246788899999999998753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.02  E-value=0.86  Score=40.98  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|+=+|+| .|..+...+...+.+++.+|.++..++.+....   +   ..+.....+.+.+.-.-..+|+|+..-.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g---~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G---GRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C---ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            45679999887 445555555556779999999887665554432   1   1111111111111111146899997532


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ....+.+.-+.+++.+.++||++++-+.
T Consensus       240 ~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       240 IPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            2111111112366667789998777643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.00  E-value=0.77  Score=41.29  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             CCEEEEecccCcC--CCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecc
Q 022248          176 TNFKFLQAVGEAI--PVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       176 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++++++.+++.+.  ..+++++|.++....+.++++.  .+.++++.+.++|||++++=...
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~  336 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA  336 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence            6899999998774  2467999999999999999653  57899999999999999996543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=88.94  E-value=2.2  Score=38.27  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-CCCCCccc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~~~~~~~D  196 (300)
                      .++.+||=.|+| .|.++..+++..+. +++++|.++.-++.+++.    +..    .++...-++    + ....+.+|
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~i~~~~~~g~d  261 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT----ATVNAGDPNAVEQVRELTGGGVD  261 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc----eEeCCCchhHHHHHHHHhCCCCC
Confidence            456778888874 34556666666676 699999999887777542    321    111111111    1 01123689


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+-...      ....+....+.|+++|.+++....
T Consensus       262 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         262 YAFEMAG------SVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             EEEECCC------ChHHHHHHHHHHhcCCEEEEEccC
Confidence            9985321      123567788899999999987643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.80  E-value=3.5  Score=36.64  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCc-C-CCCCCcccEE
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEA-I-PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~~D~v  198 (300)
                      .++.+||=.|+  |.|.++.++++..+.++++++.++...+.+++.   .|.. .-+..... +... + ....+.+|+|
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~v  232 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPEGIDIY  232 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCCCcEEE
Confidence            46788988887  477888888887788999999888776666532   2321 01111111 1111 1 1112468988


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +-...       ...+....+.|+++|+++++..
T Consensus       233 ~d~vG-------~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        233 FDNVG-------GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             EECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence            85322       1356888999999999998764

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=88.60  E-value=4.5  Score=35.50  Aligned_cols=97  Identities=18%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEeccc-CcC--CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVG-EAI--PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~-~~~--~~~~~~~D~v  198 (300)
                      .++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++.    +..  .+ .....+. +.+  ...+..+|++
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~--~v~~~~~~~~~~~l~~~~~~~~vd~v  231 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD--DTINVGDEDVAARLRELTDGEGADVV  231 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC--EEecCcccCHHHHHHHHhCCCCCCEE
Confidence            4677899888763 6677777777788999998888777766432    211  11 1111111 011  0133568999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....-      ...+.++.+.|+++|.++....
T Consensus       232 ld~~g~------~~~~~~~~~~l~~~G~~i~~g~  259 (337)
T cd08261         232 IDATGN------PASMEEAVELVAHGGRVVLVGL  259 (337)
T ss_pred             EECCCC------HHHHHHHHHHHhcCCEEEEEcC
Confidence            864211      2346888999999999987653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=88.59  E-value=4.2  Score=34.65  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~  200 (300)
                      ..++.|+-+|- .-..+.+++- ....++..+|+++..++...+.+++.|+.  +++.+.-|+.+ +| --...||+++.
T Consensus       151 L~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~--~ie~~~~Dlr~plpe~~~~kFDvfiT  227 (354)
T COG1568         151 LEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN--NIEAFVFDLRNPLPEDLKRKFDVFIT  227 (354)
T ss_pred             cCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc--chhheeehhcccChHHHHhhCCeeec
Confidence            35778999993 3334444432 45568999999999999999999999874  78888888754 23 11368998874


Q ss_pred             cccccCcccHHHHHHHHHHcccCC---cEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPG---GIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~Lkpg---G~l~~~~  231 (300)
                       .-.+.++....++.+-...||.-   |++.+.-
T Consensus       228 -DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         228 -DPPETIKALKLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             -CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence             22333344456677777778765   6666644

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.34  E-value=2.8  Score=35.55  Aligned_cols=94  Identities=20%  Similarity=0.292  Sum_probs=57.7

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+||=.|+|. |..+..+++..+.+ +++++.+++..+.+++.    +.. +.+  +... ... .....+|+|+..
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~--~~~~-~~~-~~~~~~d~vl~~  166 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV--AADT-ADE-IGGRGADVVIEA  166 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc--cccc-hhh-hcCCCCCEEEEc
Confidence            4677888888754 55666666666677 99999988877765543    210 111  1100 001 123468998853


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..-      ...+.+..+.|+++|.++....
T Consensus       167 ~~~------~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         167 SGS------PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             cCC------hHHHHHHHHHhcCCcEEEEEec
Confidence            211      2246788899999999988754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=88.18  E-value=3.8  Score=36.58  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+||=.|+| .|.++..+++..+.++++++.++.....+.   ++.|..    .++. .+...+....+.+|+|+-.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~----~vi~~~~~~~~~~~~~~~D~vid~  254 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD----SFLVSTDPEKMKAAIGTMDYIIDT  254 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc----EEEcCCCHHHHHhhcCCCCEEEEC
Confidence            356788888874 455666667767788888887765432222   222321    1111 1111111011248888853


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..     . ...+....+.|++||.++.+..
T Consensus       255 ~g-----~-~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        255 VS-----A-VHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CC-----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence            32     1 2246778899999999998764

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=88.17  E-value=9.3  Score=35.94  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CC-CCCcccE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PV-SDASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~D~  197 (300)
                      +...|.|..||+|.+.......     ....++|.+....+...++.++.-.+...+......+|.... .+ ....||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            4568999999999988754431     224699999999999999887544433212222223332221 11 2345777


Q ss_pred             EEEccc---------------------ccCcc----cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTLV---------------------LCSVK----DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~~---------------------l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |+++--                     .|.++    .-..++..+..+|++||...++-+..
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            775321                     11111    12356888999999999877765433

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.17  E-value=9.9  Score=31.26  Aligned_cols=103  Identities=19%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~  191 (300)
                      ++++||-.|++. ..+..+++   ..+.+|++++-++...+.+.+.....    .++.++.+|+.+..     +     .
T Consensus         4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            457889888754 34444443   35779999999887666554444332    25778888876532     0     0


Q ss_pred             CCcccEEEEcccccCc---cc--------------HHHHHHHHHHcccCCcEEEEEec
Q 022248          192 DASVDAVVGTLVLCSV---KD--------------VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~---~~--------------~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      -+.+|.++........   .+              ...+++.+...++++|.++++..
T Consensus        79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            1356888765543211   11              11235566666778888888664

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.13  E-value=2.2  Score=38.82  Aligned_cols=90  Identities=19%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..+.+|+=+|+|. |.....+++..+++++++|.++...+.|++.    |.     ...  +.++. .  ..+|+|+...
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~-----~~~--~~~e~-v--~~aDVVI~at  265 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY-----EVM--TMEEA-V--KEGDIFVTTT  265 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC-----EEc--cHHHH-H--cCCCEEEECC
Confidence            4688999999985 4444445556677999999998876666542    22     111  11111 1  3579998643


Q ss_pred             cccCcccHHHHHH-HHHHcccCCcEEEEEecc
Q 022248          203 VLCSVKDVDMTLQ-EVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       203 ~l~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~  233 (300)
                      .     .. ..+. +..+.+|+||+++.+...
T Consensus       266 G-----~~-~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         266 G-----NK-DIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             C-----CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence            2     22 2344 458899999999887743

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=88.13  E-value=4.4  Score=35.63  Aligned_cols=94  Identities=23%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C--CCCCCcc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I--PVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~--~~~~~~~  195 (300)
                      .++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++.    +..    .++...-..    +  -...+.+
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~i~~~~~~~~~  237 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIVEQILELTGGRGV  237 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHHHHHHHHcCCCCC
Confidence            356788887764 35666667776664 788888887766655532    211    111111111    0  0123569


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+++....-      ...+.+..+.|+++|+++...
T Consensus       238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         238 DCVIEAVGF------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             cEEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            998853211      135788889999999998765

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.84  E-value=3.6  Score=35.95  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEec-ccCc-C-CCCCCcccE
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQA-VGEA-I-PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~-d~~~-~-~~~~~~~D~  197 (300)
                      .++.+||=.|  .|.|.++..+++..+.++++++.++...+.+++    .|..  .+ ..... +... . ....+.+|+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~~~gvdv  210 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD--VAFNYKTVKSLEETLKKASPDGYDC  210 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EEEeccccccHHHHHHHhCCCCeEE
Confidence            4677888887  357788888888778899999988887666643    2321  11 11110 1111 0 112246898


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+-...     .  ..+....+.|+++|+++....
T Consensus       211 v~d~~G-----~--~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       211 YFDNVG-----G--EFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             EEECCC-----H--HHHHHHHHHhCcCcEEEEecc
Confidence            885321     1  235788899999999998753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=87.71  E-value=4.1  Score=35.88  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-------C--CCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-------I--PVSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-------~--~~~~  192 (300)
                      .++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++.    +..    .++..+-..       +  ....
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~~~~~~~~~~~  232 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT----HTVNVRTEDTPESAEKIAELLGG  232 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc----EEeccccccchhHHHHHHHHhCC
Confidence            4667887777654 56666777767777 89998888777666442    221    111111111       1  1233


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..+|+|+-...-      ...+.+..+.|+++|+++....
T Consensus       233 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         233 KGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence            569999864321      1246888999999999987653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=87.70  E-value=1.6  Score=30.87  Aligned_cols=74  Identities=9%  Similarity=-0.010  Sum_probs=43.0

Q ss_pred             cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          209 DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       209 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      |..+++..+....  .|.+++.-....+--....++-++++.......-..+..+++.+.+.++||++...+...-
T Consensus        12 d~~~~l~~La~~t--~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~ris~   85 (97)
T PF07109_consen   12 DAAQMLAHLASRT--RGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRTERISS   85 (97)
T ss_pred             HHHHHHHHHHHhc--cCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeecccccC
Confidence            4455666666544  4666665543333233444444444433332222345678999999999999877765543

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=87.42  E-value=7.1  Score=35.52  Aligned_cols=105  Identities=20%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             CCCeEEEECC-CCCh------hHHHhHh-CCCceEEEEcC-CHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------
Q 022248          125 KAKKVLEIGI-GTGP------NLKYYAA-DTDVQVLGVDP-NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------  189 (300)
Q Consensus       125 ~~~~vLDiGc-G~G~------~~~~l~~-~~~~~~~giD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------  189 (300)
                      ++..||=+|= |+|.      ++.++.+ ....-+++.|. -+.++++.+......++     .|+..+.+.-|      
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v-----~~f~~~~~~~Pv~Iak~  173 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV-----PFFGSGTEKDPVEIAKA  173 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC-----ceecCCCCCCHHHHHHH
Confidence            4567888875 6663      4444443 23345778884 78899999988877654     34443333333      


Q ss_pred             ----CCCCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          190 ----VSDASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       190 ----~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                          +..+.||+||+..+=.+--  +.-.-+.+++.+++|.-.|++++...
T Consensus       174 al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~  224 (451)
T COG0541         174 ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI  224 (451)
T ss_pred             HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence                3457799999866544332  33466899999999999999998544

>cd08293 PTGR2 Prostaglandin reductase

Probab=87.01  E-value=4  Score=35.92  Aligned_cols=91  Identities=9%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             CeEEEECC--CCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccEE
Q 022248          127 KKVLEIGI--GTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDAV  198 (300)
Q Consensus       127 ~~vLDiGc--G~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v  198 (300)
                      .+||=.|+  |.|..+..+++..+. ++++++.+++..+.+++.   .|..  .  ++...-..+     ...++.+|+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~--vi~~~~~~~~~~i~~~~~~gvd~v  228 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--A--AINYKTDNVAERLRELCPEGVDVY  228 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--E--EEECCCCCHHHHHHHHCCCCceEE
Confidence            68888875  677788888887777 799999888776666553   2321  1  111111111     1112469999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +....     .  ..+.+..+.|+++|+++...
T Consensus       229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         229 FDNVG-----G--EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence            85322     1  12477889999999999865

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=86.54  E-value=4.9  Score=38.11  Aligned_cols=112  Identities=18%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----C----CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----P----VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~----~~~~  193 (300)
                      .+...|||+||..|.+..-..+.  .+.-|+|||+-+--           .  .+++..++.|+..-    +    ...-
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p--~~~c~t~v~dIttd~cr~~l~k~l~t~  109 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P--IPNCDTLVEDITTDECRSKLRKILKTW  109 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c--CCccchhhhhhhHHHHHHHHHHHHHhC
Confidence            57789999999999998776663  56789999986621           0  13444444444221    1    1122


Q ss_pred             cccEEEEccccc----CcccH-------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248          194 SVDAVVGTLVLC----SVKDV-------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV  248 (300)
Q Consensus       194 ~~D~v~~~~~l~----~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  248 (300)
                      ..|+|+...+..    ++.|.       ...+.-....|+.||.++.-.+...+...+...+.+++
T Consensus       110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf  175 (780)
T KOG1098|consen  110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLF  175 (780)
T ss_pred             CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHH
Confidence            347777543222    11121       23456666778899996654443333334444444444

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.34  E-value=6.6  Score=34.28  Aligned_cols=96  Identities=22%  Similarity=0.300  Sum_probs=57.9

Q ss_pred             CCCCeEEEECC-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--cCcC----CCCCCccc
Q 022248          124 GKAKKVLEIGI-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--GEAI----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~~~~----~~~~~~~D  196 (300)
                      .++++|-=+|- |-|.++..+++..+.+|++||-+..--+.+-+.   .|.+    .|+...  -...    ..-+.-.|
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd----~fv~~~~d~d~~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD----VFVDSTEDPDIMKAIMKTTDGGID  252 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc----eeEEecCCHHHHHHHHHhhcCcce
Confidence            36666555553 589999999998999999999987544444333   3321    122211  1111    11233444


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .|... +-+       .+..+...||++|.++++....
T Consensus       253 ~v~~~-a~~-------~~~~~~~~lk~~Gt~V~vg~p~  282 (360)
T KOG0023|consen  253 TVSNL-AEH-------ALEPLLGLLKVNGTLVLVGLPE  282 (360)
T ss_pred             eeeec-ccc-------chHHHHHHhhcCCEEEEEeCcC
Confidence            44432 222       3577888999999999988543

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=86.26  E-value=5.8  Score=35.32  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+||=.|+| .|.++..+++..+.++++++.++.....+.+.   .|..  .+ +...+...+.-....+|+|+-...
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~-i~~~~~~~~~~~~~~~D~vid~~g  253 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DY-LVSSDAAEMQEAADSLDYIIDTVP  253 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EE-ecCCChHHHHHhcCCCcEEEECCC
Confidence            56778777653 45566666776777888888877655444332   2321  11 111111111101124888885321


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                            ....+..+.+.|+++|+++.....
T Consensus       254 ------~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        254 ------VFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             ------chHHHHHHHHHhccCCEEEEECCC
Confidence                  123567788999999999987643

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=85.87  E-value=6.6  Score=34.18  Aligned_cols=93  Identities=11%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||=.|  .|.|..+..+++..+.++++++.++...+.+++    .|..  .  ++...-+++     ....+.+|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~--~--vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD--A--VFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--E--EEeCCCccHHHHHHHHCCCCcE
Confidence            4667888777  466777788888778899999988877666654    2321  1  121111111     11224689


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|+-...     .  ..+....+.|+++|+++...
T Consensus       214 ~vld~~g-----~--~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         214 CYFDNVG-----G--EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             EEEECCC-----H--HHHHHHHHhhccCCEEEEEc
Confidence            8885321     1  34688899999999998765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=84.81  E-value=8  Score=33.97  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=58.1

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcC-C-CCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAI-P-VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~-~-~~~~~~D  196 (300)
                      .++.+||-.|+|. |..+..+++..+.. +++++.++...+.+++    .+..    .++...   ...+ . .....+|
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~d  229 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD----DTINPKEEDVEKVRELTEGRGAD  229 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEecCccccHHHHHHHhCCCCCC
Confidence            4667888888754 56666677767776 9999988877665533    2221    111111   1111 1 1224599


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+...      .....+..+.+.|+++|.++....
T Consensus       230 ~vld~~------g~~~~~~~~~~~l~~~G~~v~~g~  259 (343)
T cd08236         230 LVIEAA------GSPATIEQALALARPGGKVVLVGI  259 (343)
T ss_pred             EEEECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence            998542      112356888999999999988763

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PLN02740 Alcohol dehydrogenase-like

Probab=84.41  E-value=5.9  Score=35.66  Aligned_cols=96  Identities=19%  Similarity=0.230  Sum_probs=58.4

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-----cCc-C-CCCCCc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-----GEA-I-PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-----~~~-~-~~~~~~  194 (300)
                      .++.+||=+|+| .|.++..+++..+. +++++|.++..++.+++.    +..    .++...     ..+ + ....+.
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i~~~~~~~~~~~~v~~~~~~g  268 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT----DFINPKDSDKPVHERIREMTGGG  268 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc----EEEecccccchHHHHHHHHhCCC
Confidence            467889988874 34455566666676 699999999888777542    321    122111     100 1 011236


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      +|+|+-...-      ...+......+++| |+++++...
T Consensus       269 ~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        269 VDYSFECAGN------VEVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             CCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEccC
Confidence            9999854321      23467777888886 998887654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=84.25  E-value=9.2  Score=33.87  Aligned_cols=99  Identities=14%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----C--CCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----P--VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~~D  196 (300)
                      .++.+||=.|+|. |.++..+++..+.+++++|.++..++.+++.    +.. .-+.....+.+++    .  .....+|
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~~~~~~~~t~~~g~d  239 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GAD-LTLNPKDKSAREVKKLIKAFAKARGLR  239 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc-eEecCccccHHHHHHHHHhhcccCCCC
Confidence            4678999999854 5666666766677899999999887777542    221 0011111110010    0  0112344


Q ss_pred             ----EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 ----AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ----~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                          +|+-..     . ....+....+.|++||+++++...
T Consensus       240 ~~~d~v~d~~-----g-~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       240 STGWKIFECS-----G-SKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCcCEEEECC-----C-ChHHHHHHHHHHhcCCeEEEECcC
Confidence                454211     1 123456778899999999998753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=84.15  E-value=9.7  Score=33.60  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCcC--CCCCCccc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEAI--PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~--~~~~~~~D  196 (300)
                      .++.+||=.|+| .|.++..+++..+.+ ++++|.++...+.+++    .+..    .++..+   ...+  ......+|
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~~~~~~d  230 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAPQIQSVLRELRFD  230 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHHHHHHHhcCCCCC
Confidence            457788888874 344555566666765 7899998887776643    2221    111111   0111  01224577


Q ss_pred             -EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 -AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 -~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                       +|+-.-     .. ...+.+..+.|++||.+++....
T Consensus       231 ~~v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        231 QLILETA-----GV-PQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             eEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEccC
Confidence             555321     11 23578888999999999998743

>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily

Probab=84.14  E-value=1.2  Score=35.28  Aligned_cols=47  Identities=11%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             CCCCcccEEEEcccccCcc------------cHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          190 VSDASVDAVVGTLVLCSVK------------DVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      ...+..|+|+++++|+.+.            +.+.++..+..+|+|+..++...-.+.+
T Consensus        46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~  104 (183)
T cd01842          46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVA  104 (183)
T ss_pred             ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCC
Confidence            3457789999999988662            3456778888888899888887755533

SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=84.06  E-value=11  Score=36.33  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=57.2

Q ss_pred             CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEE
Q 022248          127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV  199 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~  199 (300)
                      .+|+=  ||.|.++..+++   ..+..++.+|.+++.++.+++.         ....+.+|+.+..    ..-+..|+++
T Consensus       401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vv  469 (601)
T PRK03659        401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY---------GYKVYYGDATQLELLRAAGAEKAEAIV  469 (601)
T ss_pred             CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC---------CCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence            34544  555666766655   4677999999999998887652         3467888886642    2234677777


Q ss_pred             EcccccCcccHH--HHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +..     +|.+  ..+-...|.+.|+..++.-.
T Consensus       470 ~~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa  498 (601)
T PRK03659        470 ITC-----NEPEDTMKIVELCQQHFPHLHILARA  498 (601)
T ss_pred             EEe-----CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence            643     2322  23444556678888888754

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=83.98  E-value=2  Score=37.87  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-C-CCCCcccEE
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-P-VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~v  198 (300)
                      .++.+||=.|.  |.|.++.+|++..+..++++--+++-.+.+++    .+.+ .-+.+...|+.+ + . .....+|+|
T Consensus       141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd-~vi~y~~~~~~~~v~~~t~g~gvDvv  215 (326)
T COG0604         141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGAD-HVINYREEDFVEQVRELTGGKGVDVV  215 (326)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCC-EEEcCCcccHHHHHHHHcCCCCceEE
Confidence            45788998874  66788899998777677777777765554443    3321 122223333221 1 1 223469999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +..-.-       ..+.+..+.|+++|.++......
T Consensus       216 ~D~vG~-------~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         216 LDTVGG-------DTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             EECCCH-------HHHHHHHHHhccCCEEEEEecCC
Confidence            964332       34577889999999999987654

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=83.13  E-value=12  Score=29.88  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             CeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcC---------CCCCCcc
Q 022248          127 KKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI---------PVSDASV  195 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~---------~~~~~~~  195 (300)
                      ..|+.+|||--.....+.... +..++-+|. +.+++.-++.++..+.. ..+.+++.+|+.+.         .+..+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            489999999988877776543 778888886 55566555555554210 12345688888652         1334555


Q ss_pred             cEEEEcccccCcc
Q 022248          196 DAVVGTLVLCSVK  208 (300)
Q Consensus       196 D~v~~~~~l~~~~  208 (300)
                      -++++-.++.+++
T Consensus       159 tl~i~Egvl~Yl~  171 (183)
T PF04072_consen  159 TLFIAEGVLMYLS  171 (183)
T ss_dssp             EEEEEESSGGGS-
T ss_pred             eEEEEcchhhcCC
Confidence            6777777788774

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=83.12  E-value=7.2  Score=34.27  Aligned_cols=97  Identities=12%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEec-ccCc-C-CCCCCcccE
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQA-VGEA-I-PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~-d~~~-~-~~~~~~~D~  197 (300)
                      .++.+||=.|+  |.|.++..+++..+.++++++.++...+.+++.+   |..  .+ ..... +..+ + ....+.+|+
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~--~vi~~~~~~~~~~~i~~~~~~gvd~  224 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD--DAFNYKEEPDLDAALKRYFPNGIDI  224 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc--eeEEcCCcccHHHHHHHhCCCCcEE
Confidence            46788888885  5677888888878889999998887777666532   221  11 11111 1111 0 111246898


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+-...     .  ..+.+..+.|+++|.++....
T Consensus       225 v~d~~g-----~--~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         225 YFDNVG-----G--KMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             EEECCC-----H--HHHHHHHHHhccCcEEEEecc
Confidence            885321     1  356888999999999998653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.02  E-value=3.8  Score=36.95  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV  169 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~  169 (300)
                      .++.+||-|.+|....+..+.+ ...+|++||+|+.++...+-+..
T Consensus        34 ~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   34 GPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            5788999998776666656554 45699999999998888776654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK07576 short chain dehydrogenase; Provisional

Probab=82.28  E-value=19  Score=30.38  Aligned_cols=74  Identities=16%  Similarity=0.019  Sum_probs=45.8

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~  191 (300)
                      +++++|=.|. +|..+..+++   ..+..|+++|.++..++...+.+...+   .++.++..|+.+..     +     .
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            5678888875 4444444443   357789999988877666555444332   25667777875421     0     1


Q ss_pred             CCcccEEEEcc
Q 022248          192 DASVDAVVGTL  202 (300)
Q Consensus       192 ~~~~D~v~~~~  202 (300)
                      .+.+|+++.+.
T Consensus        84 ~~~iD~vi~~a   94 (264)
T PRK07576         84 FGPIDVLVSGA   94 (264)
T ss_pred             cCCCCEEEECC
Confidence            24689998654

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=82.14  E-value=12  Score=33.08  Aligned_cols=99  Identities=22%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v  198 (300)
                      .++.+||=.|+| .|..+..+++..+. .++++|.++...+.+++    .+.. .-+.....+.. .+ . .....+|+|
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~v  239 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKGVDAV  239 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCCCcEE
Confidence            456788888765 44555666665666 59999998877666654    2321 00111111110 00 1 123468998


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +....     . ...+.++.+.|+++|+++.....
T Consensus       240 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~  268 (351)
T cd08285         240 IIAGG-----G-QDTFEQALKVLKPGGTISNVNYY  268 (351)
T ss_pred             EECCC-----C-HHHHHHHHHHhhcCCEEEEeccc
Confidence            85321     1 23568889999999999987643

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=81.66  E-value=17  Score=32.23  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=55.4

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccC----cC-C-CCCCcc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGE----AI-P-VSDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~----~~-~-~~~~~~  195 (300)
                      ++.+||=.|+| .|..+..+++..+. ++++++.++...+.+++    .+..  .+ .....+..    .+ . .....+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~~  250 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD--ATIDIDELPDPQRRAIVRDITGGRGA  250 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC--eEEcCcccccHHHHHHHHHHhCCCCC
Confidence            56777777753 33444555666777 89999988876665542    2321  11 11110100    00 0 123468


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+....-      ...+.+..+.|+++|+++....
T Consensus       251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             cEEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence            999853211      2246788899999999998764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=81.61  E-value=31  Score=30.40  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=57.6

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC-C-CCCCcccEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI-P-VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~-~-~~~~~~D~v  198 (300)
                      .++.+||=.|+| .|.++..+++..+. .+++++.++...+.+++.    +.. .-+.....+.. .+ . ...+.+|+|
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~-~~i~~~~~~~~~~l~~~~~~~~~d~v  245 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GAT-IVLDPTEVDVVAEVRKLTGGGGVDVS  245 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-EEECCCccCHHHHHHHHhCCCCCCEE
Confidence            356777777753 34455555666677 799999888877776442    321 00111111110 01 0 122459999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +-....      ...+..+.+.|+++|.++.....
T Consensus       246 id~~g~------~~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         246 FDCAGV------QATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             EECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence            854321      22468888999999999987653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=81.02  E-value=25  Score=27.59  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---CC-CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IP-VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~~D~v~  199 (300)
                      ....+|+-|||=+-.....-......+++..|++......        +   ++ .|+--|...   +| .-.++||+|+
T Consensus        24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~---~~-~F~fyD~~~p~~~~~~l~~~~d~vv   91 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G---GD-EFVFYDYNEPEELPEELKGKFDVVV   91 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C---Cc-ceEECCCCChhhhhhhcCCCceEEE
Confidence            4668999999987544333212467789999998754321        1   12 344444432   22 1147999999


Q ss_pred             EcccccCcccH-HHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKDV-DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.=-+- ..+. ......+.-++|+++.+++..
T Consensus        92 ~DPPFl-~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   92 IDPPFL-SEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             ECCCCC-CHHHHHHHHHHHHHHhCccceEEEec
Confidence            843221 1222 234455555558888888876

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=80.98  E-value=16  Score=32.63  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe--cccCc-C-CCCCCcccE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ--AVGEA-I-PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~~~~D~  197 (300)
                      .++.+||=.|+| .|.++..+++..+. +++++|.++..++.+++.    +.. .-+....  .+... + ....+.+|+
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~  258 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GAT-DCVNPNDYDKPIQEVIVEITDGGVDY  258 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC-eEEcccccchhHHHHHHHHhCCCCCE
Confidence            467888888875 35566667776676 799999999888777543    321 0011110  00000 1 011236898


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      |+-.-.     . ...+....+.++++ |+++++...
T Consensus       259 vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~~  289 (368)
T TIGR02818       259 SFECIG-----N-VNVMRAALECCHKGWGESIIIGVA  289 (368)
T ss_pred             EEECCC-----C-HHHHHHHHHHhhcCCCeEEEEecc
Confidence            885321     1 23467778889886 999887753

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=80.85  E-value=13  Score=32.29  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++    .+..    .++..  ...  .++.+|+++...
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~----~~~~~--~~~--~~~~vD~vi~~~  233 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD----WAGDS--DDL--PPEPLDAAIIFA  233 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc----EEecc--Ccc--CCCcccEEEEcC
Confidence            356677777664 2334444555677899999988876666633    2221    11111  111  234688887532


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .     . ...+.++.+.|+++|.++....
T Consensus       234 ~-----~-~~~~~~~~~~l~~~G~~v~~g~  257 (329)
T cd08298         234 P-----V-GALVPAALRAVKKGGRVVLAGI  257 (329)
T ss_pred             C-----c-HHHHHHHHHHhhcCCEEEEEcC
Confidence            1     1 1357889999999999998653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=80.71  E-value=18  Score=27.76  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=48.8

Q ss_pred             eEEEECCCCC---hhHHHhHhCCCceEEEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CCC
Q 022248          128 KVLEIGIGTG---PNLKYYAADTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD  192 (300)
Q Consensus       128 ~vLDiGcG~G---~~~~~l~~~~~~~~~giD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~  192 (300)
                      ++|=.|++.|   .++..+++..+..++.+.-+  ....+.....++..+   .++.++..|+.+..          ...
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence            5666777655   23344444546678888887  566666666666555   47899998875531          124


Q ss_pred             CcccEEEEcccccC
Q 022248          193 ASVDAVVGTLVLCS  206 (300)
Q Consensus       193 ~~~D~v~~~~~l~~  206 (300)
                      +.+|+++.+.....
T Consensus        79 ~~ld~li~~ag~~~   92 (167)
T PF00106_consen   79 GPLDILINNAGIFS   92 (167)
T ss_dssp             SSESEEEEECSCTT
T ss_pred             cccccccccccccc
Confidence            67999997655443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=80.50  E-value=9.9  Score=34.19  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHH-HHHHHHHHHHcCCCCCCEEEEe-cccCcCCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQ-AVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~-~~~a~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v~~~  201 (300)
                      ++.+||=.|+| .|.++..+++..+.+++++|.++.. .+.++    ..|..  .  ++. .+.+.+.-..+.+|+|+-.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~--~--~i~~~~~~~v~~~~~~~D~vid~  249 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD--S--FLVTTDSQKMKEAVGTMDFIIDT  249 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc--E--EEcCcCHHHHHHhhCCCcEEEEC
Confidence            57788888874 4456666677678889999887543 33332    23321  1  111 1101110001248888853


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..      ....+....+.|+++|.++.+..
T Consensus       250 ~G------~~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        250 VS------AEHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             CC------cHHHHHHHHHhhcCCCEEEEEcc
Confidence            21      12246778889999999998764

>cd05281 TDH Threonine dehydrogenase

Probab=80.42  E-value=13  Score=32.63  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=54.9

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc---CcCCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG---EAIPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v  198 (300)
                      .++.+||-.|+|. |..+..+++..+. .+++++-++.-...+++.    +.. .-+.....+.   .++ ...+.+|+|
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~~~-~~~~~vd~v  235 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GAD-VVINPREEDVVEVKSV-TDGTGVDVV  235 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----Ccc-eeeCcccccHHHHHHH-cCCCCCCEE
Confidence            3566777777643 5566666666666 688887777665554432    211 0000001111   111 123568999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +..-.      ....+.++.+.|+++|.++....
T Consensus       236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g~  263 (341)
T cd05281         236 LEMSG------NPKAIEQGLKALTPGGRVSILGL  263 (341)
T ss_pred             EECCC------CHHHHHHHHHHhccCCEEEEEcc
Confidence            85321      12246788899999999988753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK12939 short chain dehydrogenase; Provisional

Probab=80.19  E-value=16  Score=30.15  Aligned_cols=76  Identities=17%  Similarity=0.061  Sum_probs=48.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC-----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----  191 (300)
                      +++++|=.|+ +|..+..+++   ..+.++++++.++..++...+.++..+   .++.++.+|+.+..     +.     
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4567886665 4555555554   356789999988877666655554433   36788888886532     11     


Q ss_pred             CCcccEEEEcccc
Q 022248          192 DASVDAVVGTLVL  204 (300)
Q Consensus       192 ~~~~D~v~~~~~l  204 (300)
                      -+.+|+|+.....
T Consensus        82 ~~~id~vi~~ag~   94 (250)
T PRK12939         82 LGGLDGLVNNAGI   94 (250)
T ss_pred             cCCCCEEEECCCC
Confidence            1468998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
1xxl_A	239	The Crystal Structure Of Ycgj Protein From Bacillus		3e-08
3bus_A	273	Crystal Structure Of Rebm Length = 273		9e-07
2gs9_A	211	Crystal Structure Of Tt1324 From Thermus Thermophil		2e-06
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		6e-06
1vlm_A	219	Crystal Structure Of Sam-Dependent Methyltransferas		1e-05
1p91_A	269	Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G7		7e-05
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		8e-05
2yqz_A	263	Crystal Structure Of Hypothetical Methyltransferase		2e-04
3sm3_A	235	Crystal Structure Of Sam-Dependent Methyltransferas		2e-04
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		8e-04

>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           +VL+IG G G     ++     + +GVD  ++  + A + A   G+   N +F Q   E+
Sbjct: 24  RVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEXVEVASSFAQEKGV--ENVRFQQGTAES 80
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
           +P  D S D +          DV   ++EV RVLK  G +L V+H A +D    +F    
Sbjct: 81  LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF---- 136
Query: 248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG 280
           V+ L ++  D  H+ R++  +  +A FS+ +L 
Sbjct: 137 VNHLNRL-RDPSHV-RESSLSEWQAXFSANQLA 167

>pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           +VL++G G G      A   DV+V G+  +R     A   A AAGL      F  A    
Sbjct: 64  RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-ANRVTFSYADAXD 122
Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233
           +P  DAS DAV     L    D    L+E  RVL+PGG     + V
Sbjct: 123 LPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168

>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8 Length = 211

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           YE +Y + + + + + E        +    L    + +LE+G GTG  L+        Q 
Sbjct: 10  YEAWYGTPLGAYVIAEE-------ERALKGLLPPGESLLEVGAGTGYWLRRLPYP---QK 59
Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
           +GV+P+       +  A  A        +++A GEA+P    S D V+    L  V+DV+
Sbjct: 60  VGVEPSEAXLAVGRRRAPEA-------TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVE 112
Query: 212 MTLQEVRRVLKPGG 225
             L E RRVL+PGG
Sbjct: 113 RVLLEARRVLRPGG 126

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 120 DNLRGKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF 178
           D +     KVLE G G G      A +  D ++  +D + +  + A+      G+   N 
Sbjct: 32  DTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--KNV 89
Query: 179 KFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
           KFLQA   ++P  D+S D +    VL  ++  +  L+ +++VLKPGG    +E
Sbjct: 90  KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142

>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase, Possible Histamine N-Methyltransferase (Tm1293) From Thermotoga Maritima At 2.20 A Resolution Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           +EIG+GTG     +A    +++ GV+P+ +  + A+   V           L+   E +P
Sbjct: 52  VEIGVGTGR----FAVPLKIKI-GVEPSERXAEIARKRGVFV---------LKGTAENLP 97
Query: 190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230
           + D S D  +    +C V D +  L+E  R+LK GG YL V
Sbjct: 98  LKDESFDFALXVTTICFVDDPERALKEAYRILKKGG-YLIV 137

>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745 Methyltransferase (Northeast Structural Genomics Consortium Target Er19) Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
           +QL + L  KA  VL+IG G G     +A A  ++   G+D        ++ A  AA   
Sbjct: 76  AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD-------VSKVAIKAAAKR 128
Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG 225
                F  A    +P SD S DA++     C         +E+ RV+KPGG
Sbjct: 129 YPQVTFCVASSHRLPFSDTSXDAIIRIYAPCKA-------EELARVVKPGG 172

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 94  EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTG-PNLKYYAADTDVQVL 152
           E+Y ++    ++  +AE+   +    ++ + + ++VL++  GTG P L+   A+   +V+
Sbjct: 10  EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLE--LAERGYEVV 67
Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVV---GTLVLCSVK 208
           G+D + +M + A+  A    L +   +FLQ  G+ + ++     DAV     T++    +
Sbjct: 68  GLDLHEEMLRVARRKAKERNLKI---EFLQ--GDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 209 DVDMTLQEVRRVLKPGGIYL 228
           D+     +V   LKPGG+++
Sbjct: 123 DLRKLFSKVAEALKPGGVFI 142

>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase Ttha0223 From Thermus Thermophilus Hb8 Complexed With S-adenosylmethionine Length = 263

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query: 97  ASVMNSSMKSYEAEVAGYKSQLFDNL---RGKAKKVLEIGIGTGP--------NLKYYAA 145
           A+     ++++  EVAG  +    +    +G+    LE+G+GTG           +Y A 
Sbjct: 8   AAYAYDRLRAHPPEVAGQIATAXASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIAL 67
Query: 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205
           D D   L V        + Q  A          + +QA   AIP+ D SV  V+   +  
Sbjct: 68  DADAAXLEV--------FRQKIAGVD----RKVQVVQADARAIPLPDESVHGVIVVHLWH 115
Query: 206 SVKDVDMTLQEVRRVLKPGGIYL--FVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263
            V D    L E  RVLKPGG  L  + +  A+ + T  + W+         V  G H  R
Sbjct: 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKR 175

>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-----TNFKFLQ 182
           ++L+IG G+G  +    A     V G+D N +  + A+TAA + GL         FK   
Sbjct: 33  EILDIGCGSG-KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN 91
Query: 183 AVGEAIPVSDASVDAVVGTLVLCSV---KDVDMTLQEVRRVLKPGGIYLFVE 231
           A   ++   D+S D  V    L SV   K+    ++EV RVLKPG     VE
Sbjct: 92  A--SSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN----RKMEKYAQTAAVAAGLPLTNFKF 180
           K  KVL++  G G    +   D   +V+GVD +    RK  +YA++         +N +F
Sbjct: 38  KRGKVLDLACGVG-GFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRE-------SNVEF 89
Query: 181 LQAVGEAIPVSDASVDAVV--GTLVLCSVKDVDMTLQEVRRVLKPGGIYL 228
           +      +   D + D V+   ++V     +++   +EVRRVLKP G ++
Sbjct: 90  IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	7e-25
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-25
1xxl_A	239	YCGJ protein; structural genomics, protein structu	9e-25
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-24
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-23
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-23
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-23
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	7e-23
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	8e-23
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-22
3ege_A	261	Putative methyltransferase from antibiotic biosyn	5e-22
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-22
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-22
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-21
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-21
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	8e-21
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	4e-20
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-20
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-19
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-19
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	8e-19
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-18
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-18
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-18
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-18
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-17
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-16
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-16
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-16
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-16
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	7e-16
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-15
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-15
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	4e-15
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-14
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-14
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-14
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-14
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-14
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-14
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	6e-14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	7e-14
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	7e-13
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-12
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-11
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-11
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	3e-11
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	4e-11
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-10
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-10
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	2e-10
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	8e-10
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	9e-10
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	5e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-09
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	7e-09
3lcc_A	235	Putative methyl chloride transferase; halide methy	5e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	6e-08
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	2e-07
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	2e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	6e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	9e-05
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	1e-04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	1e-04
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	2e-04
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	4e-04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	4e-04
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	5e-04
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	9e-04

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 98.3 bits (245), Expect = 7e-25
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 18/152 (11%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           + +EIG+GTG              +GV+P+ +M + A+   V           L+   E 
Sbjct: 50  RGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGV---------FVLKGTAEN 95

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
           +P+ D S D  +    +C V D +  L+E  R+LK GG    +  +  ++    + ++  
Sbjct: 96  LPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGG--YLIVGIVDRESFLGREYEKN 153

Query: 248 VDPLQQIVSDGCHLTRQT-GNNISEAGFSSVE 278
            +       +    + +   + + +AGF   +
Sbjct: 154 KEKS-VFYKNARFFSTEELMDLMRKAGFEEFK 184

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 98.3 bits (245), Expect = 7e-25
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
               + +     A   ++IG G G      A  +D  +  +D ++ M + A      A L
Sbjct: 32  IAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL 91

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233
                + +Q     IP+ D   D +V    +   +DV    +E+ R+LK GG        
Sbjct: 92  N-DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150

Query: 234 AAKDGTFLKFWQNVVDPLQQIVS-DGCHLTRQTGNNI----SEAGFSSVEL 279
             K+         ++         +  +++++          E G SS E+
Sbjct: 151 GNKE-LRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 98.7 bits (246), Expect = 9e-25
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 115 KSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
              +      +A  +VL+IG G G +     +    + +GVD  ++M + A + A   G+
Sbjct: 10  LGLMIKTAECRAEHRVLDIGAGAG-HTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV 68

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV 233
              N +F Q   E++P  D S D +          DV   ++EV RVLK  G +L V+H 
Sbjct: 69  --ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126

Query: 234 AAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
           A +D   L  + N ++ L+           +     S    +  ++
Sbjct: 127 APEDP-VLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 96.5 bits (240), Expect = 5e-24
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           Y   + +  + + + Y + +   +  L   ++ K  KVL++  G G    +   D   +V
Sbjct: 6   YYRVFPTYTDINSQEYRSRIETLEPLLMKYMK-KRGKVLDLACGVG-GFSFLLEDYGFEV 63

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV--KD 209
           +GVD +  M + A+  A +      N +F+      +   D + D V+    +      +
Sbjct: 64  VGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120

Query: 210 VDMTLQEVRRVLKPGGIYLFVEHV 233
           ++   +EVRRVLKP G ++     
Sbjct: 121 LNQVFKEVRRVLKPSGKFIMYFTD 144

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 95.0 bits (236), Expect = 1e-23
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 15/182 (8%)

Query: 104 MKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
           MK+   +   Y+   + N     K VL+ G G          +   +  G++ +    K 
Sbjct: 2   MKTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKK 61

Query: 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC--SVKDVDMTLQEVRRVL 221
           A+  +             +     +P  D S+  V     +      DV   + E++RVL
Sbjct: 62  AENFSRENNF---KLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVL 118

Query: 222 KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN 281
           KPGG+      +  KD  + K  +         + +G  L  + G  +  +  S  E   
Sbjct: 119 KPGGLACINF-LTTKDERYNKGEK---------IGEGEFLQLERGEKVIHSYVSLEEADK 168

Query: 282 AF 283
            F
Sbjct: 169 YF 170

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 95.8 bits (238), Expect = 2e-23
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
           +G+    LE+G+GTG  +         + + +D +  M +  +         +     +Q
Sbjct: 37  KGEEPVFLELGVGTG-RIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQ---VVQ 92

Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF 240
           A   AIP+ D SV  V+   +   V D    L E  RVLKPGG  L     A     +
Sbjct: 93  ADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEW 150

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 94.9 bits (236), Expect = 3e-23
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAG-YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT 147
           PD++   Y+  +  S++  +          +   + G   +++++G G G   ++     
Sbjct: 10  PDFFAG-YSQ-LGRSIEGLDGAAEWPALRAMLPEVGGL--RIVDLGCGFGWFCRWAHEHG 65

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV 207
              VLG+D + KM   A+ A    G+      + +A  + + +   S D    +L L  V
Sbjct: 66  ASYVLGLDLSEKMLARARAAGPDTGIT-----YERADLDKLHLPQDSFDLAYSSLALHYV 120

Query: 208 KDVDMTLQEVRRVLKPGGIYLF-VEH 232
           +DV    + V + L PGG ++F  EH
Sbjct: 121 EDVARLFRTVHQALSPGGHFVFSTEH 146

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 94.6 bits (235), Expect = 7e-23
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 11/173 (6%)

Query: 114 YKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA 171
            +  L  +       KVLE G G G      A +  D ++  +D + +  + A+      
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN 84

Query: 172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
           G+   N KFLQA   ++P  D+S D +    VL  ++  +  L+ +++VLKPGG    +E
Sbjct: 85  GIK--NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142

Query: 232 HVAA------KDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
                     +    ++ W  ++     +  +   + RQ    + E+GF  + 
Sbjct: 143 GDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNS-LVGRQIYPLLQESGFEKIR 194

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 93.0 bits (231), Expect = 8e-23
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 94  EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLG 153
             Y S +      Y+   A Y+  L D +      VLE G+GTG NL          V G
Sbjct: 14  HTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTG-NLTNKLLLAGRTVYG 72

Query: 154 VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMT 213
           ++P+R+M   A+            F   +    +  V   S+D +V T     + D +  
Sbjct: 73  IEPSREMRMIAKEKLPK------EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEKN 125

Query: 214 --LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
             + +  ++L  GG  +F + + A    + K  +  
Sbjct: 126 VAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAA 161

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 92.2 bits (229), Expect = 3e-22
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
           D   EF+         S            F+    K  +VL++G G G    Y  + T  
Sbjct: 21  DSSAEFWNQNSQEMWDSGSRSTI---IPFFEQYVKKEAEVLDVGCGDG-YGTYKLSRTGY 76

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           + +GVD +  M +  +       L      F++    ++P  +   +A++    L   ++
Sbjct: 77  KAVGVDISEVMIQKGKERGEGPDL-----SFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131

Query: 210 VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN- 268
               L E++RVLK  G                   +   +   ++               
Sbjct: 132 PLRALNEIKRVLKSDGYACIA--------ILGPTAKPRENSYPRLYGKDVVCNTMMPWEF 183

Query: 269 ---ISEAGFSSVE 278
              + E GF  V+
Sbjct: 184 EQLVKEQGFKVVD 196

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 91.9 bits (228), Expect = 5e-22
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           K   + +IG GTG       A+  + V  V+P+  M         A   P    ++    
Sbjct: 34  KGSVIADIGAGTGGYSVA-LANQGLFVYAVEPSIVM------RQQAVVHP--QVEWFTGY 84

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
            E + + D SVD V+  L +     ++ + QE++R+++ G I L    +      +L 
Sbjct: 85  AENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLY 142

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 89.3 bits (222), Expect = 7e-22
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
            +   N+  GK   +++ G G G     Y  +   ++  +D N    K  +         
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNG-FYCKYLLEFATKLYCIDINVIALKEVKE-------- 57

Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
              F  +  + +   + D SVD ++       + D    + EV+R+LK  G  + ++
Sbjct: 58  --KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIID 112

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 90.2 bits (224), Expect = 7e-22
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 12/139 (8%)

Query: 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
           + +    L    + +LE+G GTG  L+        Q +GV+P+  M    +  A  A   
Sbjct: 26  EERALKGLLPPGESLLEVGAGTGYWLRRLPY---PQKVGVEPSEAMLAVGRRRAPEA--- 79

Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG--IYLFVEH 232
                +++A GEA+P    S D V+    L  V+DV+  L E RRVL+PGG  +   +E 
Sbjct: 80  ----TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135

Query: 233 VAAKDGTFLKFWQNVVDPL 251
           ++     + +  +  V P 
Sbjct: 136 LSPWAALYRRLGEKGVLPW 154

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 38/224 (16%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKA-KKVLEIGIGT 136
           M++ ++  P +    +       +     ++ E      ++      K    VL++G G 
Sbjct: 1   MSLAHKFDPSKIKKLD-----DPSRLE-LFDPE------KVLKEFGLKEGMTVLDVGTGA 48

Query: 137 GPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190
           G    +Y            +V  +D   +M  YA       GL   N + L++    IP+
Sbjct: 49  G----FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--KNVEVLKSEENKIPL 102

Query: 191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP 250
            D +VD +        + +    L+E++RV KP      ++        + K  ++   P
Sbjct: 103 PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID--------WKKEERDKGPP 154

Query: 251 LQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASLISPHV 294
            +++ S+      + G  + +AG     +         + +  V
Sbjct: 155 PEEVYSE-----WEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 88.7 bits (220), Expect = 7e-21
 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
           + Y      Y ++    ++  +AE+   +    ++ + + ++VL++  GTG      A +
Sbjct: 3   ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA-E 61

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV---GTLV 203
              +V+G+D + +M + A+  A    L +   +FLQ     I   +   DAV     T++
Sbjct: 62  RGYEVVGLDLHEEMLRVARRKAKERNLKI---EFLQGDVLEIAFKN-EFDAVTMFFSTIM 117

Query: 204 LCSVKDVDMTLQEVRRVLKPGGIYLF 229
               +D+     +V   LKPGG+++ 
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFIT 143

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 88.3 bits (219), Expect = 8e-21
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 15/192 (7%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           +   +   + S + +  +++A         L+   ++VL++  G G ++    A    +V
Sbjct: 7   HHHHHHMYVTSQIHAKGSDLAKLMQIA--ALK-GNEEVLDVATGGG-HVANAFAPFVKKV 62

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
           +  D    + K A+      G      +++Q   E +P +D     V   +      +  
Sbjct: 63  VAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA 120

Query: 212 MTLQEVRRVLKPGGIYLFVEHVAAKD---GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN 268
             + E  RVLK GG  L V++ A ++     F  + +   D      S      +     
Sbjct: 121 SFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDY-----SHHRAWKKSDWLK 175

Query: 269 -ISEAGFSSVEL 279
            + EAGF   EL
Sbjct: 176 MLEEAGFELEEL 187

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 86.5 bits (214), Expect = 4e-20
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTD 148
             ++E++     +        E    K ++  +   K   VL++G G G +  Y A    
Sbjct: 11  KHFFEQYSQMPRSKEGLKAAGEWHELK-KMLPDFNQK--TVLDLGCGFGWHCIYAAEHGA 67

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK 208
            +VLG+D + +M   A+    +         + Q   E I +   + + V+ +L L  + 
Sbjct: 68  KKVLGIDLSERMLTEAKRKTTSP-----VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122

Query: 209 DVDMTLQEVRRVLKPGGIYLF-VEH 232
             D   ++V   LK  G ++F VEH
Sbjct: 123 SFDDICKKVYINLKSSGSFIFSVEH 147

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 86.8 bits (215), Expect = 5e-20
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 5/154 (3%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +  K L++G G G   ++      V +  ++      K  +     AGL   N       
Sbjct: 82  RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGS 140

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244
              IP  D S D +          D     QE  RVLKP G+    + +  +DG      
Sbjct: 141 FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM-KEDGIDKSSI 199

Query: 245 QNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
           Q ++D   +I            +   E G  ++ 
Sbjct: 200 QPILD---RIKLHDMGSLGLYRSLAKECGLVTLR 230

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 85.3 bits (211), Expect = 1e-19
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 93  EEFYASV------MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
            EFY  +      M  +   ++       S L + L+    +VL++G GTG     +  +
Sbjct: 18  WEFYDRIARAYDSMYETP-KWKLYHRLIGSFLEEYLK-NPCRVLDLGGGTG-KWSLFLQE 74

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT-LVLC 205
              +V+ VDP+++M + A+   V           ++A  E +P    + +AV+    VL 
Sbjct: 75  RGFEVVLVDPSKEMLEVAREKGVK--------NVVEAKAEDLPFPSGAFEAVLALGDVLS 126

Query: 206 SVKDVDMTLQEVRRVLKPGGIYLFVEH 232
            V++ D    E+RRVL P G+ +    
Sbjct: 127 YVENKDKAFSEIRRVLVPDGLLIATVD 153

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 83.0 bits (205), Expect = 8e-19
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 13/157 (8%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
              K+ +IG GTG    + A     Q+ G+D      +     AV A       K +   
Sbjct: 46  DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGS 104

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD---GTFL 241
            + +P  +  +D +     + ++      + E  + LK GG     E             
Sbjct: 105 MDNLPFQNEELDLIWSEGAIYNIGFERG-MNEWSKYLKKGGFIAVSEASWFTSERPAEIE 163

Query: 242 KFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
            FW +    +  I            + +  AG++   
Sbjct: 164 DFWMDAYPEISVI--------PTCIDKMERAGYTPTA 192

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 83.3 bits (206), Expect = 8e-19
 Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           +VL++G G G      A   DV+V G+  +R     A   A AAGL      F  A    
Sbjct: 64  RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMD 122

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
           +P  DAS DAV     L  + D    L+E+ RVL+PGG     + V        K     
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEA-- 180

Query: 248 VDPLQQIVSDGCHLT----RQTGNNISEAGFSSVE 278
              +    + G  L+     +  +++ +A      
Sbjct: 181 ---VDAFRAGGGVLSLGGIDEYESDVRQAELVVTS 212

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +  KVL+IG G G    Y          G+D    +   A               F    
Sbjct: 55  ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK----IIFEAND 110

Query: 185 GEAIPVSDASVDAVV--GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
                  + + D +     ++  S+++ +   Q+  + LKP G  L  ++ A +   +  
Sbjct: 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170

Query: 243 FWQNVVDPLQQIVSDGCHL--TRQTGNNISEAGFSSVELGN 281
            ++      + +      L    +  + ++   F +V   +
Sbjct: 171 EFK------EYVKQRKYTLITVEEYADILTACNFKNVVSKD 205

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 81.9 bits (202), Expect = 2e-18
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 13/157 (8%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +   + +IG GTG      A     QV G+D            A  +GL       +   
Sbjct: 46  EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGS 104

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFL 241
            + +P  +  +D +     + ++      L E R+ LK GG     E     D       
Sbjct: 105 MDDLPFRNEELDLIWSEGAIYNIGFERG-LNEWRKYLKKGGYLAVSECSWFTDERPAEIN 163

Query: 242 KFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
            FW +    +  I              I +AG+  V 
Sbjct: 164 DFWMDAYPEIDTI--------PNQVAKIHKAGYLPVA 192

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 85  HPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
           +P   + Y + + ++      +        +++L D +  +  K+L+ G G G    Y  
Sbjct: 12  NPAHSENYAQRWRNL------AAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGY-L 64

Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV---GT 201
           +     VLG D +  +  YA+     A       +++        +S+   D +V     
Sbjct: 65  SKQGHDVLGTDLDPILIDYAKQDFPEA-------RWVVGDLSVDQISETDFDLIVSAGNV 117

Query: 202 LVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
           +   +    +  L  + R L   G  + 
Sbjct: 118 MGFLAEDGREPALANIHRALGADGRAVI 145

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 81.5 bits (201), Expect = 5e-18
 Identities = 38/235 (16%), Positives = 66/235 (28%), Gaps = 33/235 (14%)

Query: 46  GSRRHFIQGASTALFPLVYSST-----PSSASSPSDSMAMLNRLHPPRPDWYEEFYASVM 100
           GS  H    +   L P    S      P         +A +        D+Y+E  A   
Sbjct: 2   GSSHHHHHHSG-GLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLC-DFYDEGAADTY 59

Query: 101 NSSMKS--YEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158
              ++     +E      +        +  VLE+  G G  L +   D   +V  ++ + 
Sbjct: 60  RDLIQDADGTSEAR----EFATRTGPVSGPVLELAAGMG-RLTFPFLDLGWEVTALELST 114

Query: 159 KMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDAVV---GTLVLCSVKDVDMTL 214
            +    +     A   +      +Q    A  + D     VV   G++      D     
Sbjct: 115 SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLY 173

Query: 215 QEVRRVLKPGGIYLF--------------VEHVAAKDGTFLKFWQNVVDPLQQIV 255
             VR  L+PGG +L                +                  P ++I 
Sbjct: 174 ASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ 228

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 33/189 (17%)

Query: 90  DWYEEFYASV----MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA 145
             YE  +A V         K Y AE A   + L  +   +A  +L++  GTG +L+++  
Sbjct: 2   HMYEVDHADVYDLFYLGRGKDYAAE-ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTK 60

Query: 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--- 202
           +      G++ +  M  +A+           +    Q       +      AVV      
Sbjct: 61  E-FGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVSMFSSV 111

Query: 203 -VLCSVKDVDMTLQEVRRVLKPGGIYLF---------------VEHVAAKDGTFLKFWQN 246
             L + +++   +      L+PGG+ +                 + V     T  +   +
Sbjct: 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHS 171

Query: 247 VVDPLQQIV 255
           V +     +
Sbjct: 172 VREGNATRM 180

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 78.8 bits (194), Expect = 4e-17
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
            +++ G G G              +  G+D    +   A+           + +FL+   
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDA 81

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE-------------H 232
             I ++D   D  +    L  +   +  LQ++   +K GG  +  E              
Sbjct: 82  TEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDG 140

Query: 233 VAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
               +   L   Q + +   Q      ++  +    +SE G  ++E
Sbjct: 141 EKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIE 186

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 32/200 (16%)

Query: 78  MAMLNRLHPPRPDWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGI 134
           MA  +    P+ D+  E    Y  V     K Y  E A   + L      KA  +L++  
Sbjct: 1   MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHRE-AADLAALVRRHSPKAASLLDVAC 59

Query: 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194
           GTG +L++ A      V G++ +  M   A+     A                  +    
Sbjct: 60  GTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPDA-------VLHHGDMRDFSL-GRR 110

Query: 195 VDAVVGTL----VLCSVKDVDMTLQEVRRVLKPGGIYLF---------------VEHVAA 235
             AV         L    ++D  L+     + P G+ +                   V A
Sbjct: 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEA 170

Query: 236 KDGTFLKFWQNVVDPLQQIV 255
              T  +   +  +     +
Sbjct: 171 GGTTVTRVSHSSREGEATRI 190

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 21/144 (14%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
             Y+E    V       Y   VA    Q+        K++ +IG GTG      A     
Sbjct: 9   YVYDELMQDVP------YPEWVAWVLEQV-----EPGKRIADIGCGTGTATLLLADH--Y 55

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV----GTLVLC 205
           +V GVD + +M + AQ  A+     +    F       + + +  VDA+         L 
Sbjct: 56  EVTGVDLSEEMLEIAQEKAMETNRHVD---FWVQDMRELELPE-PVDAITILCDSLNYLQ 111

Query: 206 SVKDVDMTLQEVRRVLKPGGIYLF 229
           +  DV  T     R+L  GG  LF
Sbjct: 112 TEADVKQTFDSAARLLTDGGKLLF 135

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 105 KSYEAEVAGYKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAADTDV--QVLGVDPNR 158
           + Y +    Y S  +  +     G+ K ++++G G G      A +     Q++G D + 
Sbjct: 12  ERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA 71

Query: 159 KMEKYAQTAAVAAGLPLTNFKFLQAVGE------AIPVSDASVDAVVGTLVLCSVKDVDM 212
            M K A+     +     N  F  +  +      A  V    +D +          D + 
Sbjct: 72  TMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEK 130

Query: 213 TLQEVRRVLKPGGIYLF 229
             +     L+  G    
Sbjct: 131 FQRSAYANLRKDGTIAI 147

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 27/186 (14%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
           + Y +F   Y  ++ +    Y+     +  +            L++  GTG   +     
Sbjct: 1   NCYNKFAHIYDKLIRAD-VDYKKWSD-FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL---- 202
                  VD +++M   A+    + GL     +        + + +   D +   L    
Sbjct: 59  -FKNTWAVDLSQEMLSEAENKFRSQGLKP---RLACQDISNLNI-NRKFDLITCCLDSTN 113

Query: 203 VLCSVKDVDMTLQEVRRVLKPGGIYLF-------------VEHVAAKDGTFLKFWQNVVD 249
            +    D+    + V   LK GG+++F                    D     +W+N  +
Sbjct: 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFE 173

Query: 250 PLQQIV 255
                +
Sbjct: 174 DDLVSM 179

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 75.3 bits (185), Expect = 3e-16
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
             Y+  +   M+S+  +    +                 VLE+  GTG   ++  +    
Sbjct: 20  SEYDATFVPYMDSAAPAALERLRA---------GNIRGDVLELASGTGYWTRH-LSGLAD 69

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           +V  +D + +M       A A    L N +F Q         D   DAV     L  V D
Sbjct: 70  RVTALDGSAEM------IAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAHVPD 122

Query: 210 VDM--TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLT 262
                  + VR  + PGG+  FV+    +     +        +++ + DG    
Sbjct: 123 DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFR 177

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 80  MLNRLHPPRPDWYE---EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKA-KKVLEIGIG 135
           M N       D +    + +   +         +V      +   + G+  ++VL++G G
Sbjct: 6   MRNPEDALL-DSWHQNAQAWIDAVRHGAIESRRQVTDQA--ILLAILGRQPERVLDLGCG 62

Query: 136 TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195
            G  L+   AD  ++ +GVD +R +   A+ A            + Q     +PV     
Sbjct: 63  EGWLLRA-LADRGIEAVGVDGDRTLVDAARAAGAGEVH---LASYAQLAEAKVPV-GKDY 117

Query: 196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF-VEH-VAAKDGTFLKFWQNVVDPLQQ 253
           D +     L    D+   L  +R +L PGG  +    H  +  DG +   W+   +    
Sbjct: 118 DLICANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWR--EESFAG 174

Query: 254 IVSDG-----CHLTRQT-GNNISEAGFSSVEL 279
              D         T  +  N +  AG   V L
Sbjct: 175 FAGDWQPMPWYFRTLASWLNALDMAGLRLVSL 206

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 74.8 bits (184), Expect = 7e-16
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 8/153 (5%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           ++L++G G+G  L  +A D  +   G+D +      A+  A   G+      F+      
Sbjct: 39  RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAG 97

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
              ++   D                  + + + LKPGGI L  E    +     +  Q  
Sbjct: 98  YV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQAC 156

Query: 248 VDPLQQIVSDGCHLT-RQTGNNISEAGFSSVEL 279
                 + S    LT         + G+  VE+
Sbjct: 157 -----GVSSTSDFLTLPGLVGAFDDLGYDVVEM 184

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 34/226 (15%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKS------YEAEVAGYKSQLFDNLRGKAKKVLE 131
           MA   R        Y E +   +N S +        + ++ G   ++ D       K+L 
Sbjct: 1   MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDT--KSEIKILS 58

Query: 132 IGIGTG-------PNLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQA 183
           IG G G         ++       +    V+P+ +   KY +  A  + L    F + + 
Sbjct: 59  IGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKE 118

Query: 184 VGEAI------PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
                             D +    +L  VKD+  TL+    +L      + +  V+   
Sbjct: 119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA-KMLIIVVSGSS 177

Query: 238 G---TFLKFWQNVVDPLQQIVSDGC-HLTRQTGNNI-SEAGFSSVE 278
           G    + K+             D C ++T      +    G     
Sbjct: 178 GWDKLWKKYGSRFPQD------DLCQYITSDDLTQMLDNLGLKYEC 217

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 74.0 bits (181), Expect = 4e-15
 Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 41/263 (15%)

Query: 41  KSCCCGSRRHFIQGASTALFPLV---YSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYA 97
            SC  G ++    G++ ++   V   Y  T     S +D      +L    P+ + +  A
Sbjct: 3   CSCASGCQKSKNGGSTPSIRDHVADYYGKT---LQSSADLKTSACKLAAAVPESHRKILA 59

Query: 98  SVMNSSMKSYEAEVAGYK-SQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADT---DVQVL 152
            + +      E     Y                VL++G GTG    Y A+       +V+
Sbjct: 60  DIAD------EVLEKFYGCGSTLPADGSLEGATVLDLGCGTG-RDVYLASKLVGEHGKVI 112

Query: 153 GVDPNRKMEKYAQTAA------VAAGLPLTNFKFLQAVGEAI------PVSDASVDAVVG 200
           GVD      + A+                +N +FL+   E +       V D+SVD V+ 
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

Query: 201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCH 260
             V     +     +E+ RVL+ GG   F +  A +  +       ++          C 
Sbjct: 173 NCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY-------GECL 225

Query: 261 LTRQTGNN----ISEAGFSSVEL 279
                  +    ++EAGF  V L
Sbjct: 226 GGALYLEDFRRLVAEAGFRDVRL 248

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT---NFKFLQA 183
            ++L+IG G+G  +    A     V G+D N +  + A+TAA + GL        +F   
Sbjct: 32  DEILDIGCGSG-KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90

Query: 184 VGEAIPVSDASVDAVV---GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF 240
              ++   D+S D  V       +   K+    ++EV RVLKPG     VE         
Sbjct: 91  NASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE--------- 141

Query: 241 LKFWQNVVDPLQQI 254
             F QN    L + 
Sbjct: 142 --FGQNWHLKLYRK 153

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 20/183 (10%)

Query: 80  MLNRLHPPRPDWYE---EFYASV---MNSSMKSY----EAEVAGYKSQLFDNLRGKAKKV 129
           +   L+ P   WY    E++ +V   ++  +       + ++ G ++ +         + 
Sbjct: 38  LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA 97

Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           L+ G G G   K            ++P + M + A+             KF+ A  E   
Sbjct: 98  LDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP----VGKFILASMETAT 153

Query: 190 VSDASVDAVVGTLVLCSVKDVDMT--LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV 247
           +   + D +V       + D D     +  ++ L P G   F E+ +  D     F  + 
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR----FLVDK 209

Query: 248 VDP 250
            D 
Sbjct: 210 EDS 212

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
             G    +L++G GTG    +  A    Q+ G++P  ++ + A+           +  F 
Sbjct: 38  ATGVDGVILDVGSGTGRWTGH-LASLGHQIEGLEPATRLVELARQT-------HPSVTFH 89

Query: 182 QAVGEAIPVSDASVDAVVGTLVL--CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT 239
                 +  S      ++    L      ++   L  +R  ++ GG  L           
Sbjct: 90  HGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP 149

Query: 240 F 240
            
Sbjct: 150 M 150

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
           +   +L++G GTG    +      +     VD + KM + A+             K+++A
Sbjct: 44  ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG----NLKVKYIEA 99

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241
                   +   D VV  L +  ++D D     +    +LK  GI++  + V  +     
Sbjct: 100 DYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE 158

Query: 242 KFWQNV 247
              + +
Sbjct: 159 NLNKTI 164

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 15/158 (9%)

Query: 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
           +      L+ G G G   K        +V  VD        A+T     G       +  
Sbjct: 77  KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR--VRNYFC 134

Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKDVDMT--LQEVRRVLKPGGIYLFVEHVAAKDGTF 240
              +       S D +    V+  + D  +   L+  +  L+P GI +  +++A +    
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194

Query: 241 LKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE 278
                +V   L  +              I  AG S + 
Sbjct: 195 DDVDSSVCRDLDVVRR-----------IICSAGLSLLA 221

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 29/199 (14%)

Query: 103 SMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKY--YAADTDVQVLGVDPNRKM 160
           ++ +       ++  L  +LR     V  +  G    L    Y+A   VQ++G+D + + 
Sbjct: 97  AVLATRERHGHFRRALQRHLR-PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA 155

Query: 161 EKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD---VDMTLQEV 217
              A   A    L        +     +   +   D +    +     D   V    +  
Sbjct: 156 LDGATRLAAGHALA-GQITLHRQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRF 213

Query: 218 RRVLKPGGIYLFVEHVAAKDGTFLKFWQN-----------------VVDPLQQIVSDGCH 260
            + LKPGG  +          +    W                   ++ P    +     
Sbjct: 214 WQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273

Query: 261 LTRQTGNNISEAGFSSVEL 279
              Q    + EAGF+ +  
Sbjct: 274 TRAQ----LEEAGFTDLRF 288

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 13/135 (9%)

Query: 100 MNSSMKSYEAEVAGY-----KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGV 154
           MNS   S   E +G+        L  +++ + K+VL+IG  +G        +   +V G+
Sbjct: 2   MNSPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAA-IKENGTRVSGI 60

Query: 155 DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
           +   +  + A+           +          +P  +   D V+   VL  + D    +
Sbjct: 61  EAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVI 113

Query: 215 QEVRRVLKPGGIYLF 229
           ++V+  +K  G+ L 
Sbjct: 114 EKVKPYIKQNGVILA 128

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 89  PDWY-EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAAD 146
           PD Y +   A V    +    +  A YK+ L   LR     +VL++  GTG        +
Sbjct: 19  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTG-VDSIMLVE 77

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-----DASVDAVV-- 199
               V  VD + KM KYA              K++      + +          DAV+  
Sbjct: 78  EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 137

Query: 200 ----GTL--VLCSVKDVDMTLQEVRRVLKPGGIYLF 229
                 L        +  + L+ +  +++PGG+ + 
Sbjct: 138 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 68.9 bits (168), Expect = 7e-14
 Identities = 23/176 (13%), Positives = 59/176 (33%), Gaps = 10/176 (5%)

Query: 76  DSMAMLNRLHPPRPDWYEEFYASVMNSSMKSY----EAEVAGYKSQLFDNLRGKAKKVLE 131
           + ++ + +      D +E+++   + +S                   F+ L      +++
Sbjct: 3   EKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLID 62

Query: 132 IGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191
              G G   K+ +     +V+G+D ++   + A     AA +            +A  + 
Sbjct: 63  FACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISY-RLLDGLVPEQAAQIH 120

Query: 192 DASVDAVV---GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244
               DA +          V+  ++  Q +R +L   G  +++  +      F    
Sbjct: 121 SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQG-AMYLIELGTGCIDFFNSL 175

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 66.8 bits (163), Expect = 7e-13
 Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 27/208 (12%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGY-------KSQLFDNLRGKAK---KVLEIGIGTGPN 139
                  A++ +     YE +V          +++   +  G+A     +++ G G G +
Sbjct: 72  GIGPVDRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGS 131

Query: 140 LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAV 198
           +         +V GV  +     +    A    +      +         P    +V A 
Sbjct: 132 MVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDTPFDKGAVTAS 189

Query: 199 -----VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ 253
                          D+     E  R LK GG Y+ +             W + ++    
Sbjct: 190 WNNESTM------YVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQIN--AH 241

Query: 254 IVSDGCHLTRQTGNNISEAGFSSVELGN 281
              +     R+    +++       + +
Sbjct: 242 FECNIHSR-REYLRAMADNRLVPHTIVD 268

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 22/114 (19%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 128 KVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVA------AGL-PLTNF 178
           K+LEIG G G      A        V G+D          T   A        L      
Sbjct: 46  KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105

Query: 179 KFLQAVGEA-IPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
            F   + +   P++D   D VV    L      +      + +          E
Sbjct: 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE 159

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 16/152 (10%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTD 148
              E ++           + E+    S++ + ++  K  K L++G G G N  Y  A   
Sbjct: 5   IRDENYFTD---------KYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLY-LAANG 54

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV- 207
             V   D N       +       L   N          +   D   D ++ T+VL  + 
Sbjct: 55  YDVDAWDKNAMSIANVERIKSIENLD--NLHTRVVDLNNLTF-DRQYDFILSTVVLMFLE 111

Query: 208 -KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG 238
            K +   +  ++R  KPGG  L V  +   D 
Sbjct: 112 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADY 143

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK---F 180
            AKKV+++G G G  L     D +  Q+ GVD +  + + A+       LP    K    
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88

Query: 181 LQAVGEAIPVSDASVDAVVGTLVL--CSVKDVDMTLQEVRRVLKPGGI 226
            Q+         +  DA     V+       +    + +    +P  +
Sbjct: 89  FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV 136

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165
             + V  Y   L   L     + +L++G GTG  L    A +  +VLG D    M + A+
Sbjct: 38  KHSFVWQYGEDLLQLLNPQPGEFILDLGCGTG-QLTEKIAQSGAEVLGTDNAATMIEKAR 96

Query: 166 TAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGG 225
                      +  F  A      V D  +DAV    +L  VK+ +  +  + + LK GG
Sbjct: 97  QN-------YPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGG 148

Query: 226 IYLF 229
            ++ 
Sbjct: 149 RFVA 152

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
             ++VL+IG G G  L+    +  ++ +GVD N  M K+ +         +     ++  
Sbjct: 41  GCRRVLDIGCGRGEFLEL-CKEEGIESIGVDINEDMIKFCE-----GKFNVVKSDAIE-- 92

Query: 185 GEAIPVSDASVDAVVGTLVL--CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK 242
                + D  +D V+ +  +     + +   L      +K    Y+ +E       +   
Sbjct: 93  -YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSS-YIVIESPNPT--SLYS 148

Query: 243 FWQNVVDPLQQIVSDGCHLTRQTGNNI-SEAGFSSVEL 279
                +DP  +       +  +T   I    GF  V++
Sbjct: 149 LINFYIDPTHK-----KPVHPETLKFILEYLGFRDVKI 181

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           ++E ++     S   Y  E   +   + + +     K+L +  G G N  + A+    +V
Sbjct: 2   WDERFSQ----SEYVYGTEPNDFLVSVANQIPQG--KILCLAEGEGRNACFLASL-GYEV 54

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
             VD +      A+  A   G+ +T    +Q+      +   + + +V            
Sbjct: 55  TAVDQSSVGLAKAKQLAQEKGVKIT---TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQ 111

Query: 212 MTLQEVRRVLKPGGIYLFVEH 232
               +V + LKPGG+++    
Sbjct: 112 QLYPKVYQGLKPGGVFILEGF 132

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 60.8 bits (147), Expect = 4e-11
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 20/148 (13%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYK-----SQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
           + Y+   A  +      +   ++G             L     +VLE G G GP+   + 
Sbjct: 9   ESYDRL-ARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFG 67

Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV-DAVVGTLV 203
                +    D + ++ K A+  A  A +      +       +P    +    +V    
Sbjct: 68  PQAA-RWAAYDFSPELLKLARANAPHADV------YEWNGKGELPAGLGAPFGLIV---- 116

Query: 204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
             S +     +  +  +  P   +L+V 
Sbjct: 117 --SRRGPTSVILRLPELAAPDAHFLYVG 142

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 26/152 (17%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQ---------LFDNLRGKAKKVLEIGIGTGPN 139
           PD  + F     + +++ Y      Y  +             L   AK +LE+G G G  
Sbjct: 3   PDMTQAFD----DDTLRFYRGNATAYAERQPRSATLTKFLGELPAGAK-ILELGCGAGYQ 57

Query: 140 LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199
            +         V   D + ++   A  A+   G P+    F Q        +  + DAV 
Sbjct: 58  AEAML-AAGFDVDATDGSPEL---AAEASRRLGRPVRTMLFHQ------LDAIDAYDAVW 107

Query: 200 GTLVLCSV--KDVDMTLQEVRRVLKPGGIYLF 229
               L  V   ++   L+ + R LKPGG++  
Sbjct: 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYA 139

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 115 KSQLFDNLRGKAKK--------VLEIGIGTGPNLKYYA-ADTDVQVLGVDPN----RKME 161
            ++  D  + +  +         +++G G G N+   A  D +   +G+DP       + 
Sbjct: 6   GTKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDIS 65

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASVDAVVGTLVLCSVKDVDMTLQ 215
           K         GL   N  F+ A  E++P          S+    GTL+   +K     L 
Sbjct: 66  KKIIKKPSKGGLS--NVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILS 123

Query: 216 EVRRVLKPGG-IYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF 274
            V  + K          +  + +   +K       PL   +S    L+ Q    +S +GF
Sbjct: 124 NVADLAKKEAHFEFVTTYSDSYEEAEIKKRG---LPL---LSKAYFLSEQYKAELSNSGF 177

Query: 275 SSVEL 279
              ++
Sbjct: 178 RIDDV 182

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL 175
           QL + L  KA  VL+IG G G     +A A  ++   G+D ++   K A     A   P 
Sbjct: 77  QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA-----AKRYP- 130

Query: 176 TNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV 230
               F  A    +P SD S+DA++     C         +E+ RV+KPGG  +  
Sbjct: 131 -QVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITA 177

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 57.9 bits (139), Expect = 8e-10
 Identities = 15/149 (10%), Positives = 43/149 (28%), Gaps = 13/149 (8%)

Query: 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
           ++ + IG G  P      +    ++V  V+    + + ++   V  GL +     +    
Sbjct: 124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSR--KVIEGLGVDGVNVITGDE 181

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ 245
             I   +   D +   +V    +      + + R +      ++  +   +         
Sbjct: 182 TVIDGLEF--DVL---MVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRA-----ILY 231

Query: 246 NVVDPLQQIVSDGCHLTRQTGNNISEAGF 274
             V            +   +G   + +  
Sbjct: 232 APVSDDDITGFRRAGVVLPSGKVNNTSVL 260

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 16/157 (10%)

Query: 110 EVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168
           E   +   L  +L  G     LEIG   G   +  A     ++  +D   +    A    
Sbjct: 35  ERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRT 93

Query: 169 VAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM---TLQEVRRVLKPGG 225
                   +  +          +    D +V   VL  ++D+      +  + ++L PGG
Sbjct: 94  --KRWS--HISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGG 148

Query: 226 IYLFVEHVAAKDGTFLKFWQNVV--DPLQQIVSDGCH 260
             L             + W +V   + +  I+++   
Sbjct: 149 H-LVFGSARD---ATCRRWGHVAGAETVITILTEALT 181

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKF 180
            A++V+++G G G  LK    D    Q+ GVD + +  + AQ       LP       + 
Sbjct: 29  NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88

Query: 181 LQAVGEAIPVSDASVDAVV--GTLVLCSVKDVDMTLQEVRRVLKPGGI 226
           +Q             DA      +    +  +    + +    +P  +
Sbjct: 89  IQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
           K+ L      +   VL++G G G +L  Y      +  GVD        A+  A      
Sbjct: 54  KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTL-----VLCSVKDVDMTLQEVRRVLKPGGIYLF 229
                F         +       V+ +         + + +D+  + + R L+PGG ++ 
Sbjct: 114 -FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 105 KSYEAEVAGYKSQLFDNL------RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158
           + ++++V  +  Q  D +      R  +  V + G G        A+     V   D   
Sbjct: 41  RGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDC----RLASSIRNPVHCFD--- 93

Query: 159 KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVR 218
                         L   + +        +P+ D SVD  V  L L    ++   L+E  
Sbjct: 94  --------------LASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGT-NIRDFLEEAN 138

Query: 219 RVLKPGGIYLFVE 231
           RVLKPGG+    E
Sbjct: 139 RVLKPGGLLKVAE 151

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 53.8 bits (129), Expect = 7e-09
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
            V++   G G +  + A     + +V G D   K             L +     ++   
Sbjct: 25  TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-IDRVTLIKDGH 83

Query: 186 E-AIPVSDASVDAVVGTLVLCSVKDVDMT---------LQEVRRVLKPGGIYLFV 230
           +      D  V AV+  L      D  ++         L +   +L  GGI   V
Sbjct: 84  QNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 53.9 bits (129), Expect = 7e-09
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTD 148
            +++++ Y    +S+   +  + + +++ L   LR    ++L +G G             
Sbjct: 7   VEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELR-PEDRILVLGCGNSALSYELFLGGF 65

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV--GTL---- 202
             V  VD +  +   A   A  A +P    ++       +    AS D V+  GTL    
Sbjct: 66  PNVTSVDYSSVV--VAAMQACYAHVP--QLRWETMDVRKLDFPSASFDVVLEKGTLDALL 121

Query: 203 ---------VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH 232
                        V  VD  L EV RVL PGG ++ +  
Sbjct: 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 10/175 (5%)

Query: 65  SSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG 124
           S+  +   +P +    L++        +E+ +           +         L D    
Sbjct: 11  SNGGNVIPTPEEVATFLHK--TVEEGGWEKCWE---EEITPWDQGRATPLIVHLVDTSSL 65

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
              + L  G G G ++   A+     V+G+D +      A     ++      F F++  
Sbjct: 66  PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAE-YFSFVKED 123

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMT--LQEVRRVLKPGGIYLFVEHVAAKD 237
                 ++   D +   +  C+++        + +  +LKP G  + + +     
Sbjct: 124 VFTWRPTE-LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH 177

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 8/159 (5%)

Query: 82  NRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG-KAKKVLEIGIGTGPNL 140
           +R+     D               S +         + D  +     KVL++G G G N 
Sbjct: 76  HRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNS 135

Query: 141 KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200
            Y +      V   D N     +         L ++          A  +   + D +V 
Sbjct: 136 LYLSLL-GYDVTSWDHNENSIAFLNETKEKENLNIS---TALYDINAANI-QENYDFIVS 190

Query: 201 TLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
           T+V   +  + V   ++ ++     GG  L V  ++  D
Sbjct: 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDD 229

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Length = 416

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 96  YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVD 155
           Y S  +S M+ + A +A           G    ++EIG   G  L+    +  V+ LG +
Sbjct: 80  YHSSGSSVMREHFAMLARDFLATELT--GPDPFIVEIGCNDGIMLRTIQ-EAGVRHLGFE 136

Query: 156 PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           P+  +   A+      G+ +    F +A  + +  ++   + +     LC +  V   L+
Sbjct: 137 PSSGVAAKAR----EKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLE 192

Query: 216 EVRRVLKPGGIYLFVEH 232
            V  +L P G+++F + 
Sbjct: 193 GVDALLAPDGVFVFEDP 209

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 105 KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDP-NRKMEK 162
           K  +        QL          VL++G G G +    A  +    V+ +D    +MEK
Sbjct: 10  KRVQEFSDAEFEQLRSQ---YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEK 66

Query: 163 YAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC--------SVKDVDMT 213
            +  AA   A   L N  +L A  E +P   + V  +    VL          +      
Sbjct: 67  ISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGVGEL---HVLMPWGSLLRGVLGSSPEM 122

Query: 214 LQEVRRVLKPGGIYLF 229
           L+ +  V +PG  +L 
Sbjct: 123 LRGMAAVCRPGASFLV 138

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 106 SYEAEVAGYKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEK 162
            +E E       L   +  +      ++G G G N      D      + G+D +  M +
Sbjct: 13  KFEDERTRPARDLLAQVPLERVLNGYDLGCGPG-NSTELLTDRYGVNVITGIDSDDDMLE 71

Query: 163 YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLK 222
            A          L N  F +A            D +    V   V D    L ++   L+
Sbjct: 72  KAADR-------LPNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLE 123

Query: 223 PGGIYLF 229
            GG+   
Sbjct: 124 SGGVLAV 130

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 8/114 (7%)

Query: 123 RGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLP----LT 176
              A  +++ G G+G  L        +   ++GVD + K    A              + 
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778

Query: 177 NFKFLQAVGEAIPVSDASVDAVVGTLVL--CSVKDVDMTLQEVRRVLKPGGIYL 228
           +                 VD      V+            ++V  +  P  + +
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 13/124 (10%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
                +      V++  +G G N   + A    +V   D   +            G+   
Sbjct: 14  DFLAEVLDDESIVVDATMGNG-NDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI--E 70

Query: 177 NFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMT---------LQEVRRVLKPGGI 226
           N + +    E +       + A +  L      D  +          ++++   L+ GG 
Sbjct: 71  NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130

Query: 227 YLFV 230
              +
Sbjct: 131 LAIM 134

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +   +LE+G   G        +    +  V+ + +   +AQ              ++ + 
Sbjct: 42  RPGNLLELGSFKGDFTS-RLQEHFNDITCVEASEEAISHAQGRL------KDGITYIHSR 94

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVR-RVLKPGGIYLF 229
            E         D +V T VL  + D    L+ +    L  GG    
Sbjct: 95  FEDAQ-LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 36/276 (13%), Positives = 76/276 (27%), Gaps = 70/276 (25%)

Query: 37  LCG----GKSCCCGS--RRHFIQGASTALFPL-VYSSTPSSASSPSDSMAMLNRL-HPPR 88
           + G    GK+         + +Q          ++     + +SP   + ML +L +   
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQLF------------DNLR-GKAKKVLEIG-- 133
           P+W      S   S++K     +     +L              N++  KA     +   
Sbjct: 211 PNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 134 --IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191
             + T      +   TD        +  ++ ++ T        L     L+ +       
Sbjct: 268 ILLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYLD--CRPQ 316

Query: 192 DASVDAVVGTLVLCSV-----KDVDMTLQEVRRV---------------LKPGGI---Y- 227
           D   + +       S+     +D   T    + V               L+P      + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 228 ---LFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCH 260
              +F              W +V+     +V +  H
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 22/137 (16%)

Query: 115 KSQL-------FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKM-----EK 162
           KS L           + +   VL++G G G +L  +      +++  D          ++
Sbjct: 17  KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQR 76

Query: 163 YAQTAAVAAGLPLTNFKFLQA------VGEAIPVSDASVDAVVGTLVL----CSVKDVDM 212
           Y           + + +F+ A      + +         D      V      S +  DM
Sbjct: 77  YEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADM 136

Query: 213 TLQEVRRVLKPGGIYLF 229
            L+     L PGG ++ 
Sbjct: 137 MLRNACERLSPGGYFIG 153

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 39/137 (28%)

Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGL- 173
             LF     +A   LEIG G G +L   A    +   LG++          +  V A L 
Sbjct: 28  PALFGR---EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEV--------HSPGVGACLA 76

Query: 174 -----PLTNFKFLQAVGEAIPV-----SDASVDAVVGTLVLCSV---KD--------VDM 212
                 L+N + +    +A+ V      D S+  V    +       K            
Sbjct: 77  SAHEEGLSNLRVMC--HDAVEVLHKMIPDNSLRMV---QLFFPDPWHKARHNKRRIVQVP 131

Query: 213 TLQEVRRVLKPGGIYLF 229
             + V+  L+ GG++  
Sbjct: 132 FAELVKSKLQLGGVFHM 148

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 118 LFDNL-RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
           L +N+   K   +L++G G G  +    AD        D NR+  K A+       L   
Sbjct: 44  LVENVVVDKDDDILDLGCGYGV-IGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNY 102

Query: 177 NFKFLQAVGEAIPVSDASVDAVV-------GTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
           + + + +      V D   + ++       G       + +   ++E + +LK  G    
Sbjct: 103 DIRVVHSDLYE-NVKDRKYNKIITNPPIRAGK------EVLHRIIEEGKELLKDNGEIWV 155

Query: 230 V 230
           V
Sbjct: 156 V 156

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 35/168 (20%)

Query: 77  SMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGT 136
           S AM  R      +  E     V+ +       E       LF N        +E+G G 
Sbjct: 1   SNAMRVRNRKGATELLEANPQYVVLNP-----LEAKAKWRDLFGN---DNPIHVEVGSGK 52

Query: 137 GPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDA 193
           G  +   A  + D+  +G+D  + +  YA    +  G  + N K L   G  +     D 
Sbjct: 53  GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG--VPNIKLLWVDGSDLTDYFEDG 110

Query: 194 SVDAVVGTLVLCSVKDVD-----------MT----LQEVRRVLKPGGI 226
            +D +    +  S    D           +T    L   +R+L   G 
Sbjct: 111 EIDRL---YLNFS----DPWPKKRHEKRRLTYKTFLDTFKRILPENGE 151

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 42/135 (31%)

Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGL- 173
           + +F N        +E+G G G  +   A  + D+  +G++           + +   + 
Sbjct: 32  NTVFGN---DNPIHIEVGTGKGQFISGMAKQNPDINYIGIEL--------FKSVIVTAVQ 80

Query: 174 -----PLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCSVKDVD-----------MT-- 213
                   N K L    + +        V  V    +  S    D           +T  
Sbjct: 81  KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV---YLNFS----DPWPKKRHEKRRLTYS 133

Query: 214 --LQEVRRVLKPGGI 226
             L++   V+  GG 
Sbjct: 134 HFLKKYEEVMGKGGS 148

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 34/167 (20%)

Query: 83  RLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKY 142
            + P   DW  E Y        ++   +    K +          +  +IG G G  L  
Sbjct: 8   PVKPEEMDW-SELYPEFFAPLTQNQSHDDPKDKKEKRAQ---AQVEFADIGCGYGGLLVE 63

Query: 143 YA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQA-VGEAIP--VSDAS 194
            +    D  +LG++   K+  Y Q    A          N   L++   + +P       
Sbjct: 64  LSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123

Query: 195 VDAVVGTLVLCSVKDVD---------------MTLQEVRRVLKPGGI 226
           +  +     L      D                 L E   VL+ GG+
Sbjct: 124 LTKM---FFLFP----DPHFKRTKHKWRIISPTLLAEYAYVLRVGGL 163

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV---- 203
              V   D + K    A+ AA+A+GL     +FL+A    +P     VD ++        
Sbjct: 228 TSPVYAGDLDEKRLGLAREAALASGLS--WIRFLRADARHLPRFFPEVDRILANPPHGLR 285

Query: 204 LCSVKDVD----MTLQEVRRVLKPGG-IYLFVEHVAAKDGTFLKFWQ 245
           L   + +       L+    +L PGG + L     A         + 
Sbjct: 286 LGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALPPGFA 332

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 53/170 (31%)

Query: 84  LHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYY 143
           + P   DW + +                  Y     +    K   + +IG G G  +   
Sbjct: 25  VSPQDMDWSKLY-----------------PYYKNAENGQMTKKVTIADIGCGFGGLMIDL 67

Query: 144 A-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP------LTNFKFLQAVGEAIPV-----S 191
           + A  +  +LG++   ++  Y +   +A            N   L+  G A+        
Sbjct: 68  SPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLR--GNAMKFLPNFFE 125

Query: 192 DASVDAVVGTLVLCSVKDVD---------------MTLQEVRRVLKPGGI 226
              +  +            D                 L E   VLK GG+
Sbjct: 126 KGQLSKM---FFCFP----DPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.94
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.92
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.91
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.91
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.9
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.9
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.89
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.89
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.89
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.89
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.89
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.89
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.89
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.89
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.88
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.88
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.88
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.88
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.88
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.88
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.88
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.88
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.88
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.87
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.87
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.87
3ocj_A	305	Putative exported protein; structural genomics, PS	99.87
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.87
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.87
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.86
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.86
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.86
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.86
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.86
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.86
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.86
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.86
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.85
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.85
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.85
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.85
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.84
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.84
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.84
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.84
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.84
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.84
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.84
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.83
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.83
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.83
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.83
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.83
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.83
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.83
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.83
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.83
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.83
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.82
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.82
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.82
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.82
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.82
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.82
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.82
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.82
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.82
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.82
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.82
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.82
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.82
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.81
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.81
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.81
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.8
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.8
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.8
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.8
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.8
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.79
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.79
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.78
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.78
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.78
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.78
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.78
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.78
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.78
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.77
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.77
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.76
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.76
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.76
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.76
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.75
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.75
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.75
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.74
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.74
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.73
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.73
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.73
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.73
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.73
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.72
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.72
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.71
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.71
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.71
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.71
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.71
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.7
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.7
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.7
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.7
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.7
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.7
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.7
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.7
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.69
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.69
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.69
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.69
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.68
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.68
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.68
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.67
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.67
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.66
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.66
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.66
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.66
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.66
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.65
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.65
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.65
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.65
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.65
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.65
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.64
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.64
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.64
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.64
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.63
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.63
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.63
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.63
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.62
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.62
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.62
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.62
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.61
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.61
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.61
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.61
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.61
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.61
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.6
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.6
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.59
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.59
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.59
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.59
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.59
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.59
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.58
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.58
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.57
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.57
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.57
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.56
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.56
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.55
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.54
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.54
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.53
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.53
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.53
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.52
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.52
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.52
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.52
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.52
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.51
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.5
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.5
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.5
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.5
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.49
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.49
2o07_A	304	Spermidine synthase; structural genomics, structur	99.48
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.48
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.47
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.47
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.47
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.47
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.47
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.47
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.47
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.46
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.45
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.45
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.45
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.45
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.44
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.44
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.43
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.43
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.42
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.41
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.38
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.37
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.37
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.36
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.35
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.33
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.31
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.31
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.3
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.29
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.28
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.27
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.24
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.21
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.18
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.16
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.13
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.11
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.11
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.11
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.1
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.09
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.07
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.05
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.05
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.04
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.02
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.96
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.94
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.92
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.88
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.87
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.86
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.84
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.83
3lkd_A	542	Type I restriction-modification system methyltrans	98.8
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.79
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.79
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.74
3khk_A	544	Type I restriction-modification system methylation	98.67
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.59
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.59
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.58
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.57
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.47
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.45
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.32
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.3
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.3
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.28
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.25
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.05
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.04
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.0
3ufb_A	530	Type I restriction-modification system methyltran	97.9
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.87
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.84
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.81
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.69
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.63
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.43
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.4
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.28
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.18
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.18
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.11
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.96
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.95
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.75
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.52
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.36
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.08
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.0
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.99
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.96
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.89
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.77
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.7
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.64
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.63
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.43
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.4
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.38
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.25
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.23
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.14
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	95.13
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.1
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.05
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.91
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.89
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.79
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.78
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.77
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.76
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.75
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.71
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.68
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.62
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.57
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.57
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.57
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.49
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.43
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.39
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.34
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.33
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.25
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.08
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.04
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.96
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.91
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.88
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.84
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.63
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.62
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.61
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.57
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.57
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.56
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.51
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.41
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.32
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.3
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.16
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.98
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.77
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.69
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.65
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.57
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	92.49
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.2
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.16
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.97
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.89
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.81
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.79
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.53
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	91.25
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.19
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.89
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.1
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	90.05
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.01
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.78
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	89.61
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.47
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.31
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.44
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	88.25
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.67
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.22
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	87.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.98
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	86.69
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.63
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.96
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	85.84
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	85.77
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.52
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	85.37
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.27
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	84.89
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	84.87
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.84
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	84.73
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.64
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	84.33
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.75
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.29
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.2
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	83.09
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	82.26
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	82.08
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.05
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	81.88
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	81.83
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	81.83
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	80.76
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	80.71
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	80.7
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	80.69
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	80.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	80.55
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	80.07

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.94  E-value=2.7e-25  Score=188.12  Aligned_cols=186  Identities=15%  Similarity=0.230  Sum_probs=140.4

Q ss_pred             HHHHHhhhhHhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHcC
Q 022248           96 YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAG  172 (300)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~~  172 (300)
                      |.+...+..+.|.. +.+.+..+......++.+|||||||+|.++..+++.   ++.+++|+|+|+.|++.|++++...+
T Consensus        42 fdd~i~rsvP~Y~~-~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~  120 (261)
T 4gek_A           42 FPDMIQRSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK  120 (261)
T ss_dssp             HHHHHHHHSTTHHH-HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC
T ss_pred             hhhhHhhcCCCHHH-HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc
Confidence            33333333445654 445566677777778999999999999999999874   56799999999999999999998877


Q ss_pred             CCCCCEEEEecccCcCCCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh
Q 022248          173 LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP  250 (300)
Q Consensus       173 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  250 (300)
                      .. .+++|+++|+.+++++  .||+|++.++++++++.  ..++++++++|||||+|++.+.....+......+......
T Consensus       121 ~~-~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~  197 (261)
T 4gek_A          121 AP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHD  197 (261)
T ss_dssp             CS-SCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHH
T ss_pred             cC-ceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHH
Confidence            64 5899999999998864  69999999999999644  5789999999999999999998776665444443322211


Q ss_pred             hhhh----------------hcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          251 LQQI----------------VSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       251 ~~~~----------------~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ....                ......+.+++.++|+++||+.|++....++
T Consensus       198 ~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~n  248 (261)
T 4gek_A          198 FKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFN  248 (261)
T ss_dssp             HHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETT
T ss_pred             HHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEecc
Confidence            1100                0012346788999999999999988765554

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.92  E-value=1.7e-23  Score=172.24  Aligned_cols=168  Identities=20%  Similarity=0.212  Sum_probs=130.9

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      .....+++.+..++.+|||+|||+|.++..+++.++.+++|+|+++.+++.|++++...++. +++.++.+|+.++++++
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCSSCT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc-CceEEEEcCHHHCCCCc
Confidence            34445555555444599999999999999998776779999999999999999999988764 58999999999999999


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh----hhhhh--hcCCcccchHHH
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD----PLQQI--VSDGCHLTRQTG  266 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~  266 (300)
                      ++||+|++..+++|+++...+++++.++|||||++++.+.....  .....+...+.    .....  .....++.+++.
T Consensus       110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK--ELRDSISAEMIRKNPDWKEFNRKNISQENVERFQ  187 (219)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH--HHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHH
T ss_pred             ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH--HHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHH
Confidence            99999999999999999999999999999999999998754432  22221111111    11110  122345678999


Q ss_pred             HHHHhcCCcEEEEeeec
Q 022248          267 NNISEAGFSSVELGNAF  283 (300)
Q Consensus       267 ~~l~~aGf~~v~~~~~~  283 (300)
                      ++|+++||+.+++....
T Consensus       188 ~~l~~aGf~~v~~~~~~  204 (219)
T 3dlc_A          188 NVLDEIGISSYEIILGD  204 (219)
T ss_dssp             HHHHHHTCSSEEEEEET
T ss_pred             HHHHHcCCCeEEEEecC
Confidence            99999999998887543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.91  E-value=3.2e-23  Score=175.58  Aligned_cols=157  Identities=22%  Similarity=0.289  Sum_probs=127.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++.. .+++|+|+|+.+++.|++++...++.  ++.++.+|++.+++++++||+|++..+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~~~~~~fD~V~~~~~  112 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIA  112 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence            467899999999999999998754 49999999999999999999888764  899999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|++++..+++++.++|||||++++.+...........++.. ........+...++.+++.++|+++||+.+.+....
T Consensus       113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  191 (260)
T 1vl5_A          113 AHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY-VEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH  191 (260)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHH-HHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHH-HHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence            9999999999999999999999999988665444333322222 111111223346678899999999999988887654


Q ss_pred             c
Q 022248          284 L  284 (300)
Q Consensus       284 ~  284 (300)
                      .
T Consensus       192 ~  192 (260)
T 1vl5_A          192 K  192 (260)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.91  E-value=1.2e-23  Score=179.50  Aligned_cols=169  Identities=23%  Similarity=0.242  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .......+++.+. .++.+|||||||+|.++..+++..+.+++|+|+|+.+++.+++++...++. +++.++.+|+..++
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~  124 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLP  124 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCC
Confidence            3445555666554 567899999999999999998755789999999999999999999888774 57999999999999


Q ss_pred             CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248          190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGN  267 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (300)
                      +++++||+|++..+++|+++...+++++.++|||||++++.+.......  .....+....   .........+.+++.+
T Consensus       125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  201 (273)
T 3bus_A          125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR---AGGGVLSLGGIDEYES  201 (273)
T ss_dssp             SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH---HHHTCCCCCCHHHHHH
T ss_pred             CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH---hhcCccCCCCHHHHHH
Confidence            9889999999999999999999999999999999999999987653321  1111222111   1112345678899999


Q ss_pred             HHHhcCCcEEEEeeec
Q 022248          268 NISEAGFSSVELGNAF  283 (300)
Q Consensus       268 ~l~~aGf~~v~~~~~~  283 (300)
                      +|+++||++++++...
T Consensus       202 ~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          202 DVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHTTCEEEEEEECH
T ss_pred             HHHHcCCeEEEEEECc
Confidence            9999999998887643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.90  E-value=7.5e-23  Score=175.68  Aligned_cols=170  Identities=22%  Similarity=0.220  Sum_probs=131.4

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS  191 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~  191 (300)
                      ..+..++..+..++.+|||||||+|.++..+++. +.+++|+|+++.+++.|++++...++. +++.++.+|+.+++ +.
T Consensus        56 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~  133 (285)
T 4htf_A           56 QDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVASHL  133 (285)
T ss_dssp             HHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTGGGC
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhhhhc
Confidence            3455566666666789999999999999999876 779999999999999999999887764 58999999999987 77


Q ss_pred             CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH----HHhhhhh-----hhhhcCCcccc
Q 022248          192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW----QNVVDPL-----QQIVSDGCHLT  262 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~  262 (300)
                      +++||+|++..++++++++..+++++.++|||||++++..+...... .....    .......     ........++.
T Consensus       134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (285)
T 4htf_A          134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLL-MHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP  212 (285)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHH-HHHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred             CCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHH-HHHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence            89999999999999999999999999999999999999886543210 00000    0000000     01111245678


Q ss_pred             hHHHHHHHhcCCcEEEEeeeccC
Q 022248          263 RQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      +++.++|+++||+++++......
T Consensus       213 ~~l~~~l~~aGf~v~~~~~~~~~  235 (285)
T 4htf_A          213 TQVYLWLEEAGWQIMGKTGVRVF  235 (285)
T ss_dssp             HHHHHHHHHTTCEEEEEEEESSS
T ss_pred             HHHHHHHHHCCCceeeeeeEEEe
Confidence            99999999999999988866543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.90  E-value=2.3e-22  Score=168.32  Aligned_cols=157  Identities=25%  Similarity=0.369  Sum_probs=128.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++.. .+++|+|+++.+++.+++++...++.  ++.++.+|++.+++++++||+|++..+
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~   96 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPFPDDSFDIITCRYA   96 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEecccccCCCCCCcEEEEEECCc
Confidence            577899999999999999998753 59999999999999999999887764  899999999999998899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|+++...+++++.++|||||++++.+...........++.. ........+...++.+++.++|+++||+.+.+....
T Consensus        97 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~  175 (239)
T 1xxl_A           97 AHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNH-LNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  175 (239)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHH-HHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHH-HHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence            9999999999999999999999999998766544333333221 111111222345678899999999999988887654


Q ss_pred             c
Q 022248          284 L  284 (300)
Q Consensus       284 ~  284 (300)
                      .
T Consensus       176 ~  176 (239)
T 1xxl_A          176 L  176 (239)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.89  E-value=1.1e-22  Score=173.09  Aligned_cols=158  Identities=19%  Similarity=0.222  Sum_probs=129.4

Q ss_pred             HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ..++..+.  .++.+|||||||+|.++..+++.+..+++|+|+++.+++.|+++++..++. ++++++.+|+.+++++++
T Consensus        35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  113 (267)
T 3kkz_A           35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPFRNE  113 (267)
T ss_dssp             HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCCTT
T ss_pred             HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCCCCC
Confidence            33444443  567899999999999999999876679999999999999999999988875 579999999999998889


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc---hHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      +||+|++..+++++ +...+++++.++|||||++++.+.......   .....+...        .....+.+++.++|+
T Consensus       114 ~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~  184 (267)
T 3kkz_A          114 ELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDA--------YPEIDTIPNQVAKIH  184 (267)
T ss_dssp             CEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHH--------CTTCEEHHHHHHHHH
T ss_pred             CEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHh--------CCCCCCHHHHHHHHH
Confidence            99999999999999 899999999999999999999986543222   222222111        224567789999999


Q ss_pred             hcCCcEEEEeeec
Q 022248          271 EAGFSSVELGNAF  283 (300)
Q Consensus       271 ~aGf~~v~~~~~~  283 (300)
                      ++||+++++....
T Consensus       185 ~aGf~~v~~~~~~  197 (267)
T 3kkz_A          185 KAGYLPVATFILP  197 (267)
T ss_dssp             HTTEEEEEEEECC
T ss_pred             HCCCEEEEEEECC
Confidence            9999999887543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.89  E-value=2.9e-22  Score=173.03  Aligned_cols=164  Identities=18%  Similarity=0.164  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHhh----c-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc
Q 022248          111 VAGYKSQLFDNL----R-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG  185 (300)
Q Consensus       111 ~~~~~~~~~~~~----~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~  185 (300)
                      .......++..+    . .++.+|||||||+|.++..+++..+.+++|+|+++.+++.|+++....++. +++.++.+|+
T Consensus        63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~  141 (297)
T 2o57_A           63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCT
T ss_pred             HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEcCc
Confidence            334445555555    3 567899999999999999998754679999999999999999999888774 5899999999


Q ss_pred             CcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc---hHHHHHHHhhhhhhhhhcCCcccc
Q 022248          186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFLKFWQNVVDPLQQIVSDGCHLT  262 (300)
Q Consensus       186 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  262 (300)
                      ..+|+++++||+|++..+++|++++..+++++.++|||||++++.++......   ....++..       .......+.
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  214 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR-------IKLHDMGSL  214 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH-------HTCSSCCCH
T ss_pred             ccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHH-------hcCCCCCCH
Confidence            99999999999999999999999999999999999999999999986553321   11111111       112235577


Q ss_pred             hHHHHHHHhcCCcEEEEeee
Q 022248          263 RQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +++.++|+++||+++++...
T Consensus       215 ~~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          215 GLYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             HHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHCCCeEEEEEEC
Confidence            89999999999999988754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.89  E-value=2.6e-22  Score=167.27  Aligned_cols=158  Identities=20%  Similarity=0.224  Sum_probs=124.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++. ++.+++|+|+++.+++.|++++...+    ++.++++|+..++++ ++||+|++..
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~~-~~fD~v~~~~  117 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYDFE-EKYDMVVSAL  117 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccCCC-CCceEEEEeC
Confidence            46789999999999999999874 47899999999999999998864432    799999999999877 8999999999


Q ss_pred             cccCcccHH--HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh---------------hhhhcCCcccchHH
Q 022248          203 VLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL---------------QQIVSDGCHLTRQT  265 (300)
Q Consensus       203 ~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  265 (300)
                      +++++++..  .+++++.++|||||++++.+................+...               ........++.+++
T Consensus       118 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (234)
T 3dtn_A          118 SIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQ  197 (234)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHH
Confidence            999998765  5899999999999999999977665543332222211110               11122344677899


Q ss_pred             HHHHHhcCCcEEEEeeeccCC
Q 022248          266 GNNISEAGFSSVELGNAFLSN  286 (300)
Q Consensus       266 ~~~l~~aGf~~v~~~~~~~~~  286 (300)
                      .++|+++||+.+++......+
T Consensus       198 ~~ll~~aGF~~v~~~~~~~~~  218 (234)
T 3dtn_A          198 LNWLKEAGFRDVSCIYKYYQF  218 (234)
T ss_dssp             HHHHHHTTCEEEEEEEEETTE
T ss_pred             HHHHHHcCCCceeeeeeecce
Confidence            999999999999998665553

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.89  E-value=1.2e-22  Score=167.72  Aligned_cols=151  Identities=19%  Similarity=0.260  Sum_probs=119.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++..      .++.++.+|+..++++ ++||+|++..+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~~~  115 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVSTYA  115 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEECcc
Confidence            46789999999999999999875 6799999999999999998753      3789999999999887 99999999999


Q ss_pred             ccCcccHHH--HHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh-----hhhhcCCcccchHHHHHHHhcCCcE
Q 022248          204 LCSVKDVDM--TLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-----QQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       204 l~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      ++++++...  +++++.++|||||.+++.++...................     .......+++.+++.++|+++||++
T Consensus       116 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  195 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV  195 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence            999998876  999999999999999999866544333322222221111     1111234557889999999999997


Q ss_pred             EEEeee
Q 022248          277 VELGNA  282 (300)
Q Consensus       277 v~~~~~  282 (300)
                      +.....
T Consensus       196 ~~~~~~  201 (220)
T 3hnr_A          196 TFTRLN  201 (220)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            776643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.89  E-value=5e-22  Score=169.65  Aligned_cols=158  Identities=25%  Similarity=0.400  Sum_probs=128.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++. ++.+++|+|+++.+++.+++++...++.  ++.++.+|+..+++++++||+|++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK--NVKFLQANIFSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEcccccCCCCCCCeeEEEEec
Confidence            57789999999999999999874 4789999999999999999999888764  89999999999999899999999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccC------CCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA------KDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      ++++++++..+++++.++|||||++++.+....      .......++.... ..........++..++.++|+++||++
T Consensus       114 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~aGf~~  192 (276)
T 3mgg_A          114 VLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLI-RVQAYMKGNSLVGRQIYPLLQESGFEK  192 (276)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHH-HHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHH-HHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence            999999999999999999999999999875331      1223333333222 222233345566789999999999999


Q ss_pred             EEEeeecc
Q 022248          277 VELGNAFL  284 (300)
Q Consensus       277 v~~~~~~~  284 (300)
                      ++++...+
T Consensus       193 v~~~~~~~  200 (276)
T 3mgg_A          193 IRVEPRMV  200 (276)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeEEE
Confidence            99886543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.89  E-value=5.7e-22  Score=167.48  Aligned_cols=150  Identities=17%  Similarity=0.237  Sum_probs=124.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++..+.+++|+|+++.+++.+++++...++. .+++++++|+..+++++++||+|++..+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGSMDNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCCCCCCEEEEEecCh
Confidence            467899999999999999999865569999999999999999999988875 4699999999999998999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc---hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ++++ +...+++++.++|||||++++.+.......   .....+...        .....+.+++.++|+++||++++..
T Consensus       124 l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~aGf~~v~~~  194 (257)
T 3f4k_A          124 IYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA--------YPEISVIPTCIDKMERAGYTPTAHF  194 (257)
T ss_dssp             SCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHH--------CTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             Hhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHh--------CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence            9999 889999999999999999999986533222   222222221        1235678899999999999999876


Q ss_pred             eec
Q 022248          281 NAF  283 (300)
Q Consensus       281 ~~~  283 (300)
                      ...
T Consensus       195 ~~~  197 (257)
T 3f4k_A          195 ILP  197 (257)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.89  E-value=2.2e-22  Score=169.94  Aligned_cols=152  Identities=17%  Similarity=0.190  Sum_probs=123.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++..+.+++|+|+++.+++.|+++++..++. +++.++++|+.++++ +++||+|++..+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~V~~~~~  112 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYVA-NEKCDVAACVGA  112 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECChHhCCc-CCCCCEEEECCC
Confidence            567899999999999999998766779999999999999999999888874 589999999999887 789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++++++...+++++.++|||||++++.+...........+.. .+.   ........+.+++.++|+++||+.+++..
T Consensus       113 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  186 (256)
T 1nkv_A          113 TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ-ACG---VSSTSDFLTLPGLVGAFDDLGYDVVEMVL  186 (256)
T ss_dssp             GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH-TTT---CSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred             hHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH-HHh---cccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence            999999999999999999999999998865433221111111 111   11112456778999999999999887643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.89  E-value=1.3e-22  Score=169.80  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=123.4

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      ....++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++.     ...++.++.+|+..+++++++||+|++
T Consensus        49 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           49 QYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG-----EGPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             HHSCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT-----CBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             HHcCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc-----ccCCceEEEcchhcCCCCCCCccEEEE
Confidence            33457889999999999999999876 679999999999999998764     125899999999999998999999999


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ..+++|+++...+++++.++|+|||++++............ .+   ............++.+++.++++++||++++..
T Consensus       123 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          123 INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPREN-SY---PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             ESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGG-GG---GGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhh-hh---hhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            99999999999999999999999999999986554322111 01   011111122345677899999999999999987


Q ss_pred             eeccC
Q 022248          281 NAFLS  285 (300)
Q Consensus       281 ~~~~~  285 (300)
                      ..+..
T Consensus       199 ~~~~~  203 (242)
T 3l8d_A          199 GVYKR  203 (242)
T ss_dssp             EEECT
T ss_pred             ccccc
Confidence            65443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.88  E-value=7e-22  Score=171.04  Aligned_cols=166  Identities=17%  Similarity=0.136  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      ....+..+++.+. .++.+|||||||+|.++..+++..+.+++|+|+|+.+++.|++++...++. +++.++.+|+.++ 
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-  134 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQGWEEF-  134 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEEECCGGGC-
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECCHHHc-
Confidence            3445556666654 567899999999999999998864589999999999999999999988875 5899999999876 


Q ss_pred             CCCCcccEEEEcccccCcccH---------HHHHHHHHHcccCCcEEEEEecccCCCchHH--------------HHHHH
Q 022248          190 VSDASVDAVVGTLVLCSVKDV---------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL--------------KFWQN  246 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------------~~~~~  246 (300)
                        +++||+|++..+++|++++         ..+++++.++|||||++++.+..........              .++.+
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILT  212 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHH
Confidence              6899999999999999554         7899999999999999999887654322111              11211


Q ss_pred             hhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ...     ......+.+++.++++++||++++++....+
T Consensus       213 ~~~-----p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~  246 (302)
T 3hem_A          213 EIF-----PGGRLPRISQVDYYSSNAGWKVERYHRIGAN  246 (302)
T ss_dssp             HTC-----TTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred             hcC-----CCCCCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence            111     1224567889999999999999998765443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.88  E-value=9.5e-22  Score=162.12  Aligned_cols=144  Identities=21%  Similarity=0.305  Sum_probs=123.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.+++++...++.  ++.++.+|+..+++++++||+|++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~  113 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVLKSEENKIPLPDNTVDFIFMA  113 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEecccccCCCCCCCeeEEEee
Confidence            46789999999999999999874  4579999999999999999999888764  8999999999999888999999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      .+++++++...+++++.++|||||++++.++.......             .......++.+++.++++++||++++...
T Consensus       114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  180 (219)
T 3dh0_A          114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK-------------GPPPEEVYSEWEVGLILEDAGIRVGRVVE  180 (219)
T ss_dssp             SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-------------SCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc-------------CCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence            99999999999999999999999999999876543210             00111245678999999999999988865


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       181 ~  181 (219)
T 3dh0_A          181 V  181 (219)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.88  E-value=7e-22  Score=171.86  Aligned_cols=162  Identities=16%  Similarity=0.164  Sum_probs=129.7

Q ss_pred             HHHHHhhc--CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       116 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ..+++.+.  .++.+|||||||+|.++..+++..+.+++|+|+++.+++.|++++...++. ++++++.+|+++++++++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhcCCCCCC
Confidence            34444443  467899999999999999998754679999999999999999999988875 589999999999999889


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc-hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG-TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      +||+|++..+++++ +...+++++.++|||||++++.++...... ....++..    .........++.+++.++|+++
T Consensus       185 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~l~~a  259 (312)
T 3vc1_A          185 AVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQ----INAHFECNIHSRREYLRAMADN  259 (312)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHH----HHHHHTCCCCBHHHHHHHHHTT
T ss_pred             CEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHH----HHhhhcCCCCCHHHHHHHHHHC
Confidence            99999999999999 699999999999999999999886554321 11111111    1111122467789999999999


Q ss_pred             CCcEEEEeeec
Q 022248          273 GFSSVELGNAF  283 (300)
Q Consensus       273 Gf~~v~~~~~~  283 (300)
                      ||++++++...
T Consensus       260 Gf~~~~~~~~~  270 (312)
T 3vc1_A          260 RLVPHTIVDLT  270 (312)
T ss_dssp             TEEEEEEEECH
T ss_pred             CCEEEEEEeCC
Confidence            99999888654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.88  E-value=9.7e-22  Score=169.37  Aligned_cols=154  Identities=16%  Similarity=0.110  Sum_probs=111.2

Q ss_pred             CCCCeEEEECCCCChhHHHhH----h-CCCce--EEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCC------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYA----A-DTDVQ--VLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIP------  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~----~-~~~~~--~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~------  189 (300)
                      .++.+|||||||+|.++..++    . .+...  ++|+|+|+.|++.|++++... ++...++.+..+++++++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            356799999999997665432    2 24554  499999999999999988653 332113345566666543      


Q ss_pred             CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      +++++||+|++..+++|++|+..++++++++|||||++++.....  +..+...+..............+.+.+++.++|
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  208 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG--SSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML  208 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT--TSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC--CccHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence            567899999999999999999999999999999999999987543  233333333332211111123456788999999


Q ss_pred             HhcCCcEEEE
Q 022248          270 SEAGFSSVEL  279 (300)
Q Consensus       270 ~~aGf~~v~~  279 (300)
                      +++||+.+..
T Consensus       209 ~~aGf~~~~~  218 (292)
T 2aot_A          209 DNLGLKYECY  218 (292)
T ss_dssp             HHHTCCEEEE
T ss_pred             HHCCCceEEE
Confidence            9999998764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.88  E-value=9.6e-22  Score=168.90  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=127.3

Q ss_pred             HHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      ......+++.+. .++.+|||||||+|.++..+++..+.+++|+|+|+.+++.+++++...++. +++.++.+|+.+++ 
T Consensus        50 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-  127 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQFD-  127 (287)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGCC-
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCC-
Confidence            344555565554 567899999999999999998644669999999999999999999887764 58999999998776 


Q ss_pred             CCCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchH-------HHHHHHhhhhhhh--hhcCCc
Q 022248          191 SDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF-------LKFWQNVVDPLQQ--IVSDGC  259 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~  259 (300)
                        ++||+|++..+++|+  ++...+++++.++|||||++++.++........       ..........+..  ......
T Consensus       128 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (287)
T 1kpg_A          128 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  205 (287)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             --CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence              789999999999999  678999999999999999999988765432110       0000000000111  112345


Q ss_pred             ccchHHHHHHHhcCCcEEEEeeec
Q 022248          260 HLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       260 ~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      .+.+++.++++++||+++++....
T Consensus       206 ~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          206 PSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             CCHHHHHHHHHhCCcEEEEEEeCc
Confidence            678999999999999999887543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.88  E-value=1.3e-21  Score=174.70  Aligned_cols=155  Identities=26%  Similarity=0.281  Sum_probs=122.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHc-----C-CCCCCEEEEecccCcC------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-----G-LPLTNFKFLQAVGEAI------P  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~-----~-~~~~~~~~~~~d~~~~------~  189 (300)
                      .++.+|||||||+|.++..+++.  ++.+++|+|+++.+++.|+++++..     + +..+++.|+.+|++.+      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46789999999999999999874  5679999999999999999987654     3 3335899999999987      8


Q ss_pred             CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      +++++||+|++..++++++++..+++++.++|||||+|++.+.........  .... ............++.+++.++|
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~ll  238 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSE--AAQQ-DPILYGECLGGALYLEDFRRLV  238 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCH--HHHH-CHHHHHTTCTTCCBHHHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCH--hHhh-hHHHhhcccccCCCHHHHHHHH
Confidence            889999999999999999999999999999999999999988655432111  1111 1111111223456778999999


Q ss_pred             HhcCCcEEEEee
Q 022248          270 SEAGFSSVELGN  281 (300)
Q Consensus       270 ~~aGf~~v~~~~  281 (300)
                      +++||+.+++..
T Consensus       239 ~~aGF~~v~~~~  250 (383)
T 4fsd_A          239 AEAGFRDVRLVS  250 (383)
T ss_dssp             HHTTCCCEEEEE
T ss_pred             HHCCCceEEEEe
Confidence            999999876653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.88  E-value=4.8e-22  Score=168.61  Aligned_cols=161  Identities=14%  Similarity=0.214  Sum_probs=128.4

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .++.+|||||||+|.++..+++..+.+++|+|+|+.+++.++++....    +++.++.+|+..++++++
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  119 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPEN  119 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCCC
Confidence            344555544 467899999999999999998754779999999999999999875433    489999999999999899


Q ss_pred             cccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          194 SVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       194 ~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      +||+|++..+++|+  ++...+++++.++|||||++++.++...........+......    .+...++.+++.++|++
T Consensus       120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~  195 (266)
T 3ujc_A          120 NFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQ----RKYTLITVEEYADILTA  195 (266)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHH----HTCCCCCHHHHHHHHHH
T ss_pred             cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhc----CCCCCCCHHHHHHHHHH
Confidence            99999999999999  8889999999999999999999987655422222222222211    22346778899999999


Q ss_pred             cCCcEEEEeeec
Q 022248          272 AGFSSVELGNAF  283 (300)
Q Consensus       272 aGf~~v~~~~~~  283 (300)
                      +||+++++....
T Consensus       196 ~Gf~~~~~~~~~  207 (266)
T 3ujc_A          196 CNFKNVVSKDLS  207 (266)
T ss_dssp             TTCEEEEEEECH
T ss_pred             cCCeEEEEEeCC
Confidence            999999887543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.88  E-value=5.5e-22  Score=161.66  Aligned_cols=142  Identities=15%  Similarity=0.164  Sum_probs=118.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      .+.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++.       +++.++.+|+..+++++++||+|++..++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSDSPKRWAGLLAWYSL  112 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGGSCCCEEEEEEESSS
T ss_pred             CCCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccccccCCCCeEEEEehhhH
Confidence            3789999999999999999875 669999999999999999872       47899999999999888999999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +|++  +...+++++.++|||||++++..+.......+          .........++.+++.++|+++||+++++...
T Consensus       113 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  182 (203)
T 3h2b_A          113 IHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPM----------YHPVATAYRWPLPELAQALETAGFQVTSSHWD  182 (203)
T ss_dssp             TTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEE----------CCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhh----------hchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence            9997  88999999999999999999988655431110          00011123467889999999999999998866


Q ss_pred             cc
Q 022248          283 FL  284 (300)
Q Consensus       283 ~~  284 (300)
                      ..
T Consensus       183 ~~  184 (203)
T 3h2b_A          183 PR  184 (203)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.88  E-value=1.7e-21  Score=160.29  Aligned_cols=150  Identities=21%  Similarity=0.176  Sum_probs=113.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++    .+.  .++.++.+|+..+ +++++||+|++..+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~~~~~~D~v~~~~~  116 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-TPDRQWDAVFFAHW  116 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-CCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-CCCCceeEEEEech
Confidence            45679999999999999999876 6799999999999999987    333  4899999999888 77899999999999


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hhhhhhhhh--------cCCcccchHHHHHHHhc
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VVDPLQQIV--------SDGCHLTRQTGNNISEA  272 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~l~~a  272 (300)
                      ++|+++.  ..+++++.++|||||.+++.+...... .....+.. .........        ...+++.+++.++|+++
T Consensus       117 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  195 (218)
T 3ou2_A          117 LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHER-RLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTAL  195 (218)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHT
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCcc-ccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHC
Confidence            9999885  789999999999999999999776322 22221111 011111100        12345788999999999


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||+++..+..
T Consensus       196 Gf~v~~~~~~  205 (218)
T 3ou2_A          196 GWSCSVDEVH  205 (218)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCEEEeeecc
Confidence            9995555543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.87  E-value=1.6e-21  Score=163.63  Aligned_cols=152  Identities=16%  Similarity=0.101  Sum_probs=118.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++..      .++.++++|++++ .++++||+|++..++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~v~~~~~d~~~~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK------DGITYIHSRFEDA-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred             CCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhh------CCeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence            6779999999999999999864 4589999999999999998752      1789999999888 467899999999999


Q ss_pred             cCcccHHHHHHHHH-HcccCCcEEEEEecccCCCchHHHHHHHhhhhh-------hhhhcCCcccchHHHHHHHhcCCcE
Q 022248          205 CSVKDVDMTLQEVR-RVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL-------QQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       205 ~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      +|++++..+++++. ++|||||++++.++...........+...+...       ....+...++.+++.++|+++||++
T Consensus       114 ~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          114 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             HhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence            99999999999999 999999999998865533211111111111100       0112234678899999999999999


Q ss_pred             EEEeeecc
Q 022248          277 VELGNAFL  284 (300)
Q Consensus       277 v~~~~~~~  284 (300)
                      +++.....
T Consensus       194 ~~~~~~~~  201 (250)
T 2p7i_A          194 TYRSGIFF  201 (250)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeeEe
Confidence            99875444

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.87  E-value=1.5e-21  Score=163.39  Aligned_cols=146  Identities=19%  Similarity=0.151  Sum_probs=118.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..+++....+++|+|+++.+++.|++++...+.  .++.++.+|+..+++++++||+|++..++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            5789999999999999998876566999999999999999998765532  36899999999998888899999999999


Q ss_pred             cCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +++++.  ..+++++.++|||||++++.++......        .+...   ......+.+++.++|+++||+++++...
T Consensus       157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV--------ILDDV---DSSVCRDLDVVRRIICSAGLSLLAEERQ  225 (241)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE--------EEETT---TTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc--------eeccc---CCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence            999874  4899999999999999999886554310        11111   1112346789999999999999998765


Q ss_pred             c
Q 022248          283 F  283 (300)
Q Consensus       283 ~  283 (300)
                      .
T Consensus       226 ~  226 (241)
T 2ex4_A          226 E  226 (241)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.87  E-value=1.2e-20  Score=155.59  Aligned_cols=145  Identities=21%  Similarity=0.323  Sum_probs=115.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..++..     +|+|+++.+++.++++         ++.++.+|+..+++++++||+|++..++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTI  112 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEcchH
Confidence            3789999999999999988753     9999999999999876         5788999999999888899999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ++++++..+++++.++|+|||.+++......  .....+................++.+++.++|+++||+++++.....
T Consensus       113 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~  190 (219)
T 1vlm_A          113 CFVDDPERALKEAYRILKKGGYLIVGIVDRE--SFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLF  190 (219)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEEECSS--SHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             hhccCHHHHHHHHHHHcCCCcEEEEEEeCCc--cHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccC
Confidence            9999999999999999999999999886543  22222222211111111123456889999999999999999886654


Q ss_pred             C
Q 022248          285 S  285 (300)
Q Consensus       285 ~  285 (300)
                      .
T Consensus       191 ~  191 (219)
T 1vlm_A          191 K  191 (219)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.87  E-value=2.8e-21  Score=167.54  Aligned_cols=160  Identities=18%  Similarity=0.127  Sum_probs=123.5

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhH--hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      ....++.+|||||||+|.++..++  ..++.+++|+|+++.+++.|++++...++. .+++++++|+.+++++ ++||+|
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~v  191 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQDAWKLDTR-EGYDLL  191 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECCGGGCCCC-SCEEEE
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECchhcCCcc-CCeEEE
Confidence            334678899999999999999985  356789999999999999999999877764 4699999999999887 999999


Q ss_pred             EEcccccCcccHHH---HHHHHHHcccCCcEEEEEecccCCCch-------------HHHHHHHhhhhhhhhhcCCcccc
Q 022248          199 VGTLVLCSVKDVDM---TLQEVRRVLKPGGIYLFVEHVAAKDGT-------------FLKFWQNVVDPLQQIVSDGCHLT  262 (300)
Q Consensus       199 ~~~~~l~~~~~~~~---~l~~~~~~LkpgG~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  262 (300)
                      ++..+++|+++...   +++++.++|||||++++.+........             ........+..........+++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH  271 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence            99999999988765   799999999999999998865432110             00111111111111111134688


Q ss_pred             hHHHHHHHhcCCcEEEEeee
Q 022248          263 RQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +++.++|+++||+++++...
T Consensus       272 ~~~~~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          272 AQTRAQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHCCCEEEEEEcc
Confidence            99999999999999998863

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.87  E-value=6.6e-21  Score=163.49  Aligned_cols=154  Identities=16%  Similarity=0.158  Sum_probs=122.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++. + +.+++|+|+++.+++.|++++...+.   ++.++++|+.+++++ ++||+|++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~v~~~   96 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELN-DKYDIAICH   96 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCS-SCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcCcC-CCeeEEEEC
Confidence            46789999999999999999874 3 47999999999999999999876653   799999999998874 699999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEeccc-----C---CCch-----HHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA-----A---KDGT-----FLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      .+++++++...+++++.++|||||++++.++..     .   .+..     ....+...+..............+++.++
T Consensus        97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  176 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY  176 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHH
T ss_pred             ChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence            999999999999999999999999999998651     0   0010     02233333333333333445667799999


Q ss_pred             HHhcCCcEEEEee
Q 022248          269 ISEAGFSSVELGN  281 (300)
Q Consensus       269 l~~aGf~~v~~~~  281 (300)
                      |+++||+.|++..
T Consensus       177 l~~aGF~~v~~~~  189 (284)
T 3gu3_A          177 LSELGVKNIECRV  189 (284)
T ss_dssp             HHHTTCEEEEEEE
T ss_pred             HHHcCCCeEEEEE
Confidence            9999999998854

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.87  E-value=3.7e-21  Score=160.02  Aligned_cols=160  Identities=23%  Similarity=0.227  Sum_probs=124.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---CCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....++.   ..++.++.+|+..+++++++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            47889999999999999999876 679999999999999999988766542   13689999999999988999999999


Q ss_pred             cccccCcccHH---HHHHHHHHcccCCcEEEEEecccCCCchHHH-HHHHhhhhh---hh-----------hhcCCcccc
Q 022248          201 TLVLCSVKDVD---MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK-FWQNVVDPL---QQ-----------IVSDGCHLT  262 (300)
Q Consensus       201 ~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~-----------~~~~~~~~~  262 (300)
                      ..+++++++..   .+++++.++|||||++++.++.......... .....+...   ..           ......++.
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE  187 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence            99999998887   8999999999999999999876644322211 111111000   00           001135678


Q ss_pred             hHHHHHHHhcCCcEEEEeeecc
Q 022248          263 RQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      +++.++|+++||+++++.....
T Consensus       188 ~~l~~ll~~aGf~~~~~~~~~~  209 (235)
T 3sm3_A          188 KELVFLLTDCRFEIDYFRVKEL  209 (235)
T ss_dssp             HHHHHHHHTTTEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEecce
Confidence            9999999999999999875433

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.86  E-value=2.1e-21  Score=159.17  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=118.9

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      .+..++..+ .++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++.        ++.++.+|+..++ .++
T Consensus        33 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~  101 (211)
T 3e23_A           33 TLTKFLGEL-PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AID  101 (211)
T ss_dssp             HHHHHHTTS-CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCS
T ss_pred             HHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCC
Confidence            344444444 36789999999999999999875 669999999999999999886        4567889998888 789


Q ss_pred             cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      +||+|++..++++++  +...+++++.++|||||++++..........         ....  .....++.+++.++|++
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~l~~  170 (211)
T 3e23_A          102 AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR---------DKLA--RYYNYPSEEWLRARYAE  170 (211)
T ss_dssp             CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE---------CTTS--CEECCCCHHHHHHHHHH
T ss_pred             cEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc---------cccc--hhccCCCHHHHHHHHHh
Confidence            999999999999998  7789999999999999999998754432211         0000  11235678899999999


Q ss_pred             cC-CcEEEEeeecc
Q 022248          272 AG-FSSVELGNAFL  284 (300)
Q Consensus       272 aG-f~~v~~~~~~~  284 (300)
                      +| |+++++.....
T Consensus       171 aG~f~~~~~~~~~~  184 (211)
T 3e23_A          171 AGTWASVAVESSEG  184 (211)
T ss_dssp             HCCCSEEEEEEEEE
T ss_pred             CCCcEEEEEEeccC
Confidence            99 99999876544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.86  E-value=1.1e-21  Score=166.55  Aligned_cols=167  Identities=16%  Similarity=0.073  Sum_probs=116.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL---------------------------T  176 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~---------------------------~  176 (300)
                      .++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++......                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4678999999999988877665443479999999999999998765432100                           1


Q ss_pred             CEE-EEecccCcC-CC---CCCcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          177 NFK-FLQAVGEAI-PV---SDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       177 ~~~-~~~~d~~~~-~~---~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      ++. ++.+|+.+. |+   ..++||+|+++++++++    ++...++++++++|||||+|++.+...... .        
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~--------  204 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-Y--------  204 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-E--------
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-c--------
Confidence            243 888998773 43   35799999999999986    456789999999999999999987533210 0        


Q ss_pred             hhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCC--ccc-ccceeeEEecC
Q 022248          248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSN--ASL-ISPHVYGIAHK  300 (300)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~--~~~-~~~~~~~~~~k  300 (300)
                       ...........++.+++.++|+++||+++++....-..  ... ..++++.+|+|
T Consensus       205 -~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K  259 (263)
T 2a14_A          205 -MVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK  259 (263)
T ss_dssp             -EETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred             -eeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence             00001112234577899999999999999887653111  111 12456667765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.86  E-value=5.2e-21  Score=163.71  Aligned_cols=152  Identities=21%  Similarity=0.218  Sum_probs=120.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++ .+.+++|+|+|+.+++.++++.       +++.++.+|++.+++ +++||+|++..+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v~~~~~  126 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLDAVFSNAM  126 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcCEEEEcch
Confidence            4678999999999999999987 6779999999999999998874       478899999999887 589999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhh-----hhcCCcccchHHHHHHHhcCCcEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ-----IVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      +++++++..+++++.++|||||++++..+...........+...+.....     .......+.+++.++|+++||+++.
T Consensus       127 l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  206 (279)
T 3ccf_A          127 LHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTY  206 (279)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEE
T ss_pred             hhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEE
Confidence            99999999999999999999999999876543322333333322221110     0111355788999999999999988


Q ss_pred             Eeeecc
Q 022248          279 LGNAFL  284 (300)
Q Consensus       279 ~~~~~~  284 (300)
                      ++....
T Consensus       207 ~~~~~~  212 (279)
T 3ccf_A          207 AALFNR  212 (279)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            775543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.86  E-value=2.3e-21  Score=161.68  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=122.8

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      +..++.....++.+|||||||+|.++..+++ .+.+++|+|+++.+++.|++++...+.. .++.|+++|+..++ ++++
T Consensus        56 l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~  132 (235)
T 3lcc_A           56 IVHLVDTSSLPLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFTWR-PTEL  132 (235)
T ss_dssp             HHHHHHTTCSCCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCC-CSSC
T ss_pred             HHHHHHhcCCCCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhcCC-CCCC
Confidence            3444544444567999999999999999875 5779999999999999999988654332 47999999999887 4569


Q ss_pred             ccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          195 VDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       195 ~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      ||+|++..++++++  +...+++++.++|||||++++.+........               .....++.+++.++|+++
T Consensus       133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~  197 (235)
T 3lcc_A          133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG---------------GPPYKVDVSTFEEVLVPI  197 (235)
T ss_dssp             EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS---------------CSSCCCCHHHHHHHHGGG
T ss_pred             eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC---------------CCCccCCHHHHHHHHHHc
Confidence            99999999999998  8889999999999999999998865432100               011235678999999999


Q ss_pred             CCcEEEEeeeccCC
Q 022248          273 GFSSVELGNAFLSN  286 (300)
Q Consensus       273 Gf~~v~~~~~~~~~  286 (300)
                      ||++++++......
T Consensus       198 Gf~~~~~~~~~~~~  211 (235)
T 3lcc_A          198 GFKAVSVEENPHAI  211 (235)
T ss_dssp             TEEEEEEEECTTCC
T ss_pred             CCeEEEEEecCCcc
Confidence            99999988665543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.86  E-value=4.9e-21  Score=161.40  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++....+++|+|+++.+++.++++..     ..++.++.+|+..+++++++||+|++..+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  117 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAIEPDAYNVVLSSLA  117 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence            3678999999999999999987644499999999999999998764     24899999999999988899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHH-H------------HHHhhhhh-------hhhhcCCcccch
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLK-F------------WQNVVDPL-------QQIVSDGCHLTR  263 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~------------~~~~~~~~-------~~~~~~~~~~~~  263 (300)
                      ++++++...+++++.++|||||++++............. |            +..++...       ........++.+
T Consensus       118 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  197 (253)
T 3g5l_A          118 LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVT  197 (253)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHH
T ss_pred             hhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHH
Confidence            999999999999999999999999997643210000000 0            00000000       000000112778


Q ss_pred             HHHHHHHhcCCcEEEEeeecc
Q 022248          264 QTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ++.++|+++||+++++.....
T Consensus       198 ~~~~~l~~aGF~~~~~~e~~~  218 (253)
T 3g5l_A          198 TYIQTLLKNGFQINSVIEPEP  218 (253)
T ss_dssp             HHHHHHHHTTEEEEEEECCCC
T ss_pred             HHHHHHHHcCCeeeeeecCCC
Confidence            999999999999999986544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.86  E-value=3e-21  Score=161.56  Aligned_cols=142  Identities=15%  Similarity=0.180  Sum_probs=114.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++          +.++.+|+.+.  ++++++||+|++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence            46789999999999999998875 66899999999999998764          67889998775  7888999999999


Q ss_pred             ccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          202 LVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       202 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      .+++|++  +...+++++.++|||||++++..+....   ...+....    ....+...++.+++.++++++||+++++
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~l~~~l~~aGf~~~~~  181 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS---LYSLINFY----IDPTHKKPVHPETLKFILEYLGFRDVKI  181 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS---HHHHHHHT----TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch---hHHHHHHh----cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence            9999998  5589999999999999999998865432   22222211    1112334567789999999999999888


Q ss_pred             eeec
Q 022248          280 GNAF  283 (300)
Q Consensus       280 ~~~~  283 (300)
                      ....
T Consensus       182 ~~~~  185 (240)
T 3dli_A          182 EFFE  185 (240)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.86  E-value=1.4e-21  Score=165.64  Aligned_cols=149  Identities=20%  Similarity=0.254  Sum_probs=117.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++ .+.+++|+|+|+.+++.++++        .++.|+.+|++.+++++++||+|++..+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  103 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVH--------PQVEWFTGYAENLALPDKSVDGVISILA  103 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCC--------TTEEEECCCTTSCCSCTTCBSEEEEESC
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhc--------cCCEEEECchhhCCCCCCCEeEEEEcch
Confidence            4678999999999999999986 678999999999999887654        2799999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|++++..+++++.++|| ||++++.++.......  .+....+.......+..+.+.+++. +|+++||+.+++....
T Consensus       104 l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~~  179 (261)
T 3ege_A          104 IHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQR--IWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPFL  179 (261)
T ss_dssp             GGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCC--CGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEECC
T ss_pred             HhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHH--HHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEec
Confidence            9999999999999999999 9999998865432210  1111222222222233456677888 9999999998887654


Q ss_pred             cC
Q 022248          284 LS  285 (300)
Q Consensus       284 ~~  285 (300)
                      ..
T Consensus       180 ~p  181 (261)
T 3ege_A          180 LP  181 (261)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.86  E-value=8.3e-21  Score=159.95  Aligned_cols=157  Identities=17%  Similarity=0.156  Sum_probs=122.4

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      .+...++..+. .++.+|||||||+|.++..+++....+++++|+++.+++.+++++...    .++.++.+|+..++++
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~  155 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLP  155 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCC
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCC
Confidence            33445555554 467899999999999999998754568999999999999999886443    3799999999999988


Q ss_pred             CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          192 DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      +++||+|++..+++|++  +...+++++.++|||||++++.++........       .   ........++.+++.++|
T Consensus       156 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-------V---DKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-------E---ETTTTEEEBCHHHHHHHH
T ss_pred             CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce-------e---cccCCcccCCHHHHHHHH
Confidence            89999999999999994  57889999999999999999998643322110       0   001111245678999999


Q ss_pred             HhcCCcEEEEeeec
Q 022248          270 SEAGFSSVELGNAF  283 (300)
Q Consensus       270 ~~aGf~~v~~~~~~  283 (300)
                      +++||+++++....
T Consensus       226 ~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          226 NESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHTCCEEEEEECT
T ss_pred             HHCCCEEEEeeecC
Confidence            99999999887653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.85  E-value=1.9e-20  Score=156.78  Aligned_cols=180  Identities=12%  Similarity=0.128  Sum_probs=129.1

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ..+..++.....++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....+.   ++.++.+|+..++++ 
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~-   99 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNIN-   99 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCCS-
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCCcc-
Confidence            3444444443346789999999999999999875 66999999999999999999877654   689999999998876 


Q ss_pred             CcccEEEEcc-cccCc---ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh------------hh-------
Q 022248          193 ASVDAVVGTL-VLCSV---KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV------------VD-------  249 (300)
Q Consensus       193 ~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~------------~~-------  249 (300)
                      ++||+|++.. +++|+   .+...+++++.++|||||++++.......   ....+...            +.       
T Consensus       100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (246)
T 1y8c_A          100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYK---LSQVLGNNDFNYDDDEVFYYWENQFEDDL  176 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH---HHTTTTTCCEEEEETTEEEEEEEEEETTE
T ss_pred             CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHH---HHhhcCcceEEecCCcEEEEEecccCCce
Confidence            8899999998 99999   56788999999999999999986543210   00000000            00       


Q ss_pred             ----------------hhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCccc-ccceeeEEecC
Q 022248          250 ----------------PLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASL-ISPHVYGIAHK  300 (300)
Q Consensus       250 ----------------~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~-~~~~~~~~~~k  300 (300)
                                      ......+...++.+++.++|+++||+++++...+...+.. ..+.++.+++|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          177 VSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             EEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence                            0000001234578999999999999999987543332221 33556666665

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.85  E-value=2.8e-20  Score=157.50  Aligned_cols=152  Identities=24%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.+++++ ...  .+++.++.+|++.+++++++||+|++..+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGV--DRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTS--CTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hcc--CCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            46789999999999999999875 679999999999999999887 222  25899999999999988899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCch---HHHHHHHhhhhhhhhh--cCCcccchHHHHHHHhcCCcEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT---FLKFWQNVVDPLQQIV--SDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++++++...+++++.++|||||++++. +.......   +...+...........  ....++.+++.++|+++||+++.
T Consensus       114 l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  192 (263)
T 2yqz_A          114 WHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRT  192 (263)
T ss_dssp             GGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcce
Confidence            999999999999999999999999998 32221112   2222332222111000  11245678999999999999776


Q ss_pred             Ee
Q 022248          279 LG  280 (300)
Q Consensus       279 ~~  280 (300)
                      +.
T Consensus       193 ~~  194 (263)
T 2yqz_A          193 RE  194 (263)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.85  E-value=2.2e-21  Score=164.58  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             HHHHHHHhhhhHhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC
Q 022248           94 EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL  173 (300)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~  173 (300)
                      ++|...+......|..........+. ...+++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++.     
T Consensus        20 ~~yd~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-----   92 (263)
T 3pfg_A           20 ELYDLVHQGKGKDYHREAADLAALVR-RHSPKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN-----   92 (263)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH-HHCTTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC-----
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH-hhCCCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC-----
Confidence            34444433222344443333333333 33346789999999999999999865 569999999999999999874     


Q ss_pred             CCCCEEEEecccCcCCCCCCcccEEEEcc-cccCcc---cHHHHHHHHHHcccCCcEEEEEec
Q 022248          174 PLTNFKFLQAVGEAIPVSDASVDAVVGTL-VLCSVK---DVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       174 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                        .++.++++|+..+++ +++||+|++.. +++|++   +...+++++.++|||||++++..+
T Consensus        93 --~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A           93 --PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             --TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             --CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence              378999999999887 68999999998 999995   556789999999999999999653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.85  E-value=4.2e-20  Score=160.97  Aligned_cols=166  Identities=15%  Similarity=0.152  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      .....+++.+. .++.+|||||||+|.++..+++..+.+++|+|+|+.+++.|++++...++. +++.++.+|+.+++  
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--  153 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDFA--  153 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGCC--
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChHHCC--
Confidence            44455555554 567899999999999999998754679999999999999999999887764 57999999998875  


Q ss_pred             CCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHH------HHH-HHhhhhhhh--hhcCCcc
Q 022248          192 DASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL------KFW-QNVVDPLQQ--IVSDGCH  260 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~-~~~~~~~~~--~~~~~~~  260 (300)
                       ++||+|++..+++|+  ++...+++++.++|||||++++.++.........      .+. ......+..  .......
T Consensus       154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP  232 (318)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence             789999999999999  6889999999999999999999987654421110      000 000011111  1123456


Q ss_pred             cchHHHHHHHhcCCcEEEEeee
Q 022248          261 LTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       261 ~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +.+++.++++++||++++++..
T Consensus       233 s~~~~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          233 STEMMVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             CHHHHHHHHHHTTCBCCCCEEC
T ss_pred             CHHHHHHHHHhCCCEEEEEEec
Confidence            7899999999999998887654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.84  E-value=6.6e-20  Score=156.36  Aligned_cols=171  Identities=12%  Similarity=0.042  Sum_probs=127.4

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHH------HHHHHHHHHHHcCCCCCCEEEEecc
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRK------MEKYAQTAAVAAGLPLTNFKFLQAV  184 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~------~~~~a~~~~~~~~~~~~~~~~~~~d  184 (300)
                      ....+++.+. .++.+|||||||+|.++..+++.  +..+++|+|+|+.      +++.|++++...++. ++++++.+|
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~~~d  109 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEEECSC
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEEEECC
Confidence            3444555443 57789999999999999999874  3379999999997      999999999877763 589999998


Q ss_pred             ---cCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHh----hhhhh---
Q 022248          185 ---GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNV----VDPLQ---  252 (300)
Q Consensus       185 ---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~----~~~~~---  252 (300)
                         ...+++++++||+|++..+++|+++...+++.+.++++|||++++.+.......  .....+...    +....   
T Consensus       110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (275)
T 3bkx_A          110 NLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD  189 (275)
T ss_dssp             CTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred             hhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence               456677889999999999999999998877777888888999999987654321  111111111    11110   


Q ss_pred             hhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          253 QIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      .......++.+++.++++++||++++++..+..
T Consensus       190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~~~  222 (275)
T 3bkx_A          190 VANIRTLITPDTLAQIAHDNTWTYTAGTIVEDP  222 (275)
T ss_dssp             TCSCCCCCCHHHHHHHHHHHTCEEEECCCBCCT
T ss_pred             cccccccCCHHHHHHHHHHCCCeeEEEEEecCC
Confidence            111123567889999999999999988876443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.84  E-value=3e-20  Score=160.12  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=120.2

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVV  199 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~  199 (300)
                      ....++.+|||||||+|.++..+++....+++|+|+++.+++.|++++...++. .++.++++|+..+++ ++++||+|+
T Consensus        60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           60 LYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             HHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCccccccCCCCCcCEEE
Confidence            334678899999999999999988765569999999999999999998877653 479999999999887 678999999


Q ss_pred             EcccccC----cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-h---------------hhh-hhh-----
Q 022248          200 GTLVLCS----VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-V---------------VDP-LQQ-----  253 (300)
Q Consensus       200 ~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~---------------~~~-~~~-----  253 (300)
                      +..++++    ..+...+++++.++|||||++++..+....   ....+.. .               +.. ...     
T Consensus       139 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (298)
T 1ri5_A          139 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV---ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT  215 (298)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH---HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred             ECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH---HHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence            9999976    467788999999999999999998854321   1111110 0               000 000     


Q ss_pred             ------hhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          254 ------IVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       254 ------~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                            .....+++.+++.++|+++||+++++...
T Consensus       216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             EchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence                  00012456789999999999999988643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.84  E-value=1e-19  Score=147.42  Aligned_cols=140  Identities=21%  Similarity=0.234  Sum_probs=115.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++.  ++.++.+|+..+++ +++||+|++..++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~-~~~~D~v~~~~~l  107 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD--NLHTRVVDLNNLTF-DRQYDFILSTVVL  107 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC--CcEEEEcchhhCCC-CCCceEEEEcchh
Confidence            5679999999999999999876 679999999999999999998887763  79999999999887 7899999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++  +...+++++.++|||||++++.+........            ........++.+++.++|++  |++++.+..
T Consensus       108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP------------CTVGFPFAFKEGELRRYYEG--WERVKYNED  173 (199)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC------------CCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC------------CCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence            9987  7889999999999999999887754433210            00111235577899999976  999888654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.84  E-value=3.8e-19  Score=158.07  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      .+++.+. .+..+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++. ++++|+.+|+. .+++. .
T Consensus       193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~~~d~~-~~~p~-~  268 (369)
T 3gwz_A          193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEILPGDFF-ETIPD-G  268 (369)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTT-TCCCS-S
T ss_pred             HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEeccCCC-CCCCC-C
Confidence            3444433 4568999999999999999987 46779999999 99999999999888765 68999999997 45554 8


Q ss_pred             ccEEEEcccccCcccHH--HHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          195 VDAVVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      ||+|++.++++++++..  .++++++++|+|||++++.+............+...  .+........++.++|.++|+++
T Consensus       269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~--~~~~~~~g~~~t~~e~~~ll~~a  346 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDL--LLLVLVGGAERSESEFAALLEKS  346 (369)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHH--HHHHHHSCCCBCHHHHHHHHHTT
T ss_pred             ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhH--HHHhhcCCccCCHHHHHHHHHHC
Confidence            99999999999998775  799999999999999999987665543222111111  11112345567889999999999


Q ss_pred             CCcEEEEee
Q 022248          273 GFSSVELGN  281 (300)
Q Consensus       273 Gf~~v~~~~  281 (300)
                      ||+++++..
T Consensus       347 Gf~~~~~~~  355 (369)
T 3gwz_A          347 GLRVERSLP  355 (369)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.84  E-value=6e-21  Score=155.68  Aligned_cols=146  Identities=10%  Similarity=0.042  Sum_probs=110.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC----------CCCCCEEEEecccCcCCCCC-
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEAIPVSD-  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~----------~~~~~~~~~~~d~~~~~~~~-  192 (300)
                      .++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++.....          ....+++|+++|+.++++.+ 
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            46789999999999999999875 6699999999999999998764210          00147999999999998765 


Q ss_pred             CcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          193 ASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ++||+|++..++++++.  ...++++++++|||||+++++.......            ....  .....+.+++.+++.
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~------------~~~~--~~~~~~~~el~~~~~  165 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA------------LLEG--PPFSVPQTWLHRVMS  165 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS------------SSSS--CCCCCCHHHHHHTSC
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc------------ccCC--CCCCCCHHHHHHHhc
Confidence            78999999999998864  4568999999999999955554322211            0000  011246789999998


Q ss_pred             hcCCcEEEEeeeccC
Q 022248          271 EAGFSSVELGNAFLS  285 (300)
Q Consensus       271 ~aGf~~v~~~~~~~~  285 (300)
                      + ||+++.++.....
T Consensus       166 ~-gf~i~~~~~~~~~  179 (203)
T 1pjz_A          166 G-NWEVTKVGGQDTL  179 (203)
T ss_dssp             S-SEEEEEEEESSCT
T ss_pred             C-CcEEEEeccccch
Confidence            8 9998888765543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.84  E-value=2.7e-20  Score=157.72  Aligned_cols=167  Identities=15%  Similarity=0.110  Sum_probs=120.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL---------------------------T  176 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~---------------------------~  176 (300)
                      .++.+|||||||+|.++..++.....+++|+|+|+.+++.+++++...+...                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4568999999999999988876433489999999999999998875432100                           0


Q ss_pred             CE-EEEecccCcCC-CCC---CcccEEEEccccc----CcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          177 NF-KFLQAVGEAIP-VSD---ASVDAVVGTLVLC----SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       177 ~~-~~~~~d~~~~~-~~~---~~~D~v~~~~~l~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      ++ .++.+|+...+ +++   ++||+|++..+++    ++++...+++++.++|||||+|++.+.....          .
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~----------~  204 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS----------Y  204 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC----------E
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc----------e
Confidence            27 89999998764 355   8999999999999    6678889999999999999999998843321          0


Q ss_pred             hhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCC--cc-cccceeeEEecC
Q 022248          248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSN--AS-LISPHVYGIAHK  300 (300)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~--~~-~~~~~~~~~~~k  300 (300)
                      +............+.+++.++|+++||+++++.......  .+ -....++.+++|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K  260 (265)
T 2i62_A          205 YMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK  260 (265)
T ss_dssp             EEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred             EEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence            000011112234567799999999999999888654321  11 123456666666

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.84  E-value=5e-20  Score=150.94  Aligned_cols=144  Identities=25%  Similarity=0.347  Sum_probs=112.6

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...++..+..++.+|||+|||+|.++..+    +. +++|+|+++.+++.++++.       .++.++.+|+..++++++
T Consensus        26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~   94 (211)
T 2gs9_A           26 EERALKGLLPPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGE   94 (211)
T ss_dssp             HHHHHHTTCCCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSS
T ss_pred             HHHHHHHhcCCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCC
Confidence            33445555557889999999999998877    44 8999999999999999875       378999999999999889


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh-hhhhhhcCCcccchHHHHHHHhc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD-PLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      +||+|++..+++|+++...+++++.++|||||.+++.++....  .+......... ......+...++.+++.++|+  
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--  170 (211)
T 2gs9_A           95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS--PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--  170 (211)
T ss_dssp             CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS--HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--
T ss_pred             cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC--cHHHHHHHHhhccCccccccccCCHHHHHHHhc--
Confidence            9999999999999999999999999999999999999865532  22222211111 111112345678999999998  


Q ss_pred             C
Q 022248          273 G  273 (300)
Q Consensus       273 G  273 (300)
                      |
T Consensus       171 G  171 (211)
T 2gs9_A          171 P  171 (211)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=7.2e-20  Score=154.65  Aligned_cols=152  Identities=14%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      .++..+. .++.+|||||||+|.++..+++. ++.+++|+|+++.+++.++++.       +++.++.+|++.++ ++++
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-~~~~   95 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK-PAQK   95 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC-CSSC
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC-ccCC
Confidence            3444443 46789999999999999999874 4679999999999999998872       47899999999988 7889


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh--hhh------hhcCCcccchHHH
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP--LQQ------IVSDGCHLTRQTG  266 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~  266 (300)
                      ||+|++..+++++++...+++++.++|||||++++..+..... .....+......  ...      .......+.+++.
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYF  174 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHH
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHH
Confidence            9999999999999999999999999999999999988644322 122222222111  100      1123456788999


Q ss_pred             HHHHhcCCcEE
Q 022248          267 NNISEAGFSSV  277 (300)
Q Consensus       267 ~~l~~aGf~~v  277 (300)
                      ++|+++||++.
T Consensus       175 ~~l~~aGf~v~  185 (259)
T 2p35_A          175 NALSPKSSRVD  185 (259)
T ss_dssp             HHHGGGEEEEE
T ss_pred             HHHHhcCCceE
Confidence            99999999743

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.83  E-value=1e-19  Score=149.77  Aligned_cols=151  Identities=16%  Similarity=0.102  Sum_probs=112.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC---CCCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++. +..+++|+|+++.+++.|++++...++.   ..++.++.+|+...+.++++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            36789999999999999999875 3469999999999999999998766653   1279999999988777778999999


Q ss_pred             EcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh-hhhhhhhcCCcccchHHH----HHHHhc
Q 022248          200 GTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV-DPLQQIVSDGCHLTRQTG----NNISEA  272 (300)
Q Consensus       200 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~l~~a  272 (300)
                      +..+++++++.  ..+++++.++|||||++++.....     ....+.... .......+...++.+++.    ++++++
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  182 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE-----YNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERF  182 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH-----HHHHTC-----------CCSCBCHHHHHHHHHHHHHHS
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc-----cchhhcccccccccccccccccCHHHHHHHHHHHHHHc
Confidence            99999999865  789999999999999777665311     111110000 001111122345777888    899999


Q ss_pred             CCcEEEE
Q 022248          273 GFSSVEL  279 (300)
Q Consensus       273 Gf~~v~~  279 (300)
                      ||+++..
T Consensus       183 Gf~v~~~  189 (217)
T 3jwh_A          183 AYNVQFQ  189 (217)
T ss_dssp             SEEEEEC
T ss_pred             CceEEEE
Confidence            9986554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.83  E-value=1.2e-19  Score=146.38  Aligned_cols=152  Identities=16%  Similarity=0.189  Sum_probs=121.1

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccE
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      ++..+..++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.       .++.++.+|+..++++++.||+
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D~  110 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFDL  110 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEEE
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCceeE
Confidence            44444567889999999999999999875 679999999999999999874       3689999999998888889999


Q ss_pred             EEEc-ccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          198 VVGT-LVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       198 v~~~-~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      |++. .+++++  ++...+++++.++|+|||.+++......                       .++.+++.++++++||
T Consensus       111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------------~~~~~~~~~~l~~~Gf  167 (195)
T 3cgg_A          111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-----------------------GWVFGDFLEVAERVGL  167 (195)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-----------------------SCCHHHHHHHHHHHTE
T ss_pred             EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------------CcCHHHHHHHHHHcCC
Confidence            9998 678877  4457899999999999999999764321                       1345689999999999


Q ss_pred             cEEEEeeeccCCccc-ccceeeEEecC
Q 022248          275 SSVELGNAFLSNASL-ISPHVYGIAHK  300 (300)
Q Consensus       275 ~~v~~~~~~~~~~~~-~~~~~~~~~~k  300 (300)
                      +++++....-...+. ..+++..+++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~k  194 (195)
T 3cgg_A          168 ELENAFESWDLKPFVQGSEFLVAVFTK  194 (195)
T ss_dssp             EEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred             EEeeeecccccCcCCCCCcEEEEEEec
Confidence            998887553333322 45666666655

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.83  E-value=9e-20  Score=156.78  Aligned_cols=150  Identities=13%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc-----------------CCC-----------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-----------------GLP-----------L  175 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~-----------------~~~-----------~  175 (300)
                      .++.+|||||||+|.+...++...+.+|+|+|+|+.|++.|+++++..                 +..           .
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            367899999999999654444445679999999999999998865321                 100           0


Q ss_pred             CCEEEEecccCc-CCC-----CCCcccEEEEcccccC----cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH
Q 022248          176 TNFKFLQAVGEA-IPV-----SDASVDAVVGTLVLCS----VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ  245 (300)
Q Consensus       176 ~~~~~~~~d~~~-~~~-----~~~~~D~v~~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  245 (300)
                      ..+.++.+|+.. +|+     ++++||+|++.+++++    ++++..+++++.++|||||+|++........        
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~--------  221 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW--------  221 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------
Confidence            015677788877 553     3467999999999999    6788999999999999999999986332110        


Q ss_pred             HhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          246 NVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                        +...........++.+++.++|+++||+++++....
T Consensus       222 --~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          222 --YLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             --EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --EEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence              000001111235678899999999999999888665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=5.3e-21  Score=161.19  Aligned_cols=104  Identities=24%  Similarity=0.282  Sum_probs=91.8

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+.+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|++.        +++.+++++++++++++++||+|++..
T Consensus        37 ~~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~~~~sfD~v~~~~  107 (257)
T 4hg2_A           37 APARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGLPPASVDVAIAAQ  107 (257)
T ss_dssp             SSCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCCCSSCEEEEEECS
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcccCCcccEEEEee
Confidence            345679999999999999999864 56999999999999887642        589999999999999999999999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      ++|++ +...++++++|+|||||+|++..+....
T Consensus       108 ~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~  140 (257)
T 4hg2_A          108 AMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR  140 (257)
T ss_dssp             CCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred             ehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            99887 6788999999999999999998865543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.83  E-value=1.3e-20  Score=162.86  Aligned_cols=168  Identities=14%  Similarity=0.066  Sum_probs=119.9

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+..++.+|||||||+|.++..+++. +.+++|+|+++.+++.|++++...++. ..+++++++|+..+++ ++
T Consensus        72 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  149 (299)
T 3g2m_A           72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DK  149 (299)
T ss_dssp             HHHHHHHHCCCCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SC
T ss_pred             HHHHHHhhCCCCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CC
Confidence            34444555555669999999999999999875 679999999999999999998765420 0379999999999987 68


Q ss_pred             cccEEEEc-ccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCC-----chHHHHH---HHhhhhhh----------
Q 022248          194 SVDAVVGT-LVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKD-----GTFLKFW---QNVVDPLQ----------  252 (300)
Q Consensus       194 ~~D~v~~~-~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~---~~~~~~~~----------  252 (300)
                      +||+|++. .++++++  +...+++++.++|||||+|++..+.....     .....+.   ...+....          
T Consensus       150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (299)
T 3g2m_A          150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQE  229 (299)
T ss_dssp             CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEE
T ss_pred             CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEE
Confidence            99999975 5566665  35789999999999999999987654311     0000000   00000000          


Q ss_pred             ---------------hhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          253 ---------------QIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       253 ---------------~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                                     ......+++.+++.++|+++||+++++.....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~  276 (299)
T 3g2m_A          230 ITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS  276 (299)
T ss_dssp             EEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             EEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence                           00011245889999999999999999986653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.83  E-value=8e-20  Score=151.02  Aligned_cols=149  Identities=21%  Similarity=0.234  Sum_probs=111.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCC-CcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSD-ASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++        .++.+..+++..+   ++.. ++||+|+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~fD~v~  121 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAEAKVPVGKDYDLIC  121 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHTTCSCCCCCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcccccccCCCccEEE
Confidence            46689999999999999999875 67999999999999999887        2567888888766   5444 4599999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchH--HHHHH-Hhhhhhh---hhhcCCcccchHHHHHHHhcC
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF--LKFWQ-NVVDPLQ---QIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      +..+++ ..+...+++++.++|||||++++.++........  ...+. ..+....   .......++.+++.++|+++|
T Consensus       122 ~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          122 ANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             EESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             ECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence            999999 7899999999999999999999998755332110  00000 0000000   001112457899999999999


Q ss_pred             CcEEEEeee
Q 022248          274 FSSVELGNA  282 (300)
Q Consensus       274 f~~v~~~~~  282 (300)
                      |+++++...
T Consensus       201 f~~~~~~~~  209 (227)
T 3e8s_A          201 LRLVSLQEP  209 (227)
T ss_dssp             EEEEEEECC
T ss_pred             CeEEEEecC
Confidence            999998763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.83  E-value=1.2e-19  Score=149.52  Aligned_cols=152  Identities=16%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCC---CCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPL---TNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++.. ..+++|+|+++.+++.|++++...++..   .+++++.+|+...++.+++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            367899999999999999998743 3799999999999999999987665431   279999999988887788999999


Q ss_pred             EcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHH----HHHHhcC
Q 022248          200 GTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTG----NNISEAG  273 (300)
Q Consensus       200 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aG  273 (300)
                      +..+++++++.  ..+++++.++|||||.+++....... ..+.....   .......+...++.+++.    ++++++|
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~~G  183 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYN-FHYGNLFE---GNLRHRDHRFEWTRKEFQTWAVKVAEKYG  183 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGG-GCCCCT--------GGGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhh-hhhcccCc---ccccccCceeeecHHHHHHHHHHHHHHCC
Confidence            99999999865  68999999999999966665532211 00000000   001111122345777888    8899999


Q ss_pred             CcEEEE
Q 022248          274 FSSVEL  279 (300)
Q Consensus       274 f~~v~~  279 (300)
                      |++...
T Consensus       184 f~v~~~  189 (219)
T 3jwg_A          184 YSVRFL  189 (219)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            975444

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.83  E-value=3.8e-20  Score=159.35  Aligned_cols=108  Identities=20%  Similarity=0.321  Sum_probs=93.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--CCCEEEEecccCcCC---CCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP--LTNFKFLQAVGEAIP---VSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~D~v~  199 (300)
                      ++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++....+..  ..++.+..+|+..++   +++++||+|+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            6789999999999999999875 569999999999999999886543321  246889999998887   7889999999


Q ss_pred             Ec-ccccCccc-------HHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GT-LVLCSVKD-------VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +. .+++|+++       ...+++++.++|||||++++..++
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            98 89999999       889999999999999999998753

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.83  E-value=8.3e-20  Score=151.23  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=119.5

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc--CCCCCCcc
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSDASV  195 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~  195 (300)
                      +++.+..++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++.         ..++.+|+..  .++++++|
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCE
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCcc
Confidence            33444357789999999999999999876 689999999999999988652         3678889876  56778899


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh----hhhhcCCcccchHHHHHHHh
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL----QQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~  271 (300)
                      |+|++..+++|++++..+++++.++|+|||++++..+...............+...    ....+...++.+++.++|++
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  174 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLK  174 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHH
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHH
Confidence            99999999999999999999999999999999998865432211111111000000    00112245678999999999


Q ss_pred             cCCcEEEEeeeccC
Q 022248          272 AGFSSVELGNAFLS  285 (300)
Q Consensus       272 aGf~~v~~~~~~~~  285 (300)
                      +||+++++......
T Consensus       175 ~Gf~~~~~~~~~~~  188 (230)
T 3cc8_A          175 AGYSISKVDRVYVD  188 (230)
T ss_dssp             TTEEEEEEEEEECC
T ss_pred             cCCeEEEEEecccC
Confidence            99999998876554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.83  E-value=1.9e-20  Score=156.29  Aligned_cols=102  Identities=18%  Similarity=0.282  Sum_probs=87.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-  202 (300)
                      .++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++.       +++.++.+|+..+++ +++||+|+|.. 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~~~~  109 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVSMFS  109 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEECTT
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEEcCc
Confidence            577899999999999999998753 39999999999999998874       478999999998887 68899999654 


Q ss_pred             cccCcc---cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          203 VLCSVK---DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       203 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +++|+.   +...+++++.++|||||++++.++..
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            888884   55789999999999999999976544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.4e-19  Score=156.27  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=113.9

Q ss_pred             cCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCCCCC------C
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSD------A  193 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~~~~------~  193 (300)
                      ..++.+|||||||+|.++..+++  ..+.+++|+|+|+.+++.|++++... +. ..+++|+++|++++++.+      +
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-YKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-CTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-CCceEEEEcCHHhCCccccccccCC
Confidence            35788999999999999999996  46889999999999999999998876 22 258999999999988777      8


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc---CCCchHHHHHHHhhhhhhhhhcCCc---ccchHHHH
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA---AKDGTFLKFWQNVVDPLQQIVSDGC---HLTRQTGN  267 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  267 (300)
                      +||+|++..+++++ ++..+++++.++|||||+|++.+...   .........+........  ....+   ...+.+.+
T Consensus       113 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~p~~~~~~~  189 (299)
T 3g5t_A          113 KIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQ--GLGPYWEQPGRSRLRN  189 (299)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTT--TTGGGSCTTHHHHHHT
T ss_pred             CeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcc--cccchhhchhhHHHHH
Confidence            99999999999999 99999999999999999999954332   222222233332221100  01112   23456788


Q ss_pred             HHHhcCCc
Q 022248          268 NISEAGFS  275 (300)
Q Consensus       268 ~l~~aGf~  275 (300)
                      .++++||.
T Consensus       190 ~l~~~gfp  197 (299)
T 3g5t_A          190 MLKDSHLD  197 (299)
T ss_dssp             TTTTCCCC
T ss_pred             hhhccCCC
Confidence            89999993

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.82  E-value=3.9e-19  Score=155.82  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=119.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      +..+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++. ++++|..+|+. .+++. .||+|++.++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            457999999999999999987 46779999999 99999999999888775 68999999997 45554 8999999999


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      +|++++.  ..++++++++|+|||++++.+........ ..+....   +........++.++|.++|+++||+.+++..
T Consensus       245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~d~~---~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHA-GTGMDLR---MLTYFGGKERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---C-CHHHHHH---HHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCc-cHHHHHH---HHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            9999885  78999999999999999999876544310 0111110   1112344567889999999999999998875


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       321 ~  321 (332)
T 3i53_A          321 I  321 (332)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.82  E-value=1.4e-20  Score=157.13  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             HHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCccc
Q 022248          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVD  196 (300)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D  196 (300)
                      .+.+..++.+|||||||+|..+..+++....+++|||+++.+++.|+++.+..+   .++.++.+|++.+  ++++++||
T Consensus        54 a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~FD  130 (236)
T 3orh_A           54 AAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFD  130 (236)
T ss_dssp             HHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEE
T ss_pred             HHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccccccCCc
Confidence            333446789999999999999999987666789999999999999999887765   3788899988654  57789999


Q ss_pred             EEEE-----cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          197 AVVG-----TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       197 ~v~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      .|++     ...++++.+...++++++|+|||||+|++.+....     .......+....      ....+.+...|.+
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~L~e  199 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-----GELMKSKYSDIT------IMFEETQVPALLE  199 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-----HHHTTTTCSCHH------HHHHHHTHHHHHH
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCc-----hhhhhhhhhhhh------hhhHHHHHHHHHH
Confidence            9985     45667778899999999999999999998642210     000000000000      0113466678889


Q ss_pred             cCCcEEEEee
Q 022248          272 AGFSSVELGN  281 (300)
Q Consensus       272 aGf~~v~~~~  281 (300)
                      +||+.+.++.
T Consensus       200 aGF~~~~i~~  209 (236)
T 3orh_A          200 AGFRRENIRT  209 (236)
T ss_dssp             HTCCGGGEEE
T ss_pred             cCCeEEEEEE
Confidence            9999655543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.82  E-value=1.8e-19  Score=159.80  Aligned_cols=157  Identities=15%  Similarity=0.072  Sum_probs=121.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~  200 (300)
                      ....+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++...++. ++++|+.+|+.+.  |++ ++||+|++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccccccCCCCC-CCcCEEEE
Confidence            3668999999999999999987 46789999999 99999999998877664 5899999999875  465 78999999


Q ss_pred             cccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHH--H--HhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          201 TLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW--Q--NVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       201 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      ..++|++++.  ..++++++++|||||++++.+.............  .  .....+........++.++|.++|+++||
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf  334 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL  334 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence            9999998765  4789999999999999999997665543222111  0  00000111112345688999999999999


Q ss_pred             cEEEEeeec
Q 022248          275 SSVELGNAF  283 (300)
Q Consensus       275 ~~v~~~~~~  283 (300)
                      +++++....
T Consensus       335 ~~v~~~~~~  343 (363)
T 3dp7_A          335 EVEEIQDNI  343 (363)
T ss_dssp             EESCCCCCB
T ss_pred             eEEEEEeCC
Confidence            998887543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.82  E-value=2.7e-20  Score=155.68  Aligned_cols=154  Identities=21%  Similarity=0.246  Sum_probs=115.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++....+++|+|+++.+++.++++...     .++.++.+|+..+++++++||+|++..+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceEEEEecc
Confidence            36789999999999999999876333999999999999999876532     3689999999998888899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHH-HHH-----------HHhhh-------hhhhhhcCCcccchH
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL-KFW-----------QNVVD-------PLQQIVSDGCHLTRQ  264 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~-----------~~~~~-------~~~~~~~~~~~~~~~  264 (300)
                      ++++++...+++++.++|||||++++............ .|.           ..++.       ..........++.++
T Consensus       117 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  196 (243)
T 3bkw_A          117 LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGT  196 (243)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHH
T ss_pred             ccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHH
Confidence            99999999999999999999999999875321000000 000           00000       000000111246789


Q ss_pred             HHHHHHhcCCcEEEEeee
Q 022248          265 TGNNISEAGFSSVELGNA  282 (300)
Q Consensus       265 ~~~~l~~aGf~~v~~~~~  282 (300)
                      +.++|+++||+++++...
T Consensus       197 ~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          197 TLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             HHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHcCCEeeeeccC
Confidence            999999999999998764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.82  E-value=7.7e-19  Score=155.57  Aligned_cols=162  Identities=14%  Similarity=0.164  Sum_probs=123.1

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      .+++.+. .++.+|||||||+|.++..+++ .++.+++++|+ +.+++.|+++++..++. .+++++.+|+.+.++++. 
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~-  257 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYPEA-  257 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEEEEECCTTTSCCCCC-
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEEEEeCccccCCCCCC-
Confidence            3444443 4678999999999999999987 45779999999 99999999999887764 469999999988876644 


Q ss_pred             ccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCC--chHHHHHHHhhhhhh-hhhcCCcccchHHHHHH
Q 022248          195 VDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKD--GTFLKFWQNVVDPLQ-QIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  269 (300)
                       |+|++..+++++++  ...++++++++|||||++++.+......  .....++ ..+.... ......+++.++|.++|
T Consensus       258 -D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~t~~e~~~ll  335 (359)
T 1x19_A          258 -DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAGMPFSVLGFKEQARYKEIL  335 (359)
T ss_dssp             -SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGGSSCCCCCCCCGGGHHHHH
T ss_pred             -CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcCCCCcccCCCCHHHHHHHH
Confidence             99999999999987  6789999999999999999988655332  1122222 1111110 00011237889999999


Q ss_pred             HhcCCcEEEEeeec
Q 022248          270 SEAGFSSVELGNAF  283 (300)
Q Consensus       270 ~~aGf~~v~~~~~~  283 (300)
                      +++||+.+++....
T Consensus       336 ~~aGf~~v~~~~~~  349 (359)
T 1x19_A          336 ESLGYKDVTMVRKY  349 (359)
T ss_dssp             HHHTCEEEEEEEET
T ss_pred             HHCCCceEEEEecC
Confidence            99999999887653

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.82  E-value=3.9e-19  Score=155.89  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=121.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++. ++.+++++|++ .+++.|++++...++. ++++++.+|+.+.+++++ ||+|++.+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~-~D~v~~~~  240 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTIAGSAFEVDYGND-YDLVLLPN  240 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEEecccccCCCCCC-CcEEEEcc
Confidence            46689999999999999999874 56799999999 9999999998887764 479999999988776644 99999999


Q ss_pred             cccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          203 VLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       203 ~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      +++++++  ...+++++.++|+|||++++.+.......  .....+.... ..........++.++|.++|+++||+.++
T Consensus       241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~ll~~aGf~~~~  319 (335)
T 2r3s_A          241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLV-MLATTPNGDAYTFAEYESMFSNAGFSHSQ  319 (335)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHH-HHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHH-HHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence            9999954  46899999999999999999987654321  1111111110 00111134567889999999999999998


Q ss_pred             Eeeec
Q 022248          279 LGNAF  283 (300)
Q Consensus       279 ~~~~~  283 (300)
                      +....
T Consensus       320 ~~~~~  324 (335)
T 2r3s_A          320 LHSLP  324 (335)
T ss_dssp             EECCT
T ss_pred             EEECC
Confidence            87543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.82  E-value=1.3e-19  Score=152.28  Aligned_cols=145  Identities=13%  Similarity=0.040  Sum_probs=110.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH----------cCC-----CCCCEEEEecccCcC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA----------AGL-----PLTNFKFLQAVGEAI  188 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~----------~~~-----~~~~~~~~~~d~~~~  188 (300)
                      .++.+|||+|||+|..+..|++. +.+|+|||+|+.+++.|+++...          .+.     ...+++|+++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            36789999999999999999875 66999999999999999876531          000     114799999999999


Q ss_pred             CCCC-CcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHH
Q 022248          189 PVSD-ASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQT  265 (300)
Q Consensus       189 ~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (300)
                      ++.+ ++||+|++..++++++  +...+++++.++|||||+++++........            ...  .....+.+++
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~------------~~g--~~~~~~~~el  211 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK------------HAG--PPFYVPSAEL  211 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS------------CCC--SSCCCCHHHH
T ss_pred             CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc------------CCC--CCCCCCHHHH
Confidence            8764 8999999999998885  456789999999999999987654322110            000  0112567899


Q ss_pred             HHHHHhcCCcEEEEeeecc
Q 022248          266 GNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       266 ~~~l~~aGf~~v~~~~~~~  284 (300)
                      .++|.. +|+++.++....
T Consensus       212 ~~~l~~-~f~v~~~~~~~~  229 (252)
T 2gb4_A          212 KRLFGT-KCSMQCLEEVDA  229 (252)
T ss_dssp             HHHHTT-TEEEEEEEEEEC
T ss_pred             HHHhhC-CeEEEEEecccc
Confidence            999977 599888875443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.82  E-value=4.9e-19  Score=148.97  Aligned_cols=203  Identities=19%  Similarity=0.253  Sum_probs=132.5

Q ss_pred             CCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHH
Q 022248           87 PRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ  165 (300)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~  165 (300)
                      ...++|+..|...    ...+.. ...++..++.... .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+
T Consensus         7 ~~a~~yd~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~   80 (252)
T 1wzn_A            7 LLAEYYDTIYRRR----IERVKA-EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVAR   80 (252)
T ss_dssp             TTGGGHHHHTHHH----HHTHHH-HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhcc----hhhhHH-HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHH
Confidence            4456666655432    122222 2234455555443 46789999999999999999875 679999999999999999


Q ss_pred             HHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-cccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchH--
Q 022248          166 TAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-VLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF--  240 (300)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--  240 (300)
                      ++....+.   ++.++++|+..++++ ++||+|++.. .++++  .+...+++++.++|||||.+++..++.......  
T Consensus        81 ~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~  156 (252)
T 1wzn_A           81 RKAKERNL---KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGP  156 (252)
T ss_dssp             HHHHHTTC---CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CC
T ss_pred             HHHHhcCC---ceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCC
Confidence            99887764   689999999988765 6899999864 33443  356789999999999999998754331100000  


Q ss_pred             --------------------HHHHHH--------hhhhhhhh------hcCCcccchHHHHHHHhcCCcEEEEeeeccCC
Q 022248          241 --------------------LKFWQN--------VVDPLQQI------VSDGCHLTRQTGNNISEAGFSSVELGNAFLSN  286 (300)
Q Consensus       241 --------------------~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~  286 (300)
                                          ......        ........      .....++.+++. +|.++||+.+++...+-..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~  235 (252)
T 1wzn_A          157 VVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRE  235 (252)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSS
T ss_pred             eeeeccCCCeeEEEEeecccccccceeeheeeeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccc
Confidence                                000000        00000000      011356778887 8999999999886544333


Q ss_pred             cccccceeeEEecC
Q 022248          287 ASLISPHVYGIAHK  300 (300)
Q Consensus       287 ~~~~~~~~~~~~~k  300 (300)
                      .....+.++.+|+|
T Consensus       236 ~~~~~~r~~~va~k  249 (252)
T 1wzn_A          236 LSPNDMRYWIVGIA  249 (252)
T ss_dssp             CCTTCCEEEEEEEC
T ss_pred             cCCCCceEEEEEEe
Confidence            44445667777766

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.82  E-value=3.5e-20  Score=159.57  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC----------------------------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP----------------------------  174 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~----------------------------  174 (300)
                      .++.+|||||||+|.++..+++. .+.+++|+|+++.+++.|++++...+..                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            36789999999999999999875 5679999999999999999886543311                            


Q ss_pred             ----------------------------CCCEEEEecccCcCC-----CCCCcccEEEEcccccCcc------cHHHHHH
Q 022248          175 ----------------------------LTNFKFLQAVGEAIP-----VSDASVDAVVGTLVLCSVK------DVDMTLQ  215 (300)
Q Consensus       175 ----------------------------~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~------~~~~~l~  215 (300)
                                                  ..+++|+++|+...+     +.+++||+|+|..+++|+.      +...+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        148999999997654     5678999999999997774      6678999


Q ss_pred             HHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh--cCCcEEEEeee
Q 022248          216 EVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE--AGFSSVELGNA  282 (300)
Q Consensus       216 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGf~~v~~~~~  282 (300)
                      +++++|||||+|++.......   .. .................+.++++.++|.+  +||+.+++...
T Consensus       205 ~~~~~LkpGG~lil~~~~~~~---y~-~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQPWSS---YG-KRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHEEEEEEEEEECCCHHH---HH-TTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHhCCCcEEEEecCCchh---hh-hhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            999999999999996532210   00 00000011111111223446799999998  99998887654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.82  E-value=3.3e-19  Score=149.11  Aligned_cols=168  Identities=25%  Similarity=0.310  Sum_probs=121.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-  202 (300)
                      .++.+|||+|||+|.++..+++.  .+++|+|+++.+++.|+++....+   .++.++.+|+..++++ ++||+|++.. 
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~  105 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVDAITILCD  105 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEEEEEECTT
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcCEEEEeCC
Confidence            35689999999999999998865  799999999999999999987765   3789999999988876 8899999986 


Q ss_pred             cccCc---ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH----------------HHhhhh--------h----
Q 022248          203 VLCSV---KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW----------------QNVVDP--------L----  251 (300)
Q Consensus       203 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~----------------~~~~~~--------~----  251 (300)
                      +++|+   .+...+++++.++|||||++++..+....   ....+                ......        .    
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (243)
T 3d2l_A          106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYK---METLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFI  182 (243)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHH---HHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHH---HHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEE
Confidence            88888   45678899999999999999986533210   00000                000000        0    


Q ss_pred             ---h-------hhhcCCcccchHHHHHHHhcCCcEEEEeeeccCCccc-ccceeeEEecC
Q 022248          252 ---Q-------QIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSNASL-ISPHVYGIAHK  300 (300)
Q Consensus       252 ---~-------~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~-~~~~~~~~~~k  300 (300)
                         .       .......++.+++.++|+++||+++++...+...+.. ..+.++.+++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K  242 (243)
T 3d2l_A          183 EGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK  242 (243)
T ss_dssp             ECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred             EcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence               0       0001124678999999999999999987543332222 34556666665

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.82  E-value=4.5e-19  Score=156.66  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=122.0

Q ss_pred             HHHHhhc-CC-CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCC
Q 022248          117 QLFDNLR-GK-AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSD  192 (300)
Q Consensus       117 ~~~~~~~-~~-~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~  192 (300)
                      .+++.+. .+ +.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++++...++. ++++++.+|+.+.+ +..
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  246 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFFEKNLLDARNFEG  246 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEEECCTTCGGGGTT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEEeCCcccCcccCC
Confidence            3444433 34 78999999999999999987 46789999999 88999999998887764 57999999998875 234


Q ss_pred             CcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          193 ASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      +.||+|++..++|++++.  ..++++++++|||||++++.+.......  .....+.... .+........++.++|.++
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~~l  325 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLH-MMVNTNHGELHPTPWIAGV  325 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHH-HHHHSTTCCCCCHHHHHHH
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHH-HHhhCCCCCcCCHHHHHHH
Confidence            669999999999999865  7899999999999999999987654432  1111111111 1111113446788999999


Q ss_pred             HHhcCCcEEEE
Q 022248          269 ISEAGFSSVEL  279 (300)
Q Consensus       269 l~~aGf~~v~~  279 (300)
                      |+++||++++.
T Consensus       326 l~~aGf~~~~~  336 (352)
T 3mcz_A          326 VRDAGLAVGER  336 (352)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCceeee
Confidence            99999999884

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.82  E-value=1.4e-19  Score=149.71  Aligned_cols=115  Identities=24%  Similarity=0.325  Sum_probs=97.5

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +...+.+.+ .++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|+++....+   .+++++.+|+..++++++
T Consensus        28 ~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~  102 (227)
T 1ve3_A           28 LEPLLMKYM-KKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDK  102 (227)
T ss_dssp             HHHHHHHSC-CSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTT
T ss_pred             HHHHHHHhc-CCCCeEEEEeccCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCCCCC
Confidence            333344333 357899999999999999988753 499999999999999999987765   479999999999888888


Q ss_pred             cccEEEEccc--ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          194 SVDAVVGTLV--LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       194 ~~D~v~~~~~--l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +||+|++..+  +++..+...+++++.++|||||++++.+..
T Consensus       103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            9999999998  666678889999999999999999998764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.81  E-value=4.8e-19  Score=144.06  Aligned_cols=144  Identities=15%  Similarity=0.128  Sum_probs=113.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++ +|||||||+|.++..+++. +.+++|+|+++.+++.|+++....+.   ++.++.+|+..+++++++||+|++....
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~v~~~~~~  104 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDIVADAWEGIVSIFCH  104 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence            45 9999999999999998865 66999999999999999999887764   7899999999998888999999996543


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeecc
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      .+..+...+++++.++|||||++++..+.......         ...........++.+++.++|+  ||+++.++....
T Consensus       105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~  173 (202)
T 2kw5_A          105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY---------NTGGPKDLDLLPKLETLQSELP--SLNWLIANNLER  173 (202)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG---------TSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC---------CCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEe
Confidence            33356788999999999999999999876543210         0000011123577889999998  999988875443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.81  E-value=1.3e-19  Score=143.41  Aligned_cols=134  Identities=19%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++... +++|+|+++.+++.++++       .++++++.+|   +++++++||+|++..+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~v~~~~~d---~~~~~~~~D~v~~~~~   84 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-------FDSVITLSDP---KEIPDNSVDFILFANS   84 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-------CTTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-------CCCcEEEeCC---CCCCCCceEEEEEccc
Confidence            4677999999999999999987544 999999999999999987       1589999998   6777899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++++++...+++++.++|||||++++.++........        .     .....++.+++.++|+  ||++++.....
T Consensus        85 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~l~--Gf~~~~~~~~~  149 (170)
T 3i9f_A           85 FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIG--------P-----PLSIRMDEKDYMGWFS--NFVVEKRFNPT  149 (170)
T ss_dssp             STTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS--------S-----CGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred             hhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccC--------c-----hHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence            9999999999999999999999999998765432110        0     0112467789999998  99998887553

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.81  E-value=3.8e-20  Score=154.47  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=89.5

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEE
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~  200 (300)
                      ..++.+|||||||+|.++..+++....+++|+|+|+.|++.|+++.+..+   .++.++.+|++++  ++++++||+|++
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEEEEE
Confidence            45678999999999999999976555589999999999999999876655   4799999999988  888899999999


Q ss_pred             -ccccc----CcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          201 -TLVLC----SVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       201 -~~~l~----~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       .+.+.    +..+...++++++++|||||+|++.+.
T Consensus       135 d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             CCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence             55541    223345779999999999999999764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.80  E-value=2.3e-18  Score=146.69  Aligned_cols=157  Identities=14%  Similarity=0.094  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhc--CCCCeEEEECCCC---ChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248          113 GYKSQLFDNLR--GKAKKVLEIGIGT---GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (300)
Q Consensus       113 ~~~~~~~~~~~--~~~~~vLDiGcG~---G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  186 (300)
                      .++.+++..+.  .+..+|||||||+   |.++..+.+ .++.+|+++|+|+.|++.|++++...    ++++|+.+|+.
T Consensus        63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~  138 (274)
T 2qe6_A           63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVR  138 (274)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCC
Confidence            33444444443  2347999999999   987766654 46789999999999999999987432    48999999996


Q ss_pred             cCC-----------CCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhh
Q 022248          187 AIP-----------VSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ  253 (300)
Q Consensus       187 ~~~-----------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (300)
                      +.+           ++.++||+|++..++|++++  ...++++++++|+|||+|++.+..... ......+...+.... 
T Consensus       139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~~~~~~~~~~~~~~~-  216 (274)
T 2qe6_A          139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-LPAQQKLARITRENL-  216 (274)
T ss_dssp             CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-CHHHHHHHHHHHHHH-
T ss_pred             CchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-hHHHHHHHHHHHhcC-
Confidence            531           22358999999999999987  789999999999999999999876532 111111222111111 


Q ss_pred             hhcCCcccchHHHHHHHhcCCcEEE
Q 022248          254 IVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                       .....++.+++.++|  .||++++
T Consensus       217 -~~~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          217 -GEGWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             -SCCCCBCHHHHHHTT--TTCEECT
T ss_pred             -CCCccCCHHHHHHHh--CCCeEcc
Confidence             123456888999999  6998765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=4.2e-19  Score=148.82  Aligned_cols=153  Identities=12%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-----CcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-----ASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~v  198 (300)
                      .++.+|||||||+|.++..+++... +++|+|+|+.+++.++++..     ..++.++++|+.+++...     ..||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT-----AANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC-----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc-----ccCceEEECcccccccccccccccCccEE
Confidence            4678999999999999999987544 99999999999999998762     248999999998865321     249999


Q ss_pred             EEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhh---hh----hhhhcCCcccchHHHHHH
Q 022248          199 VGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVD---PL----QQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       199 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~l  269 (300)
                      ++..++++++  +...+++++.++|||||++++.++..........+......   ..    ........++.+++.++|
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            9999999998  78899999999999999999998755432111111111000   00    011112345778999999


Q ss_pred             HhcCCcEEEEeeecc
Q 022248          270 SEAGFSSVELGNAFL  284 (300)
Q Consensus       270 ~~aGf~~v~~~~~~~  284 (300)
                        +||++++.....+
T Consensus       209 --aGf~~~~~~~~~~  221 (245)
T 3ggd_A          209 --PDFEILSQGEGLF  221 (245)
T ss_dssp             --TTEEEEEEECCBC
T ss_pred             --CCCEEEecccccc
Confidence              9999988765544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.80  E-value=1e-19  Score=164.38  Aligned_cols=160  Identities=18%  Similarity=0.267  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      ......+++.+. .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++    ++......|...+.+.+++
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence            344455555554 46789999999999999999874 56999999999999999876    3221111233445556677


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHH-hhhhhhhhhcCCcccchHHHHHH
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN-VVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      ++++||+|++.++++|++++..++++++++|||||++++..+...      ..... .+.... ..+..+++.+++.+++
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~~~~~~~~~-~~~~~~~s~~~l~~ll  240 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG------DIVAKTSFDQIF-DEHFFLFSATSVQGMA  240 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH------HHHHHTCGGGCS-TTCCEECCHHHHHHHH
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH------Hhhhhcchhhhh-hhhhhcCCHHHHHHHH
Confidence            789999999999999999999999999999999999999764421      11111 111111 1233456788999999


Q ss_pred             HhcCCcEEEEeeec
Q 022248          270 SEAGFSSVELGNAF  283 (300)
Q Consensus       270 ~~aGf~~v~~~~~~  283 (300)
                      +++||++++++...
T Consensus       241 ~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          241 QRCGFELVDVQRLP  254 (416)
T ss_dssp             HHTTEEEEEEEEEC
T ss_pred             HHcCCEEEEEEEcc
Confidence            99999999988754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.80  E-value=2.4e-18  Score=153.23  Aligned_cols=161  Identities=20%  Similarity=0.255  Sum_probs=120.2

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      .+++.+. .++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++. ++++|+.+|+.+ +++. .
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~~-~  248 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFK-PLPV-T  248 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCSC-C
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCC-cCCC-C
Confidence            3444433 46789999999999999999874 5679999999 99999999999888764 589999999865 3443 4


Q ss_pred             ccEEEEcccccCcccHH--HHHHHHHHcccCCcEEEEEec--ccCCCchHHHHHHHhhhh-hhhhhcCCcccchHHHHHH
Q 022248          195 VDAVVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEH--VAAKDGTFLKFWQNVVDP-LQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  269 (300)
                      ||+|++..+++++++..  .+++++.++|||||++++.+.  .......  ..+...+.. +....+...++.++|.++|
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  326 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLA  326 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC--cchhhhcchHHHHhCCCcCCCHHHHHHHH
Confidence            99999999999998774  899999999999999999987  4322211  111111111 1112234567889999999


Q ss_pred             HhcCCcEEEEeeec
Q 022248          270 SEAGFSSVELGNAF  283 (300)
Q Consensus       270 ~~aGf~~v~~~~~~  283 (300)
                      +++||+++++....
T Consensus       327 ~~aGf~~~~~~~~~  340 (374)
T 1qzz_A          327 GSAGLALASERTSG  340 (374)
T ss_dssp             HTTTEEEEEEEEEC
T ss_pred             HHCCCceEEEEECC
Confidence            99999999887653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.80  E-value=1.5e-18  Score=152.27  Aligned_cols=149  Identities=11%  Similarity=0.138  Sum_probs=117.3

Q ss_pred             CeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  205 (300)
                      .+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++. ++++++.+|+.+ +++ +.||+|++..++|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~  244 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG  244 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence            89999999999999999874 5679999999 99999999987766543 589999999977 555 6799999999999


Q ss_pred             CcccHH--HHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          206 SVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       206 ~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++++..  .++++++++|+|||++++.+.......  .........   +........++.++|.++|+++||+.+++..
T Consensus       245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  321 (334)
T 2ip2_A          245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVH---LFMACAGRHRTTEEVVDLLGRGGFAVERIVD  321 (334)
T ss_dssp             GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHH---HHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhH---hHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence            987765  899999999999999999987654322  111111110   1111234456889999999999999988875


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       322 ~  322 (334)
T 2ip2_A          322 L  322 (334)
T ss_dssp             E
T ss_pred             C
Confidence            4

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.79  E-value=6.5e-18  Score=149.09  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=116.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++ .+..+++..|. +.+++.|++.+...+.  ++++|+.+|+.+.+.+  .+|+|++.+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~~gD~~~~~~~--~~D~~~~~~  252 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQEGDFFKDPLP--EADLYILAR  252 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEEESCTTTSCCC--CCSEEEEES
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--CceeeecCccccCCCC--CceEEEeee
Confidence            3567999999999999999987 57788999997 8899999887754442  6999999999876654  579999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc---hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++|+++|.  ..+|+++++.|+|||++++.+....++.   ....+..-   .+.....+..++.++|+++|+++||+.+
T Consensus       253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl---~ml~~~~g~ert~~e~~~ll~~AGf~~v  329 (353)
T 4a6d_A          253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSL---NMLVQTEGQERTPTHYHMLLSSAGFRDF  329 (353)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHH---HHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred             ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHH---HHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence            99999876  4689999999999999999997654432   12221110   1111223456788999999999999999


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      ++...
T Consensus       330 ~v~~~  334 (353)
T 4a6d_A          330 QFKKT  334 (353)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            98754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.79  E-value=8.3e-19  Score=143.31  Aligned_cols=154  Identities=17%  Similarity=0.154  Sum_probs=115.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..++...+.+++|+|+|+.+++.+++++...+   .++.++.+|+..+++++++||+|++..+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~   98 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYSYGT   98 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEEcCh
Confidence            4678999999999998555444467799999999999999999987765   3688999999999988899999999999


Q ss_pred             ccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHH--HHHHHhhhhhhh--hhcCCcccchHHHHHHHhcCCcEE
Q 022248          204 LCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL--KFWQNVVDPLQQ--IVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       204 l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++|+  .+...+++++.++|||||++++.++.........  ......+.....  .....+++.+++.++|.++||...
T Consensus        99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~  178 (209)
T 2p8j_A           99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK  178 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence            9999  6778999999999999999999887653321000  000000000000  011135677899999999999866


Q ss_pred             EEe
Q 022248          278 ELG  280 (300)
Q Consensus       278 ~~~  280 (300)
                      +..
T Consensus       179 ~~~  181 (209)
T 2p8j_A          179 EDR  181 (209)
T ss_dssp             EEE
T ss_pred             eee
Confidence            554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.78  E-value=3.9e-18  Score=151.08  Aligned_cols=158  Identities=16%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             HHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       118 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+. .++.+|||||||+|.++..+++ .+..+++++|+ +.+++.|++++...++. ++++++.+|+.+ +++. .|
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~~-~~  250 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFE-PLPR-KA  250 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCSS-CE
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCC-CCCC-Cc
Confidence            344443 4578999999999999999987 35679999999 99999999999888764 589999999865 3333 49


Q ss_pred             cEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecc-cCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          196 DAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHV-AAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       196 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      |+|++..+++++++.  ..+++++.++|||||++++.+.. .....  ....+....   +....+...++.++|.++|+
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~e~~~ll~  327 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLR---MLVFLGGALRTREKWDGLAA  327 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHH---HHHHHSCCCCBHHHHHHHHH
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHH---HhhhcCCcCCCHHHHHHHHH
Confidence            999999999999876  47999999999999999999876 32211  122211111   11112345678899999999


Q ss_pred             hcCCcEEEEeee
Q 022248          271 EAGFSSVELGNA  282 (300)
Q Consensus       271 ~aGf~~v~~~~~  282 (300)
                      ++||+++++...
T Consensus       328 ~aGf~~~~~~~~  339 (360)
T 1tw3_A          328 SAGLVVEEVRQL  339 (360)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCeEEEEEeC
Confidence            999999988765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.78  E-value=1.1e-19  Score=156.81  Aligned_cols=109  Identities=14%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCC----CCEEEEeccc------CcC--CCCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL----TNFKFLQAVG------EAI--PVSD  192 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~d~------~~~--~~~~  192 (300)
                      ++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+...    -+++|.+.|+      +.+  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            478999999999987776666556799999999999999999987665310    0267878777      333  3567


Q ss_pred             CcccEEEEcccccCc---ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSV---KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++||+|+|.+++|++   .+...++++++++|||||++++..+.
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            899999999999875   45678999999999999999998754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.78  E-value=3.4e-18  Score=137.08  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSD  192 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~  192 (300)
                      +...++.....++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++  ++++++..+.+.++ +.+
T Consensus        11 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A           11 MSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI--ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC--CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCcHHHHHhhcc
Confidence            344455555567899999999999999999976 78999999999999999999998887  48999998887753 457


Q ss_pred             CcccEEEEcc-cccC--------cccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          193 ASVDAVVGTL-VLCS--------VKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       193 ~~~D~v~~~~-~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      ++||+|++.. .+.+        ..+...+++++.++|||||++++..+...
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  139 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH  139 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence            8899999863 2221        13445788999999999999999886543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.78  E-value=1.8e-18  Score=147.09  Aligned_cols=161  Identities=25%  Similarity=0.434  Sum_probs=111.6

Q ss_pred             cccCCCchhhhhhhh--cccCCcccCCCCCCCCCCCChHHHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Q 022248           42 SCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLF  119 (300)
Q Consensus        42 ~~~c~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (300)
                      .+.|.++|.++....  +++++.    .....+.+.+..++...+.            .++....  |.. +...+..++
T Consensus        18 ~~~C~~~~~~~~~~~Gy~~~~~~----~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~-~~~~~~~~~   78 (269)
T 1p91_A           18 SYICPQRHQFDMAKEGYVNLLPV----QHKRSRDPGDSAEMMQARR------------AFLDAGH--YQP-LRDAIVAQL   78 (269)
T ss_dssp             EEECTTCCEEEBCTTSCEECSCS----SSSCSCCCSSSHHHHHHHH------------HHHTTTT--THH-HHHHHHHHH
T ss_pred             EEECCCCCcCCcCCCEEEEeecc----cccCCCCCCCCHHHHHHHH------------HHHhCCC--cHH-HHHHHHHHH
Confidence            578987777665444  455544    3333334555555554321            1111111  222 112222222


Q ss_pred             Hh-hcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccE
Q 022248          120 DN-LRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       120 ~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      .. +..++.+|||||||+|.++..+++. ++.+++|+|+++.+++.|+++.       .++.+..+|+..+++++++||+
T Consensus        79 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~  151 (269)
T 1p91_A           79 RERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDA  151 (269)
T ss_dssp             HHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEE
T ss_pred             HHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeE
Confidence            22 2256789999999999999999875 4679999999999999998863       4788999999999988899999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      |++.++..       .++++.++|||||++++..+...
T Consensus       152 v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          152 IIRIYAPC-------KAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             EEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence            99977644       36999999999999999986543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.78  E-value=3e-18  Score=145.02  Aligned_cols=155  Identities=19%  Similarity=0.297  Sum_probs=111.4

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      ..++.....++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++..       . .++.+|+..+++++++|
T Consensus        45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-------~-~~~~~d~~~~~~~~~~f  115 (260)
T 2avn_A           45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-------K-NVVEAKAEDLPFPSGAF  115 (260)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-------S-CEEECCTTSCCSCTTCE
T ss_pred             HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-------C-CEEECcHHHCCCCCCCE
Confidence            3344443347789999999999999999865 6799999999999999988742       1 27899999999888999


Q ss_pred             cEEEEcccccCc-ccHHHHHHHHHHcccCCcEEEEEecccCCC-------chHHHHHHHhhhhhhhh-------hcCCcc
Q 022248          196 DAVVGTLVLCSV-KDVDMTLQEVRRVLKPGGIYLFVEHVAAKD-------GTFLKFWQNVVDPLQQI-------VSDGCH  260 (300)
Q Consensus       196 D~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~  260 (300)
                      |+|++..++.++ ++...+++++.++|||||++++..++....       ..+ .............       ....++
T Consensus       116 D~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (260)
T 2avn_A          116 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW-DQITRFLKTQTTSVGTTLFSFNSYAF  194 (260)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCH-HHHHHHHHHCEEEEECSSEEEEEECB
T ss_pred             EEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhH-HHHHHHHhccccccCCCceeEEEecc
Confidence            999998876665 788999999999999999999987654210       000 0000001000000       001256


Q ss_pred             cchHHHHHHHhcCCcEEEEeeec
Q 022248          261 LTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       261 ~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      +.+++.++   +||+++++....
T Consensus       195 ~~~~l~~l---aGf~~~~~~~~~  214 (260)
T 2avn_A          195 KPEDLDSL---EGFETVDIRGIG  214 (260)
T ss_dssp             CGGGGSSC---TTEEEEEEEEEC
T ss_pred             CHHHHHHh---cCceEEEEECCC
Confidence            77788777   999998887544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.78  E-value=8.2e-18  Score=144.25  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=120.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++   ++.++.+|+..+++ +++||+|++..++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-~~~fD~i~~~~~~  194 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL---NISTALYDINAANI-QENYDFIVSTVVF  194 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC---ceEEEEeccccccc-cCCccEEEEccch
Confidence            6789999999999999999876 66999999999999999999988775   79999999998877 7899999999999


Q ss_pred             cCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      ++++  +...+++++.++|+|||+++++..........            .......++.+++.+++..  |+++..+..
T Consensus       195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  260 (286)
T 3m70_A          195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC------------PLPFSFTFAENELKEYYKD--WEFLEYNEN  260 (286)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC------------SSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC------------CCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence            9984  45689999999999999988876544332110            0111235567788888854  998887543


Q ss_pred             ccC-------CcccccceeeEEecC
Q 022248          283 FLS-------NASLISPHVYGIAHK  300 (300)
Q Consensus       283 ~~~-------~~~~~~~~~~~~~~k  300 (300)
                      ...       ......+++.-+|+|
T Consensus       261 ~~~~~~~~~~g~~~~~~~~~l~arK  285 (286)
T 3m70_A          261 MGELHKTDENGNRIKMKFATMLARK  285 (286)
T ss_dssp             EEEEEEECSSCCEEEEEEEEEEEEC
T ss_pred             CCeeeeccCCCCEEEEEEEEEEEec
Confidence            211       112233566677776

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.78  E-value=6.3e-18  Score=150.06  Aligned_cols=148  Identities=13%  Similarity=0.092  Sum_probs=112.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++.        ++++|+.+|+.+ +++++  |+|++.+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p~~--D~v~~~~  269 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GVPKG--DAIFIKW  269 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CCCCC--CEEEEec
Confidence            3568999999999999999987 46789999999 8888776542        489999999986 66644  9999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhh-hh-hhhcCCcccchHHHHHHHhcCCcE
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDP-LQ-QIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      ++|++++.  ..+|++++++|||||++++.+.......  ............ +. .......++.++|.++|+++||+.
T Consensus       270 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~  349 (368)
T 3reo_A          270 ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRG  349 (368)
T ss_dssp             CGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCee
Confidence            99999765  4789999999999999999987654332  111111111111 11 112445678899999999999999


Q ss_pred             EEEeeec
Q 022248          277 VELGNAF  283 (300)
Q Consensus       277 v~~~~~~  283 (300)
                      +++....
T Consensus       350 v~~~~~~  356 (368)
T 3reo_A          350 FKVASCA  356 (368)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEeC
Confidence            9987654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.78  E-value=2.3e-18  Score=151.88  Aligned_cols=155  Identities=16%  Similarity=0.092  Sum_probs=112.9

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      .+++.+. .++.+|||||||+|.++..+++ .+..+++++|+ +.++.  +++.+..++. ++++|+.+|+. .+++  +
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~~~d~~-~~~p--~  247 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVVEGDFL-REVP--H  247 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEEECCTT-TCCC--C
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEEecCCC-CCCC--C
Confidence            3444443 4578999999999999999987 46778999999 44444  2222222332 57999999996 3444  8


Q ss_pred             ccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          195 VDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ||+|++.+++|++++.  ..++++++++|||||++++.+.......  .........   +........++.++|.++|+
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~---~~~~~~~~~~t~~e~~~ll~  324 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFM---MLAARTGQERTAAELEPLFT  324 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHH---HHHTTSCCCCBHHHHHHHHH
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChh---hhhcCCCcCCCHHHHHHHHH
Confidence            9999999999999887  6899999999999999999987554432  111121111   11113345678899999999


Q ss_pred             hcCCcEEEEee
Q 022248          271 EAGFSSVELGN  281 (300)
Q Consensus       271 ~aGf~~v~~~~  281 (300)
                      ++||+++++..
T Consensus       325 ~aGf~~~~~~~  335 (348)
T 3lst_A          325 AAGLRLDRVVG  335 (348)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCceEEEEE
Confidence            99999999876

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.78  E-value=1.1e-17  Score=148.32  Aligned_cols=148  Identities=15%  Similarity=0.117  Sum_probs=112.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.|++.        ++++|+.+|+.+ +++.+  |+|++.+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~p~~--D~v~~~~  267 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EVPSG--DTILMKW  267 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CCCCC--CEEEehH
Confidence            3568999999999999999987 46789999999 8888776542        589999999987 77654  9999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCch--HHHHHHHhhhh-hh-hhhcCCcccchHHHHHHHhcCCcE
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGT--FLKFWQNVVDP-LQ-QIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      ++|++++.  ..+|++++++|||||++++.+........  ........... +. .......++.++|.++|+++||+.
T Consensus       268 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~  347 (364)
T 3p9c_A          268 ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTG  347 (364)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCE
T ss_pred             HhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCce
Confidence            99999654  57899999999999999999876544321  11111111111 11 112345678899999999999999


Q ss_pred             EEEeeec
Q 022248          277 VELGNAF  283 (300)
Q Consensus       277 v~~~~~~  283 (300)
                      +++....
T Consensus       348 v~~~~~~  354 (364)
T 3p9c_A          348 VKSTYIY  354 (364)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcC
Confidence            9987653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.77  E-value=2.2e-17  Score=134.46  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=103.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++++..++  ++++++.+|+.+.....+.||+|++..
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA--RNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC--TTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            46789999999999999999874 457999999999999999999988886  489999999866543447899999988


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      .++   +...+++++.++|||||++++......                         ..+++.+.++++|| .+++.
T Consensus       117 ~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------~~~~~~~~l~~~g~-~~~~~  165 (204)
T 3e05_A          117 SGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD-------------------------TLTKAVEFLEDHGY-MVEVA  165 (204)
T ss_dssp             CTT---CHHHHHHHHHHHCCTTCEEEEEECBHH-------------------------HHHHHHHHHHHTTC-EEEEE
T ss_pred             CCc---CHHHHHHHHHHhcCCCeEEEEEecccc-------------------------cHHHHHHHHHHCCC-ceeEE
Confidence            765   778899999999999999999764321                         12377788999999 44443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.77  E-value=7.2e-18  Score=150.00  Aligned_cols=147  Identities=17%  Similarity=0.186  Sum_probs=111.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.|++.        ++++++.+|+.+ +++.  ||+|++..
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~~~--~D~v~~~~  275 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFA-SVPQ--GDAMILKA  275 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCC--EEEEEEES
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCccc-CCCC--CCEEEEec
Confidence            3568999999999999999987 45678999999 8888877642        479999999977 6653  99999999


Q ss_pred             cccCcccHH--HHHHHHHHcccCCcEEEEEecccCCCch--HHHHHHHhhhh-hhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          203 VLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVAAKDGT--FLKFWQNVVDP-LQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       203 ~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++|++++..  .++++++++|||||++++.+........  ........+.. +........++.++|.++|+++||+.+
T Consensus       276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  355 (372)
T 1fp1_D          276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF  355 (372)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceE
Confidence            999998887  8999999999999999999865543321  10001111111 111123456688999999999999999


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      ++...
T Consensus       356 ~~~~~  360 (372)
T 1fp1_D          356 QVACR  360 (372)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.76  E-value=4.2e-17  Score=132.87  Aligned_cols=145  Identities=13%  Similarity=0.062  Sum_probs=111.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++++..++. ++++++.+|+.+.....+.||+|++...
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~  131 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAPAALADLPLPEAVFIGGG  131 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchhhhcccCCCCCEEEECCc
Confidence            46789999999999999999987 789999999999999999999988874 4899999999884323467999998764


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      +    +.. +++++.++|||||++++......                         ...++.+.+++.||+++.+....
T Consensus       132 ~----~~~-~l~~~~~~LkpgG~lv~~~~~~~-------------------------~~~~~~~~l~~~g~~i~~i~~~~  181 (204)
T 3njr_A          132 G----SQA-LYDRLWEWLAPGTRIVANAVTLE-------------------------SETLLTQLHARHGGQLLRIDIAQ  181 (204)
T ss_dssp             C----CHH-HHHHHHHHSCTTCEEEEEECSHH-------------------------HHHHHHHHHHHHCSEEEEEEEEE
T ss_pred             c----cHH-HHHHHHHhcCCCcEEEEEecCcc-------------------------cHHHHHHHHHhCCCcEEEEEeec
Confidence            4    455 89999999999999999774321                         01267788889999877765322


Q ss_pred             cC------CcccccceeeEEecC
Q 022248          284 LS------NASLISPHVYGIAHK  300 (300)
Q Consensus       284 ~~------~~~~~~~~~~~~~~k  300 (300)
                      ..      ......|.+.-.++|
T Consensus       182 ~~~~~~~~~~~~~~Pv~i~~~~~  204 (204)
T 3njr_A          182 AEPLGRMRGWSASRPQLQWSGQR  204 (204)
T ss_dssp             EEEETTEEEECCCCCEEEEEEEC
T ss_pred             ccccCccceeecCCCEEEEEecC
Confidence            21      122355666655554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.76  E-value=1.3e-17  Score=141.40  Aligned_cols=102  Identities=10%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             CCCCeEEEECCCCChhH-HHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNL-KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~-~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++ ..+++..+.+|+|+|+++.+++.|+++++..++  ++++|+++|+.+++  +++||+|++..
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhCC--CCCcCEEEECC
Confidence            57899999999999766 445555788999999999999999999998887  59999999998876  68999999865


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .   .++...+++++.++|||||+|++.+.
T Consensus       197 ~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          197 L---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             T---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             C---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            4   57889999999999999999999763

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.76  E-value=1.2e-17  Score=147.40  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=111.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||||||+|.++..+++. ++.+++++|+ +.+++.|++.        ++++|+.+|+.+ +++  .||+|++.+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p--~~D~v~~~~  254 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS--------NNLTYVGGDMFT-SIP--NADAVLLKY  254 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB--------TTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC--------CCcEEEeccccC-CCC--CccEEEeeh
Confidence            45689999999999999999874 6779999999 9998887642        369999999966 555  399999999


Q ss_pred             cccCcccHH--HHHHHHHHcccC---CcEEEEEecccCCCchH--HHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          203 VLCSVKDVD--MTLQEVRRVLKP---GGIYLFVEHVAAKDGTF--LKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       203 ~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      ++|++++..  .++++++++|||   ||++++.+.........  .......+...........++.++|.++|+++||+
T Consensus       255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~  334 (352)
T 1fp2_A          255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ  334 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred             hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCC
Confidence            999998877  899999999999   99999998765443211  01111111110000123456789999999999999


Q ss_pred             EEEEeee
Q 022248          276 SVELGNA  282 (300)
Q Consensus       276 ~v~~~~~  282 (300)
                      .+++...
T Consensus       335 ~~~~~~~  341 (352)
T 1fp2_A          335 HYKISPL  341 (352)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEec
Confidence            9988763

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.76  E-value=8.9e-18  Score=136.89  Aligned_cols=133  Identities=16%  Similarity=0.088  Sum_probs=108.9

Q ss_pred             HHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      +.....++.+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++...++.  +++++.+|+...  .+++||+|
T Consensus        54 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--~~~~fD~i  129 (205)
T 3grz_A           54 IERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY--DIALQKTSLLAD--VDGKFDLI  129 (205)
T ss_dssp             HHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--CCEEEESSTTTT--CCSCEEEE
T ss_pred             HHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEecccccc--CCCCceEE
Confidence            33334577899999999999999988765669999999999999999999888864  599999998764  35899999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++...+++   ...+++++.++|+|||++++.+....                         ..+++.++++++||+.++
T Consensus       130 ~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~~~~~~~Gf~~~~  181 (205)
T 3grz_A          130 VANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL-------------------------QLPKIEQALAENSFQIDL  181 (205)
T ss_dssp             EEESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHHTTEEEEE
T ss_pred             EECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc-------------------------cHHHHHHHHHHcCCceEE
Confidence            99876654   46789999999999999999764332                         124788999999999988


Q ss_pred             Eeeec
Q 022248          279 LGNAF  283 (300)
Q Consensus       279 ~~~~~  283 (300)
                      +....
T Consensus       182 ~~~~~  186 (205)
T 3grz_A          182 KMRAG  186 (205)
T ss_dssp             EEEET
T ss_pred             eeccC
Confidence            77543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.76  E-value=2.9e-18  Score=142.08  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=103.4

Q ss_pred             HHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCC-C
Q 022248          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVS-D  192 (300)
Q Consensus       115 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~  192 (300)
                      ...++..+..++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++       .++++++++|+ +.+|++ +
T Consensus        38 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~d~~~~~~~~~~  109 (226)
T 3m33_A           38 FDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN-------APHADVYEWNGKGELPAGLG  109 (226)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH-------CTTSEEEECCSCSSCCTTCC
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh-------CCCceEEEcchhhccCCcCC
Confidence            33444444457889999999999999999876 67999999999999999987       14799999999 668887 8


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      ++||+|++.      .+...+++++.++|||||+++...                          ...+.+++.+.+.++
T Consensus       110 ~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~--------------------------~~~~~~~~~~~l~~~  157 (226)
T 3m33_A          110 APFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG--------------------------PRLNVPEVPERLAAV  157 (226)
T ss_dssp             CCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE--------------------------SSSCCTHHHHHHHHT
T ss_pred             CCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC--------------------------CcCCHHHHHHHHHHC
Confidence            999999987      355667899999999999999111                          123445889999999


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||+.+.+...
T Consensus       158 Gf~~~~~~~~  167 (226)
T 3m33_A          158 GWDIVAEDHV  167 (226)
T ss_dssp             TCEEEEEEEE
T ss_pred             CCeEEEEEee
Confidence            9998877644

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.75  E-value=6e-18  Score=139.00  Aligned_cols=104  Identities=18%  Similarity=0.204  Sum_probs=91.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....    +++.++++|+.+++ ++++||+|++..+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~  123 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW----SHISWAATDILQFS-TAELFDLIVVAEV  123 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC----SSEEEEECCTTTCC-CSCCEEEEEEESC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC----CCeEEEEcchhhCC-CCCCccEEEEccH
Confidence            45689999999999999999875 469999999999999999887543    37999999999988 6789999999999


Q ss_pred             ccCcccH---HHHHHHHHHcccCCcEEEEEecc
Q 022248          204 LCSVKDV---DMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++|++++   ..+++++.++|||||++++....
T Consensus       124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9999887   46799999999999999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.75  E-value=5.4e-17  Score=133.20  Aligned_cols=106  Identities=22%  Similarity=0.331  Sum_probs=90.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~  200 (300)
                      .++.+|||||||+|.++..+++. ++.+++|+|+++.+++.|++++...++  +++.++.+|+..++  +++++||+|++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            46789999999999999999874 577999999999999999999988887  48999999998876  77889999999


Q ss_pred             cccccCcc--------cHHHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVK--------DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++...+..        ....+++++.++|+|||.+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            86544322        12578999999999999999976

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.75  E-value=5e-17  Score=141.18  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=92.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CCCCEEEEecccCcCC----CC--C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-----PLTNFKFLQAVGEAIP----VS--D  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~----~~--~  192 (300)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.++++....+.     ...++.++++|++.++    ++  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            36789999999999999999876677999999999999999998865421     1137899999998876    53  4


Q ss_pred             CcccEEEEcccccCc----ccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          193 ASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++||+|++.+++|++    ++...+++++.++|||||++++..+..
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            589999999999887    345689999999999999999987643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.74  E-value=7.3e-18  Score=138.41  Aligned_cols=113  Identities=24%  Similarity=0.241  Sum_probs=95.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..++    .+++|+|+++.                 ++.++.+|+..+++++++||+|++..+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~  124 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVFCLS  124 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence            466899999999999988773    58999999986                 346788999999888899999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      +++ .+...+++++.++|+|||++++.+....                       ..+.+++.++|+++||+++....
T Consensus       125 l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~-----------------------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          125 LMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR-----------------------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             CCS-SCHHHHHHHHHHHEEEEEEEEEEECGGG-----------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCC-----------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence            975 8899999999999999999999875421                       12556999999999999887653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.74  E-value=4.2e-18  Score=140.87  Aligned_cols=153  Identities=19%  Similarity=0.255  Sum_probs=98.8

Q ss_pred             hcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCC-HHHHHHH---HHHHHHcCCCCCCEEEEecccCcCCCCCCccc
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPN-RKMEKYA---QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  196 (300)
                      ...++.+|||||||+|.++..+++ .++.+|+|+|+| +.|++.|   ++++...++  .++.|+.+|++.+|.  ..+|
T Consensus        21 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~~~d~~~l~~--~~~d   96 (225)
T 3p2e_A           21 IGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFVIAAAESLPF--ELKN   96 (225)
T ss_dssp             HTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEECCBTTBCCG--GGTT
T ss_pred             hCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEcCHHHhhh--hccC
Confidence            345778999999999999999985 467899999999 7777776   766666665  489999999998863  2334


Q ss_pred             EEEEcccccCcc--------cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          197 AVVGTLVLCSVK--------DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       197 ~v~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      .|.+..+...++        +...++++++|+|||||++++........... ..........    ...+...+++.++
T Consensus        97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~el~~~  171 (225)
T 3p2e_A           97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEA-EIKKRGLPLL----SKAYFLSEQYKAE  171 (225)
T ss_dssp             CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------C----CHHHHHSHHHHHH
T ss_pred             eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhc-hhhhcCCCCC----ChhhcchHHHHHH
Confidence            444433332222        23467999999999999999944222111000 0000000000    0011122359999


Q ss_pred             HHhcCCcEEEEeeec
Q 022248          269 ISEAGFSSVELGNAF  283 (300)
Q Consensus       269 l~~aGf~~v~~~~~~  283 (300)
                      ++++||+++.++...
T Consensus       172 l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          172 LSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             HHHcCCCeeeeeecC
Confidence            999999988887544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.74  E-value=3.9e-17  Score=136.50  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=106.5

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---CCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~  200 (300)
                      ++.+|||||||+|.++..++. .++.+++|+|+++.+++.|+++++..++.  +++++.+|++++++.   +++||+|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEeccHHHhcccccccCCccEEEE
Confidence            578999999999999999886 46779999999999999999999888874  799999999887754   678999999


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ..    +.+...+++++.++|||||++++......  .   ..                  .+++.+.++++||+.++..
T Consensus       148 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~--~---~~------------------~~~~~~~l~~~g~~~~~~~  200 (240)
T 1xdz_A          148 RA----VARLSVLSELCLPLVKKNGLFVALKAASA--E---EE------------------LNAGKKAITTLGGELENIH  200 (240)
T ss_dssp             EC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C--H---HH------------------HHHHHHHHHHTTEEEEEEE
T ss_pred             ec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc--h---HH------------------HHHHHHHHHHcCCeEeEEE
Confidence            66    46788999999999999999998642110  0   00                  1267788899999988876


Q ss_pred             eecc
Q 022248          281 NAFL  284 (300)
Q Consensus       281 ~~~~  284 (300)
                      ....
T Consensus       201 ~~~~  204 (240)
T 1xdz_A          201 SFKL  204 (240)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            5543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.73  E-value=3.8e-17  Score=132.24  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=94.7

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDA  197 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~  197 (300)
                      ....++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|+++++..++. ++++++.+|+..++ +.+++||+
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSCGGGGGGTCCSCEEE
T ss_pred             hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHhhhccCCceE
Confidence            33457789999999999999999875  4569999999999999999999988763 58999999998875 56689999


Q ss_pred             EEEccccc---------CcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          198 VVGTLVLC---------SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       198 v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      |++...+.         ...+...+++++.++|||||++++..+....
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~  144 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGD  144 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTT
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCC
Confidence            99876441         1124467999999999999999998865443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.73  E-value=6.7e-17  Score=132.60  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~  200 (300)
                      .++.+|||||||+|.++..+++ .++.+++|+|+++.+++.|++++...++  +++.++.+|+..++  +++++||.|++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~--~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            3678999999999999999987 4678999999999999999999988886  48999999998875  67889999998


Q ss_pred             cccccCccc--------HHHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .+...+...        ...+++++.++|||||.+++..
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            664433221        2578999999999999999976

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.73  E-value=4.1e-18  Score=139.60  Aligned_cols=113  Identities=22%  Similarity=0.240  Sum_probs=94.5

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccE
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      ++.....++.+|||+|||+|.++..+++....+++|+|+++.+++.++++...    .+++.++.+|+..+++++++||+
T Consensus        35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~  110 (215)
T 2pxx_A           35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH----VPQLRWETMDVRKLDFPSASFDV  110 (215)
T ss_dssp             HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----CTTCEEEECCTTSCCSCSSCEEE
T ss_pred             HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----CCCcEEEEcchhcCCCCCCcccE
Confidence            33333457889999999999999999875434899999999999999988653    14789999999998888899999


Q ss_pred             EEEcccccCcc---------------cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTLVLCSVK---------------DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++..+++++.               +...+++++.++|||||++++.++..
T Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            99988876543               56789999999999999999988543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.73  E-value=6e-17  Score=135.84  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHhhc--CCCCeEEEECCCC--ChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc
Q 022248          111 VAGYKSQLFDNLR--GKAKKVLEIGIGT--GPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (300)
Q Consensus       111 ~~~~~~~~~~~~~--~~~~~vLDiGcG~--G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d  184 (300)
                      -..++.+.+..+.  ....+|||||||+  +..+..+++  .++.+|+++|.|+.|++.|++++...+  ..++.|+++|
T Consensus        62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD  139 (277)
T 3giw_A           62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEAD  139 (277)
T ss_dssp             HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECC
T ss_pred             HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEec
Confidence            3445555555554  2346899999997  445555554  478899999999999999999875432  2479999999


Q ss_pred             cCcCC------CCCCccc-----EEEEcccccCccc---HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh
Q 022248          185 GEAIP------VSDASVD-----AVVGTLVLCSVKD---VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP  250 (300)
Q Consensus       185 ~~~~~------~~~~~~D-----~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  250 (300)
                      +.+++      ...+.||     .|+++.+|||+++   +..+++++.+.|+|||+|++.+............+...+..
T Consensus       140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~  219 (277)
T 3giw_A          140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA  219 (277)
T ss_dssp             TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence            98752      1124465     6889999999987   56899999999999999999987654332222233322222


Q ss_pred             hhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          251 LQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ...  ....++.+++...|.  ||++++
T Consensus       220 ~g~--p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          220 RNM--PMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             TTC--CCCCCCHHHHHHTTT--TSEECT
T ss_pred             cCC--CCccCCHHHHHHHhC--CCcccC
Confidence            111  123567899999994  999644

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.73  E-value=1.1e-16  Score=128.73  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..++.....+++|+|+++.+++.|+++++..++  ++++++++|+.+++  +++++||+|++.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL--SGATLRRGAVAAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC--SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEEccHHHHHhhccCCCccEEEEC
Confidence            46789999999999999988776666899999999999999999998887  48999999998763  446899999998


Q ss_pred             ccccCc-ccHHHHHHHHHH--cccCCcEEEEEeccc
Q 022248          202 LVLCSV-KDVDMTLQEVRR--VLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ~~l~~~-~~~~~~l~~~~~--~LkpgG~l~~~~~~~  234 (300)
                      ...++. ++...++.++.+  +|+|||++++.....
T Consensus       121 ~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          121 PPYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            877765 677889999999  999999999977543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.72  E-value=7.4e-17  Score=142.74  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      +..+|||||||+|.++..+++. +..+++++|+ +.+++.+++      .  ++++++.+|+.+ +++  .||+|++.++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~~~-~~~--~~D~v~~~~v  260 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N--ENLNFVGGDMFK-SIP--SADAVLLKWV  260 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C--SSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C--CCcEEEeCccCC-CCC--CceEEEEccc
Confidence            5679999999999999999874 5679999999 788877654      1  469999999987 665  4999999999


Q ss_pred             ccCcccHH--HHHHHHHHcccC---CcEEEEEecccCCCchH--HHHHHHhhhh-hhhhhcCCcccchHHHHHHHhcCCc
Q 022248          204 LCSVKDVD--MTLQEVRRVLKP---GGIYLFVEHVAAKDGTF--LKFWQNVVDP-LQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       204 l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      +|++++..  .++++++++|+|   ||++++.+.........  .......+.. +........++.++|.++|+++||+
T Consensus       261 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~  340 (358)
T 1zg3_A          261 LHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS  340 (358)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence            99998876  999999999999   99999998765433211  0111111111 1112234567889999999999999


Q ss_pred             EEEEeee
Q 022248          276 SVELGNA  282 (300)
Q Consensus       276 ~v~~~~~  282 (300)
                      .+++...
T Consensus       341 ~~~~~~~  347 (358)
T 1zg3_A          341 SYKITPI  347 (358)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEec
Confidence            9988763

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.72  E-value=1.6e-16  Score=125.60  Aligned_cols=123  Identities=17%  Similarity=0.136  Sum_probs=99.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++..  +++|+|+++.+++.           ..+++++++|+.+ ++++++||+|+++..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~   87 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-----------HRGGNLVRADLLC-SINQESVDVVVFNPP   87 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-----------CSSSCEEECSTTT-TBCGGGCSEEEECCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-----------ccCCeEEECChhh-hcccCCCCEEEECCC
Confidence            467799999999999999998754  99999999999987           1478999999987 566689999999887


Q ss_pred             ccCcccH---------HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          204 LCSVKDV---------DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       204 l~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      +++.++.         ...+.++.+.| |||.+++......                         ..+++.++++++||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-------------------------~~~~l~~~l~~~gf  141 (170)
T 3q87_B           88 YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN-------------------------RPKEVLARLEERGY  141 (170)
T ss_dssp             CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-------------------------CHHHHHHHHHHTTC
T ss_pred             CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC-------------------------CHHHHHHHHHHCCC
Confidence            7765433         56789999999 9999999874321                         12478899999999


Q ss_pred             cEEEEeeeccCC
Q 022248          275 SSVELGNAFLSN  286 (300)
Q Consensus       275 ~~v~~~~~~~~~  286 (300)
                      +.+.+......+
T Consensus       142 ~~~~~~~~~~~~  153 (170)
T 3q87_B          142 GTRILKVRKILG  153 (170)
T ss_dssp             EEEEEEEEECSS
T ss_pred             cEEEEEeeccCC
Confidence            988887665543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.71  E-value=4e-16  Score=124.28  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=101.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.++++++..++  +++.++.+|+.+ +++++.||+|++..+
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI--KNCQIIKGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC--CSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC--CcEEEEECCccc-cccCCCCcEEEECCc
Confidence            4678999999999999999987 778999999999999999999988886  479999999877 666689999999887


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                          .+...+++++.++  |||.+++.......                         ..++.+.++++||++..+
T Consensus       110 ----~~~~~~l~~~~~~--~gG~l~~~~~~~~~-------------------------~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          110 ----KNIEKIIEILDKK--KINHIVANTIVLEN-------------------------AAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             ----SCHHHHHHHHHHT--TCCEEEEEESCHHH-------------------------HHHHHHHHHHTTCEEEEE
T ss_pred             ----ccHHHHHHHHhhC--CCCEEEEEeccccc-------------------------HHHHHHHHHHcCCeEEEE
Confidence                6778889999998  99999998743210                         126778899999875544

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.71  E-value=1.2e-16  Score=132.56  Aligned_cols=135  Identities=17%  Similarity=0.171  Sum_probs=105.0

Q ss_pred             HhhcCCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccE
Q 022248          120 DNLRGKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDA  197 (300)
Q Consensus       120 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~  197 (300)
                      .....++.+|||+||| +|.++..+++..+.+++|+|+++.+++.|++++...++   +++++.+|+..+ ++++++||+
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEECSSCSSTTTCCSCEEE
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeCCchhhhhcccCceeE
Confidence            3444678999999999 99999999875477999999999999999999988875   789999997543 455689999


Q ss_pred             EEEcccccCccc-------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCC
Q 022248          198 VVGTLVLCSVKD-------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDG  258 (300)
Q Consensus       198 v~~~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (300)
                      |+++...++..+                   ...+++++.++|||||++++......                       
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------  183 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-----------------------  183 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-----------------------
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-----------------------
Confidence            998755443322                   47789999999999999999753221                       


Q ss_pred             cccchHHHHHHHhcCCcEEEEee
Q 022248          259 CHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       259 ~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                       ...+++.+.++++||+...+..
T Consensus       184 -~~~~~~~~~l~~~g~~~~~~~~  205 (230)
T 3evz_A          184 -KLLNVIKERGIKLGYSVKDIKF  205 (230)
T ss_dssp             -HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             -hHHHHHHHHHHHcCCceEEEEe
Confidence             0113778899999998666643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.71  E-value=7.2e-17  Score=143.31  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=109.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++++...++   +++++.+|+.+.+.++++||+|+++..
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~---~v~~~~~D~~~~~~~~~~fD~Ii~npp  307 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL---KAQALHSDVDEALTEEARFDIIVTNPP  307 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTSCTTCCEEEEEECCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEcchhhccccCCCeEEEEECCc
Confidence            36789999999999999999876 67999999999999999999988875   489999999988776789999999988


Q ss_pred             ccC-----cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          204 LCS-----VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       204 l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      +++     ..+...+++++.++|||||+++++......   ...++...+.              ++..+ ++.||++++
T Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~---~~~~l~~~f~--------------~v~~l-~~~gF~Vl~  369 (381)
T 3dmg_A          308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK---YEPLLEEKFG--------------AFQTL-KVAEYKVLF  369 (381)
T ss_dssp             CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC---HHHHHHHHHS--------------CCEEE-EESSSEEEE
T ss_pred             hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC---hHHHHHHhhc--------------cEEEE-eCCCEEEEE
Confidence            887     456778999999999999999998754332   3333333322              12222 678999888


Q ss_pred             Eeeecc
Q 022248          279 LGNAFL  284 (300)
Q Consensus       279 ~~~~~~  284 (300)
                      ......
T Consensus       370 a~~~~~  375 (381)
T 3dmg_A          370 AEKRGR  375 (381)
T ss_dssp             EECC--
T ss_pred             EEEecc
Confidence            775543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.71  E-value=7.4e-17  Score=135.37  Aligned_cols=132  Identities=17%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---CCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~  200 (300)
                      ++.+|||||||+|..+..++. .++.+|+++|+++.+++.|+++++..++.  +++++.+|+++++..   +++||+|++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~--~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK--GARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--ceEEEECcHHHhhcccccCCCceEEEE
Confidence            578999999999999999886 46789999999999999999999998874  799999999887643   479999998


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ..    +.+...+++.+.++|||||++++.......     ..                  ..++.+.++..||+.+++.
T Consensus       158 ~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~-----~e------------------~~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          158 RA----VAPLCVLSELLLPFLEVGGAAVAMKGPRVE-----EE------------------LAPLPPALERLGGRLGEVL  210 (249)
T ss_dssp             ES----SCCHHHHHHHHGGGEEEEEEEEEEECSCCH-----HH------------------HTTHHHHHHHHTEEEEEEE
T ss_pred             CC----cCCHHHHHHHHHHHcCCCeEEEEEeCCCcH-----HH------------------HHHHHHHHHHcCCeEEEEE
Confidence            64    356788999999999999999986622110     00                  1266778888999988887


Q ss_pred             eeccC
Q 022248          281 NAFLS  285 (300)
Q Consensus       281 ~~~~~  285 (300)
                      .....
T Consensus       211 ~~~~p  215 (249)
T 3g89_A          211 ALQLP  215 (249)
T ss_dssp             EEECT
T ss_pred             EeeCC
Confidence            66554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.71  E-value=1.4e-16  Score=126.54  Aligned_cols=126  Identities=10%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++. ++.+++++|+++.+++.|++++...++. .++ ++.+|... ++..+++||+|++.
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHhhhhccCCCCCEEEEC
Confidence            46779999999999999999875 4789999999999999999999888764 478 88888743 44333889999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      .++++    ..+++++.++|||||++++.......                         ...+.+.+++.|++...+.
T Consensus       102 ~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~  151 (178)
T 3hm2_A          102 GGLTA----PGVFAAAWKRLPVGGRLVANAVTVES-------------------------EQMLWALRKQFGGTISSFA  151 (178)
T ss_dssp             C-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH-------------------------HHHHHHHHHHHCCEEEEEE
T ss_pred             CcccH----HHHHHHHHHhcCCCCEEEEEeecccc-------------------------HHHHHHHHHHcCCeeEEEE
Confidence            98887    56789999999999999997743211                         1256677788888866654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.70  E-value=3.3e-17  Score=144.04  Aligned_cols=130  Identities=19%  Similarity=0.204  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHH-------HHcCCCCC
Q 022248          106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAA-------VAAGLPLT  176 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~-------~~~~~~~~  176 (300)
                      .|.+.....+..+++.+. .++.+|||||||+|.++..++...+. +++|||+++.+++.|++.+       +..++...
T Consensus       153 vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~  232 (438)
T 3uwp_A          153 VYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA  232 (438)
T ss_dssp             GGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred             ccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            455555566777777665 57889999999999999999864444 5999999999999998754       33455335


Q ss_pred             CEEEEecccCcCCCCC--CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          177 NFKFLQAVGEAIPVSD--ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       177 ~~~~~~~d~~~~~~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      +++|+++|+.++++.+  ..||+|+++..++ .++....|.++.++|||||+|++.+.....
T Consensus       233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          233 EYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             EEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             CeEEEECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            8999999999988754  4799999977653 578888999999999999999998765543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.70  E-value=1.9e-16  Score=149.13  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=93.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcC----CCCCCEEEEecccCcCCCCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAG----LPLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      .++.+|||||||+|.++..+++..  ..+|+|+|+++.+++.|++++....    ....+++|+++|+..+++.+++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            367899999999999999998754  2699999999999999998776431    1124899999999999998899999


Q ss_pred             EEEcccccCcccHH--HHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTLVLCSVKDVD--MTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++..+++|+++..  .+++++.++|||| .+++.+++.
T Consensus       800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            99999999998765  5899999999999 777777544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.70  E-value=5.3e-17  Score=133.56  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHH----HcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAV----AAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.+.+.++    ..++  +++.++++|++++++.++. |.|
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~--~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL--PNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC--TTEEEEECCSTTCCSCCCE-EEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC--CceEEEecchhhCCCCCCC-CEE
Confidence            46789999999999999999874 47899999999998886544332    2343  4899999999999988777 877


Q ss_pred             EEcc---cc--cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhh-cCCcccchHHHHHHHhc
Q 022248          199 VGTL---VL--CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIV-SDGCHLTRQTGNNISEA  272 (300)
Q Consensus       199 ~~~~---~l--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~a  272 (300)
                      ....   .+  ++++++..+++++.++|||||++++...........        ....... ....+..+++.++++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~a  174 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSV--------PEVGEHPEPTPDSADEWLAPRYAEA  174 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC--------GGGTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccc--------cccccCCccchHHHHHHHHHHHHHc
Confidence            7433   22  255666889999999999999999954322111000        0000000 00011234588899999


Q ss_pred             CCcEEEEeee
Q 022248          273 GFSSVELGNA  282 (300)
Q Consensus       273 Gf~~v~~~~~  282 (300)
                      ||++++++..
T Consensus       175 Gf~i~~~~~~  184 (218)
T 3mq2_A          175 GWKLADCRYL  184 (218)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCCceeeecc
Confidence            9999888754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.70  E-value=2.2e-16  Score=126.95  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++...++.++.+|+... ++++.||+|++...
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~  128 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPP  128 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCEEEEEECCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCCceEEEECCC
Confidence            36789999999999999999876 77999999999999999999988776411399999998773 44678999999888


Q ss_pred             ccC-cccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          204 LCS-VKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       204 l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +++ ..+...+++++.++|+|||.+++..+..
T Consensus       129 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             STTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            776 4567789999999999999999988543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.70  E-value=3.5e-16  Score=133.42  Aligned_cols=140  Identities=20%  Similarity=0.250  Sum_probs=108.2

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ....+++.+..++.+|||+|||+|.++..++. .++.+++++|+|+.+++.|+++++..++.  ++.++.+|+... +++
T Consensus        98 l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~v~~~~~d~~~~-~~~  174 (276)
T 2b3t_A           98 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK--NIHILQSDWFSA-LAG  174 (276)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCSTTGG-GTT
T ss_pred             HHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEcchhhh-ccc
Confidence            33444444434677999999999999999986 45779999999999999999999888764  799999998764 346


Q ss_pred             CcccEEEEcc-------------cccCc------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          193 ASVDAVVGTL-------------VLCSV------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       193 ~~~D~v~~~~-------------~l~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      ++||+|+++.             ++++.            .+...+++++.++|+|||++++...               
T Consensus       175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---------------  239 (276)
T 2b3t_A          175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---------------  239 (276)
T ss_dssp             CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---------------
T ss_pred             CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------------
Confidence            7899999973             23222            2446789999999999999999631               


Q ss_pred             hhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                                 ....+++.++++++||+.+++...
T Consensus       240 -----------~~~~~~~~~~l~~~Gf~~v~~~~d  263 (276)
T 2b3t_A          240 -----------WQQGEAVRQAFILAGYHDVETCRD  263 (276)
T ss_dssp             -----------SSCHHHHHHHHHHTTCTTCCEEEC
T ss_pred             -----------chHHHHHHHHHHHCCCcEEEEEec
Confidence                       112347889999999997776543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.70  E-value=1.5e-16  Score=131.05  Aligned_cols=137  Identities=12%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---CCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++  .+..+|+|+|+++.|++.++++++..    .++..+.+|...   .++..+.+|+|
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~----~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR----RNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----cCeeEEEEeccCccccccccceEEEE
Confidence            7899999999999999999997  36679999999999999998876543    478888888754   45667899999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++..  .+..+...++.++.+.|||||+++++......+.     .    ....       ...++..+.|+++||+.++
T Consensus       152 f~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~-----~----~p~~-------~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          152 YADV--AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDV-----T----TEPS-------EVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             EECC--CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHH-----H----TCCC-------HHHHHHHHHHHHTTCCEEE
T ss_pred             EEec--cCChhHHHHHHHHHHhccCCCEEEEEEecccCCC-----C----CChH-------HHHHHHHHHHHHCCCEEEE
Confidence            8743  3445777899999999999999999763322110     0    0000       0012445678899999887


Q ss_pred             Eeee
Q 022248          279 LGNA  282 (300)
Q Consensus       279 ~~~~  282 (300)
                      ....
T Consensus       214 ~i~L  217 (233)
T 4df3_A          214 VVHL  217 (233)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            7643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.70  E-value=3.3e-16  Score=132.36  Aligned_cols=131  Identities=14%  Similarity=0.197  Sum_probs=103.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~  202 (300)
                      ++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. +++.++.+|+.+++  +++++||+|+++-
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            67899999999999999998765559999999999999999999988875 57999999998875  5578999999964


Q ss_pred             cccCc--------------------ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccc
Q 022248          203 VLCSV--------------------KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLT  262 (300)
Q Consensus       203 ~l~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (300)
                      .....                    .+...+++.+.++|||||+++++...  .                        ..
T Consensus       128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~------------------------~~  181 (259)
T 3lpm_A          128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP--E------------------------RL  181 (259)
T ss_dssp             CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT--T------------------------TH
T ss_pred             CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH--H------------------------HH
Confidence            33222                    23457899999999999999996521  1                        11


Q ss_pred             hHHHHHHHhcCCcEEEEeee
Q 022248          263 RQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~~~~  282 (300)
                      .++.+.+++.||....+...
T Consensus       182 ~~~~~~l~~~~~~~~~~~~v  201 (259)
T 3lpm_A          182 LDIIDIMRKYRLEPKRIQFV  201 (259)
T ss_dssp             HHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHCCCceEEEEEe
Confidence            26667788888887766544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.70  E-value=8e-17  Score=132.49  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=90.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++ .++..++|+|+++.+++.|+++++..++.  ++.++.+|+..+ +  +++++||.|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~--nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS--NLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS--SEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHcCCCChheEE
Confidence            4678999999999999999987 46779999999999999999999888874  899999999874 3  6789999999


Q ss_pred             EcccccCcccH--------HHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.+...+....        ..+++++.++|||||++++.+.
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            98654433221        2589999999999999999873

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.69  E-value=3.6e-16  Score=131.72  Aligned_cols=128  Identities=23%  Similarity=0.240  Sum_probs=103.7

Q ss_pred             hcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++.   +.+..+|+... +++++||+|+++
T Consensus       117 ~~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          117 HLRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             hcCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChhhc-CcCCCCCEEEEC
Confidence            3457789999999999999998875 449999999999999999999887753   88899888663 345789999987


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ...+   ....++.++.++|||||++++++....                         ..+++.++++++||++++...
T Consensus       192 ~~~~---~~~~~l~~~~~~LkpgG~lils~~~~~-------------------------~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          192 LYAE---LHAALAPRYREALVPGGRALLTGILKD-------------------------RAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             CCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHHTTCEEEEEEE
T ss_pred             CcHH---HHHHHHHHHHHHcCCCCEEEEEeeccC-------------------------CHHHHHHHHHHCCCEEEEEec
Confidence            5443   346789999999999999999874321                         134888999999999988765


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       244 ~  244 (254)
T 2nxc_A          244 E  244 (254)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.69  E-value=4.1e-16  Score=125.11  Aligned_cols=122  Identities=19%  Similarity=0.268  Sum_probs=99.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-CcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++. +++.++.+|+.. ++++ +.||+|++..
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecCHHH-hcccCCCCCEEEECC
Confidence            467899999999999999998755 79999999999999999999888763 489999999876 2222 5899999987


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      .++   +...+++++.++|+|||.+++......                         ...++.+.+++.||..
T Consensus       109 ~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~-------------------------~~~~~~~~l~~~g~~~  154 (192)
T 1l3i_A          109 SGG---ELQEILRIIKDKLKPGGRIIVTAILLE-------------------------TKFEAMECLRDLGFDV  154 (192)
T ss_dssp             CTT---CHHHHHHHHHHTEEEEEEEEEEECBHH-------------------------HHHHHHHHHHHTTCCC
T ss_pred             chH---HHHHHHHHHHHhcCCCcEEEEEecCcc-------------------------hHHHHHHHHHHCCCce
Confidence            765   457889999999999999999874311                         0136778899999953

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.69  E-value=1.5e-16  Score=139.65  Aligned_cols=103  Identities=24%  Similarity=0.268  Sum_probs=90.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-  202 (300)
                      .++.+|||||||+|.++..+++....+++|+|+++ +++.|+++++..++. ++++++.+|++++++++++||+|++.. 
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            46789999999999999999876556999999996 999999999988874 589999999999988888999999876 


Q ss_pred             --cccCcccHHHHHHHHHHcccCCcEEE
Q 022248          203 --VLCSVKDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       203 --~l~~~~~~~~~l~~~~~~LkpgG~l~  228 (300)
                        .+.+..+...++.++.++|||||+++
T Consensus       141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          141 GYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence              45555677889999999999999998

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.69  E-value=5.2e-16  Score=128.77  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----CCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++++..    +++.++.+|+..    .++. +.||+|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-~~~D~v  147 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIV-EKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-ccEEEE
Confidence            46789999999999999999875 3479999999999999999886543    489999999987    6666 789999


Q ss_pred             EEcccccCcccH---HHHHHHHHHcccCCcEEEEEecccC-CCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          199 VGTLVLCSVKDV---DMTLQEVRRVLKPGGIYLFVEHVAA-KDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       199 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      +.     +++++   ..+++++.++|||||++++...... .......   .             ...+++. +|+++||
T Consensus       148 ~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~-------------~~~~~l~-~l~~~Gf  205 (230)
T 1fbn_A          148 YE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK---E-------------IFKEQKE-ILEAGGF  205 (230)
T ss_dssp             EE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH---H-------------HHHHHHH-HHHHHTE
T ss_pred             EE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHH---H-------------hhHHHHH-HHHHCCC
Confidence            93     34444   6779999999999999999721111 1100000   0             0124777 8999999


Q ss_pred             cEEEEeee
Q 022248          275 SSVELGNA  282 (300)
Q Consensus       275 ~~v~~~~~  282 (300)
                      +.++....
T Consensus       206 ~~~~~~~~  213 (230)
T 1fbn_A          206 KIVDEVDI  213 (230)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcc
Confidence            98887654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.68  E-value=2.1e-16  Score=139.17  Aligned_cols=105  Identities=21%  Similarity=0.275  Sum_probs=92.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++++..++. .+++++.+|++++++++++||+|++..+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCC-CcEEEEECcHHHccCCCCceEEEEEccc
Confidence            4678999999999999999998755699999999 5999999999988875 5699999999999988899999999765


Q ss_pred             c---cCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          204 L---CSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       204 l---~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      .   .+..+...++.++.++|||||+++..
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            3   34478889999999999999999753

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.68  E-value=1.7e-16  Score=129.04  Aligned_cols=109  Identities=8%  Similarity=0.023  Sum_probs=89.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--CCCc-ccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDAS-VDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D~v~~~  201 (300)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++..++++++.+|+.++..  .+++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            568999999999999998776555699999999999999999998887622489999999877532  3578 9999998


Q ss_pred             ccccCcccHHHHHHHH--HHcccCCcEEEEEeccc
Q 022248          202 LVLCSVKDVDMTLQEV--RRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~  234 (300)
                      ..++ ..+...+++.+  .++|+|||++++.....
T Consensus       133 ~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            7744 56677888888  67899999999977543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.68  E-value=1.1e-15  Score=125.07  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=79.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+.+..+..    .++.++.+|+...    ++. ++||+|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~-~~fD~V  130 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIV-EKVDLI  130 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTC-CCEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccc-cceeEE
Confidence            467899999999999999988743 469999999999887776665543    3788999998763    444 789999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++.. ..+ .+...+++++.++|||||++++..
T Consensus       131 ~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          131 YQDI-AQK-NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EECC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9973 221 233456899999999999999985

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.67  E-value=1.2e-15  Score=130.09  Aligned_cols=132  Identities=13%  Similarity=0.090  Sum_probs=105.1

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++++..++. .+++++++|+.+++. ++.||+|++..
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~-~~v~~~~~D~~~~~~-~~~fD~Vi~~~  200 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG-ENIADRILMGY  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECCHHHhcc-cCCccEEEECC
Confidence            3468899999999999999998754447999999999999999999988875 469999999998876 68999999854


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      .    .+...++.++.++|||||++++.+.......                   .....+++.+.++++||+...+
T Consensus       201 p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          201 V----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-------------------PREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             C----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-------------------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred             c----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-------------------cccHHHHHHHHHHHcCCeeEEe
Confidence            3    3345678999999999999999886542100                   0112347788999999997653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.67  E-value=2.8e-16  Score=133.93  Aligned_cols=125  Identities=20%  Similarity=0.229  Sum_probs=103.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|+++++.. +.  ++++++.+|+.+ +++++.||+|++
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--GNVRTSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--TTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC--CcEEEEECchhc-cCcCCCccEEEE
Confidence            46789999999999999999874  4679999999999999999999877 64  489999999987 566788999998


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                           +++++..+++++.++|||||++++.+....                         ..+++.+.++++||+.+++.
T Consensus       186 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-------------------------~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          186 -----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-------------------------QSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             -----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-------------------------HHHHHHHHSGGGTEEEEEEE
T ss_pred             -----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-------------------------HHHHHHHHHHHCCCeEEEEE
Confidence                 456777899999999999999999884321                         01256677888999988776


Q ss_pred             e
Q 022248          281 N  281 (300)
Q Consensus       281 ~  281 (300)
                      .
T Consensus       236 ~  236 (275)
T 1yb2_A          236 E  236 (275)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.67  E-value=9e-16  Score=126.55  Aligned_cols=118  Identities=18%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~  189 (300)
                      ..+..++..  .++.+|||||||+|..+..+++.  .+.+++++|+++.+++.|+++++..++. ++++++.+|+.+ ++
T Consensus        48 ~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           48 QIMDAVIRE--YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGASQDLIP  124 (221)
T ss_dssp             HHHHHHHHH--HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGG
T ss_pred             HHHHHHHHh--cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCHHHHHH
Confidence            344444433  26789999999999999999873  3679999999999999999999988874 579999999855 33


Q ss_pred             CC-----CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          190 VS-----DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       190 ~~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ..     .++||+|++....++..+....+..+ ++|||||++++.+...
T Consensus       125 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             GTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            22     26899999988777776666778888 9999999999876543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.67  E-value=7.6e-16  Score=125.84  Aligned_cols=101  Identities=22%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++++...++.  +++++.+|+......+++||+|++..+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~D~i~~~~~  152 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH--NVSTRHGDGWQGWQARAPFDAIIVTAA  152 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC--ceEEEECCcccCCccCCCccEEEEccc
Confidence            46789999999999999999876 679999999999999999999888764  899999999887666789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++++++      ++.++|||||++++....
T Consensus       153 ~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          153 PPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             hhhhhH------HHHHhcccCcEEEEEEcC
Confidence            999875      689999999999998754

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.66  E-value=3e-15  Score=121.91  Aligned_cols=100  Identities=14%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..++.. ++.+++++|+++.+++.+++++...++.  ++.++.+|+...+ +.++||+|++.. 
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~-~~~~~D~i~~~~-  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFP-SEPPFDGVISRA-  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSC-CCSCEEEEECSC-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEecchhhCC-ccCCcCEEEEec-
Confidence            4789999999999999999874 5789999999999999999999888764  6999999998876 457899999754 


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         +.+...+++++.++|+|||++++..
T Consensus       141 ---~~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          141 ---FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ---SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ---cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence               3567889999999999999999974

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.66  E-value=1.7e-15  Score=130.81  Aligned_cols=140  Identities=23%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcCCC--CCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPV--SDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~~~--~~~~~D~v  198 (300)
                      .++.+|||||||+|.++..+++. ...+++++|+++.+++.|++.+..  .+...++++++.+|+...+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            46789999999999999999875 356999999999999999998742  12223589999999977643  46899999


Q ss_pred             EEcccccCcccH----HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCC
Q 022248          199 VGTLVLCSVKDV----DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGF  274 (300)
Q Consensus       199 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  274 (300)
                      ++.......+..    ..+++++.++|||||++++........                     .....++.+.|+++||
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---------------------~~~~~~~~~~l~~~GF  232 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD---------------------LELIEKMSRFIRETGF  232 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC---------------------HHHHHHHHHHHHHHTC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc---------------------hHHHHHHHHHHHhCCC
Confidence            997655443322    578999999999999999975322110                     0112478889999999


Q ss_pred             cEEEEeeecc
Q 022248          275 SSVELGNAFL  284 (300)
Q Consensus       275 ~~v~~~~~~~  284 (300)
                      ..+......+
T Consensus       233 ~~v~~~~~~v  242 (304)
T 3bwc_A          233 ASVQYALMHV  242 (304)
T ss_dssp             SEEEEEECCC
T ss_pred             CcEEEEEeec
Confidence            9887765443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.66  E-value=1.5e-16  Score=126.47  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---CCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~  200 (300)
                      .++.+|||||||.               +++|+|+.|++.|+++..      .++.++++|++.+++   ++++||+|++
T Consensus        11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~------~~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG------NEGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT------TTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc------cCcEEEEechhcCccccCCCCCEeEEEE
Confidence            5788999999986               239999999999998752      258899999999887   7899999999


Q ss_pred             cccccCc-ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          201 TLVLCSV-KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       201 ~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      .++++|+ ++...++++++|+|||||++++..+.......                ....++.+++.++|+++|| +. +
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~aGf-i~-~  131 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN----------------NSKVKTASKLCSALTLSGL-VE-V  131 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS----------------SSSSCCHHHHHHHHHHTTC-EE-E
T ss_pred             CChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc----------------ccccCCHHHHHHHHHHCCC-cE-e
Confidence            9999999 89999999999999999999996643221110                1122456799999999999 44 4


Q ss_pred             ee
Q 022248          280 GN  281 (300)
Q Consensus       280 ~~  281 (300)
                      ..
T Consensus       132 ~~  133 (176)
T 2ld4_A          132 KE  133 (176)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.66  E-value=1e-16  Score=126.32  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|||+|||+|.++..++. .+..+|+++|+++.|++.+++++...|.. .++.+  .|.... .+.++||+|+...
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-~~v~~--~d~~~~-~~~~~~DvVLa~k  123 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKYRF--LNKESD-VYKGTYDVVFLLK  123 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-SEEEE--ECCHHH-HTTSEEEEEEEET
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ccEEE--eccccc-CCCCCcChhhHhh
Confidence            4678999999999999999976 46779999999999999999999998874 25666  555443 3568899999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++|++++.+..+.++.+.|+|||+++-..
T Consensus       124 ~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          124 MLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             CHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             HHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            99999777778889999999999888766

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.66  E-value=4.2e-16  Score=138.56  Aligned_cols=105  Identities=23%  Similarity=0.293  Sum_probs=91.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++..++. .+++++.+|+++++++ ++||+|++..+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~Iv~~~~  138 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDISLP-EKVDVIISEWM  138 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcCcC-CcceEEEEcCh
Confidence            5778999999999999999988644599999999 9999999999998885 5799999999998876 89999999665


Q ss_pred             ccCc---ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSV---KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .+.+   .+...++.++.++|||||++++..
T Consensus       139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          139 GYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            5554   457789999999999999998754

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.66  E-value=1.3e-15  Score=128.32  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|+++++.. +.  +++.++.+|+.+.+++++.||+|++
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCCCCCCcCEEEE
Confidence            46789999999999999999875  3679999999999999999998877 63  5899999999988788889999998


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      .     .++...+++++.++|+|||++++..+...       .                  ..++.+.|+++||..+++.
T Consensus       173 ~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-------~------------------~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          173 D-----LMEPWKVLEKAALALKPDRFLVAYLPNIT-------Q------------------VLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             E-----SSCGGGGHHHHHHHEEEEEEEEEEESCHH-------H------------------HHHHHHHHTTTTEEEEEEE
T ss_pred             C-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH-------H------------------HHHHHHHHHHCCCceEEEE
Confidence            3     45667889999999999999999884321       0                  1256677788999977765


Q ss_pred             e
Q 022248          281 N  281 (300)
Q Consensus       281 ~  281 (300)
                      .
T Consensus       223 ~  223 (258)
T 2pwy_A          223 E  223 (258)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.65  E-value=8.2e-16  Score=125.02  Aligned_cols=106  Identities=8%  Similarity=0.007  Sum_probs=88.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|||+|||+|.++..++.....+|+++|+++.+++.|+++++..++  ++++++++|+.+ ++..++.||+|++...
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~fD~V~~~~p  131 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPP  131 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence            5689999999999999987765556999999999999999999998886  489999999877 5666679999999766


Q ss_pred             ccCcccHHHHHHHHHH--cccCCcEEEEEecc
Q 022248          204 LCSVKDVDMTLQEVRR--VLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~  233 (300)
                      ++ ..+...+++.+.+  +|+|||++++....
T Consensus       132 ~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          132 FR-RGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            33 4566778888865  59999999987753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.65  E-value=3.2e-16  Score=132.00  Aligned_cols=152  Identities=11%  Similarity=0.126  Sum_probs=102.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCC---CCcccE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVS---DASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~~~D~  197 (300)
                      ++.+|||+|||+|.++..++.. ++.+++|+|+++.+++.|+++++..++. .+++++.+|+.+.   +++   +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            5679999999999999888764 4679999999999999999999988874 4699999997652   344   268999


Q ss_pred             EEEcccccCcc---------------cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhh--cCCcc
Q 022248          198 VVGTLVLCSVK---------------DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIV--SDGCH  260 (300)
Q Consensus       198 v~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  260 (300)
                      |+++-..+...               ....++.++.++|||||.+.+++.       ................  .....
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~  216 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR-------IIHDSLQLKKRLRWYSCMLGKKC  216 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHHHH-------HHHHHHHHGGGBSCEEEEESSTT
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH-------HHHHHHhcccceEEEEECCCChh
Confidence            99974443322               112457889999999999887652       1111111222111111  11112


Q ss_pred             cchHHHHHHHhcCCcEEEEeeecc
Q 022248          261 LTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       261 ~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      ..+++.++|+++||+.+++.....
T Consensus       217 ~~~~~~~~l~~~Gf~~v~~~~~~~  240 (254)
T 2h00_A          217 SLAPLKEELRIQGVPKVTYTEFCQ  240 (254)
T ss_dssp             SHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCceEEEEEec
Confidence            236889999999999988775543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.65  E-value=2.8e-15  Score=124.58  Aligned_cols=137  Identities=14%  Similarity=0.155  Sum_probs=98.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---CCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.+.+.++..    .++.++.+|+..   +++.+++||+|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCcEEEE
Confidence            46789999999999999999875  4579999999999888888777664    489999999987   45557899999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++...  .......++.++.++|||||++++.........         .......     + .++ .++|+++||+.++
T Consensus       152 ~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~~~-----~-~~~-~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          152 FADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDS---------TASAEAV-----F-ASE-VKKMQQENMKPQE  213 (233)
T ss_dssp             EECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCS---------SSCHHHH-----H-HHH-HHTTGGGTEEEEE
T ss_pred             EEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEccccccc---------CCCHHHH-----H-HHH-HHHHHHCCCceEE
Confidence            99654  222234568899999999999999653210000         0000000     0 123 4788999999888


Q ss_pred             Eeee
Q 022248          279 LGNA  282 (300)
Q Consensus       279 ~~~~  282 (300)
                      ....
T Consensus       214 ~~~~  217 (233)
T 2ipx_A          214 QLTL  217 (233)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            6543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.65  E-value=7.4e-16  Score=128.05  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-  189 (300)
                      .++..++..  .++.+|||||||+|.++..+++. ++.+++++|+++.+++.|+++++..++. ++++++.+|+.+. + 
T Consensus        61 ~~l~~~~~~--~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~  137 (232)
T 3ntv_A           61 DLIKQLIRM--NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNALEQFEN  137 (232)
T ss_dssp             HHHHHHHHH--HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCHHH
T ss_pred             HHHHHHHhh--cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHh
Confidence            344444433  26789999999999999999873 4789999999999999999999988874 5899999999764 4 


Q ss_pred             CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..+++||+|++...   ..+...+++++.++|||||++++-+.
T Consensus       138 ~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          138 VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            34689999997643   45667789999999999999988553

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=3.2e-15  Score=125.48  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCC--CCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVS--DASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~--~~~~D~v~  199 (300)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|+++++..++. ++++++.+|+.+ ++..  .++||+|+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            6789999999999999999874 2 679999999999999999999988875 589999999866 3332  34899999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +..   ...+...+++++.++|||||++++.+..
T Consensus       142 ~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          142 IDA---DKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ECS---CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ECC---chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            865   3456677899999999999999987643

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.65  E-value=5.5e-16  Score=135.38  Aligned_cols=103  Identities=24%  Similarity=0.323  Sum_probs=89.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc-
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV-  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-  203 (300)
                      ++.+|||||||+|.++..+++....+++|+|++ .+++.|+++++..++. ++++++.+|++++++++++||+|++... 
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-CCEEEEECchhhccCCCCcccEEEEeCch
Confidence            678999999999999999987655699999999 6999999999988875 5799999999999888789999998754 


Q ss_pred             --ccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          204 --LCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       204 --l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                        +.+......++.++.++|||||+++.
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence              34445678899999999999999974

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.65  E-value=4.6e-16  Score=123.66  Aligned_cols=109  Identities=16%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|+++++..++. +++.++.+|+.+ ++..++.||+|++..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            367899999999999999998775579999999999999999999887764 479999999877 344446799999976


Q ss_pred             cccCcccHHHHHHHHH--HcccCCcEEEEEeccc
Q 022248          203 VLCSVKDVDMTLQEVR--RVLKPGGIYLFVEHVA  234 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~  234 (300)
                      ..+ .......++.+.  ++|+|||++++.....
T Consensus       109 ~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          109 PYA-KETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             SSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            542 234556677776  9999999999987543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.64  E-value=1.9e-15  Score=127.28  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=104.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|+++++..++. .+++++.+|+.+. +++++||+|++.
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~D~v~~~  169 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIKLKDIYEG-IEEENVDHVILD  169 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEECSCGGGC-CCCCSEEEEEEC
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEEECchhhc-cCCCCcCEEEEC
Confidence            46789999999999999999874  3789999999999999999999988874 4599999999854 667889999983


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC--CcEEEE
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG--FSSVEL  279 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG--f~~v~~  279 (300)
                           .++...+++++.++|+|||++++..+...                         ...++.+.++++|  |..+++
T Consensus       170 -----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-------------------------~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          170 -----LPQPERVVEHAAKALKPGGFFVAYTPCSN-------------------------QVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             -----SSCGGGGHHHHHHHEEEEEEEEEEESSHH-------------------------HHHHHHHHHHHTGGGBSCCEE
T ss_pred             -----CCCHHHHHHHHHHHcCCCCEEEEEECCHH-------------------------HHHHHHHHHHHcCCCccccEE
Confidence                 46667789999999999999999774221                         0126678888999  987776


Q ss_pred             eee
Q 022248          280 GNA  282 (300)
Q Consensus       280 ~~~  282 (300)
                      ...
T Consensus       220 ~e~  222 (255)
T 3mb5_A          220 INV  222 (255)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.64  E-value=1.2e-16  Score=130.63  Aligned_cols=132  Identities=17%  Similarity=0.092  Sum_probs=83.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-----CcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-----ASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~  197 (300)
                      .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.|++++...+.   +++++++|+.+ ++++     ++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~-~~~~~~~~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWAAADGIE-WLIERAERGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHH-HHHHHHHTTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEEEcchHh-hhhhhhhccCcccE
Confidence            46789999999999999999874 467999999999999999999877654   68889999877 4444     89999


Q ss_pred             EEEcccccCccc--------------------------HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhh
Q 022248          198 VVGTLVLCSVKD--------------------------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL  251 (300)
Q Consensus       198 v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  251 (300)
                      |+++...+...+                          ...+++++.++|||||++++.+....                
T Consensus       105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------  168 (215)
T 4dzr_A          105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN----------------  168 (215)
T ss_dssp             EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS----------------
T ss_pred             EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc----------------
Confidence            999644332211                          16778999999999999555553211                


Q ss_pred             hhhhcCCcccchHHHHHHH--hcCCcEEEEeeecc
Q 022248          252 QQIVSDGCHLTRQTGNNIS--EAGFSSVELGNAFL  284 (300)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~--~aGf~~v~~~~~~~  284 (300)
                               ..+++.++++  ++||..+++.....
T Consensus       169 ---------~~~~~~~~l~~~~~gf~~~~~~~~~~  194 (215)
T 4dzr_A          169 ---------QADEVARLFAPWRERGFRVRKVKDLR  194 (215)
T ss_dssp             ---------CHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred             ---------cHHHHHHHHHHhhcCCceEEEEEecC
Confidence                     1236677788  88998777665433

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.64  E-value=1.8e-15  Score=124.59  Aligned_cols=119  Identities=15%  Similarity=0.243  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  187 (300)
                      ...++..+..... .++.+|||||||+|..+..+++.  .+.+++++|+++.+++.|+++++..++..++++++.+|+.+
T Consensus        41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~  120 (221)
T 3dr5_A           41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD  120 (221)
T ss_dssp             HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence            3344444444332 12349999999999999999873  36899999999999999999999988743589999999866


Q ss_pred             C-C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          188 I-P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       188 ~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      . + +++++||+|++....   .+...+++++.++|||||++++.+.
T Consensus       121 ~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          121 VMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             HGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            4 2 346899999986533   4566789999999999999999543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.64  E-value=1.1e-15  Score=127.15  Aligned_cols=107  Identities=21%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH------cCCCCCCEEEEecccCc-CC--CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA------AGLPLTNFKFLQAVGEA-IP--VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~------~~~~~~~~~~~~~d~~~-~~--~~~~  193 (300)
                      .++.+|||||||+|.++..+++. ++..++|+|+++.+++.|+++++.      .++  .++.++.+|+.. ++  ++++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~--~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF--QNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC--TTEEEEECCTTTCHHHHCCTT
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC--CeEEEEECcHHHhhhhhCCCc
Confidence            46678999999999999999874 577999999999999999988764      233  589999999987 66  7789


Q ss_pred             cccEEEEcccccCccc--------HHHHHHHHHHcccCCcEEEEEec
Q 022248          194 SVDAVVGTLVLCSVKD--------VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +||.|++.+...+...        ...+++++.++|||||.|++...
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            9999997654333211        13689999999999999999763

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.63  E-value=3.2e-15  Score=122.58  Aligned_cols=130  Identities=11%  Similarity=0.010  Sum_probs=103.4

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .+.+++.+|||||||+|.++..++... ..+++++|+++.+++.|+++++..++. +++++..+|..+...+++.||+|+
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~~gD~l~~~~~~~~~D~Iv   95 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVRLANGLSAFEEADNIDTIT   95 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhccccccccCEEE
Confidence            334577899999999999999998753 568999999999999999999999985 579999999987665444799988


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      ...+.-  .-...++.+..+.|+++|+|++.....                           .+.+++.|.+.||.+++.
T Consensus        96 iaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~~---------------------------~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           96 ICGMGG--RLIADILNNDIDKLQHVKTLVLQPNNR---------------------------EDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             EEEECH--HHHHHHHHHTGGGGTTCCEEEEEESSC---------------------------HHHHHHHHHHTTEEEEEE
T ss_pred             EeCCch--HHHHHHHHHHHHHhCcCCEEEEECCCC---------------------------hHHHHHHHHHCCCEEEEE
Confidence            644322  234567888999999999999876321                           137788889999997766


Q ss_pred             e
Q 022248          280 G  280 (300)
Q Consensus       280 ~  280 (300)
                      .
T Consensus       147 ~  147 (230)
T 3lec_A          147 D  147 (230)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.63  E-value=1.3e-15  Score=121.84  Aligned_cols=108  Identities=11%  Similarity=0.089  Sum_probs=88.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. ++++++.+|+.+.    +..++.||+|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            67899999999999999888765679999999999999999999888763 4799999998763    223678999999


Q ss_pred             cccccCcccHHHHHHHH--HHcccCCcEEEEEeccc
Q 022248          201 TLVLCSVKDVDMTLQEV--RRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~  234 (300)
                      ....+ ..+....++.+  .++|+|||++++.....
T Consensus       123 ~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          123 DPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             CCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            87633 34566677777  89999999999977443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.63  E-value=3.8e-15  Score=123.73  Aligned_cols=116  Identities=15%  Similarity=0.171  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-
Q 022248          111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-  188 (300)
                      ....+..++..  .++.+|||+|||+|.++..+++. ++.+++++|+++.+++.|++++...++. .++.++.+|+... 
T Consensus        42 ~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~  118 (233)
T 2gpy_A           42 GMESLLHLLKM--AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDALQLG  118 (233)
T ss_dssp             HHHHHHHHHHH--HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCGGGSH
T ss_pred             HHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHH
Confidence            33444444433  36779999999999999999874 3679999999999999999999888874 4799999998774 


Q ss_pred             CCC--CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          189 PVS--DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       189 ~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +..  ++.||+|++....   .+...+++++.++|+|||++++.+.
T Consensus       119 ~~~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          119 EKLELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             HHHTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             HhcccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            332  5789999987664   3677889999999999999999754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.63  E-value=3e-15  Score=122.39  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=86.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~  201 (300)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|+++++..++. ++++++.+|+.+. +..++ ||+|++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            5679999999999999999874 2 679999999999999999999887764 5799999998664 54456 9999987


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..   ..+...+++++.++|||||++++.+.
T Consensus       134 ~~---~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          134 CD---VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             TT---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             CC---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            42   35678899999999999999998653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.63  E-value=3.7e-15  Score=131.18  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=94.2

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .++.+|||||||+|.++..+++....+|+|+|+++ +++.|+++++..++. ++++++.+|+++++++ +
T Consensus        39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~~~-~  115 (348)
T 2y1w_A           39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVSLP-E  115 (348)
T ss_dssp             HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCCS-S
T ss_pred             HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEEEcchhhCCCC-C
Confidence            344444443 47789999999999999999876566999999996 889999999888874 5899999999988765 6


Q ss_pred             cccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEe
Q 022248          194 SVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +||+|++...++++.  +....+.++.++|||||.+++..
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            899999998877763  45678889999999999998643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=1.7e-15  Score=127.23  Aligned_cols=115  Identities=11%  Similarity=0.006  Sum_probs=84.8

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      +...+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++....   .+..+...+.......+
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~~~~~~~  108 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRC---VTIDLLDITAEIPKELA  108 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSCCCGGGT
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcc---ceeeeeecccccccccC
Confidence            3344444444 56789999999999999999875 6699999999999999999864331   12333222220011125


Q ss_pred             CcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++||+|++..+++|+.  +...+++++.++| |||++++....
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            7899999999999874  4567899999999 99999998654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.62  E-value=1.2e-14  Score=119.80  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=94.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.+.+..+..    .++.++.+|+....   ...+.||+|
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccceEEE
Confidence            57899999999999999999873  4679999999999976665554443    48999999987642   124689999


Q ss_pred             EEcccccCcccHHHHH-HHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          199 VGTLVLCSVKDVDMTL-QEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++....   ++....+ ..+.+.|||||+|+++......+..        ..        .....++..+.|+++||+.+
T Consensus       151 ~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t--------~~--------~~e~~~~~~~~L~~~gf~~~  211 (232)
T 3id6_C          151 YVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT--------KD--------PKEIYKTEVEKLENSNFETI  211 (232)
T ss_dssp             EECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC---------------CC--------SSSSTTHHHHHHHHTTEEEE
T ss_pred             EecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccC--------CC--------HHHHHHHHHHHHHHCCCEEE
Confidence            987654   4555544 5566699999999998532211100        00        00111356677889999988


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      +....
T Consensus       212 ~~~~l  216 (232)
T 3id6_C          212 QIINL  216 (232)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            77643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.62  E-value=5e-15  Score=122.43  Aligned_cols=130  Identities=12%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .+.+++.+|||||||+|.++..++... ..+++++|+++.+++.|+++++..++. +++++..+|..+...+++.||+|+
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~~gD~l~~~~~~~~~D~Iv   95 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKGNGLAVIEKKDAIDTIV   95 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEecchhhccCccccccEEE
Confidence            334577899999999999999998753 558999999999999999999999985 579999999877654434699988


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      ...+.-  .-...++.+..+.|+++|+|++.....                           .+.+++.|.+.||.+++.
T Consensus        96 iagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~~~---------------------------~~~lr~~L~~~Gf~i~~E  146 (244)
T 3gnl_A           96 IAGMGG--TLIRTILEEGAAKLAGVTKLILQPNIA---------------------------AWQLREWSEQNNWLITSE  146 (244)
T ss_dssp             EEEECH--HHHHHHHHHTGGGGTTCCEEEEEESSC---------------------------HHHHHHHHHHHTEEEEEE
T ss_pred             EeCCch--HHHHHHHHHHHHHhCCCCEEEEEcCCC---------------------------hHHHHHHHHHCCCEEEEE
Confidence            643222  234567889999999999999876321                           137778888899997554


Q ss_pred             e
Q 022248          280 G  280 (300)
Q Consensus       280 ~  280 (300)
                      .
T Consensus       147 ~  147 (244)
T 3gnl_A          147 A  147 (244)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.62  E-value=2.3e-15  Score=134.76  Aligned_cols=119  Identities=14%  Similarity=0.204  Sum_probs=92.6

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHH-------HHHHHHcCCCCCCEEEEecc
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYA-------QTAAVAAGLPLTNFKFLQAV  184 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a-------~~~~~~~~~~~~~~~~~~~d  184 (300)
                      ....+++.+. .++.+|||||||+|.++..+++. +..+++|+|+++.+++.|       +++++..++...+++++.+|
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            4445555544 46789999999999999999874 445899999999999988       88888777433589999875


Q ss_pred             cCcC--CC--CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          185 GEAI--PV--SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       185 ~~~~--~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ....  ++  ..+.||+|+++..+ +.++....++++.++|||||++++.+..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f  361 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSL  361 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence            4422  22  24789999997766 3477888899999999999999997643

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.62  E-value=3.6e-15  Score=126.24  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CCCeEEEECCCCCh----hHHHhHhC-C----CceEEEEcCCHHHHHHHHHHHHH-----------------------cC
Q 022248          125 KAKKVLEIGIGTGP----NLKYYAAD-T----DVQVLGVDPNRKMEKYAQTAAVA-----------------------AG  172 (300)
Q Consensus       125 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~~~giD~s~~~~~~a~~~~~~-----------------------~~  172 (300)
                      ++.+|||+|||+|.    ++..+++. +    +.+++|+|+|+.|++.|++.+-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    44445542 2    46999999999999999986410                       00


Q ss_pred             -C--C---CCCEEEEecccCcCCCC-CCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEE
Q 022248          173 -L--P---LTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       173 -~--~---~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~  229 (300)
                       +  .   ..++.|.++|+.+.+++ .+.||+|+|.++++|+++.  ..+++++++.|+|||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence             0  0   02699999999887665 5789999999999999765  7899999999999999988

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.61  E-value=7.1e-15  Score=120.35  Aligned_cols=129  Identities=12%  Similarity=0.022  Sum_probs=100.7

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEE
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAV  198 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v  198 (300)
                      .+.+++.+|||||||+|.++..++.. +..+++++|+++.+++.|+++++..++. +++++..+|... ++. .+.||+|
T Consensus        11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~~~d~l~~l~~-~~~~D~I   88 (225)
T 3kr9_A           11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVRLANGLAAFEE-TDQVSVI   88 (225)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCG-GGCCCEE
T ss_pred             HhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECchhhhccc-CcCCCEE
Confidence            34457789999999999999999875 3568999999999999999999999985 579999999843 432 2269998


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      +...+--  .-...++.+..+.|+|+|+|++.....                           .+.+++.|.+.||.+++
T Consensus        89 viaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~~~---------------------------~~~vr~~L~~~Gf~i~~  139 (225)
T 3kr9_A           89 TIAGMGG--RLIARILEEGLGKLANVERLILQPNNR---------------------------EDDLRIWLQDHGFQIVA  139 (225)
T ss_dssp             EEEEECH--HHHHHHHHHTGGGCTTCCEEEEEESSC---------------------------HHHHHHHHHHTTEEEEE
T ss_pred             EEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECCCC---------------------------HHHHHHHHHHCCCEEEE
Confidence            8654321  224678899999999999988855311                           13777888899999776


Q ss_pred             Ee
Q 022248          279 LG  280 (300)
Q Consensus       279 ~~  280 (300)
                      ..
T Consensus       140 e~  141 (225)
T 3kr9_A          140 ES  141 (225)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.61  E-value=9.8e-15  Score=120.35  Aligned_cols=105  Identities=15%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C--C-CCcccE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V--S-DASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~-~~~~D~  197 (300)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|++++...++. .+++++.+|+.+. + +  . .+.||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            67899999999999999998742  679999999999999999999988875 4699999998653 1 1  1 267999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |++...   ......+++++.++|+|||++++.+..
T Consensus       137 v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          137 IFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             EEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             EEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            998754   345678899999999999988886643

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.61  E-value=1.9e-14  Score=122.21  Aligned_cols=147  Identities=13%  Similarity=0.074  Sum_probs=97.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE-ecccCcCC---CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIP---VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~~---~~~~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++....+|+|+|+++.|++.+.+..       +++... ..++..++   ++..+||+|+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-------~rv~~~~~~ni~~l~~~~l~~~~fD~v~  156 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-------DRVRSMEQYNFRYAEPVDFTEGLPSFAS  156 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-------TTEEEECSCCGGGCCGGGCTTCCCSEEE
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cccceecccCceecchhhCCCCCCCEEE
Confidence            357799999999999999998875669999999999998854421       244332 34444433   3445699999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      +..+++++   ..++.+++++|||||.++++.....+.+..  .+.+ ...... ........+++.++++++||.+..+
T Consensus       157 ~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--~~~~-~G~vrd-~~~~~~~~~~v~~~~~~~Gf~v~~~  229 (291)
T 3hp7_A          157 IDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGRE--QIGK-NGIVRE-SSIHEKVLETVTAFAVDYGFSVKGL  229 (291)
T ss_dssp             ECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--GCC--CCCCCC-HHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChh--hcCC-CCccCC-HHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            98887755   667999999999999999974221111100  0000 000000 0001124568999999999998888


Q ss_pred             eeecc
Q 022248          280 GNAFL  284 (300)
Q Consensus       280 ~~~~~  284 (300)
                      ....+
T Consensus       230 ~~spi  234 (291)
T 3hp7_A          230 DFSPI  234 (291)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            76555

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.61  E-value=1.3e-15  Score=133.48  Aligned_cols=154  Identities=16%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcC-------CC--CCCEEEEecccCcC--CC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAG-------LP--LTNFKFLQAVGEAI--PV  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~-------~~--~~~~~~~~~d~~~~--~~  190 (300)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++...+       +.  ..+++++.+|+.+.  ++
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            47789999999999999999874  33799999999999999999987532       10  14899999999876  56


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhh----hhhcCCcccc----
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQ----QIVSDGCHLT----  262 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----  262 (300)
                      +++.||+|++..     +++..++.++.++|+|||++++..............+...-..+.    .......+..    
T Consensus       184 ~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~  258 (336)
T 2b25_A          184 KSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAK  258 (336)
T ss_dssp             ----EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCCCEEECC--
T ss_pred             CCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEecccceEEEeec
Confidence            677899999853     333447899999999999999887533221122222211100000    0000011111    


Q ss_pred             ---hHHHHHHHhcCCcEEEEeee
Q 022248          263 ---RQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       263 ---~~~~~~l~~aGf~~v~~~~~  282 (300)
                         .++.+.|+++||+.+++...
T Consensus       259 ~~~g~y~~~l~~aGF~~v~~~~~  281 (336)
T 2b25_A          259 QKNGILAQKVESKINTDVQLDSQ  281 (336)
T ss_dssp             -----------------------
T ss_pred             ccccchhhhhccccccccccccc
Confidence               27888999999998887654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.61  E-value=2.4e-14  Score=122.35  Aligned_cols=137  Identities=14%  Similarity=0.034  Sum_probs=98.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcC-CHHHHHHHHHHH-----HHcCCC---CCCEEEEecccCcCC--C--
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDP-NRKMEKYAQTAA-----VAAGLP---LTNFKFLQAVGEAIP--V--  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~-s~~~~~~a~~~~-----~~~~~~---~~~~~~~~~d~~~~~--~--  190 (300)
                      .++.+|||+|||+|.++..++.....+|+++|+ ++.+++.|++++     +..++.   .+++.+...+..+..  +  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467899999999999999888754449999999 899999999998     444431   026777755543321  1  


Q ss_pred             --CCCcccEEEEcccccCcccHHHHHHHHHHccc---C--CcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248          191 --SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLK---P--GGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR  263 (300)
Q Consensus       191 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (300)
                        .+++||+|++..++++.++...+++.+.++|+   |  ||+++++.......      +              .....
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~------~--------------~~~~~  217 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH------L--------------AERDL  217 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC----------------------------CT
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc------c--------------chhHH
Confidence              35789999999999999999999999999999   9  99987754221110      0              00123


Q ss_pred             HHHHHHHhcC-CcEEEEe
Q 022248          264 QTGNNISEAG-FSSVELG  280 (300)
Q Consensus       264 ~~~~~l~~aG-f~~v~~~  280 (300)
                      ++.+.++++| |+++.+.
T Consensus       218 ~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          218 AFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             HHHHHHHHSTTEEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEec
Confidence            6677888999 9987774

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.61  E-value=2.3e-15  Score=133.49  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=91.0

Q ss_pred             HHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcCCCCCCcc
Q 022248          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      ++.+. .++.+|||+|||+|.++..+++. ++.+++++|+++.+++.++++++..++. ..+++|+.+|+.+ ++++++|
T Consensus       215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~f  293 (375)
T 4dcm_A          215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRF  293 (375)
T ss_dssp             HHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCE
T ss_pred             HHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCe
Confidence            33443 34589999999999999999874 4789999999999999999999888753 1258899999877 5567899


Q ss_pred             cEEEEcccccCcc-----cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVK-----DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+++..+++..     ....+++++.++|||||+++++...
T Consensus       294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             EEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             eEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            9999988877532     2246899999999999999998743

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.60  E-value=9.9e-15  Score=124.46  Aligned_cols=127  Identities=18%  Similarity=0.225  Sum_probs=103.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|+++++..++. +++.++.+|+.+. ++++.||+|++.
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~D~V~~~  188 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG-FDEKDVDALFLD  188 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc-ccCCccCEEEEC
Confidence            46789999999999999999875  3679999999999999999999887763 4799999998776 566789999983


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                           .+++..+++++.++|+|||.+++......       .                  ..++.+.|+++||..+++..
T Consensus       189 -----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-------~------------------~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          189 -----VPDPWNYIDKCWEALKGGGRFATVCPTTN-------Q------------------VQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             -----CSCGGGTHHHHHHHEEEEEEEEEEESSHH-------H------------------HHHHHHHHHHSSEEEEEEEC
T ss_pred             -----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH-------H------------------HHHHHHHHHHCCCceeEEEE
Confidence                 45667889999999999999999884210       0                  12566778889999877754


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       239 ~  239 (277)
T 1o54_A          239 S  239 (277)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.60  E-value=1.5e-15  Score=133.41  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++   .+.++.+|+...+  +++||+|+++.
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Iv~~~  269 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV---EGEVFASNVFSEV--KGRFDMIISNP  269 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTC--CSCEEEEEECC
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCEEEEccccccc--cCCeeEEEECC
Confidence            35679999999999999999874 456999999999999999999988775   3577888886643  67999999998


Q ss_pred             cccC-----cccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          203 VLCS-----VKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       203 ~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+++     ..+...+++++.++|||||.++++....
T Consensus       270 ~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          270 PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            8875     3456789999999999999999987543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=9.3e-15  Score=119.75  Aligned_cols=102  Identities=24%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++++...++.  ++.++.+|+......+++||+|++.
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~  153 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD--NVIVIVGDGTLGYEPLAPYDRIYTT  153 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCCCCCCCeeEEEEC
Confidence            467899999999999999998743  379999999999999999999887764  7999999985432235789999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .++++++      .++.++|||||++++....
T Consensus       154 ~~~~~~~------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          154 AAGPKIP------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             SBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred             CchHHHH------HHHHHHcCCCcEEEEEECC
Confidence            9999886      5899999999999998743

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.59  E-value=1e-14  Score=120.44  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=104.2

Q ss_pred             HHHHhhcCCCCchhHHHHHHHHH-hhhh--HhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEE
Q 022248           78 MAMLNRLHPPRPDWYEEFYASVM-NSSM--KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVL  152 (300)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~  152 (300)
                      .+++..........+.+...... ....  .........++..+....  ++.+|||||||+|..+..+++.  .+.+++
T Consensus        16 ~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   93 (225)
T 3tr6_A           16 YQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLM--QAKKVIDIGTFTGYSAIAMGLALPKDGTLI   93 (225)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHH--TCSEEEEECCTTSHHHHHHHTTCCTTCEEE
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHhCCCCCEEE
Confidence            44455544444455544444332 1111  111122333444444332  6779999999999999999874  268999


Q ss_pred             EEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CC----CCcccEEEEcccccCcccHHHHHHHHHHcccCCcE
Q 022248          153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS----DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI  226 (300)
Q Consensus       153 giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  226 (300)
                      ++|+++.+++.|+++++..++. .+++++.+|+.+. + +.    .++||+|++...   ..+...+++++.++|||||+
T Consensus        94 ~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~  169 (225)
T 3tr6_A           94 TCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGL  169 (225)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEE
T ss_pred             EEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcE
Confidence            9999999999999999988875 5699999998553 2 11    178999997543   34677889999999999999


Q ss_pred             EEEEecc
Q 022248          227 YLFVEHV  233 (300)
Q Consensus       227 l~~~~~~  233 (300)
                      +++.+..
T Consensus       170 lv~~~~~  176 (225)
T 3tr6_A          170 IAVDNVL  176 (225)
T ss_dssp             EEEECSS
T ss_pred             EEEeCCC
Confidence            9997644

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.59  E-value=3e-16  Score=131.07  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=90.5

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...++. +++.++++|+..++ ++++||+|++...+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~D~v~~~~~~  154 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFLLLA-SFLKADVVFLSPPW  154 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred             CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence            6789999999999999999975 579999999999999999999988863 48999999998876 56899999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEE
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      ++..+....+.++.++|+|||.+++
T Consensus       155 ~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          155 GGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             SSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             CCcchhhhHHHHHHhhcCCcceeHH
Confidence            9887776677889999999998555

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.59  E-value=6.1e-15  Score=116.65  Aligned_cols=98  Identities=20%  Similarity=0.306  Sum_probs=82.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  193 (300)
                      .++.+|||+|||+|.++..+++.  ++.+++++|+++ +++.            .++.++.+|+...+        ++++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCCCC
Confidence            46789999999999999999875  357999999999 6532            37899999998876        6778


Q ss_pred             cccEEEEcccccCcccH-----------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDV-----------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +||+|++...+++..+.           ..+++++.++|+|||.+++..+..
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            99999998888877554           688999999999999999987543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.59  E-value=1.2e-14  Score=128.13  Aligned_cols=103  Identities=25%  Similarity=0.317  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc--
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT--  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--  201 (300)
                      .++++|||||||+|.++..+++....+|++||.|+ +++.|++.++.+++. ++|+++.++++++.++ +.||+|++-  
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i~~~~~~~~lp-e~~DvivsE~~  158 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVLPGPVETVELP-EQVDAIVSEWM  158 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEEeeeeeeecCC-ccccEEEeecc
Confidence            37889999999999999888776566899999986 889999999999986 6899999999998876 789999984  


Q ss_pred             -ccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          202 -LVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       202 -~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                       ..+.+-.....++....++|||||.++-
T Consensus       159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          159 GYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccchhhhHHHHHHhhCCCCceECC
Confidence             3444445677888999999999999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.59  E-value=1.5e-14  Score=125.74  Aligned_cols=102  Identities=25%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++. . ..+|+|+|+++.+++.|+++++..++.  +++++.+|+.+.+..+++||+|++.
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~--~v~~~~~d~~~~~~~~~~fD~Iv~~  151 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGVPEFSPYDVIFVT  151 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEECChhhccccCCCeEEEEEc
Confidence            46789999999999999999874 2 357999999999999999999888874  6999999998865456789999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .+++++.      +++.++|||||++++....
T Consensus       152 ~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          152 VGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             SBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             CCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence            9999986      6788999999999997643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.59  E-value=4e-15  Score=139.14  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=93.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||.|.++..|++ .+++|+|||+++.+++.|+.++.+.+..  +++|.+++++++  .+.+++||+|+|.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~-~ga~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLAS-KGATIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHh-CCCEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHHhhhccCCCccEEEEC
Confidence            3678999999999999999997 4789999999999999999999877642  799999999987  4667899999999


Q ss_pred             ccccCcccHHH--HHHHHHHcccCCcEEEEEecccCC
Q 022248          202 LVLCSVKDVDM--TLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       202 ~~l~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      .+++|++++..  .+..+.+.|+++|..++......+
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e  178 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE  178 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred             cchhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence            99999988753  356677888998888887765544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.58  E-value=1e-14  Score=120.87  Aligned_cols=100  Identities=29%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++....+    ++.++.+|+......+++||+|++..+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~v~~~~~  143 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEEEKPYDRVVVWAT  143 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccccccCCCccEEEECCc
Confidence            467899999999999999998754 799999999999999999876543    789999999773334578999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++++.      .++.++|+|||++++.....
T Consensus       144 ~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          144 APTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             BSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             HHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            99886      47899999999999987543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.58  E-value=4.6e-15  Score=130.18  Aligned_cols=104  Identities=20%  Similarity=0.258  Sum_probs=84.5

Q ss_pred             HHHhhcCCCCeEEEECCC------CChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          118 LFDNLRGKAKKVLEIGIG------TGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      ++..+..++.+|||||||      +|..+..+++.  ++.+++|+|+++.|..         .  .++++|+++|+.+++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---------~--~~rI~fv~GDa~dlp  277 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---------D--ELRIRTIQGDQNDAE  277 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---------C--BTTEEEEECCTTCHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---------c--CCCcEEEEecccccc
Confidence            344444567899999999      67667666653  6789999999998721         1  258999999999988


Q ss_pred             CC------CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          190 VS------DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +.      +++||+|++.. .+++.+....|++++++|||||++++.+..
T Consensus       278 f~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          278 FLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             hhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            76      68999999875 467788889999999999999999998765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=2.3e-14  Score=121.02  Aligned_cols=107  Identities=15%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH---cCCCCCCEEEEecccCcC-------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA---AGLPLTNFKFLQAVGEAI-------PVSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~---~~~~~~~~~~~~~d~~~~-------~~~~  192 (300)
                      .++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++..   .++. +++.++.+|+.+.       ++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhhhhhhhccCC
Confidence            35679999999999999999875 467999999999999999999877   6663 4699999999876       3567


Q ss_pred             CcccEEEEcccccCc------------------ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          193 ASVDAVVGTLVLCSV------------------KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++||+|+++-.....                  .+...+++.+.++|||||+++++.
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            899999997322211                  236778999999999999999975

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.57  E-value=2.3e-14  Score=124.28  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.++++++..++.  ++.++.+|+..++..++.||+|++.
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL--NVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--eEEEEECChhhcccccccCCEEEEe
Confidence            46789999999999999999874  3479999999999999999999988874  7999999998876556789999984


Q ss_pred             ------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 ------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                            .++...++                ...+++++.++|||||++++++...
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence                  22332222                1478999999999999999987543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=7e-15  Score=115.84  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C--CCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V--SDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|.++..+++. +..++|+|+++.+++.|++++...++   +++++.+|+.+. + .  ..++||+|++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            6789999999999999999875 44599999999999999999988765   789999998763 2 1  1347999999


Q ss_pred             cccccCcccHHHHHHHHH--HcccCCcEEEEEeccc
Q 022248          201 TLVLCSVKDVDMTLQEVR--RVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~  234 (300)
                      ...++  .+....++.+.  ++|+|||++++.....
T Consensus       117 ~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          117 APPYA--MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            87654  44555666666  9999999999987544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.57  E-value=1e-14  Score=120.86  Aligned_cols=146  Identities=14%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE-ecccCcC---CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAI---PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~---~~~~~~~D~v~  199 (300)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++..       ++... ..++..+   .+....||.+.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-------RVVVMEQFNFRNAVLADFEQGRPSFTS  108 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-------TEEEECSCCGGGCCGGGCCSCCCSEEE
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-------cccccccceEEEeCHhHcCcCCCCEEE
Confidence            3567999999999999999988644599999999999998776532       22221 1122111   11112245555


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhh--hhcCCcccchHHHHHHHhcCCcEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQ--IVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      +..++.++   ..++.++.++|||||++++.....     +...+.. ......  .......+.+++.++++++||+++
T Consensus       109 ~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~~p~-----~e~~~~~-~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~  179 (232)
T 3opn_A          109 IDVSFISL---DLILPPLYEILEKNGEVAALIKPQ-----FEAGREQ-VGKNGIIRDPKVHQMTIEKVLKTATQLGFSVK  179 (232)
T ss_dssp             ECCSSSCG---GGTHHHHHHHSCTTCEEEEEECHH-----HHSCHHH-HC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             EEEEhhhH---HHHHHHHHHhccCCCEEEEEECcc-----cccCHHH-hCcCCeecCcchhHHHHHHHHHHHHHCCCEEE
Confidence            54444443   567999999999999999964111     1100100 000000  000012356799999999999998


Q ss_pred             EEeeeccC
Q 022248          278 ELGNAFLS  285 (300)
Q Consensus       278 ~~~~~~~~  285 (300)
                      .+....+.
T Consensus       180 ~~~~~pi~  187 (232)
T 3opn_A          180 GLTFSPIK  187 (232)
T ss_dssp             EEEECSSC
T ss_pred             EEEEccCC
Confidence            88765553

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.57  E-value=3.8e-14  Score=118.68  Aligned_cols=106  Identities=20%  Similarity=0.315  Sum_probs=85.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--------CCCCCCEEEEecccCc-CC--CC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--------GLPLTNFKFLQAVGEA-IP--VS  191 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~-~~--~~  191 (300)
                      .++.+|||||||+|.++..+++. +...++|+|+++.+++.++++++..        ++  .++.++.+|+.+ ++  ++
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF--QNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT--TTEEEEECCTTSCGGGTSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC--CcEEEEeccHHHHHHHhcc
Confidence            36779999999999999999874 4568999999999999999988765        55  489999999986 55  77


Q ss_pred             CCcccEEEEcccccCcccH--------HHHHHHHHHcccCCcEEEEEe
Q 022248          192 DASVDAVVGTLVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++.+|.|+..+.-.+....        ..++.++.++|+|||+|++..
T Consensus       126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            8899999865422211110        478999999999999999965

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.56  E-value=1.7e-14  Score=123.04  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=89.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHc-C-CCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-G-LPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~-~-~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++... + +. +++.++.+|+.+.+++++.||+|+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~~~~~~~D~v~  176 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSELPDGSVDRAV  176 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcCCCCCceeEEE
Confidence            46789999999999999999874  4679999999999999999998876 4 22 589999999998888788999999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +.     ++++..+++++.++|+|||++++..+.
T Consensus       177 ~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          177 LD-----MLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             EE-----SSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             EC-----CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            83     356667899999999999999998853

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=2.2e-14  Score=119.34  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=85.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-CcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~  202 (300)
                      .++.+|||||||+|.++..+++..+.+++++|+++.+++.|++++...++.  ++.++.+|+ ..++++ +.||+|++..
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~-~~~~~~~~~fD~Ii~~~  166 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK--NVHVILGDG-SKGFPPKAPYDVIIVTA  166 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEECCc-ccCCCCCCCccEEEECC
Confidence            467899999999999999998743379999999999999999999888764  699999997 344443 3599999999


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +++++.      .++.++|+|||++++....
T Consensus       167 ~~~~~~------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          167 GAPKIP------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             BBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred             cHHHHH------HHHHHhcCCCcEEEEEEec
Confidence            998875      4789999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.56  E-value=4.3e-14  Score=117.81  Aligned_cols=149  Identities=17%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             HHHHhhcCCCCchhHHHHHHHHHhhhhH--hHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCC--CceEEE
Q 022248           78 MAMLNRLHPPRPDWYEEFYASVMNSSMK--SYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLG  153 (300)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~~g  153 (300)
                      .+++........+.+.+...........  ...+.....+..++..  .++.+|||||||+|..+..+++..  +.++++
T Consensus        13 ~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~   90 (239)
T 2hnk_A           13 EEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKI--SGAKRIIEIGTFTGYSSLCFASALPEDGKILC   90 (239)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHH--HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHccCCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHh--hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEE
Confidence            4555555444455555444433222111  1112223333343332  367899999999999999998743  679999


Q ss_pred             EcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C--------------CCC--CcccEEEEcccccCcccHHHHHHH
Q 022248          154 VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--------------VSD--ASVDAVVGTLVLCSVKDVDMTLQE  216 (300)
Q Consensus       154 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~--------------~~~--~~~D~v~~~~~l~~~~~~~~~l~~  216 (300)
                      +|+++.+++.|++++...++. .++.++.+|+... +              |++  ++||+|++...   ..+...++++
T Consensus        91 vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~  166 (239)
T 2hnk_A           91 CDVSEEWTNVARKYWKENGLE-NKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPL  166 (239)
T ss_dssp             EESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHH
Confidence            999999999999999888764 4699999997552 2              222  78999998754   3456688999


Q ss_pred             HHHcccCCcEEEEEec
Q 022248          217 VRRVLKPGGIYLFVEH  232 (300)
Q Consensus       217 ~~~~LkpgG~l~~~~~  232 (300)
                      +.++|+|||++++.+.
T Consensus       167 ~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          167 ILKLLKPGGLLIADNV  182 (239)
T ss_dssp             HHHHEEEEEEEEEECS
T ss_pred             HHHHcCCCeEEEEEcc
Confidence            9999999999999763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.56  E-value=1.6e-14  Score=131.88  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=93.1

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      +...+++.+. .++.+|||||||+|.++..+++.+..+|+|+|+++ +++.|+++++..++. ++++++.+|+++++++ 
T Consensus       146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCCS-
T ss_pred             HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEEECchhhCccC-
Confidence            3444444443 46789999999999999999886667999999998 999999999988875 5899999999987765 


Q ss_pred             CcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEE
Q 022248          193 ASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      ++||+|++...++++.  +....+.++.++|||||++++
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            6899999987767663  446678899999999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=4.1e-14  Score=117.44  Aligned_cols=105  Identities=19%  Similarity=0.201  Sum_probs=87.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----CCCCC--Cccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSD--ASVD  196 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~--~~~D  196 (300)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|+++++..++. .+++++.+|+.+    ++..+  ++||
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            56799999999999999998742  579999999999999999999888874 579999999754    23333  7899


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|++...   ..+...+++++.++|+|||++++.+..
T Consensus       151 ~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          151 LIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9998654   356778899999999999999997643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=3.1e-15  Score=124.97  Aligned_cols=115  Identities=19%  Similarity=0.111  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~  189 (300)
                      .++..++..  .++.+|||||||+|..+..+++.  .+.+++++|+++.+++.|+++++..++. ++++++.+|+.+. +
T Consensus        50 ~~l~~l~~~--~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~  126 (242)
T 3r3h_A           50 QFMQMLIRL--TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPALDTLH  126 (242)
T ss_dssp             HHHHHHHHH--HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCHHHHHH
T ss_pred             HHHHHHHhh--cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH
Confidence            344444433  25679999999999999999874  3679999999999999999999998875 5899999998664 2


Q ss_pred             CC-----CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          190 VS-----DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..     +++||+|++...   ..+...+++++.++|||||++++.+..
T Consensus       127 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            21     478999998654   356677899999999999999996644

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.56  E-value=3e-14  Score=117.66  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=87.4

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCCCCCCcccE
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      ..++.+|||+|||+|.++..+++.  ...+++++|+++.+++.+++++...++   ..+++.++.+|+...+..++.||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            356789999999999999999874  336999999999999999999887553   124799999998876555678999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |++...++++      ++++.++|||||++++....
T Consensus       155 i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVV------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence            9999888776      37899999999999997743

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.56  E-value=5.5e-14  Score=122.62  Aligned_cols=109  Identities=20%  Similarity=0.207  Sum_probs=87.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----CCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~  199 (300)
                      .++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|+++++..++...++.++++|+.++..    .++.||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            35679999999999999999875 4499999999999999999999888752259999999876531    146899999


Q ss_pred             Eccc----------ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GTLV----------LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~~~----------l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +.--          .+...+...++.++.++|+|||++++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            8421          123345678899999999999998876643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.55  E-value=2.4e-14  Score=118.32  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=87.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC------CceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCC----C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIP----V  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~----~  190 (300)
                      .++.+|||||||+|.++..+++..      ..+++++|+++.+++.|++++...++   ...++.++.+|+....    .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            567899999999999999998743      36999999999999999999887762   1248999999998754    4


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..++||+|++...++++      ++++.++|||||++++....
T Consensus       159 ~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          159 ELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            56789999999988876      48889999999999998743

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.54  E-value=3.1e-13  Score=114.95  Aligned_cols=108  Identities=17%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCc-CCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEA-IPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~~D~v~  199 (300)
                      +.+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++...  ++..++++++.+|+.. ++..+++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            36789999999999999999876 4579999999999999999987542  3434689999999866 344457899999


Q ss_pred             EcccccCccc----HHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKD----VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.......+.    ...+++++.++|+|||++++..
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            9654322111    2578999999999999999865

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.54  E-value=2e-13  Score=112.76  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.++++++..    +++.++.+|+....   ...++||+|
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCCceEE
Confidence            46789999999999999999874  3479999999999999998887543    48999999997732   123689999


Q ss_pred             EEcccccCcccHH-HHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVD-MTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++...   .++.. .++.++.++|||||++++..
T Consensus       148 ~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          148 FEDVA---QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EECCC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCC---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            98654   23343 45999999999999999983

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=6.8e-14  Score=118.89  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. ...+++|+|+++.+++.|+++++..++.  ++.++.+|+.+.+. .+.||+|++..
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~--~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN--NVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS--SEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEECChHHcCc-cCCceEEEECC
Confidence            46789999999999999999875 4569999999999999999999998874  78999999988743 67899999875


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      ..    +...++.++.+.|+|||++++.+....
T Consensus       195 p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          195 VH----KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             CS----SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             cc----cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            43    556678999999999999999886553

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.53  E-value=2.3e-14  Score=118.51  Aligned_cols=102  Identities=12%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-------ceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCCCCC-
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-------VQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSD-  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-------~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~-  192 (300)
                      .++.+|||||||+|.++..+++..+       .+++++|+++.+++.|++++...+.   ...++.++.+|+.. ++++ 
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~  161 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN  161 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence            5678999999999999999887433       5999999999999999998876541   01479999999877 3443 


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.||+|++...++++.      +++.++|||||++++...
T Consensus       162 ~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             CSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred             CCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence            7899999999998875      789999999999999774

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.53  E-value=1.3e-13  Score=115.26  Aligned_cols=102  Identities=25%  Similarity=0.248  Sum_probs=88.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++++|+++.+++.|+++....++. ++++++.+|+.+...+++.||+|++.  
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~--  165 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAEVPEGIFHAAFVD--  165 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSCCCTTCBSEEEEC--
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEEEcChhhcccCCCcccEEEEC--
Confidence            46789999999999999999877 779999999999999999999887764 48999999988754356789999983  


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                         .+++..+++++.++|+|||++++...
T Consensus       166 ---~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          166 ---VREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             ---SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             ---CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence               35667789999999999999999884

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.53  E-value=3.8e-14  Score=118.76  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C-----CCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-----SDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~  195 (300)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|+++++..++. ++++++.+|+.+. + +     ++++|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            5679999999999999999874 2 679999999999999999999988874 5899999998653 3 2     15789


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+|++...   ..+...+++++.++|||||++++.+
T Consensus       158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            99998653   3467788999999999999999865

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.52  E-value=1.1e-14  Score=122.25  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhC---CCceEEEEcCCHHHHHHHHHHHHHc---CCCCCC---------------------
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAA---GLPLTN---------------------  177 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~~~~a~~~~~~~---~~~~~~---------------------  177 (300)
                      ++.+|||+|||+|.++..+++.   .+.+++|+|+++.+++.|++++...   ++. .+                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-ARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-ccchhhhhhhhhcccccchhhhh
Confidence            5679999999999999998864   3578999999999999999887644   321 11                     


Q ss_pred             ----EE-------------EEecccCcCCC-----CCCcccEEEEcccccCcc---------cHHHHHHHHHHcccCCcE
Q 022248          178 ----FK-------------FLQAVGEAIPV-----SDASVDAVVGTLVLCSVK---------DVDMTLQEVRRVLKPGGI  226 (300)
Q Consensus       178 ----~~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~LkpgG~  226 (300)
                          ++             |+++|+.+...     ..+.||+|+++....+..         ....+++++.++|+|||+
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence                55             89999876431     345899999976544332         345789999999999999


Q ss_pred             EEEEecc
Q 022248          227 YLFVEHV  233 (300)
Q Consensus       227 l~~~~~~  233 (300)
                      ++++...
T Consensus       210 l~~~~~~  216 (250)
T 1o9g_A          210 IAVTDRS  216 (250)
T ss_dssp             EEEEESS
T ss_pred             EEEeCcc
Confidence            9996543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.52  E-value=2.8e-13  Score=116.38  Aligned_cols=108  Identities=17%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCc-CCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEA-IPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~  199 (300)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++..  .++..++++++.+|+.. ++..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            35689999999999999999876 457999999999999999998754  23323589999999866 344467899999


Q ss_pred             EcccccCcc-----cHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVK-----DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.....++.     ....+++++.++|+|||++++..
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            853321121     12678999999999999999965

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.52  E-value=2.3e-13  Score=118.18  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++..  .++..++++++.+|+.+. +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            35689999999999999999875 467999999999999999998754  223235899999998663 33457899999


Q ss_pred             EcccccC--cccH--HHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCS--VKDV--DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~--~~~~--~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +......  ....  ..+++++.++|+|||++++...
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            8643211  1111  6789999999999999999653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.52  E-value=1e-13  Score=114.58  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CC--C--Ccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS--D--ASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~--~--~~~  195 (300)
                      .++.+|||+|||+|.++..+++. + +.+++++|+++.+++.|+++++..++. ++++++.+|+.+. + +.  .  ++|
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            36789999999999999999874 2 679999999999999999999988874 5899999998553 1 11  1  689


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|++...   ..+...+++++.++|+|||++++.+.
T Consensus       147 D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          147 DVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99998653   34567789999999999999999664

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.52  E-value=1.5e-13  Score=122.48  Aligned_cols=145  Identities=13%  Similarity=0.064  Sum_probs=105.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C---CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P---VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~---~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++...+++|+++|+.+. +   ...+.||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            36789999999999999999875445899999999999999999999887522899999998663 2   1246899999


Q ss_pred             Ecccc---------cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          200 GTLVL---------CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       200 ~~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      +.--.         ....+...++.++.++|+|||.+++..........   .+                 .+.+.+.+.
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~---~~-----------------~~~i~~~~~  350 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVS---QF-----------------KKQIEKGFG  350 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH---HH-----------------HHHHHHHHT
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHH---HH-----------------HHHHHHHHH
Confidence            84221         12234456788889999999999998754432110   00                 125566777


Q ss_pred             hcCCcEEEEeeeccCCcc
Q 022248          271 EAGFSSVELGNAFLSNAS  288 (300)
Q Consensus       271 ~aGf~~v~~~~~~~~~~~  288 (300)
                      ++|.++++.......++.
T Consensus       351 ~~g~~~~~~~~~~~D~p~  368 (385)
T 2b78_A          351 KQKHTYLDLQQLPSDFAV  368 (385)
T ss_dssp             TCCCEEEEEECCCTTSCC
T ss_pred             HcCCcEEEeCCCCCCCCC
Confidence            889986665555444443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.51  E-value=9.4e-14  Score=132.37  Aligned_cols=138  Identities=18%  Similarity=0.204  Sum_probs=105.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEcc-
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTL-  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~-  202 (300)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++..++++++++|+.+ ++...++||+|++.- 
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            678999999999999999987555579999999999999999999998854589999999977 344567899999843 


Q ss_pred             ----------cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          203 ----------VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       203 ----------~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                                ++....+...++.++.++|+|||+|++........                          .-.+.|++.
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~--------------------------~~~~~l~~~  672 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR--------------------------MDLDGLAKL  672 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC--------------------------CCHHHHHHT
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc--------------------------cCHHHHHHc
Confidence                      22333566788999999999999999877432111                          013566778


Q ss_pred             CCcEEEEeeeccCCcc
Q 022248          273 GFSSVELGNAFLSNAS  288 (300)
Q Consensus       273 Gf~~v~~~~~~~~~~~  288 (300)
                      ||+...+....+...+
T Consensus       673 g~~~~~i~~~~lp~df  688 (703)
T 3v97_A          673 GLKAQEITQKTLSQDF  688 (703)
T ss_dssp             TEEEEECTTTTCCGGG
T ss_pred             CCceeeeeeccCCCCC
Confidence            8886666555544333

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.50  E-value=3.3e-13  Score=116.91  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=86.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH--cC-CCCCCEEEEecccCc-CCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AG-LPLTNFKFLQAVGEA-IPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~--~~-~~~~~~~~~~~d~~~-~~~~~~~~D~v  198 (300)
                      +.+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++..  .+ +..++++++.+|+.. ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            46689999999999999999875 457999999999999999998764  22 223589999999876 34446789999


Q ss_pred             EEcccccC---cc--c--HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCS---VK--D--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~---~~--~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++....+.   -+  .  ...+++++.++|||||++++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            99765543   11  1  3678999999999999999964

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.50  E-value=1.3e-13  Score=111.65  Aligned_cols=96  Identities=18%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----------  189 (300)
                      .++.+|||+|||+|.++..+++. +  +.+++|+|+++..           .  .+++.++++|+...+           
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~--~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P--IPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C--CTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C--CCCceEEEccccchhhhhhccccccc
Confidence            46789999999999999999874 3  5799999999831           1  147899999998776           


Q ss_pred             --------------CCCCcccEEEEcccccCc----ccH-------HHHHHHHHHcccCCcEEEEEec
Q 022248          190 --------------VSDASVDAVVGTLVLCSV----KDV-------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 --------------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                                    +++++||+|++...+++.    .+.       ..+++++.++|||||.+++..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                          566799999998877653    222       2378999999999999998664

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.50  E-value=1.7e-13  Score=120.89  Aligned_cols=107  Identities=23%  Similarity=0.193  Sum_probs=90.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..++..  +..+++|+|+++.+++.|+++++..++.  +++|+++|+.+++.+.+.||+|+++
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~--~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS--WIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT--TCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeCChhhCccccCCCCEEEEC
Confidence            46789999999999999999873  4579999999999999999999999875  8999999999988777789999995


Q ss_pred             ccccCc--------ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSV--------KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      -.....        .....+++++.++|||||.+++...
T Consensus       280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            432211        1236789999999999999999874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.50  E-value=1.4e-12  Score=115.70  Aligned_cols=103  Identities=12%  Similarity=0.087  Sum_probs=85.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCC-CCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPV-SDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~v~~~  201 (300)
                      ++.+|||+| |+|.++..++.. +..+++++|+++.+++.|+++++..++.  +++++.+|+.. ++. .+++||+|+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE--DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC--CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEEChhhhhchhhccCCccEEEEC
Confidence            578999999 999999999874 3479999999999999999999988874  89999999988 664 35789999997


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEE-EEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIY-LFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l-~~~~  231 (300)
                      ..+... ....+++++.++|||||++ ++..
T Consensus       249 ~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          249 PPETLE-AIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             CCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             CCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence            654433 3578899999999999955 4443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.50  E-value=5.2e-13  Score=113.92  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc--CC-------CCCCEEEEecccCcC-CCCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GL-------PLTNFKFLQAVGEAI-PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~--~~-------~~~~~~~~~~d~~~~-~~~~~  193 (300)
                      ..+.+|||||||+|.++..+++.+..+++++|+++.+++.|++++ ..  ++       ..++++++.+|+.+. +. ++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            466899999999999999998775569999999999999999987 33  22       236899999998653 33 57


Q ss_pred             cccEEEEcccccCcc--c--HHHHHHHHHHcccCCcEEEEEe
Q 022248          194 SVDAVVGTLVLCSVK--D--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +||+|++.......+  .  ...+++++.++|+|||++++..
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            899999865432111  1  2568999999999999999864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=1.6e-13  Score=117.29  Aligned_cols=103  Identities=21%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc---cEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV---DAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---D~v~~~  201 (300)
                      ++.+|||+|||+|.++..++..++.+++|+|+|+.+++.|+++++..++. .+++|+++|+... ++ ++|   |+|+++
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-DRFFVRKGEFLEP-FK-EKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-TSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcchhh-cc-cccCCCCEEEEc
Confidence            56799999999999999998766779999999999999999999988874 3699999999763 22 579   999996


Q ss_pred             ------------ccccCccc--------HHHHHHHHH-HcccCCcEEEEEe
Q 022248          202 ------------LVLCSVKD--------VDMTLQEVR-RVLKPGGIYLFVE  231 (300)
Q Consensus       202 ------------~~l~~~~~--------~~~~l~~~~-~~LkpgG~l~~~~  231 (300)
                                  .+. |-+.        ...+++++. +.|+|||++++..
T Consensus       200 PPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          200 PPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             CCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             CCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence                        122 2221        236899999 9999999999843

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.49  E-value=6.7e-14  Score=116.43  Aligned_cols=98  Identities=13%  Similarity=0.228  Sum_probs=80.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCC-Ccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSD-ASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~  195 (300)
                      ++.+|||||||+|..+..+++.     ++.+|+|+|+++.+++.|+.      + .++++++++|+.+.   +..+ .+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~-~~~v~~~~gD~~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------D-MENITLHQGDCSDLTTFEHLREMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------G-CTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------c-CCceEEEECcchhHHHHHhhccCCC
Confidence            4679999999999999998864     46899999999999988872      1 15899999999874   5433 479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHH-cccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRR-VLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~-~LkpgG~l~~~~~  232 (300)
                      |+|++...  | .+...++.++.+ +|||||++++.+.
T Consensus       154 D~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          154 PLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            99998665  2 377789999997 9999999999764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.49  E-value=5.3e-13  Score=112.90  Aligned_cols=132  Identities=13%  Similarity=0.090  Sum_probs=102.8

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..++.+|||+|||+|.++..++.....+|+++|+++.+++.++++++.+++. ++++++.+|+.+++. .+.||.|+++.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~-~~v~~~~~D~~~~~~-~~~~D~Vi~~~  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG-ENIADRILMGY  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCcHHHhcc-ccCCCEEEECC
Confidence            3578999999999999999998876679999999999999999999999986 689999999988763 57899999764


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                      -    +....++..+.++|||||++.+.+.......                   .....+.+.+...+.|++...+
T Consensus       201 p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-------------------~~~~~e~i~~~~~~~g~~v~~~  254 (278)
T 3k6r_A          201 V----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-------------------PREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             C----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-------------------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred             C----CcHHHHHHHHHHHcCCCCEEEEEeeeccccc-------------------chhHHHHHHHHHHHcCCcEEEE
Confidence            2    2234567888899999999988765432210                   0111236677788899985443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.48  E-value=2.2e-13  Score=117.33  Aligned_cols=108  Identities=15%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCc-CCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEA-IPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~  199 (300)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++..  .++..++++++.+|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            46689999999999999999875 357999999999999999998765  33323689999999866 344568899999


Q ss_pred             EcccccCcc----cHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.......+    ....+++++.++|+|||++++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            865432211    12468999999999999999866

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.48  E-value=4.4e-13  Score=118.94  Aligned_cols=130  Identities=23%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ..++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+++++..++. ++++++++|+.++++++++||+|+++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCcccCCcCEEEEC
Confidence            34778999999999999999987432 48999999999999999999998874 58999999999998888899999996


Q ss_pred             cccc-------CcccH-HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          202 LVLC-------SVKDV-DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       202 ~~l~-------~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      -...       .+.+. ..+++++.++|  +|.++++...                            .+.+.+.+.+.|
T Consensus       294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~----------------------------~~~~~~~~~~~G  343 (373)
T 3tm4_A          294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE----------------------------KKAIEEAIAENG  343 (373)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC----------------------------HHHHHHHHHHTT
T ss_pred             CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC----------------------------HHHHHHHHHHcC
Confidence            4322       12222 56788899988  5555555421                            125667888999


Q ss_pred             CcEEEEeeec
Q 022248          274 FSSVELGNAF  283 (300)
Q Consensus       274 f~~v~~~~~~  283 (300)
                      |+.......+
T Consensus       344 ~~~~~~~~~~  353 (373)
T 3tm4_A          344 FEIIHHRVIG  353 (373)
T ss_dssp             EEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            9977665443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.48  E-value=6.8e-13  Score=118.79  Aligned_cols=111  Identities=17%  Similarity=0.090  Sum_probs=90.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCcCCC----CCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIPV----SDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~----~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..++.....+++++|+++.+++.|+++++.+++ . ++++|+.+|+.+...    ..+.||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-GGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-cceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            36789999999999999999976556999999999999999999998886 4 379999999876521    24689999


Q ss_pred             EEcc---------cccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          199 VGTL---------VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       199 ~~~~---------~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      ++.-         ......+...++.++.++|+|||++++++....
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9853         222335667889999999999999999885443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=3.1e-13  Score=116.10  Aligned_cols=105  Identities=14%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             CCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGTL  202 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~  202 (300)
                      ..+|||||||+|.++..+++ .++.++++||+++.+++.|++++....  .++++++.+|+...  .+++++||+|++..
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            34999999999999999998 577899999999999999999864322  25899999998764  34568999999864


Q ss_pred             cccCc-cc---HHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSV-KD---VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~-~~---~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..... +.   ...++++++++|+|||+|++...
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            33321 11   25789999999999999998764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.47  E-value=2.7e-13  Score=112.88  Aligned_cols=104  Identities=21%  Similarity=0.245  Sum_probs=87.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-C-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-C-----CCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-----SDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~  195 (300)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|+++++..++. ++++++.+|+.+. + +     ++++|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            6789999999999999999874 2 679999999999999999999988874 5799999998653 2 2     25789


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|++...   ..+...+++++.++|+|||++++.+.
T Consensus       149 D~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          149 DFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99998642   34667889999999999999988653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.47  E-value=3.9e-13  Score=113.31  Aligned_cols=99  Identities=13%  Similarity=0.020  Sum_probs=81.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ..+.+|||||||+|.++..+++.. .+++++|+++.+++.|++.+..  .++..++++++.+|+....   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            356899999999999999998774 8999999999999999876532  1122358999999987764   789999986


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .     .++..+++++.++|+|||++++..
T Consensus       147 ~-----~dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 Q-----EPDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             S-----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-----CChHHHHHHHHHhcCCCcEEEEEc
Confidence            3     345568999999999999999864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.47  E-value=6.2e-13  Score=115.86  Aligned_cols=108  Identities=24%  Similarity=0.236  Sum_probs=85.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI--PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~--~~~~~~~D~v  198 (300)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++...  ++..++++++.+|+...  ..++++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45689999999999999999875 3579999999999999999987652  33235899999998764  2346789999


Q ss_pred             EEccccc-Cc-cc--HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLC-SV-KD--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~-~~-~~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++..... +. .+  ...+++++.++|+|||++++..
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9865421 11 11  3678999999999999999964

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.47  E-value=1.2e-13  Score=111.02  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-----------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-----------D  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------~  192 (300)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+++..           .  .+++.++++|+.+.+..           .
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~--~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E--IAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C--CTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c--CCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            57889999999999999999876 7799999999741           1  24899999999876421           1


Q ss_pred             CcccEEEEcccccCc----cc-------HHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSV----KD-------VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~----~~-------~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++||+|++.......    .+       ...+++.+.++|||||.|++..+.
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence            489999997543321    11       246789999999999999987753

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.47  E-value=1.1e-12  Score=111.96  Aligned_cols=109  Identities=10%  Similarity=0.049  Sum_probs=85.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC--CCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +++.+|||||||+|.++..+++. +..+++++|+++.+++.|++.+...+  +..++++++.+|+... +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            46689999999999999999875 35799999999999999999875431  2235899999998663 33367899999


Q ss_pred             EcccccCcc--cH--HHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCSVK--DV--DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~~~--~~--~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.......+  ..  ..+++++.++|+|||++++...
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            854433222  22  5889999999999999998753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.47  E-value=2.5e-13  Score=117.45  Aligned_cols=108  Identities=17%  Similarity=0.124  Sum_probs=82.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCc-CCCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEA-IPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~~D~v~  199 (300)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++...  ++..++++++.+|+.. ++..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            35689999999999999999875 4579999999999999999987543  3323589999999866 333567899999


Q ss_pred             EcccccCcccH----HHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKDV----DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.......+..    ..+++++.++|+|||++++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            86532211111    578999999999999999865

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.46  E-value=9.7e-13  Score=119.58  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~  199 (300)
                      .++.+|||+|||+|..+..+++. .+ .+++++|+++.+++.++++++..++.  ++.++.+|+..++  ++++.||+|+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK--IVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEEEcChhhcchhhccCCCCEEE
Confidence            46789999999999999999873 23 69999999999999999999988874  7999999998876  5557899999


Q ss_pred             E------cccccCcccH----------------HHHHHHHHHcccCCcEEEEEecccC
Q 022248          200 G------TLVLCSVKDV----------------DMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       200 ~------~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +      ..+++..++.                ..++.++.++|||||++++++....
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            6      2334433332                5689999999999999999886543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.45  E-value=2.1e-12  Score=104.98  Aligned_cols=126  Identities=15%  Similarity=0.019  Sum_probs=94.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.++++++..++   +++++.+|+..++   +.||+|+++..
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---~~~D~v~~~~p  121 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEFN---SRVDIVIMNPP  121 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGCC---CCCSEEEECCC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEECchHHcC---CCCCEEEEcCC
Confidence            46789999999999999999876445899999999999999999877765   7999999998875   48999999877


Q ss_pred             ccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      .+...  ....+++++.+++  || +++.....   ...                     .+.+.+.+.+.||+...+..
T Consensus       122 ~~~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~---~~~---------------------~~~~~~~l~~~g~~~~~~~~  174 (207)
T 1wy7_A          122 FGSQRKHADRPFLLKAFEIS--DV-VYSIHLAK---PEV---------------------RRFIEKFSWEHGFVVTHRLT  174 (207)
T ss_dssp             CSSSSTTTTHHHHHHHHHHC--SE-EEEEEECC---HHH---------------------HHHHHHHHHHTTEEEEEEEE
T ss_pred             CccccCCchHHHHHHHHHhc--Cc-EEEEEeCC---cCC---------------------HHHHHHHHHHCCCeEEEEEE
Confidence            66553  3356788888888  44 44433111   000                     12455678889998766654


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       175 ~  175 (207)
T 1wy7_A          175 T  175 (207)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.45  E-value=1e-12  Score=106.29  Aligned_cols=95  Identities=14%  Similarity=0.017  Sum_probs=74.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++.       +++++++|+.+++   ++||+|+++..
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v~~~~p  119 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTWIMNPP  119 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEEEECCC
Confidence            4678999999999999999987644479999999999999998853       6899999998875   68999999988


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++++.+.  ..+++++.+++   |.++++.
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~---g~~~~~~  146 (200)
T 1ne2_A          120 FGSVVKHSDRAFIDKAFETS---MWIYSIG  146 (200)
T ss_dssp             C-------CHHHHHHHHHHE---EEEEEEE
T ss_pred             chhccCchhHHHHHHHHHhc---CcEEEEE
Confidence            8887542  46788899888   4444444

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.45  E-value=5.4e-13  Score=118.83  Aligned_cols=108  Identities=19%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----CCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|.++..++.. ..+++++|+++.+++.|+++++.+++.  +++|+.+|+.+...    .+++||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~--~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC--CceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            6779999999999999999876 678999999999999999999998874  59999999876521    2578999998


Q ss_pred             cccc---------cCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 TLVL---------CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .--.         ....+...++.++.++|+|||.+++++....
T Consensus       286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            4321         1113456789999999999999999886543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.45  E-value=2.7e-13  Score=115.33  Aligned_cols=109  Identities=11%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----CCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~  197 (300)
                      .++.+|||+|||+|..+..+++.  ...+++++|+++.+++.++++++..++.  ++.++.+|+..++.    ..+.||+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL--NTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEEeCChHhcchhhhhccccCCE
Confidence            46789999999999999999873  3379999999999999999999988874  89999999987654    2578999


Q ss_pred             EEEcc------ccc------------CcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTL------VLC------------SVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~------~l~------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++.-      ++.            .......+++++.++|||||++++++...
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            99862      111            11345788999999999999999987544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.44  E-value=7.4e-13  Score=106.66  Aligned_cols=98  Identities=21%  Similarity=0.244  Sum_probs=75.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC----------ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE-ecccCcCC---
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD----------VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIP---  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~----------~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~~---  189 (300)
                      .++.+|||+|||+|.++..+++..+          .+++|+|+++.+           .+  .++.++ .+|+...+   
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~--~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL--EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC--TTCEEECSCCTTSHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC--CCCeEEEeccCCCHHHHH
Confidence            4678999999999999999987532          689999999831           11  468888 88876543   


Q ss_pred             -----CCCCcccEEEEcccccC----cccH-------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          190 -----VSDASVDAVVGTLVLCS----VKDV-------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       190 -----~~~~~~D~v~~~~~l~~----~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                           +++++||+|++...++.    ..+.       ..+++++.++|||||.+++..+..
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                 34568999999765443    2233       478999999999999999987544

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.44  E-value=6.8e-13  Score=118.77  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=91.0

Q ss_pred             hhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----CCCccc
Q 022248          121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVD  196 (300)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D  196 (300)
                      .+..++.+|||+|||+|.++..++.....+++++|+++.+++.|+++++..++. ++++|+.+|+.+...    .++.||
T Consensus       213 ~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEECCHHHHHHHHHhhCCCCC
Confidence            333467899999999999999999764559999999999999999999988874 389999999876521    257899


Q ss_pred             EEEEcccc---------cCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          197 AVVGTLVL---------CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       197 ~v~~~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +|++.--.         ....+...++.++.++|+|||.+++++....
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            99985321         1124456789999999999999999886543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.43  E-value=2.1e-12  Score=106.52  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=91.4

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      ..++..+ .+..+|||||||.|.++..++.. +..+|+++|+++.+++.+++++...++   ...+...|...-+ +.+.
T Consensus       124 ~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~---~~~~~v~D~~~~~-p~~~  198 (281)
T 3lcv_B          124 RELFRHL-PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV---PHRTNVADLLEDR-LDEP  198 (281)
T ss_dssp             HHHGGGS-CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC---CEEEEECCTTTSC-CCSC
T ss_pred             HHHHhcc-CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeeecccC-CCCC
Confidence            3344444 45789999999999999998774 778999999999999999999998886   4788888876655 4588


Q ss_pred             ccEEEEcccccCcccHHH-HHHHHHHcccCCcEEEEEec
Q 022248          195 VDAVVGTLVLCSVKDVDM-TLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ||+++++-+++++++..+ ..-++.+.|+|+|.++-...
T Consensus       199 ~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             CSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence            999999999999976632 33399999999998877653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=3.4e-12  Score=113.60  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             HHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccE
Q 022248          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDA  197 (300)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~  197 (300)
                      +..+..++.+|||+|||+|.++..++.. +..|+++|+|+.+++.|+++++.+++.   ..+.++|+.+. +...+.||+
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~---~~~~~~D~~~~l~~~~~~fD~  283 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR---VDIRHGEALPTLRGLEGPFHH  283 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCHHHHHHTCCCCEEE
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC---CcEEEccHHHHHHHhcCCCCE
Confidence            3344445889999999999999999875 556999999999999999999988874   35668888664 221344999


Q ss_pred             EEEcccccC---------cccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          198 VVGTLVLCS---------VKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       198 v~~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      |++.--...         ..+...++..+.++|+|||+|++.......
T Consensus       284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          284 VLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             EEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             EEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            998532211         134467899999999999999987755443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.43  E-value=8.7e-14  Score=118.10  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH-HcCCCCCCEEEE--ecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFL--QAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..+++... ..... .++.|+  ++|+..++  +++||+|+|
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~Vvs  154 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME--PFQADTVLC  154 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC--CCCcCEEEE
Confidence            46789999999999999999876  6999999998 5433221100 00000 168899  99998876  679999999


Q ss_pred             cccccCcccH----H---HHHHHHHHcccCCc--EEEEEecc
Q 022248          201 TLVLCSVKDV----D---MTLQEVRRVLKPGG--IYLFVEHV  233 (300)
Q Consensus       201 ~~~l~~~~~~----~---~~l~~~~~~LkpgG--~l~~~~~~  233 (300)
                      ..+ ++..+.    .   .++.++.++|||||  .|++..+.
T Consensus       155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            877 443221    1   37899999999999  99987765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.42  E-value=8.8e-12  Score=112.72  Aligned_cols=149  Identities=20%  Similarity=0.223  Sum_probs=104.8

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I  188 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~  188 (300)
                      +...+++.+. .++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|+++++..++.  +++|+.+|+.+    +
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~--~v~f~~~d~~~~l~~~  350 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ--NVTFYHENLEEDVTKQ  350 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCTTSCCSSS
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEECCHHHHhhhh
Confidence            3344444443 45689999999999999999875 679999999999999999999988874  89999999977    3


Q ss_pred             CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          189 PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       189 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      ++.+++||+|++.---...   ..+++.+.+ ++|++.++++....    .+   .                  .+. ..
T Consensus       351 ~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~----tl---a------------------rd~-~~  400 (433)
T 1uwv_A          351 PWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPA----TL---A------------------RDS-EA  400 (433)
T ss_dssp             GGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHH----HH---H------------------HHH-HH
T ss_pred             hhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChH----HH---H------------------hhH-HH
Confidence            4566789999985322211   234454443 78999888866211    01   0                  022 45


Q ss_pred             HHhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          269 ISEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                      |.+.||....+...++   +..++|+..++
T Consensus       401 l~~~Gy~~~~~~~~d~---Fp~t~HvE~v~  427 (433)
T 1uwv_A          401 LLKAGYTIARLAMLDM---FPHTGHLESMV  427 (433)
T ss_dssp             HHHTTCEEEEEEEECC---STTSSCCEEEE
T ss_pred             HHHCCcEEEEEEEecc---CCCCCeEEEEE
Confidence            6678999887765544   45677765443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.41  E-value=1.3e-13  Score=116.32  Aligned_cols=103  Identities=13%  Similarity=0.104  Sum_probs=75.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH-HcCCCCCCEEEE--ecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFL--QAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||||||+|.++..+++.  .+|+|||+++ ++..+++... ..... .++.++  ++|+..++  +++||+|+|
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~V~s  146 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP--VERTDVIMC  146 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC--CCCCcEEEE
Confidence            56789999999999999999876  6999999998 5322221100 00000 168889  99998876  679999999


Q ss_pred             cccccCcccH----H---HHHHHHHHcccCCc--EEEEEecc
Q 022248          201 TLVLCSVKDV----D---MTLQEVRRVLKPGG--IYLFVEHV  233 (300)
Q Consensus       201 ~~~l~~~~~~----~---~~l~~~~~~LkpgG--~l~~~~~~  233 (300)
                      ..+ ++..++    .   .++.++.++|||||  .|++..+.
T Consensus       147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            877 443222    1   37899999999999  99997765

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.39  E-value=3.1e-12  Score=104.52  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=86.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||.|.++..+.  +...|+++|+++.+++.+++.+...+.   +..+..+|....+.+ ++||+|++.-+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~---~~~~~v~D~~~~~~~-~~~DvvLllk~  177 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW---DFTFALQDVLCAPPA-EAGDLALIFKL  177 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC---EEEEEECCTTTSCCC-CBCSEEEEESC
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeecccCCCC-CCcchHHHHHH
Confidence            467899999999999999887  778999999999999999999888773   789999999887765 58999999999


Q ss_pred             ccCcccHH-HHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVD-MTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~-~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++++++.. ....++.+.|+++|+++-..
T Consensus       178 lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          178 LPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            99986553 33448888999998777655

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.38  E-value=1.7e-12  Score=110.98  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      .+++.+. .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++...+.. ++++++.+|+.+++++  .|
T Consensus        19 ~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~~~~--~f   94 (285)
T 1zq9_A           19 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTDLP--FF   94 (285)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSCCC--CC
T ss_pred             HHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcceecccch--hh
Confidence            3444443 46789999999999999999875 459999999999999999988655542 4899999999888765  79


Q ss_pred             cEEEEcccccCcccHH-HHH--------------HHH--HHcccCCcEEE
Q 022248          196 DAVVGTLVLCSVKDVD-MTL--------------QEV--RRVLKPGGIYL  228 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~-~~l--------------~~~--~~~LkpgG~l~  228 (300)
                      |+|+++...+...+.. .++              +|+  +++|+|||.++
T Consensus        95 D~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           95 DTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             SEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            9999965443322221 122              233  36899999653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.37  E-value=7e-12  Score=109.65  Aligned_cols=102  Identities=11%  Similarity=0.097  Sum_probs=86.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++.. ++ ...+++++|+++.+++.|+++++..++. +++.++.+|+.+..   +.||+|++.-.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~-~~v~~~~~D~~~~~---~~fD~Vi~dpP  267 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE-HKIIPILSDVREVD---VKGNRVIMNLP  267 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECChHHhc---CCCcEEEECCc
Confidence            4778999999999999999 86 5779999999999999999999998874 48999999998875   78999998531


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                       .   ....++..+.++|+|||.+++.+....
T Consensus       268 -~---~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          268 -K---FAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             -T---TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             -H---hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence             1   123678999999999999999886543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.37  E-value=2.2e-12  Score=116.46  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=87.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+..+++.  ....|+++|+++.+++.++++++..++.  ++.++.+|+..++ ..++.||+|++
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~--nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS--NAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS--SEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhhhccccCCEEEE
Confidence            46789999999999999999873  3469999999999999999999999874  7999999987764 23578999997


Q ss_pred             cc------cccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 TL------VLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .-      ++..-++                ...++.++.++|||||+|++++....
T Consensus       182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence            32      2221111                12679999999999999999875443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.36  E-value=3.8e-12  Score=116.02  Aligned_cols=108  Identities=15%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~  201 (300)
                      ++.+|||+|||+|..+..+++.  ....|+++|+++.+++.++++++..++.  ++.++.+|+..++. .++.||+|++.
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~--nv~~~~~D~~~~~~~~~~~fD~Il~D  194 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS--NVALTHFDGRVFGAAVPEMFDAILLD  194 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCCSTTHHHHSTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHhhhhccccCCEEEEC
Confidence            6789999999999999999874  3479999999999999999999988874  79999999988753 45789999972


Q ss_pred             ------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 ------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                            .++...++                ...++.++.++|||||+|++++...
T Consensus       195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                  12222121                2467999999999999999987644

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.35  E-value=2.2e-12  Score=116.64  Aligned_cols=108  Identities=17%  Similarity=0.188  Sum_probs=86.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+..+++.  ....|+++|+++.+++.++++++..++  . +.++.+|+..++ +.++.||+|++
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~--~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA--P-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC--C-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--e-EEEEECCHHHhhhhccccCCEEEE
Confidence            46789999999999999999874  336999999999999999999999887  3 889999987765 34578999996


Q ss_pred             c------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          201 T------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .      .++..-++                ...++.++.++|||||+|++++...
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            2      12222122                2668999999999999999987544

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.33  E-value=7.8e-12  Score=109.78  Aligned_cols=120  Identities=23%  Similarity=0.229  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHhCC------CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe
Q 022248          111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ  182 (300)
Q Consensus       111 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~------~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~  182 (300)
                      +...+..++..+.  .++.+|||+|||+|.++..+++..      ..+++|+|+++.+++.|+.++...++   ++.++.
T Consensus       114 i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---~~~i~~  190 (344)
T 2f8l_A          114 IGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLH  190 (344)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---CceEEE
Confidence            3444444554442  356799999999999998887632      16899999999999999999887775   578899


Q ss_pred             cccCcCCCCCCcccEEEEcccccCcccH------------------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          183 AVGEAIPVSDASVDAVVGTLVLCSVKDV------------------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       183 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|..... ..+.||+|+++-.+.+++..                  ..+++++.+.|+|||+++++.+..
T Consensus       191 ~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          191 QDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             SCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            9976633 45789999998665444321                  257999999999999999988543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.31  E-value=3.1e-12  Score=110.11  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=74.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcC----CHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcCCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDP----NRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v  198 (300)
                      .++.+|||||||+|.++..+++.  .+|+|+|+    ++.+++.+.    ......+++.|+++ |+..++  .++||+|
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~D~~~l~--~~~fD~V  152 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP----MSTYGWNLVRLQSGVDVFFIP--PERCDTL  152 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC----CCSTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH----hhhcCCCCeEEEeccccccCC--cCCCCEE
Confidence            56789999999999999999876  58999999    554332111    01111147899999 887765  4689999


Q ss_pred             EEccccc---CcccHH---HHHHHHHHcccCCcEEEEEeccc
Q 022248          199 VGTLVLC---SVKDVD---MTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|..+++   +..+..   .++.++.++|||||.|++..+..
T Consensus       153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9977653   222322   47899999999999999866543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.31  E-value=1.1e-11  Score=112.03  Aligned_cols=109  Identities=16%  Similarity=0.199  Sum_probs=88.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|..+..+++. .+.+++++|+++.+++.++++++..++   ++.++.+|+..++  ++++.||+|++
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC---CeEEEeCchhhchhhcccCCCCEEEE
Confidence            46789999999999999999874 337999999999999999999998876   4788999998775  55678999996


Q ss_pred             c------ccccCcccH----------------HHHHHHHHHcccCCcEEEEEecccC
Q 022248          201 T------LVLCSVKDV----------------DMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       201 ~------~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .      .++++.++.                ..+++++.++|||||++++++....
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            2      233333332                4779999999999999999885443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.30  E-value=1.2e-11  Score=109.60  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=100.5

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCC-
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSD-  192 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~-  192 (300)
                      ..+++.+...+.+|||+|||+|.++..+++ ...+|+|+|+++.+++.|+++++.+++.  +++|+.+|++++.  +.. 
T Consensus       204 ~~~~~~~~~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~--~v~~~~~d~~~~~~~~~~~  280 (369)
T 3bt7_A          204 EWALDVTKGSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHID--NVQIIRMAAEEFTQAMNGV  280 (369)
T ss_dssp             HHHHHHTTTCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCC--SEEEECCCSHHHHHHHSSC
T ss_pred             HHHHHHhhcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECCHHHHHHHHhhc
Confidence            334444433467899999999999999986 4569999999999999999999988874  8999999987641  121 


Q ss_pred             -------------CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCc
Q 022248          193 -------------ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGC  259 (300)
Q Consensus       193 -------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (300)
                                   +.||+|++.---      ..+..++.+.|+++|.++++...+..   .   .               
T Consensus       281 ~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~p~t---~---a---------------  333 (369)
T 3bt7_A          281 REFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCNPET---L---C---------------  333 (369)
T ss_dssp             CCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESCHHH---H---H---------------
T ss_pred             cccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECCHHH---H---H---------------
Confidence                         379999974211      12345677778899999888753321   1   1               


Q ss_pred             ccchHHHHHHHhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          260 HLTRQTGNNISEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       260 ~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                         .++..+. + ||++..+...++   |+.|+|+..++
T Consensus       334 ---rd~~~l~-~-~y~~~~~~~~D~---FP~T~HvE~v~  364 (369)
T 3bt7_A          334 ---KNLETLS-Q-THKVERLALFDQ---FPYTHHMQCGV  364 (369)
T ss_dssp             ---HHHHHHH-H-HEEEEEEEEECC---STTSSCCEEEE
T ss_pred             ---HHHHHHh-h-CcEEEEEEeecc---CCCCCcEEEEE
Confidence               1333332 2 688777766655   56777766543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.29  E-value=1.8e-10  Score=103.52  Aligned_cols=99  Identities=20%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++++..++  . ++|+.+|+.++..  ..||+|++.-.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl--~-v~~~~~d~~~~~~--~~fD~Vv~dPP  362 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV--D-AEFEVASDREVSV--KGFDTVIVDPP  362 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC--C-EEEEECCTTTCCC--TTCSEEEECCC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--c-EEEEECChHHcCc--cCCCEEEEcCC
Confidence            46789999999999999999875 56999999999999999999988876  3 9999999988743  28999998543


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -...  ...+++.+. .|+|+|.++++.
T Consensus       363 r~g~--~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          363 RAGL--HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             TTCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred             ccch--HHHHHHHHH-hcCCCcEEEEEC
Confidence            2111  123455554 489999999976

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.28  E-value=3.3e-11  Score=103.64  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++...++  ++++++.+|+..++++  .||+|+++..
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~--~~v~~~~~D~~~~~~~--~~D~Vv~n~p  115 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY--NNLEVYEGDAIKTVFP--KFDVCTANIP  115 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEC----CCSSCCC--CCSEEEEECC
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEECchhhCCcc--cCCEEEEcCC
Confidence            46789999999999999999875 66999999999999999999877665  4899999999888754  8999998654


Q ss_pred             ccCcccH-HHHH---------------HHHHHcccCCc
Q 022248          204 LCSVKDV-DMTL---------------QEVRRVLKPGG  225 (300)
Q Consensus       204 l~~~~~~-~~~l---------------~~~~~~LkpgG  225 (300)
                      .+..... ..++               +.+.|+++++|
T Consensus       116 y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            3322211 2233               44678888877

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.27  E-value=1.8e-11  Score=104.09  Aligned_cols=114  Identities=10%  Similarity=0.037  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCC------ChhHHHhHh-CC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE-EecccCcCCCCCCc
Q 022248          124 GKAKKVLEIGIGT------GPNLKYYAA-DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF-LQAVGEAIPVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~------G~~~~~l~~-~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~  194 (300)
                      .++.+|||+|||+      |.  ..+++ .+ +.+|+|+|+++.             +  ++++| +++|+.+++++ ++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v--~~v~~~i~gD~~~~~~~-~~  123 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V--SDADSTLIGDCATVHTA-NK  123 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B--CSSSEEEESCGGGCCCS-SC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C--CCCEEEEECccccCCcc-Cc
Confidence            5678999999955      55  33333 22 579999999997             1  26788 99999888764 78


Q ss_pred             ccEEEEcccccC-----------cccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccch
Q 022248          195 VDAVVGTLVLCS-----------VKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR  263 (300)
Q Consensus       195 ~D~v~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (300)
                      ||+|+++...+.           ......+++++.++|||||.|++..+....                         .+
T Consensus       124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~-------------------------~~  178 (290)
T 2xyq_A          124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-------------------------NA  178 (290)
T ss_dssp             EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-------------------------CH
T ss_pred             ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC-------------------------HH
Confidence            999999654221           112357899999999999999997643211                         13


Q ss_pred             HHHHHHHhcCCcEEEEe
Q 022248          264 QTGNNISEAGFSSVELG  280 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~  280 (300)
                      ++.+++++.||..+++.
T Consensus       179 ~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          179 DLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHcCCcEEEEE
Confidence            66777888888876665

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.21  E-value=6.6e-10  Score=97.66  Aligned_cols=159  Identities=11%  Similarity=-0.003  Sum_probs=101.0

Q ss_pred             CCeEEEECCCCChhHHHhHh----------------CCCceEEEEcCCHHHHHHHHHHHHHcC-----------C--CCC
Q 022248          126 AKKVLEIGIGTGPNLKYYAA----------------DTDVQVLGVDPNRKMEKYAQTAAVAAG-----------L--PLT  176 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~----------------~~~~~~~giD~s~~~~~~a~~~~~~~~-----------~--~~~  176 (300)
                      ..+|+|+|||+|..+..++.                .+..++...|+........-+.+....           .  ...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999988877632                146788888887766555444432210           0  000


Q ss_pred             CEEEEecccCcCCCCCCcccEEEEcccccCcc--------------------------------------cHHHHHHHHH
Q 022248          177 NFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK--------------------------------------DVDMTLQEVR  218 (300)
Q Consensus       177 ~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--------------------------------------~~~~~l~~~~  218 (300)
                      -+.-+.+.+..-.+++++||+|+++.+|||+.                                      |...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01122333334457899999999999999985                                      3445788999


Q ss_pred             HcccCCcEEEEEecccCCCc-------------hHHHHHHHhhhhh---hh-----hhcCCcccchHHHHHHH-hcCCcE
Q 022248          219 RVLKPGGIYLFVEHVAAKDG-------------TFLKFWQNVVDPL---QQ-----IVSDGCHLTRQTGNNIS-EAGFSS  276 (300)
Q Consensus       219 ~~LkpgG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~l~-~aGf~~  276 (300)
                      +.|+|||++++.........             .+...|..+....   ..     .......+.+|++.+++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999887654321             1111222222111   01     01123467899999998 599998


Q ss_pred             EEEeeecc
Q 022248          277 VELGNAFL  284 (300)
Q Consensus       277 v~~~~~~~  284 (300)
                      ..++....
T Consensus       293 ~~le~~~~  300 (374)
T 3b5i_A          293 DKLVVYKG  300 (374)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEee
Confidence            88876544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.18  E-value=8.1e-12  Score=104.29  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=62.2

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-  192 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-  192 (300)
                      ...+++.+. .++.+|||||||+|.++..+++.. .+++|+|+++.+++.+++++...    ++++++.+|+.++++++ 
T Consensus        19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~~~~   93 (244)
T 1qam_A           19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFPKN   93 (244)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCcccC
Confidence            334444443 467899999999999999998754 69999999999999999886532    48999999999988764 


Q ss_pred             CcccEEEE
Q 022248          193 ASVDAVVG  200 (300)
Q Consensus       193 ~~~D~v~~  200 (300)
                      ..| .|++
T Consensus        94 ~~~-~vv~  100 (244)
T 1qam_A           94 QSY-KIFG  100 (244)
T ss_dssp             CCC-EEEE
T ss_pred             CCe-EEEE
Confidence            345 3444

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.16  E-value=1.4e-10  Score=99.04  Aligned_cols=83  Identities=20%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCc
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (300)
                      ..+++.+. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...    ++++++.+|+.++++++..
T Consensus        40 ~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           40 NKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCcccCC
Confidence            33444443 46789999999999999999975 669999999999999999988732    4899999999998888778


Q ss_pred             ccEEEEccc
Q 022248          195 VDAVVGTLV  203 (300)
Q Consensus       195 ~D~v~~~~~  203 (300)
                      ||+|+++..
T Consensus       115 fD~Iv~NlP  123 (295)
T 3gru_A          115 FNKVVANLP  123 (295)
T ss_dssp             CSEEEEECC
T ss_pred             ccEEEEeCc
Confidence            999997643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.13  E-value=5.3e-10  Score=99.50  Aligned_cols=107  Identities=18%  Similarity=0.107  Sum_probs=83.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C--------------------------------------CceEEEEcCCHHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T--------------------------------------DVQVLGVDPNRKMEKYA  164 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------------------------------~~~~~giD~s~~~~~~a  164 (300)
                      .++..|||++||+|.+++.++.. .                                      ..+++|+|+++.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            46789999999999998877641 1                                      14699999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc--ccccCc--ccHHHHHHHHHHcccC--CcEEEEEec
Q 022248          165 QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT--LVLCSV--KDVDMTLQEVRRVLKP--GGIYLFVEH  232 (300)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--~~l~~~--~~~~~~l~~~~~~Lkp--gG~l~~~~~  232 (300)
                      ++++...++. .+++++++|+.+++.+ ++||+|+++  +....-  .+...+++++.+.||+  ||.++++..
T Consensus       280 r~Na~~~gl~-~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          280 KQNAVEAGLG-DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHTTCT-TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHcCCC-CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999999885 4699999999998765 589999997  322211  2334566767777766  999988774

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.11  E-value=3.4e-13  Score=112.84  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-CcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++.  .  .++++++.+|+.++++++ ++| .|+++.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~~~~~~f-~vv~n~  101 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQFPNKQRY-KIVGNI  101 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTCCCSSEE-EEEEEC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCcccCCCc-EEEEeC
Confidence            46779999999999999999875 4799999999999999887654  1  258999999999988764 678 565542


Q ss_pred             cccCcc------------cHHHHH----HHHHHcccCCcEEEEEe
Q 022248          203 VLCSVK------------DVDMTL----QEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 ~l~~~~------------~~~~~l----~~~~~~LkpgG~l~~~~  231 (300)
                       .++..            +....+    +.+.|+|+|||.+.+..
T Consensus       102 -Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          102 -PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             -CSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             -CccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence             12211            112223    66889999999877643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.11  E-value=1.2e-09  Score=96.81  Aligned_cols=107  Identities=17%  Similarity=0.140  Sum_probs=84.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C--------------------------------------CceEEEEcCCHHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T--------------------------------------DVQVLGVDPNRKMEKYA  164 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------------------------------~~~~~giD~s~~~~~~a  164 (300)
                      .++..|||.+||+|.+++.++.. .                                      ..+++|+|+++.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            46789999999999998887641 1                                      14699999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc--cccc--CcccHHHHHHHHHHcccC--CcEEEEEec
Q 022248          165 QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT--LVLC--SVKDVDMTLQEVRRVLKP--GGIYLFVEH  232 (300)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--~~l~--~~~~~~~~l~~~~~~Lkp--gG~l~~~~~  232 (300)
                      +++++..++. ..++|+++|+.+++.+ +.||+|+++  +...  .-.+...+++++.+.||+  ||.++++..
T Consensus       273 r~Na~~~gl~-~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          273 RKNAREVGLE-DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHTTCT-TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHcCCC-CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            9999999885 4799999999998765 589999997  3222  113445677777777776  999999874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.11  E-value=2.4e-10  Score=103.76  Aligned_cols=109  Identities=19%  Similarity=0.084  Sum_probs=84.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--------------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .++.+|||+|||+|.++..+++.              ....++|+|+++.+++.|+.++...++...++.+.++|....+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            35679999999999999888753              2357999999999999999998877764225778899987766


Q ss_pred             CCCCcccEEEEcccccCccc-----------------HHHHHHHHHHcccCCcEEEEEecc
Q 022248          190 VSDASVDAVVGTLVLCSVKD-----------------VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .. +.||+|+++--+.....                 ...+++++.++|||||+++++.+.
T Consensus       250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            44 48999999743332211                 136799999999999999998853

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.10  E-value=6.4e-10  Score=97.82  Aligned_cols=154  Identities=16%  Similarity=0.089  Sum_probs=99.9

Q ss_pred             CCeEEEECCCCChhHHHhHhC------------------CCceEEEEcCC-----------HHHHHHHHHHHHHcCCCCC
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD------------------TDVQVLGVDPN-----------RKMEKYAQTAAVAAGLPLT  176 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~~~giD~s-----------~~~~~~a~~~~~~~~~~~~  176 (300)
                      ..+|+|+||++|..+..+...                  +..+++..|+.           +.+.+.+++   ..+.. .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~-~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRK-I  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCC-T
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCC-C
Confidence            578999999999888766542                  34788899987           333333211   12211 1


Q ss_pred             CEEEEeccc---CcCCCCCCcccEEEEcccccCcccHH---------------------------------------HHH
Q 022248          177 NFKFLQAVG---EAIPVSDASVDAVVGTLVLCSVKDVD---------------------------------------MTL  214 (300)
Q Consensus       177 ~~~~~~~d~---~~~~~~~~~~D~v~~~~~l~~~~~~~---------------------------------------~~l  214 (300)
                      +..|+.+..   ..-.|+++++|+|+++.+|||+.+..                                       .+|
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            234555443   33468899999999999999984331                                       126


Q ss_pred             HHHHHcccCCcEEEEEecccCCC--c-----hHHHHHHHhhhhh----hh---h-hcCCcccchHHHHHHHhc-CCcEEE
Q 022248          215 QEVRRVLKPGGIYLFVEHVAAKD--G-----TFLKFWQNVVDPL----QQ---I-VSDGCHLTRQTGNNISEA-GFSSVE  278 (300)
Q Consensus       215 ~~~~~~LkpgG~l~~~~~~~~~~--~-----~~~~~~~~~~~~~----~~---~-~~~~~~~~~~~~~~l~~a-Gf~~v~  278 (300)
                      +..++.|+|||++++........  .     .+...|..+....    ..   . ....+.+.+|++.++++. +|++..
T Consensus       209 ~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~  288 (384)
T 2efj_A          209 RIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY  288 (384)
T ss_dssp             HHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred             HHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence            66699999999999988766554  2     4444444332211    00   0 112356789999999998 588877


Q ss_pred             Eeeec
Q 022248          279 LGNAF  283 (300)
Q Consensus       279 ~~~~~  283 (300)
                      ++...
T Consensus       289 le~~~  293 (384)
T 2efj_A          289 LETFN  293 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.09  E-value=1e-09  Score=97.41  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=84.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-C--------------------------------------CceEEEEcCCHHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-T--------------------------------------DVQVLGVDPNRKMEKYA  164 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------------------------------~~~~~giD~s~~~~~~a  164 (300)
                      .++.+|||++||+|.++..++.. .                                      ..+++|+|+++.+++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            46789999999999999887652 1                                      15799999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc-Cc---ccHHHHHHHHHHcccC--CcEEEEEec
Q 022248          165 QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC-SV---KDVDMTLQEVRRVLKP--GGIYLFVEH  232 (300)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~-~~---~~~~~~l~~~~~~Lkp--gG~l~~~~~  232 (300)
                      ++++...++. ++++|.++|+.+++.+ +.||+|+++--.. .+   .+...+++++.+.||+  ||.++++..
T Consensus       274 r~Na~~~gl~-~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          274 RENAEIAGVD-EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHTCG-GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHcCCC-CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            9999998875 5799999999988754 5899999964322 11   2345667777777776  888888773

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.07  E-value=1.7e-09  Score=93.12  Aligned_cols=108  Identities=13%  Similarity=0.039  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC---CcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD---ASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~v  198 (300)
                      .++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.++++++..++.  ++.++.+|+..++...   +.||.|
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCChHhcCccccccCCCCEE
Confidence            46789999999999999999873  4579999999999999999999998874  8999999998775332   579999


Q ss_pred             EEc------ccccCcc-----------cH-------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          199 VGT------LVLCSVK-----------DV-------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~~------~~l~~~~-----------~~-------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++.      .++..-+           +.       ..+|..+.++|+ ||+|+.++...
T Consensus       179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            972      1221111           11       246777888887 99988876543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.05  E-value=3.1e-09  Score=85.18  Aligned_cols=99  Identities=16%  Similarity=0.036  Sum_probs=77.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--CCCCEEEEecccCcC--------------
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL--PLTNFKFLQAVGEAI--------------  188 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~d~~~~--------------  188 (300)
                      +..+|||+|||  +.+..+++..+.+++.+|.++...+.|++.++..++  . ++++++.+|+.+.              
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCchhhhcccccccchhhhh
Confidence            56799999984  677777764468999999999999999999999886  4 6899999996432              


Q ss_pred             -C--------C-CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          189 -P--------V-SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       189 -~--------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                       +        . ..++||+|+...-     .....+..+.+.|+|||++++-+
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence             1        1 2378999998752     22356677889999999996533

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.05  E-value=5.4e-10  Score=100.68  Aligned_cols=97  Identities=24%  Similarity=0.297  Sum_probs=75.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ++.+|||+|||+|.++..+++.  ...+++|+|+++.+++.|           .++.++++|+..... .+.||+|+++-
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~-~~~fD~Ii~NP  106 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP-GEAFDLILGNP  106 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC-SSCEEEEEECC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc-cCCCCEEEECc
Confidence            5679999999999999999874  567999999999998776           278999999987653 47899999951


Q ss_pred             cc---cC-------ccc-------------------HHHHHHHHHHcccCCcEEEEEecc
Q 022248          203 VL---CS-------VKD-------------------VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       203 ~l---~~-------~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      -.   ..       +.+                   ...+++++.++|+|||+++++.+.
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            11   11       111                   125689999999999999998854

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.04  E-value=1.5e-09  Score=101.07  Aligned_cols=101  Identities=14%  Similarity=0.179  Sum_probs=76.5

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  199 (300)
                      +..+|||||||+|.+....++   ..+  .+|++||.++ +...+++..+.+++. ++|+++.+|++++..+ +++|+||
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-CeEEEEeCcceeccCC-cccCEEE
Confidence            346799999999988444333   223  3789999997 667888888888886 7999999999998765 7899999


Q ss_pred             EcccccCc--ccHHHHHHHHHHcccCCcEEE
Q 022248          200 GTLVLCSV--KDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       200 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~  228 (300)
                      +=+.=..+  +....++....|.|||||.++
T Consensus       434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            73321111  334567888899999999864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.04  E-value=2.6e-10  Score=100.93  Aligned_cols=101  Identities=14%  Similarity=0.016  Sum_probs=81.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc---------------CCCCCCEEEEecccCcC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA---------------GLPLTNFKFLQAVGEAI  188 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~---------------~~~~~~~~~~~~d~~~~  188 (300)
                      ++.+|||+|||+|.++..++.. .+.+|+++|+++.+++.++++++..               ++.  +++++.+|+..+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~--~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK--TIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS--EEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC--ceEEEcCcHHHH
Confidence            5789999999999999999875 4568999999999999999999988               663  599999998665


Q ss_pred             C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          189 P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       189 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      . ...+.||+|++.- .   .....++..+.+.|||||.+++..
T Consensus       125 ~~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            2 1135799999532 1   233567899999999999887765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.02  E-value=1.3e-09  Score=91.29  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---  191 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---  191 (300)
                      ..+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++..    .++++++.+|+.+++++   
T Consensus        19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGGSC
T ss_pred             HHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHHhc
Confidence            33444443 46789999999999999999875 47999999999999999998754    14899999999988764   


Q ss_pred             -CCcccEEEE
Q 022248          192 -DASVDAVVG  200 (300)
Q Consensus       192 -~~~~D~v~~  200 (300)
                       ++.|| |++
T Consensus        94 ~~~~~~-vv~  102 (255)
T 3tqs_A           94 TDKPLR-VVG  102 (255)
T ss_dssp             CSSCEE-EEE
T ss_pred             cCCCeE-EEe
Confidence             35688 444

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.00  E-value=7.7e-10  Score=97.96  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=82.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCC-EEEEecccCcCC--CCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTN-FKFLQAVGEAIP--VSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D~v~  199 (300)
                      ++.+|||++||+|.++..++.. .+ .+|+++|+++.+++.++++++.+++. .+ ++++.+|+..+.  ...+.||+|+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-EDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            5789999999999999999874 23 68999999999999999999999985 34 999999986542  2246799999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.-    ......++..+.+.|+|||++++..
T Consensus       131 lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            854    1223457889999999999888766

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.96  E-value=1.9e-09  Score=94.00  Aligned_cols=157  Identities=10%  Similarity=0.083  Sum_probs=102.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-----------------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec---c
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-----------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA---V  184 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---d  184 (300)
                      ...+|+|+||++|..+..+...                 +..+++..|+.......+.+.+.... ...+..|+.+   .
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGS  129 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESC
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchh
Confidence            4578999999999777655432                 34789999998888887776653211 0002244443   4


Q ss_pred             cCcCCCCCCcccEEEEcccccCccc---------------------------------HHHHHHHHHHcccCCcEEEEEe
Q 022248          185 GEAIPVSDASVDAVVGTLVLCSVKD---------------------------------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       185 ~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +..-.|+++++|+|+++.++||+.+                                 ...+|+..++.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            4445788999999999999999743                                 2235888899999999999987


Q ss_pred             cccCCCc-----------hHHHHHHHhhhhh--h-----h-hhcCCcccchHHHHHHHhcCC-cEEEEeee
Q 022248          232 HVAAKDG-----------TFLKFWQNVVDPL--Q-----Q-IVSDGCHLTRQTGNNISEAGF-SSVELGNA  282 (300)
Q Consensus       232 ~~~~~~~-----------~~~~~~~~~~~~~--~-----~-~~~~~~~~~~~~~~~l~~aGf-~~v~~~~~  282 (300)
                      .......           .+...|+.+....  .     . .....+.+.+|++.++++.|. ++..++..
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~  280 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS  280 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence            6554431           1222332222111  0     0 111235678999999999855 76666543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.95  E-value=8.4e-08  Score=81.18  Aligned_cols=108  Identities=20%  Similarity=0.270  Sum_probs=84.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHc--C-CCCCCEEEEecccCcC-CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--G-LPLTNFKFLQAVGEAI-PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~~d~~~~-~~~~~~~D~v  198 (300)
                      +.+++||=||.|.|..++.+++.. ..+++.+|+++.+++.+++.+...  + +..++++++.+|+... .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            567899999999999999999854 468999999999999999987542  2 3347999999999764 3456789999


Q ss_pred             EEcccccCcc----cHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +....-..-+    --..+++.+++.|+|||+++.-.
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            9753211111    11468899999999999999854

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=1.9e-09  Score=90.91  Aligned_cols=80  Identities=13%  Similarity=0.210  Sum_probs=63.8

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC-
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA-  193 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-  193 (300)
                      ..+++.+. .++ +|||||||+|.++..+++. +.+++++|+++.+++.+++++..     .+++++.+|+.++++++. 
T Consensus        37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~~~~~  109 (271)
T 3fut_A           37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPWEEVP  109 (271)
T ss_dssp             HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCGGGSC
T ss_pred             HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCChhhcc
Confidence            34444443 456 9999999999999999975 46999999999999999988641     489999999998877543 


Q ss_pred             cccEEEEcc
Q 022248          194 SVDAVVGTL  202 (300)
Q Consensus       194 ~~D~v~~~~  202 (300)
                      .+|.|+++.
T Consensus       110 ~~~~iv~Nl  118 (271)
T 3fut_A          110 QGSLLVANL  118 (271)
T ss_dssp             TTEEEEEEE
T ss_pred             CccEEEecC
Confidence            688877654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.94  E-value=5.2e-09  Score=87.32  Aligned_cols=88  Identities=16%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .++.+|||||||+|.++..+++.+..+++++|+++.+++.++++    .  ..+++++.+|+.++++++.
T Consensus        20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~--~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G--DERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C--CTTEEEECSCTTTCCGGGS
T ss_pred             HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c--CCCeEEEEcchhhCChhHc
Confidence            334444443 46789999999999999999976457999999999999999876    1  2489999999999876542


Q ss_pred             cccEEEEcccccCcc
Q 022248          194 SVDAVVGTLVLCSVK  208 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~  208 (300)
                      .-+.++..+..+++.
T Consensus        94 ~~~~~vv~NlPy~i~  108 (249)
T 3ftd_A           94 GKELKVVGNLPYNVA  108 (249)
T ss_dssp             CSSEEEEEECCTTTH
T ss_pred             cCCcEEEEECchhcc
Confidence            113455555555553

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.92  E-value=5e-09  Score=97.64  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=74.1

Q ss_pred             CCeEEEECCCCChhHHHhHh-----C---------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          126 AKKVLEIGIGTGPNLKYYAA-----D---------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-----~---------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      ...|||||||+|.+....++     .         ...+|++||.++.++..++.... +++. ++|+++.+|++++..+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-RRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-TCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-CeEEEEeCchhhcccc
Confidence            56899999999999643221     1         23499999999987766665554 6775 6799999999998653


Q ss_pred             -----CCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEE
Q 022248          192 -----DASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       192 -----~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~  228 (300)
                           .+.+|+||+-+.=...  +-...+|..+.+.|||||.++
T Consensus       488 ~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence                 5789999985442222  223467788889999999765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=1.7e-09  Score=92.55  Aligned_cols=76  Identities=13%  Similarity=0.249  Sum_probs=64.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CC---CCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VS---DASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~---~~~~D~  197 (300)
                      .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.|+++++..+   .+++++++|+..++  +.   .+.||.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~g~~~~D~  101 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGIEKVDG  101 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence            46789999999999999999875 36799999999999999999987765   48999999998764  11   157999


Q ss_pred             EEEcc
Q 022248          198 VVGTL  202 (300)
Q Consensus       198 v~~~~  202 (300)
                      |++..
T Consensus       102 Vl~D~  106 (301)
T 1m6y_A          102 ILMDL  106 (301)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.88  E-value=2.2e-09  Score=90.06  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH-------HHHHHHHHHHHHcCCCCCCEEEEecccCcC-C-CCC--C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR-------KMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD--A  193 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~--~  193 (300)
                      ++.+|||+|||+|.++..++.. +.+|+++|+++       .+++.|+++++..++. .+++++.+|++++ + +++  +
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEEESCHHHHHHHHHHHHC
T ss_pred             CcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEEECCHHHHHHhhhccCC
Confidence            5679999999999999999875 66999999999       9999998887666543 3599999999774 3 343  6


Q ss_pred             cccEEEEccccc
Q 022248          194 SVDAVVGTLVLC  205 (300)
Q Consensus       194 ~~D~v~~~~~l~  205 (300)
                      +||+|++.-...
T Consensus       161 ~fD~V~~dP~~~  172 (258)
T 2r6z_A          161 KPDIVYLDPMYP  172 (258)
T ss_dssp             CCSEEEECCCC-
T ss_pred             CccEEEECCCCC
Confidence            899999865443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.87  E-value=1.6e-08  Score=96.53  Aligned_cols=108  Identities=15%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-------------------------------------------CCceEEEEcCCHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-------------------------------------------TDVQVLGVDPNRKM  160 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~~~giD~s~~~  160 (300)
                      .++..|||.+||+|.++..++..                                           ....++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            46779999999999998877641                                           12579999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCcccEEEEc--ccccC--cccHHHHH---HHHHHcccCCcEEEEEe
Q 022248          161 EKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT--LVLCS--VKDVDMTL---QEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       161 ~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~--~~l~~--~~~~~~~l---~~~~~~LkpgG~l~~~~  231 (300)
                      ++.|++++...|+. ..++|.++|+.++  |...+.||+|+++  +....  -.+...++   .++.+.+.|||.++++.
T Consensus       269 v~~A~~N~~~agv~-~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt  347 (703)
T 3v97_A          269 IQRARTNARLAGIG-ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS  347 (703)
T ss_dssp             HHHHHHHHHHTTCG-GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHcCCC-CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99999999999985 4699999999887  3334489999997  32211  12333444   44445556899999976


Q ss_pred             c
Q 022248          232 H  232 (300)
Q Consensus       232 ~  232 (300)
                      .
T Consensus       348 ~  348 (703)
T 3v97_A          348 A  348 (703)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.86  E-value=2.3e-09  Score=89.73  Aligned_cols=128  Identities=19%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--------CC-----CceEEEEcCCH---HHHH-----------HHHHHHHHc-----
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--------DT-----DVQVLGVDPNR---KMEK-----------YAQTAAVAA-----  171 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~~~giD~s~---~~~~-----------~a~~~~~~~-----  171 (300)
                      .+..+|||||+|+|..+..+++        .+     ..+++++|..+   +.+.           .|++.+...     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            3567999999999998877543        22     25899999776   4444           455554431     


Q ss_pred             -----CCC--CCCEEEEecccCc-CCCCC----CcccEEEEc-ccccCccc--HHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          172 -----GLP--LTNFKFLQAVGEA-IPVSD----ASVDAVVGT-LVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       172 -----~~~--~~~~~~~~~d~~~-~~~~~----~~~D~v~~~-~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                           .+.  ..+++++.+|+.+ ++..+    ..||+|+.. +.....++  ...+++.+.++|+|||+|+...  .. 
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys--aa-  215 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT--SA-  215 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC--CB-
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe--CC-
Confidence                 011  1367789999866 44322    279999984 33332333  2578999999999999988633  11 


Q ss_pred             CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          237 DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                                                ..+++.|.++||++....
T Consensus       216 --------------------------~~vrr~L~~aGF~v~~~~  233 (257)
T 2qy6_A          216 --------------------------GFVRRGLQEAGFTMQKRK  233 (257)
T ss_dssp             --------------------------HHHHHHHHHHTEEEEEEC
T ss_pred             --------------------------HHHHHHHHHCCCEEEeCC
Confidence                                      156788889999977654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.84  E-value=3.6e-09  Score=87.85  Aligned_cols=121  Identities=16%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||+|.++..+++. ....+.|+|+...+....... ...+   .++..+..+++...+.++.||+|+|..
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG---WNIITFKDKTDIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT---GGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC---CCeEEEeccceehhcCCCCccEEEecC
Confidence            56789999999999999987764 344678888874431000000 0001   144556666655667788999999987


Q ss_pred             ccc----CcccHH--HHHHHHHHcccCC-cEEEEEecc--cCCCchHHHHHHHhh
Q 022248          203 VLC----SVKDVD--MTLQEVRRVLKPG-GIYLFVEHV--AAKDGTFLKFWQNVV  248 (300)
Q Consensus       203 ~l~----~~~~~~--~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~  248 (300)
                      +.+    .++...  .+++.+.++|+|| |.|++-.+.  ......+...++..+
T Consensus       149 apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F  203 (277)
T 3evf_A          149 GESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRF  203 (277)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             ccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhc
Confidence            666    222111  3468889999999 999997766  332233444444444

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.83  E-value=5.2e-09  Score=92.92  Aligned_cols=74  Identities=14%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CC-CCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PV-SDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~-~~~~~D~v~~  200 (300)
                      ++.+|||+|||+|..+..+++. +.+|+++|+++.+++.|+++++..  ++  .+++++++|+.+. +. +++.||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECcHHHhhhhccCCCceEEEE
Confidence            4789999999999999998864 679999999999999999999887  76  4899999999874 32 2358999998


Q ss_pred             c
Q 022248          201 T  201 (300)
Q Consensus       201 ~  201 (300)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.80  E-value=7.6e-08  Score=88.88  Aligned_cols=124  Identities=18%  Similarity=0.094  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhh--cCCCCeEEEECCCCChhHHHhHhC----CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc
Q 022248          111 VAGYKSQLFDNL--RGKAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (300)
Q Consensus       111 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d  184 (300)
                      +...+.+++...  +.++.+|||.+||+|.++..+++.    ....++|+|+++.+++.|+.++...++..+++.+..+|
T Consensus       205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD  284 (542)
T 3lkd_A          205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD  284 (542)
T ss_dssp             HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred             HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc
Confidence            444444444422  135679999999999998888763    35689999999999999999988777754578899999


Q ss_pred             cCcC--C-CCCCcccEEEEc--ccccC-----------------cc---c-HHHHHHHHHHccc-CCcEEEEEeccc
Q 022248          185 GEAI--P-VSDASVDAVVGT--LVLCS-----------------VK---D-VDMTLQEVRRVLK-PGGIYLFVEHVA  234 (300)
Q Consensus       185 ~~~~--~-~~~~~~D~v~~~--~~l~~-----------------~~---~-~~~~l~~~~~~Lk-pgG~l~~~~~~~  234 (300)
                      ....  | .....||+|+++  +...+                 ++   + .-.+++.+.+.|+ |||++.++.+..
T Consensus       285 tL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          285 TLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             TTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             eecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            8765  3 456789999985  11110                 10   0 1247899999999 999999988543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.79  E-value=8.3e-09  Score=95.56  Aligned_cols=111  Identities=14%  Similarity=0.013  Sum_probs=82.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC----C---------------CceEEEEcCCHHHHHHHHHHHHHcCCCC---CCEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD----T---------------DVQVLGVDPNRKMEKYAQTAAVAAGLPL---TNFKFL  181 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~~~giD~s~~~~~~a~~~~~~~~~~~---~~~~~~  181 (300)
                      .++.+|||.|||+|.++..+++.    .               ...++|+|+++.+++.|+.++...++..   .++.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            35679999999999998887652    1               2479999999999999999887766541   026788


Q ss_pred             ecccCcCC-CCCCcccEEEEcccccCcc-------------c-HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          182 QAVGEAIP-VSDASVDAVVGTLVLCSVK-------------D-VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       182 ~~d~~~~~-~~~~~~D~v~~~~~l~~~~-------------~-~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++|....+ ...+.||+|+++--.....             + ...++.++.+.|||||++.++.+..
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            88876543 3457899999863222111             1 2368999999999999999987543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.79  E-value=1.5e-08  Score=85.82  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhCCC---ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD---VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~---~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      .+++.+. .++.+|||||||+|.++..+++...   .+++++|+++.+++.++++.  .    ++++++++|+.+++++
T Consensus        33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~----~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G----ELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G----GGEEEEESCGGGCCGG
T ss_pred             HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C----CCcEEEECChhcCChh
Confidence            3444443 4678999999999999999987432   33999999999999999883  1    4899999999998764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.74  E-value=9.6e-09  Score=85.81  Aligned_cols=68  Identities=13%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCce--EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQ--VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~--~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      .+++.+. .++.+|||||||+|.++. +..  +.+  ++++|+++.+++.+++++...    ++++++.+|+..++++
T Consensus        12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCHH
T ss_pred             HHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCHH
Confidence            3444433 467899999999999999 754  346  999999999999998876432    4899999999988754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.67  E-value=5.6e-08  Score=89.92  Aligned_cols=110  Identities=17%  Similarity=0.090  Sum_probs=80.9

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhC----------------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAAD----------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  186 (300)
                      .+...+|||.+||+|.++..+++.                ....++|+|+++.+++.|+.++...++. .++.+.++|..
T Consensus       242 ~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~~i~i~~gDtL  320 (544)
T 3khk_A          242 EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-FNFGKKNADSF  320 (544)
T ss_dssp             CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-CBCCSSSCCTT
T ss_pred             hcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-cccceeccchh
Confidence            334459999999999988877531                0468999999999999999998887775 24445778865


Q ss_pred             cCC-CCCCcccEEEEcc--cccC-----------------------cc----cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          187 AIP-VSDASVDAVVGTL--VLCS-----------------------VK----DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       187 ~~~-~~~~~~D~v~~~~--~l~~-----------------------~~----~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..+ +.+..||+|+++=  ....                       ++    ..-.+++.+.+.|+|||++.++.+.
T Consensus       321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred             cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence            543 4567899999842  2110                       11    0125789999999999999998753

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.59  E-value=3e-08  Score=82.42  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+|||.|.++..++.. ....++|+|+...+...+... ...+   .++..+..+++...++.+.+|+|+|..
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~DvVLSDm  164 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG---WNLIRFKDKTDVFNMEVIPGDTLLCDI  164 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT---GGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC---CceEEeeCCcchhhcCCCCcCEEEecC
Confidence            57779999999999999988753 445688999976532221100 0001   133333333333345668999999988


Q ss_pred             ccc----CcccHH--HHHHHHHHcccCC--cEEEEEecc
Q 022248          203 VLC----SVKDVD--MTLQEVRRVLKPG--GIYLFVEHV  233 (300)
Q Consensus       203 ~l~----~~~~~~--~~l~~~~~~Lkpg--G~l~~~~~~  233 (300)
                      +..    .++...  .++.-+.++|+||  |.|++-.+.
T Consensus       165 ApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          165 GESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            776    111111  3577778999999  999998876

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.59  E-value=1.6e-07  Score=82.04  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=79.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCC---CCCEEEEecccCcC----CCCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA---GLP---LTNFKFLQAVGEAI----PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~---~~~---~~~~~~~~~d~~~~----~~~~~  193 (300)
                      .++++||=||.|.|..++.+++.+..+++.+|+++.+++.+++.+...   .+.   .++++++.+|+...    .-..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            456899999999999999999866678999999999999999875321   111   23588999988543    12346


Q ss_pred             cccEEEEcccccC-------ccc---HHHHHHHHHHcccCCcEEEEEe
Q 022248          194 SVDAVVGTLVLCS-------VKD---VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       194 ~~D~v~~~~~l~~-------~~~---~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .||+|+....-..       ...   ...+++.+++.|+|||+++.-.
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            7999997532211       111   1467899999999999988743

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.58  E-value=4.9e-08  Score=81.57  Aligned_cols=96  Identities=11%  Similarity=0.064  Sum_probs=66.0

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC--------CCCCCEEEEecccCcC-CCCCCcccE
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVGEAI-PVSDASVDA  197 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~--------~~~~~~~~~~~d~~~~-~~~~~~~D~  197 (300)
                      .+|||+|||+|..+..++.. +.+|+++|.++.+.+.+++.++...        +. .+++++++|+.++ +...+.||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEEECCHHHHHHhCcccCCE
Confidence            79999999999999999875 5589999999988777766654321        11 3799999998763 322347999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGG  225 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG  225 (300)
                      |++.-...+- .....+++..++|++.+
T Consensus       168 V~lDP~y~~~-~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          168 VYLDPMFPHK-QKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             EEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred             EEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence            9987555442 22244556666666644

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.57  E-value=4.2e-07  Score=76.74  Aligned_cols=107  Identities=15%  Similarity=0.079  Sum_probs=82.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC------CCceEEEEcCCHH--------------------------HHHHHHHHHHHc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRK--------------------------MEKYAQTAAVAA  171 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~~giD~s~~--------------------------~~~~a~~~~~~~  171 (300)
                      ..++.|||+|+..|..+..++..      .+.+++++|..+.                          .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            35679999999999988887652      3678999996421                          467788999998


Q ss_pred             CCCCCCEEEEecccCc-CC-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          172 GLPLTNFKFLQAVGEA-IP-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       172 ~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ++..++++++.+++.+ ++ +++++||+|+...-.  .......++.+...|+|||++++-+.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            8744699999999965 44 445789999987632  23445778999999999998888553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.47  E-value=8.1e-07  Score=84.22  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=75.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCC----CceEEEEcCCHHHHHHH--HHHHHHcCCC--CCCEEEEecccCcC-CCCCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYA--QTAAVAAGLP--LTNFKFLQAVGEAI-PVSDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~~giD~s~~~~~~a--~~~~~~~~~~--~~~~~~~~~d~~~~-~~~~~~~  195 (300)
                      ++.+|||.|||+|.++..+++..    ..+++|+|+++.+++.|  +..+....+.  .....+...|+... +...+.|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            57899999999999999988643    35799999999999999  4443321111  12335556666553 2345789


Q ss_pred             cEEEEcccc--c-Ccc-------------------------c-HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          196 DAVVGTLVL--C-SVK-------------------------D-VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       196 D~v~~~~~l--~-~~~-------------------------~-~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |+|+++=-.  . ...                         + ...+++.+.+.|+|||++.++.+..
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            999985222  0 000                         1 2346888999999999999988543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.45  E-value=3.8e-06  Score=72.98  Aligned_cols=122  Identities=11%  Similarity=0.073  Sum_probs=81.0

Q ss_pred             cCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..++.++||+||++|.++..+++. +..|++||+.+ +-.....        .++|+++.+|+.....+.+.||+|+|..
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~~l~~--------~~~V~~~~~d~~~~~~~~~~~D~vvsDm  278 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQSLMD--------TGQVTWLREDGFKFRPTRSNISWMVCDM  278 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCHHHHT--------TTCEEEECSCTTTCCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cChhhcc--------CCCeEEEeCccccccCCCCCcCEEEEcC
Confidence            458899999999999999999875 56999999864 2222111        2589999999988876778899999966


Q ss_pred             cccCcccHHHHHHHHHHcccCC---cEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPG---GIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      +.    ++...+..+.++|..+   +.++.+-...  .. ....+...              ...+.+.|+..||.
T Consensus       279 ~~----~p~~~~~l~~~wl~~~~~~~aI~~lKL~m--k~-~~~~l~~~--------------~~~i~~~l~~~g~~  333 (375)
T 4auk_A          279 VE----KPAKVAALMAQWLVNGWCRETIFNLKLPM--KK-RYEEVSHN--------------LAYIQAQLDEHGIN  333 (375)
T ss_dssp             SS----CHHHHHHHHHHHHHTTSCSEEEEEEECCS--SS-HHHHHHHH--------------HHHHHHHHHHTTCC
T ss_pred             CC----ChHHhHHHHHHHHhccccceEEEEEEecc--cc-hHHHHHHH--------------HHHHHHHHHhcCcc
Confidence            54    3444555555555443   5544443221  11 11222111              12677888899997

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.32  E-value=1.2e-06  Score=73.19  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=64.3

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----  189 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----  189 (300)
                      +.++++.+. .++..+||.+||.|..+..+++. +.+++|+|.++.+++.|++ +..     +++.++.+++..++    
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHH
Confidence            344444444 46789999999999999999987 7799999999999999988 532     48999999998763    


Q ss_pred             -CCCCcccEEEEcc
Q 022248          190 -VSDASVDAVVGTL  202 (300)
Q Consensus       190 -~~~~~~D~v~~~~  202 (300)
                       ...+.+|.|++..
T Consensus        84 ~~g~~~vDgIL~DL   97 (285)
T 1wg8_A           84 ALGVERVDGILADL   97 (285)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             HcCCCCcCEEEeCC
Confidence             1235799999743

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.30  E-value=3.5e-06  Score=73.62  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=85.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCC----CCCEEEEecccCcCC-CCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQAVGEAIP-VSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~~D~  197 (300)
                      .++.+|||+++|.|.-+.+|++. ....++++|+++.-++.++++++..+..    ..++.+...|...++ ...+.||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            57889999999999998888874 3357999999999999999999876642    247888888887763 34578999


Q ss_pred             EEE----cc----cccCccc----------------HHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          198 VVG----TL----VLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       198 v~~----~~----~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      |++    +.    .+..-++                ..++|....+.|||||+|+.++....+
T Consensus       227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~  289 (359)
T 4fzv_A          227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH  289 (359)
T ss_dssp             EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred             EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence            995    22    1111111                135788999999999999998755433

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.30  E-value=1.8e-07  Score=100.20  Aligned_cols=147  Identities=20%  Similarity=0.151  Sum_probs=71.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC------CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D  196 (300)
                      .+..+|||||.|+|..+..+.+..      ..+++..|+|+...+.|+++++..     ++....-|.... ++..+.||
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-----di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-----HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-----TEEEECCCSSCCCC-----CC
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-----ccccccccccccccCCCCcee
Confidence            356799999999998766654421      347999999998888888776543     233322233232 34557899


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCC-CchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK-DGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      +|++.+++|..++....+.+++++|||||++++.+..... .+....++...     ......+.+.++|.++|..+||.
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~-----~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSP-----EQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEEC-------------------------------CTTTTSSTTTTEE
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccc-----cccCCcccCHHHHHHHHHhCCCc
Confidence            9999999998888899999999999999999997743210 01111111100     00112345667899999999999


Q ss_pred             EEEEe
Q 022248          276 SVELG  280 (300)
Q Consensus       276 ~v~~~  280 (300)
                      .+.+.
T Consensus      1389 ~~~~~ 1393 (2512)
T 2vz8_A         1389 LVALK 1393 (2512)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            87664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.28  E-value=1.9e-06  Score=72.12  Aligned_cols=120  Identities=14%  Similarity=0.065  Sum_probs=73.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+|||+||++|.++..+++. ....++|+|+...+...... ....+   .++.....+.....+..+.+|+|+|..
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~---~~iv~~~~~~di~~l~~~~~DlVlsD~  155 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG---WNIVKFKDKSNVFTMPTEPSDTLLCDI  155 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT---GGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC---CceEEeecCceeeecCCCCcCEEeecC
Confidence            67889999999999999999874 34478899987532110000 00000   122222332232334567899999977


Q ss_pred             cccCccc----H---HHHHHHHHHcccCC-cEEEEEecc--cCCCchHHHHHHHhh
Q 022248          203 VLCSVKD----V---DMTLQEVRRVLKPG-GIYLFVEHV--AAKDGTFLKFWQNVV  248 (300)
Q Consensus       203 ~l~~~~~----~---~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~~  248 (300)
                      +.. ...    .   ..++.-+.++|+|| |.|++-.+.  ......+...++..+
T Consensus       156 APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F  210 (300)
T 3eld_A          156 GES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRF  210 (300)
T ss_dssp             CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHH
T ss_pred             cCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhC
Confidence            666 321    1   23477778999999 999998776  333333444444444

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.25  E-value=1.8e-06  Score=64.53  Aligned_cols=86  Identities=12%  Similarity=0.105  Sum_probs=59.1

Q ss_pred             CCCeEEEECCCCC-hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC-CcccEEEEcc
Q 022248          125 KAKKVLEIGIGTG-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (300)
Q Consensus       125 ~~~~vLDiGcG~G-~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~  202 (300)
                      ++.+|||||||.| ..+..|++..+..|+++|+++.+++                 +++.|+.+..... +.||+|.+..
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIYsir   97 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIYSIR   97 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEEEcC
Confidence            5679999999999 5888888757889999999996543                 7888886643211 4799998765


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      -..   +....+.++.+  +-|.-+++...
T Consensus        98 PP~---El~~~i~~lA~--~v~adliI~pL  122 (153)
T 2k4m_A           98 PPA---EIHSSLMRVAD--AVGARLIIKPL  122 (153)
T ss_dssp             CCT---TTHHHHHHHHH--HHTCEEEEECB
T ss_pred             CCH---HHHHHHHHHHH--HcCCCEEEEcC
Confidence            333   33334444444  23566666553

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.05  E-value=0.00018  Score=62.28  Aligned_cols=149  Identities=10%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCC-------------------CCCCEEEEec
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGL-------------------PLTNFKFLQA  183 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~  183 (300)
                      .+...|+.+|||.......+... .+..++-||. +.+++.-++.+...+.                   ..++..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35678999999999988888753 5778888888 7777777777665420                   1257899999


Q ss_pred             ccCcCCC---------CCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccC---CCchHHHHHHHhhh
Q 022248          184 VGEAIPV---------SDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAA---KDGTFLKFWQNVVD  249 (300)
Q Consensus       184 d~~~~~~---------~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~~~  249 (300)
                      |+.+...         ..+...++++-.++.+++.  ...+++.+.+.. |+|.+++.+....   .+ .+...+...+.
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~-~fg~~m~~~l~  252 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND-RFGAIMQSNLK  252 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC-CHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc-hHHHHHHHHhh
Confidence            9876321         2356788889899999854  356788888876 7888887776544   22 22222222221


Q ss_pred             h-hhh-hh-cCCcccchHHHHHHHhcCCc
Q 022248          250 P-LQQ-IV-SDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       250 ~-~~~-~~-~~~~~~~~~~~~~l~~aGf~  275 (300)
                      . .+. .. ...+.+.++..+.|.++||+
T Consensus       253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            1 111 11 11345788899999999997

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.04  E-value=5.4e-05  Score=63.12  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+||++|.++...+...+ ..|+|+|+-..-.+.-+ ..+..++  .-|.|+.+ |+..++-  ..+|+|+|.
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w--~lV~~~~~~Dv~~l~~--~~~D~ivcD  167 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW--NIVTMKSGVDVFYRPS--ECCDTLLCD  167 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG--GGEEEECSCCTTSSCC--CCCSEEEEC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC--cceEEEeccCHhhCCC--CCCCEEEEE
Confidence            5778999999999999997776444 46999998664110000 0001122  24788887 8766653  669999997


Q ss_pred             ccccCcccH-------HHHHHHHHHcccCC-cEEEEEeccc
Q 022248          202 LVLCSVKDV-------DMTLQEVRRVLKPG-GIYLFVEHVA  234 (300)
Q Consensus       202 ~~l~~~~~~-------~~~l~~~~~~Lkpg-G~l~~~~~~~  234 (300)
                      -. +.-+++       ..+|+-+.++|++| |-|++-.+.+
T Consensus       168 ig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          168 IG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             Cc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            66 444433       23567778899998 8888877655

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.00  E-value=3.5e-05  Score=63.09  Aligned_cols=101  Identities=16%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             hcCCCCeEEEECCCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCC--CC---EEEEec-ccCcCCCCCCc
Q 022248          122 LRGKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPL--TN---FKFLQA-VGEAIPVSDAS  194 (300)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~--~~---~~~~~~-d~~~~~~~~~~  194 (300)
                      +.+++.+|||+||+.|.++..+++..+. .+.|.++.... .       ......  ..   +.|+.+ |+..++  ...
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~  139 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVDVFYKP--SEI  139 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCCGGGSC--CCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCCccCCC--CCC
Confidence            4468999999999999999998875222 33444433220 0       001100  12   355556 887653  458


Q ss_pred             ccEEEEcccccCcc----cHH---HHHHHHHHcccCCc-EEEEEecc
Q 022248          195 VDAVVGTLVLCSVK----DVD---MTLQEVRRVLKPGG-IYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~----~~~---~~l~~~~~~LkpgG-~l~~~~~~  233 (300)
                      +|+|+|..+.. -.    |..   .+|.-+.++|+||| .|++-.+.
T Consensus       140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            99999977654 32    221   25667779999999 99998876

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.90  E-value=0.00011  Score=67.73  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--------------CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .++.+|+|.+||+|.++..+.+.              ....++|+|+++.+...|+.++--.+..  ...+..+|....+
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~--~~~I~~~dtL~~~  293 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE--YPRIDPENSLRFP  293 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS--CCEEECSCTTCSC
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc--cccccccccccCc
Confidence            35679999999999998776541              1246999999999999999887776764  3456777765543


Q ss_pred             C----CCCcccEEEEccccc--Cc-------------cc-HHHHHHHHHHccc-------CCcEEEEEecc
Q 022248          190 V----SDASVDAVVGTLVLC--SV-------------KD-VDMTLQEVRRVLK-------PGGIYLFVEHV  233 (300)
Q Consensus       190 ~----~~~~~D~v~~~~~l~--~~-------------~~-~~~~l~~~~~~Lk-------pgG~l~~~~~~  233 (300)
                      .    ....||+|+++=-..  ..             .+ ...+++.+.+.||       |||++.++.+.
T Consensus       294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            2    235799999853221  10             01 1346788888886       79999998864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.87  E-value=4.6e-05  Score=61.46  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+||++|.++...+...+ ..|+|+|+-..-.+.- ...+..|+  ..++|+.+ |+..++-  ..+|.|+|.
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw--n~v~fk~gvDv~~~~~--~~~DtllcD  151 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW--NIVKLMSGKDVFYLPP--EKCDTLLCD  151 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT--TSEEEECSCCGGGCCC--CCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc--CceEEEeccceeecCC--ccccEEEEe
Confidence            5778999999999999997776434 4699999866432100 00122334  37899999 8766642  679999997


Q ss_pred             ccccCcccH-------HHHHHHHHHcccCCcEEEEEecccCC
Q 022248          202 LVLCSVKDV-------DMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       202 ~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      ..-. -+++       ..+|+-+.++|++ |-+++-.+.+..
T Consensus       152 IgeS-s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          152 IGES-SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             CCCC-CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             cCCC-CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            6552 2222       2367777899998 788887665543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.84  E-value=4.3e-05  Score=65.27  Aligned_cols=58  Identities=21%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~  171 (300)
                      .+...++.....++..|||++||+|..+..++. .+.+++|+|+++.+++.|+++++..
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            344555555556788999999999999988875 5679999999999999999998765

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.81  E-value=0.0028  Score=54.15  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=97.8

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CCCCEEEEecccCcCC---------CCCCcc
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIP---------VSDASV  195 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~---------~~~~~~  195 (300)
                      ...|+++|||-=.....+....+..++-|| .+.+++..++.+...+. ..++..++.+|+.+ .         +.....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence            357999999988776666422347899999 58899998888876442 23578889999875 2         222345


Q ss_pred             cEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHH----Hhhhhhh-----hhhcC-Cccc-c
Q 022248          196 DAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQ----NVVDPLQ-----QIVSD-GCHL-T  262 (300)
Q Consensus       196 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~-~~~~-~  262 (300)
                      =++++-.+++++++  ...+++.+...+.||+.+++....... ........    +.+....     ....- .+.+ .
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  259 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG-DEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENR  259 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC-SHHHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC-cchhHHHHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence            57778889999864  356889998988899988886644322 11111112    1121111     00111 1224 6


Q ss_pred             hHHHHHHHhcCCcEEEE
Q 022248          263 RQTGNNISEAGFSSVEL  279 (300)
Q Consensus       263 ~~~~~~l~~aGf~~v~~  279 (300)
                      +++.+.|.+.||+.+..
T Consensus       260 ~~~~~~f~~~G~~~~~~  276 (310)
T 2uyo_A          260 AVVADWLNRHGWRATAQ  276 (310)
T ss_dssp             CCHHHHHTTTTEEEEEE
T ss_pred             HHHHHHHHHCcCccccC
Confidence            79999999999998743

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.69  E-value=0.00036  Score=58.16  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CCCCeEEEECC------CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccE
Q 022248          124 GKAKKVLEIGI------GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGc------G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  197 (300)
                      +.+.+|||+|+      -.|.+...-....+..++++|+.+-..           .  .. .++++|...+.. .+.||+
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------d--a~-~~IqGD~~~~~~-~~k~DL  172 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------D--AD-STLIGDCATVHT-ANKWDL  172 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------S--SS-EEEESCGGGEEE-SSCEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------C--CC-eEEEcccccccc-CCCCCE
Confidence            57899999996      556532221112335999999977321           0  12 459999766543 478999


Q ss_pred             EEEcccccCc-----cc------HHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          198 VVGTLVLCSV-----KD------VDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       198 v~~~~~l~~~-----~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                      |++..+...-     +.      .+.++.-+.++|+|||.|++-.+....
T Consensus       173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             EEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            9986543321     11      245677788899999999998765443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.63  E-value=0.0002  Score=60.80  Aligned_cols=128  Identities=15%  Similarity=0.194  Sum_probs=76.5

Q ss_pred             CCCeEEEECCCCChhHHHhHh-----CCC--ceEEEEcCCH--------H-HHHHHHHHHHHcC-CCCC--CEEEEeccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-----DTD--VQVLGVDPNR--------K-MEKYAQTAAVAAG-LPLT--NFKFLQAVG  185 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-----~~~--~~~~giD~s~--------~-~~~~a~~~~~~~~-~~~~--~~~~~~~d~  185 (300)
                      +.-+|||+|-|+|........     .+.  .+++.+|..+        . .-+..+....... ....  .+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            456899999999975433221     233  3566666421        1 1111222222211 1112  345677887


Q ss_pred             Cc-CC-CCCCcccEEEEcc-cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcc
Q 022248          186 EA-IP-VSDASVDAVVGTL-VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCH  260 (300)
Q Consensus       186 ~~-~~-~~~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (300)
                      .+ ++ +.+..||+|+... +...-|++  ..+++.++++++|||.|....  ..                         
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt--aa-------------------------  228 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS--SS-------------------------  228 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC--CC-------------------------
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe--Cc-------------------------
Confidence            54 33 4455799999743 22222333  578999999999999887633  11                         


Q ss_pred             cchHHHHHHHhcCCcEEEEee
Q 022248          261 LTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       261 ~~~~~~~~l~~aGf~~v~~~~  281 (300)
                        ..++..|+++||++....-
T Consensus       229 --g~VRR~L~~aGF~V~k~~G  247 (308)
T 3vyw_A          229 --LSVRKSLLTLGFKVGSSRE  247 (308)
T ss_dssp             --HHHHHHHHHTTCEEEEEEC
T ss_pred             --HHHHHHHHHCCCEEEecCC
Confidence              2678899999999877753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.43  E-value=0.00034  Score=58.37  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG  172 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~  172 (300)
                      .++..++.....++..|||..||+|..+.+..+ .+.+++|+|+++.+++.++++++..+
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            344555555556889999999999999888765 57799999999999999999987543

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.40  E-value=0.037  Score=47.69  Aligned_cols=165  Identities=10%  Similarity=0.112  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcC-----------------
Q 022248          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAG-----------------  172 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~-----------------  172 (300)
                      ...+.+++... .+...|+-+|||-=.....+...  .+..++=||. +++++.=++.+...+                 
T Consensus        78 D~~v~~fl~~~-~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~  155 (334)
T 3iei_A           78 SQLIKAFLRKT-ECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQM  155 (334)
T ss_dssp             HHHHHHHHHHT-TTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBC
T ss_pred             HHHHHHHHHhC-CCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccc
Confidence            34444444443 14578999999998877777653  3678888887 444444333333210                 


Q ss_pred             ----CCCCCEEEEecccCcC----------CCCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          173 ----LPLTNFKFLQAVGEAI----------PVSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       173 ----~~~~~~~~~~~d~~~~----------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                          +..++..++.+|+.+.          .+..+..=++++-.++.+++.  ...+++.+.+.. |+|.+++.+.....
T Consensus       156 ~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~  234 (334)
T 3iei_A          156 DGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG  234 (334)
T ss_dssp             CTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT
T ss_pred             ccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC
Confidence                1135788999998653          134455567888888888853  356777777765 56677777766443


Q ss_pred             CchHHHHHHHhhhhhhhhhc--CCcccchHHHHHHHhcCCcEEEEe
Q 022248          237 DGTFLKFWQNVVDPLQQIVS--DGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      + .+...+.+.+...+....  ..+.+.++..+.|.++||+.++..
T Consensus       235 d-~fg~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~  279 (334)
T 3iei_A          235 D-RFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV  279 (334)
T ss_dssp             S-HHHHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred             C-HHHHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence            3 333333333222211111  124566888999999999987654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.28  E-value=0.00055  Score=58.58  Aligned_cols=84  Identities=12%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-  189 (300)
                      ++.+.++.+. .++..++|..||.|..+..+++.  +..+++|+|.++.+++.++ ++     ..++++++.+++..+. 
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~~l~~  118 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFSALGE  118 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGGGHHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHHHHHH
Confidence            4455555555 57889999999999999999874  4579999999999999884 33     1258999999987753 


Q ss_pred             ----CC-CCcccEEEEccc
Q 022248          190 ----VS-DASVDAVVGTLV  203 (300)
Q Consensus       190 ----~~-~~~~D~v~~~~~  203 (300)
                          .. .+++|.|+....
T Consensus       119 ~L~~~g~~~~vDgILfDLG  137 (347)
T 3tka_A          119 YVAERDLIGKIDGILLDLG  137 (347)
T ss_dssp             HHHHTTCTTCEEEEEEECS
T ss_pred             HHHhcCCCCcccEEEECCc
Confidence                11 136999997543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.18  E-value=0.0099  Score=52.22  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC--------CCCcccEE
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--------SDASVDAV  198 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~v  198 (300)
                      .+++|+-||.|.++..+.......+.++|+++.+++..+.+.       ++..++.+|+.++..        ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            589999999999998887654445779999999988887764       466788889877631        34679999


Q ss_pred             EEcccccCc--------ccHH-HHHHH---HHHcccCCcEEEEEecccC
Q 022248          199 VGTLVLCSV--------KDVD-MTLQE---VRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       199 ~~~~~l~~~--------~~~~-~~l~~---~~~~LkpgG~l~~~~~~~~  235 (300)
                      +...-...+        .|.. .++.+   +...++|.  +++.+++..
T Consensus        76 ~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~g  122 (376)
T 3g7u_A           76 IGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPG  122 (376)
T ss_dssp             EECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTT
T ss_pred             EecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchH
Confidence            975543333        2222 23333   44445774  566666554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.18  E-value=0.0018  Score=56.27  Aligned_cols=71  Identities=18%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             CCeEEEECCCCChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---CCCcccEEEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG  200 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~  200 (300)
                      ..+|+|+.||.|.+...+....  ...+.++|+++.+++..+.+.       +...++.+|+.++..   +...+|+|+.
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            3589999999999999887643  236899999999999988875       244567888877641   1125899997


Q ss_pred             ccc
Q 022248          201 TLV  203 (300)
Q Consensus       201 ~~~  203 (300)
                      ..-
T Consensus        75 gpP   77 (343)
T 1g55_A           75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            644

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.11  E-value=0.013  Score=50.48  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC--CceE-EEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQV-LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~-~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~  197 (300)
                      ....+++|+.||.|.+...+....  ...+ .++|+++.+.+..+.+..       .. ++.+|+.++.   ++...+|+
T Consensus         8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-------~~-~~~~DI~~~~~~~i~~~~~Di   79 (327)
T 3qv2_A            8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-------EE-VQVKNLDSISIKQIESLNCNT   79 (327)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-------CC-CBCCCTTTCCHHHHHHTCCCE
T ss_pred             CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-------CC-cccCChhhcCHHHhccCCCCE
Confidence            345689999999999998887643  1345 699999999988888762       22 5677777663   22236899


Q ss_pred             EEEcccccCc-----------ccHH-HHHHHHHH-cccC---CcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCccc
Q 022248          198 VVGTLVLCSV-----------KDVD-MTLQEVRR-VLKP---GGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHL  261 (300)
Q Consensus       198 v~~~~~l~~~-----------~~~~-~~l~~~~~-~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (300)
                      ++...-...+           .|.. .++.++.+ +++.   .-.+++.+++..-...                    ..
T Consensus        80 l~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~--------------------~~  139 (327)
T 3qv2_A           80 WFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKES--------------------LV  139 (327)
T ss_dssp             EEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGS--------------------HH
T ss_pred             EEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcCh--------------------HH
Confidence            9976544433           2332 45666666 5532   2456777766532110                    01


Q ss_pred             chHHHHHHHhcCCcEEE
Q 022248          262 TRQTGNNISEAGFSSVE  278 (300)
Q Consensus       262 ~~~~~~~l~~aGf~~v~  278 (300)
                      .+.+.+.|++.||.+..
T Consensus       140 ~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A          140 FKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             HHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhCCCEEEE
Confidence            24777888999998543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.96  E-value=0.002  Score=55.95  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=49.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~  188 (300)
                      ++..|||||.|.|.++..|++. ...+++++|+++..+...++.. .    .++++++.+|+.++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCccch
Confidence            3588999999999999999974 3458999999999999988775 2    25899999999654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.95  E-value=0.012  Score=48.69  Aligned_cols=113  Identities=19%  Similarity=0.288  Sum_probs=74.0

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHh--------CCCceEEEEc-----CCHH-------------------HHHHHH
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVD-----PNRK-------------------MEKYAQ  165 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~--------~~~~~~~giD-----~s~~-------------------~~~~a~  165 (300)
                      +.+.+..-++.|+|+|+-.|..+..++.        ....+++++|     +...                   ..+..+
T Consensus        62 l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~  141 (257)
T 3tos_A           62 LYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLK  141 (257)
T ss_dssp             HHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHH
T ss_pred             HHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHH
Confidence            3444444567999999999987777653        1357899998     3210                   111122


Q ss_pred             HHHH------HcCCCCCCEEEEecccCc-CC-----CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          166 TAAV------AAGLPLTNFKFLQAVGEA-IP-----VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       166 ~~~~------~~~~~~~~~~~~~~d~~~-~~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +.+.      ..+...++++++.+++.+ +|     .+.++||+|..-.-.  .......++.+...|+|||++++-+.
T Consensus       142 ~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          142 EVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             HHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             HHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence            2111      223323689999999865 33     345679999987632  23456678999999999999999664

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.75  E-value=0.071  Score=45.79  Aligned_cols=125  Identities=11%  Similarity=0.056  Sum_probs=76.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~  203 (300)
                      ...+++|+.||.|.+...+.......+.++|+++.+++..+.+...       ..  .+|+.++.. .-..+|+|+...-
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~-------~~--~~Di~~~~~~~~~~~D~l~~gpP   80 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-------KP--EGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-------CC--BSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC-------CC--cCCHHHcCHhhCCCCCEEEECCC
Confidence            3578999999999999988765444588999999999988887631       11  567766531 1135899997533


Q ss_pred             ccCc---------ccHH-HH---HHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          204 LCSV---------KDVD-MT---LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       204 l~~~---------~~~~-~~---l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ...+         .|.. .+   +-++.+.++|.  +++.+.+..-...          .       .....+.+.+.|+
T Consensus        81 CQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~----------~-------~~~~~~~i~~~l~  141 (327)
T 2c7p_A           81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASH----------D-------NGNTLEVVKNTMN  141 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTG----------G-------GGHHHHHHHHHHH
T ss_pred             CCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhc----------c-------ccHHHHHHHHHHH
Confidence            2222         2222 12   33344445785  5666655432110          0       0011236778888


Q ss_pred             hcCCcEE
Q 022248          271 EAGFSSV  277 (300)
Q Consensus       271 ~aGf~~v  277 (300)
                      +.||.+.
T Consensus       142 ~~GY~v~  148 (327)
T 2c7p_A          142 ELDYSFH  148 (327)
T ss_dssp             HTTBCCE
T ss_pred             hCCCEEE
Confidence            8998743

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.52  E-value=0.024  Score=48.94  Aligned_cols=124  Identities=16%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEEc
Q 022248          127 KKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGT  201 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~  201 (300)
                      .+++|+-||.|.+...+.....  ..+.++|+++.+.+..+.+.       +...++.+|+.++.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF-------PETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC-------CCCceeccccccCCHHHhccCCCCEEEec
Confidence            4799999999999988865322  35789999999988877764       24456778887663   222368999965


Q ss_pred             ccccCc---------ccHH-HHHHHHHHcc---c-CCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHH
Q 022248          202 LVLCSV---------KDVD-MTLQEVRRVL---K-PGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGN  267 (300)
Q Consensus       202 ~~l~~~---------~~~~-~~l~~~~~~L---k-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (300)
                      .-...+         .|.. .++.++.+++   + |  .+++.+++..-...                    ...+.+.+
T Consensus        77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~--------------------~~~~~i~~  134 (333)
T 4h0n_A           77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENS--------------------TVRNLFID  134 (333)
T ss_dssp             CCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGS--------------------HHHHHHHH
T ss_pred             CCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhh--------------------hHHHHHHH
Confidence            443332         2222 2344444444   4 5  56777766542110                    01236778


Q ss_pred             HHHhcCCcEEEE
Q 022248          268 NISEAGFSSVEL  279 (300)
Q Consensus       268 ~l~~aGf~~v~~  279 (300)
                      .|++.||.+...
T Consensus       135 ~l~~~GY~v~~~  146 (333)
T 4h0n_A          135 KLKECNFIYQEF  146 (333)
T ss_dssp             HHHHTTEEEEEE
T ss_pred             HHHhCCCeEEEE
Confidence            888999985433

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.36  E-value=0.0026  Score=53.12  Aligned_cols=102  Identities=5%  Similarity=-0.085  Sum_probs=74.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CC---CCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP---VSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~v~~  200 (300)
                      .+..+||+=+|+|.++..+++ .+.+++.+|.++..++..+++++.    .+++.++..|... +.   -+...||+|++
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence            456799999999999999887 457999999999999998888754    2579999999644 21   23457999998


Q ss_pred             cccccCcccHHHHHHHHHH--cccCCcEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRR--VLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~  231 (300)
                      .=-...-.+...+++.+.+  .+.|+|++++=-
T Consensus       166 DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WY  198 (283)
T 2oo3_A          166 DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWY  198 (283)
T ss_dssp             CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence            5322222345555655555  356899888843

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.18  E-value=0.011  Score=51.71  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----C-CCCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I-PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~-~~~~~~~D  196 (300)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.++..++.+++.    |..    .++...-.+    + ....+.+|
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----HVINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC----EEecCCccCHHHHHHHhcCCCCc
Confidence            5678999999875 7788888876666 699999999988887653    321    122211111    1 11123799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+.....      ...++...+.|+++|+++++...
T Consensus       261 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          261 FALESTGS------PEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             EEEECSCC------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEEECCCC------HHHHHHHHHHHhcCCEEEEeCCC
Confidence            99864321      24578899999999999987643

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.08  E-value=0.011  Score=51.36  Aligned_cols=93  Identities=20%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+||-+|+|. |.++..+++..+.+++++|.++..++.+++    .|..  .+  + .+.+.+  . +.+|+|+-..
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~v--~-~~~~~~--~-~~~D~vid~~  242 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK--HF--Y-TDPKQC--K-EELDFIISTI  242 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS--EE--E-SSGGGC--C-SCEEEEEECC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC--ee--c-CCHHHH--h-cCCCEEEECC
Confidence            5788999999864 777788887778899999999988877754    3431  22  2 333322  2 2799999644


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .-..      .+....+.|+|+|+++++....
T Consensus       243 g~~~------~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          243 PTHY------DLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             CSCC------CHHHHHTTEEEEEEEEECCCCC
T ss_pred             CcHH------HHHHHHHHHhcCCEEEEECCCC
Confidence            3321      2578889999999999986543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.00  E-value=0.0063  Score=53.94  Aligned_cols=101  Identities=19%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------C-CCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------P-VSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~  194 (300)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.++..++.+++.    |.     ..+...-.+.      . .....
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-----~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GF-----ETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TC-----EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC-----cEEcCCCcchHHHHHHHHhCCCC
Confidence            5788999999976 7888888876666 899999999888776542    32     2222111111      0 11236


Q ss_pred             ccEEEEcccccCc--------ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          195 VDAVVGTLVLCSV--------KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+|+-.-.-...        .+....+....+.|+++|+++++...
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            9999965432210        01223578899999999999887643

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.99  E-value=0.05  Score=47.74  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--------CCceEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 022248          106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLT  176 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------~~~~~~giD~s~~~~~~a~~~~~~~~~~~~  176 (300)
                      .|.+.+..++......+. +.+..|+|+|.|.|.+...+++.        ...+++.||+|+...+.-++.+...    +
T Consensus        60 ~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~----~  135 (387)
T 1zkd_A           60 MFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI----R  135 (387)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC----S
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC----C
Confidence            455556666666555544 33457999999999998887651        2358999999998877655554322    2


Q ss_pred             CEEEEecccCcCCCCCCcccEEEEcccccCcc
Q 022248          177 NFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK  208 (300)
Q Consensus       177 ~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~  208 (300)
                      ++.|.. +++++|.  + .=+|+++.++..+|
T Consensus       136 ~v~W~~-~l~~lp~--~-~~~viANE~fDAlP  163 (387)
T 1zkd_A          136 NIHWHD-SFEDVPE--G-PAVILANEYFDVLP  163 (387)
T ss_dssp             SEEEES-SGGGSCC--S-SEEEEEESSGGGSC
T ss_pred             CeEEeC-ChhhcCC--C-CeEEEeccccccCc
Confidence            566653 3444541  1 34666666665543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.96  E-value=0.12  Score=44.32  Aligned_cols=123  Identities=12%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEccccc
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLC  205 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~  205 (300)
                      .+|||+-||.|.+...+.+.....+.++|+++.+.+..+.+.        .-.++.+|+.++.. .-..+|+++...-..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC--------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence            379999999999988886543334679999999888877763        23567888877642 123689998643322


Q ss_pred             Cc---------ccHH-HHHH---HHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhc
Q 022248          206 SV---------KDVD-MTLQ---EVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       206 ~~---------~~~~-~~l~---~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      .+         .|.. .++.   ++.+.++|.  +++.+.+..-..                 .......+.+.+.|++.
T Consensus        73 ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~-----------------~~~~~~~~~i~~~l~~~  133 (331)
T 3ubt_Y           73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMA-----------------QRHNKAVQEFIQEFDNA  133 (331)
T ss_dssp             GTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGG-----------------CTTSHHHHHHHHHHHHH
T ss_pred             CcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeeccccc-----------------ccccchhhhhhhhhccC
Confidence            22         2332 3333   444455885  566666543210                 00011123677788888


Q ss_pred             CCcE
Q 022248          273 GFSS  276 (300)
Q Consensus       273 Gf~~  276 (300)
                      ||.+
T Consensus       134 GY~v  137 (331)
T 3ubt_Y          134 GYDV  137 (331)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            9874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.89  E-value=0.029  Score=48.70  Aligned_cols=96  Identities=21%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.++..++.+++.    |..    .++..+-.++     . .....+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT----DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC----EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc----eEEcCCCcCHHHHHHHHcCCCCC
Confidence            5788999999864 7778888887777 899999999888777654    321    2222111111     0 123469


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+-...-.      ..+....+.|+|+|+++++...
T Consensus       237 D~v~d~~g~~------~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          237 DKVVIAGGDV------HTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             EEEEECSSCT------THHHHHHHHEEEEEEEEECCCC
T ss_pred             CEEEECCCCh------HHHHHHHHHHhcCCEEEEeccc
Confidence            9999643221      2468889999999999987643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.79  E-value=0.017  Score=51.11  Aligned_cols=100  Identities=18%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-----CC--CCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-----IP--VSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-----~~--~~~~~  194 (300)
                      .++.+||-+|+|. |.++.++++..+. .++++|.++..++.+++.    |.     +.+...-.+     +.  .....
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-----~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF-----EIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC-----EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC-----cEEccCCcchHHHHHHHHhCCCC
Confidence            5778999999865 7788888876676 799999999888877642    32     222211111     10  11246


Q ss_pred             ccEEEEccccc---------CcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          195 VDAVVGTLVLC---------SVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+|+-.-.-.         +.++....++...+.|++||+++++..
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            99999654322         223344568899999999999988764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.77  E-value=0.84  Score=43.37  Aligned_cols=167  Identities=13%  Similarity=0.146  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhh-cCCCCeEEEECCCCChhHHHhHhC-C--------CceEEEEcCCHHHHHHHHHHHHHcC--------
Q 022248          111 VAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAAD-T--------DVQVLGVDPNRKMEKYAQTAAVAAG--------  172 (300)
Q Consensus       111 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~--------~~~~~giD~s~~~~~~a~~~~~~~~--------  172 (300)
                      +...+.++++.. ..+...|+-+|||-=.....|... .        +..++=||..+ +++.=++.++...        
T Consensus        92 ~d~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~-v~~~K~~~l~~~~~l~~~~~~  170 (695)
T 2zwa_A           92 IRSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSD-LLKIKIELIKTIPELSKIIGL  170 (695)
T ss_dssp             HHHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHH-HHHHHHHHHHHCHHHHHHTTC
T ss_pred             HHHHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHH-HHHHHHHHHHcChHHHHhhcc
Confidence            445555555554 234578999999998888777543 2        45667777643 3333333343211        


Q ss_pred             -----CC---------CCCEEEEecccCcCC----------C-CCCcccEEEEcccccCccc--HHHHHHHHHHcccCCc
Q 022248          173 -----LP---------LTNFKFLQAVGEAIP----------V-SDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGG  225 (300)
Q Consensus       173 -----~~---------~~~~~~~~~d~~~~~----------~-~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG  225 (300)
                           +.         .++..++..|+.+..          + ....--++++-.++.+++.  ..++|+.+.+ + |+|
T Consensus       171 ~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~  248 (695)
T 2zwa_A          171 SEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENS  248 (695)
T ss_dssp             CSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSE
T ss_pred             ccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCc
Confidence                 00         137788999987631          2 3344556777788888853  3567887775 4 688


Q ss_pred             EEEEEecccCC--CchHHHHHHHhhhhhhhhh--cCCcccchHHHHHHHhcCCcEEEEe
Q 022248          226 IYLFVEHVAAK--DGTFLKFWQNVVDPLQQIV--SDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       226 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      .+++.+.....  ...+...+.+.+.......  ...+.+.++..+.|.++||+.+...
T Consensus       249 ~~~~~e~~~~~~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~  307 (695)
T 2zwa_A          249 HFIILEQLIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVG  307 (695)
T ss_dssp             EEEEEEECCTTCTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEEeecCCCCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCccee
Confidence            88887754432  2223332222222111100  1134567899999999999976655

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.70  E-value=0.013  Score=46.31  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC---cC-C-CCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE---AI-P-VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~-~-~~~~~~D  196 (300)
                      .++.+||..|+  |.|.....++...+.+++++|.+++..+.+++    .+.   ...+-..+..   .+ . .....+|
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV---EYVGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC---SEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC---CEEeeCCcHHHHHHHHHHhCCCCCe
Confidence            46789999994  55666666666567799999999887766543    232   1111111110   00 0 1224699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+....       ...++.+.+.|+|+|+++++...
T Consensus       110 ~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          110 VVLNSLA-------GEAIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEECCC-------THHHHHHHHTEEEEEEEEECSCG
T ss_pred             EEEECCc-------hHHHHHHHHHhccCCEEEEEcCC
Confidence            9996543       13578899999999999987643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.64  E-value=0.016  Score=49.84  Aligned_cols=58  Identities=7%  Similarity=-0.034  Sum_probs=46.7

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG  172 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~  172 (300)
                      ++..++.....++..|||.-||+|..+.+... .+.+++|+|+++...+.++++++..+
T Consensus       241 l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          241 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            44555555557889999999999998877664 57899999999999999998876544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.63  E-value=0.03  Score=48.88  Aligned_cols=96  Identities=16%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D  196 (300)
                      .++.+||-+|+|. |.++..+++..+.+++++|.++..++.+++.    |..    .++..+..++.      .....+|
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~v~~~~~g~g~D  259 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD----HGINRLEEDWVERVYALTGDRGAD  259 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC----EEEcCCcccHHHHHHHHhCCCCce
Confidence            5788999999864 7777788877788999999999888877653    321    12222211110      1234799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|+....-.       .+....+.|+|+|+++++....
T Consensus       260 ~vid~~g~~-------~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          260 HILEIAGGA-------GLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             EEEEETTSS-------CHHHHHHHEEEEEEEEEECCCS
T ss_pred             EEEECCChH-------HHHHHHHHhhcCCEEEEEecCC
Confidence            999654421       3577889999999999986543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.63  E-value=0.016  Score=50.06  Aligned_cols=96  Identities=19%  Similarity=0.165  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v  198 (300)
                      .++.+||-+|+|. |.++..+++..+.+++++|.++..++.+++    .|..    .++...-.++.    -..+.+|+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE----VAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC----EEEeCCCcCHHHHHHHhCCCCCEE
Confidence            5778999999864 788888888778899999999988887755    3321    11211111110    011368888


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +....      ....++...+.|+|+|++++....
T Consensus       237 id~~g------~~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          237 LVTAV------SPKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             EESSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEeCC------CHHHHHHHHHHhccCCEEEEeCCC
Confidence            85432      134578889999999999987643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.43  E-value=0.12  Score=45.74  Aligned_cols=97  Identities=11%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||=+|+|. |.++..+++..+. +++++|.++.-++.+++.    |..    .++..+-.++     . .....+
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD----HVIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTTSCHHHHHHHHTTTCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEEcCCCCCHHHHHHHHhCCCCC
Confidence            5678999999853 6677777776677 899999999888887654    321    1222111111     0 123469


Q ss_pred             cEEEEcccccCcccHHHHHHHHH----HcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVR----RVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~----~~LkpgG~l~~~~~~  233 (300)
                      |+|+-.-     ......+..+.    +.++++|+++++...
T Consensus       284 D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          284 KLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             SEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            9999533     22222334444    444999999997643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.40  E-value=0.027  Score=49.25  Aligned_cols=94  Identities=21%  Similarity=0.264  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-CCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~  200 (300)
                      .++.+||-+|+|. |.++..+++..+.+++++|.++..++.+++.    |..  .  ++...-.+ . ... +.+|+|+.
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~--~--vi~~~~~~~~~~~~-~g~Dvvid  263 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD--E--VVNSRNADEMAAHL-KSFDFILN  263 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS--E--EEETTCHHHHHTTT-TCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc--E--EeccccHHHHHHhh-cCCCEEEE
Confidence            5788999999874 7777788876788999999999888877652    321  1  12111001 0 111 57999996


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ...-..      .++...+.|+++|+++.+..
T Consensus       264 ~~g~~~------~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          264 TVAAPH------NLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             CCSSCC------CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCCHH------HHHHHHHHhccCCEEEEecc
Confidence            543321      25778899999999998764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.38  E-value=0.023  Score=48.75  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCH---HHHHHHHHHHHHcC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR---KMEKYAQTAAVAAG  172 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~---~~~~~a~~~~~~~~  172 (300)
                      .++..++.....++..|||.-||+|..+.+... .+.+++|+|+++   ..++.++++++..+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~-~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHH-cCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            344455555556889999999999998877764 577999999999   99999999876543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.25  E-value=0.018  Score=49.16  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .++.+||=+|+| .|.++.++++..+.+++++| ++...+.+++.    |.    -.++ .|.+.+   .+.+|+|+-.-
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga----~~v~-~d~~~v---~~g~Dvv~d~~  207 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV----RHLY-REPSQV---TQKYFAIFDAV  207 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE----EEEE-SSGGGC---CSCEEEEECC-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC----CEEE-cCHHHh---CCCccEEEECC
Confidence            578899999985 47788888876777999999 88888777653    22    1222 233333   56799998533


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .-.       .+....+.|+++|+++.+.
T Consensus       208 g~~-------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          208 NSQ-------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------TTGGGEEEEEEEEEEC
T ss_pred             Cch-------hHHHHHHHhcCCCEEEEEe
Confidence            211       1356788999999999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.23  E-value=0.03  Score=48.71  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc------c-CcC-CCCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV------G-EAI-PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d------~-~~~-~~~~~  193 (300)
                      .++.+||-+|+|. |.++..+++..+. +++++|.++..++.+++    .|..    .++..+      . +.+ ....+
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD----LVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEcCcccccchHHHHHHHHhCC
Confidence            5778999999874 7778888876677 89999999988777654    3321    122211      0 011 00014


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .+|+|+-.-.-      ...+....+.|+|+|+++++..
T Consensus       242 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          242 KPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEec
Confidence            69999864321      2346888899999999998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.14  E-value=0.015  Score=50.92  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C---CCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P---VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~---~~~~  193 (300)
                      .++.+||-+|+|. |.++..+++..+. +++++|.++...+.+++.    |..    ..+...-.++     .   ...+
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT----ATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS----EEECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC----EEECCCCcCHHHHHHhhhhccCC
Confidence            5778999999864 6777778776776 899999999888777653    321    1121111110     1   2234


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+|+|+-...      ....+....+.|++||+++++....
T Consensus       253 g~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          253 GVDVVIECAG------VAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             CEEEEEECSC------CHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             CCCEEEECCC------CHHHHHHHHHHhccCCEEEEEeccC
Confidence            7999996432      1235788999999999999976543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=95.13  E-value=0.17  Score=44.96  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             HhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC------CCceEEEEcCCHHHHHHHHHHHHH
Q 022248          105 KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA  170 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~~giD~s~~~~~~a~~~~~~  170 (300)
                      ..|.+.+..++.++.+...  ...|+|+|.|+|.+...+++.      ...+++.||+|+...+.-++++..
T Consensus       119 ~~FGe~la~~~~~~~~~~g--~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          119 PLFAQTLARPVAQALDASG--TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC--CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3455556666666665543  579999999999988888651      134899999999988888877764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.10  E-value=0.13  Score=44.61  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=65.7

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-----ccC-cC--CCCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-----VGE-AI--PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~-~~--~~~~~  193 (300)
                      .++.+||=+|+|. |.++.++++..+.+ ++++|.++..++.+++. . .    ..+.+...     ++. .+  -....
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~----~~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-P----EVVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-T----TCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-h----hcccccccccchHHHHHHHHHHhCCC
Confidence            5778899999864 77778888767776 99999999998888765 1 1    12222211     110 01  01235


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .+|+|+-...-      ...+....+.|++||+++++...
T Consensus       252 g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          252 EPAVALECTGV------ESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             CCSEEEECSCC------HHHHHHHHHHSCTTCEEEECCCC
T ss_pred             CCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEccC
Confidence            79999964321      23568889999999999997643

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.05  E-value=0.24  Score=44.86  Aligned_cols=74  Identities=9%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---------------
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---------------  190 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------------  190 (300)
                      ..+++|+-||.|.+...+.......+.++|+++.+.+..+.+....    +...++.+|+.++..               
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~----p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD----PATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC----TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC----CCcceeccchhhhhhccccccchhhHHhhh
Confidence            4689999999999998886543334889999998887776654110    234456677755421               


Q ss_pred             --CCCcccEEEEccc
Q 022248          191 --SDASVDAVVGTLV  203 (300)
Q Consensus       191 --~~~~~D~v~~~~~  203 (300)
                        .-..+|+|+...-
T Consensus       164 ~~~~~~~Dvl~gGpP  178 (482)
T 3me5_A          164 RQHIPEHDVLLAGFP  178 (482)
T ss_dssp             HHHSCCCSEEEEECC
T ss_pred             hhcCCCCCEEEecCC
Confidence              1136899986543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.91  E-value=0.097  Score=45.31  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcC----C--CC---C
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI----P--VS---D  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~----~--~~---~  192 (300)
                      .++.+||-+|+|. |.++..+++..+.+|+++|.++..++.+++    .+..    .++..+- .+.    .  ..   .
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD----VTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS----EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCcccccHHHHHHHHhccccC
Confidence            4778999999864 677777777677789999999988877754    3331    1121110 111    0  11   2


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..+|+|+....-      ...++...+.|+++|+++++..
T Consensus       239 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          239 DLPNVTIDCSGN------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence            469999864321      2346888899999999998764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.89  E-value=0.048  Score=47.09  Aligned_cols=94  Identities=13%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCC--CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec----cc-CcCCCCCCccc
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA----VG-EAIPVSDASVD  196 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----d~-~~~~~~~~~~D  196 (300)
                      ++.+||-+|+|. |.++.++++..  +.+++++|.++..++.+++.    |..    .++..    +. ..+. ....+|
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~~~~-~g~g~D  240 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD----YVSEMKDAESLINKLT-DGLGAS  240 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS----EEECHHHHHHHHHHHH-TTCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC----EEeccccchHHHHHhh-cCCCcc
Confidence            678999999863 66777777755  78999999999888877653    321    11211    11 1111 123799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+..-.-      ...++...+.|+|+|+++.+...
T Consensus       241 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          241 IAIDLVGT------EETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             EEEESSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCC------hHHHHHHHHHhhcCCEEEEeCCC
Confidence            99965332      23578889999999999987643

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.79  E-value=0.079  Score=47.03  Aligned_cols=61  Identities=13%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCCCeEEEECCCCChhHHHhH-h-CC-CceEEEEcCCHHHHHHHHHHHHH--c-CCCCCCEEEEeccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYA-A-DT-DVQVLGVDPNRKMEKYAQTAAVA--A-GLPLTNFKFLQAVG  185 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~-~-~~-~~~~~giD~s~~~~~~a~~~~~~--~-~~~~~~~~~~~~d~  185 (300)
                      .++..++|||++.|.++..++ + .+ ..+|+++|+++...+..+++++.  + +.. +++.++...+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~-~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFA-SRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTG-GGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCC-CCEEEEEeEE
Confidence            467899999999999998877 3 23 36999999999999999999887  2 221 3677765544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.78  E-value=0.071  Score=50.73  Aligned_cols=127  Identities=17%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             CCCeEEEECCCCChhHHHhHhC--------C-----CceEEEEcC---CHHHHHHHH-----------HHHHHcCC----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD--------T-----DVQVLGVDP---NRKMEKYAQ-----------TAAVAAGL----  173 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--------~-----~~~~~giD~---s~~~~~~a~-----------~~~~~~~~----  173 (300)
                      +..+|+|+|.|+|.....+.+.        +     ..+++.+|.   +...+..+-           +.+.....    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4579999999999876665431        1     157899998   555544322           11221110    


Q ss_pred             ------CC--CCEEEEecccCc-CC-CC---CCcccEEEEcc-cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCC
Q 022248          174 ------PL--TNFKFLQAVGEA-IP-VS---DASVDAVVGTL-VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKD  237 (300)
Q Consensus       174 ------~~--~~~~~~~~d~~~-~~-~~---~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~  237 (300)
                            ..  -.++++.+|+.+ ++ +.   ++.+|+++... ....-+++  ..++..+.++++|||.+....  .   
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~--~---  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT--A---  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC--C---
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc--C---
Confidence                  00  145667777744 22 21   46899998743 11211222  578899999999999876532  1   


Q ss_pred             chHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          238 GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                                              ...+++.|.++||.+....
T Consensus       213 ------------------------~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          213 ------------------------AGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             ------------------------CHHHHHHHHHTTCEEEEEE
T ss_pred             ------------------------cHHHHHHHHhCCeEEEecc
Confidence                                    1267788999999977655

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.77  E-value=0.058  Score=46.29  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||-.|+  |.|..+..++...+.+++++|.++..++.+++    .+.   ...+-..+.+++     ....+.+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF---DAAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC---cEEEecCCHHHHHHHHHHHhCCCCe
Confidence            46789999997  56777777776677899999999887777633    232   111111110111     01125799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+.....       ..+....+.|++||+++++..
T Consensus       217 ~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          217 CYFDNVGG-------EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence            99875432       246888899999999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.76  E-value=0.04  Score=47.54  Aligned_cols=95  Identities=15%  Similarity=0.208  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCC--CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||-+|+|  .|.++..+++..+++++++|.++..++.+++.    +.   .. .+...-.++.      .....+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga---~~-~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GA---AY-VIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC---SE-EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CC---cE-EEeCCcccHHHHHHHHhCCCCC
Confidence            578899999986  67777777776678999999999888877653    32   11 1211111110      123479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+....-.       .+.+..+.|+++|+++++...
T Consensus       215 Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          215 DAAIDSIGGP-------DGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             EEEEESSCHH-------HHHHHHHTEEEEEEEEECCCT
T ss_pred             cEEEECCCCh-------hHHHHHHHhcCCCEEEEEeec
Confidence            9998643221       124455899999999998653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.75  E-value=0.56  Score=40.96  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=76.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      .+.+||.++.+.|.++..++..   .++.+.-|-...+..+.++..+++....+++.... +.+   .+.||+|+... .
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~---~~~~~~v~~~l-p  109 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDST-ADY---PQQPGVVLIKV-P  109 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT-SCC---CSSCSEEEEEC-C
T ss_pred             CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEecccc-ccc---ccCCCEEEEEc-C
Confidence            4568999999999999988743   33444335555566677888888864456665332 222   36799998743 2


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      .........|..+...|+||+.+++..............+...
T Consensus       110 k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~  152 (375)
T 4dcm_A          110 KTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV  152 (375)
T ss_dssp             SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence            3334556678999999999999998876554433344444433

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.71  E-value=0.052  Score=46.45  Aligned_cols=96  Identities=13%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~  195 (300)
                      .++.+||-.|  .|.|..+..+++..+.+++++|.++..++.+++.    +.   . ..+...-.++      ......+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~-~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GA---W-ETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---S-EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---C-EEEeCCCccHHHHHHHHhCCCCc
Confidence            5678999988  3567777787776778999999999888877653    32   1 1121111111      0123479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |+|+....-       ..+....+.|+++|+++++....
T Consensus       211 Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          211 PVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             EEEEESSCG-------GGHHHHHTTEEEEEEEEECCCTT
T ss_pred             eEEEECCCh-------HHHHHHHHHhcCCCEEEEEecCC
Confidence            999965432       24678889999999999986543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.68  E-value=0.092  Score=45.37  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASVD  196 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~D  196 (300)
                      ++.+||-+|+| .|.++..+++..+. +++++|.++..++.+++.    +..    .++..+-.++     . .....+|
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~----~~~~~~~~~~~~~v~~~~~g~g~D  238 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD----YVINPFEEDVVKEVMDITDGNGVD  238 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS----EEECTTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EEECCCCcCHHHHHHHHcCCCCCC
Confidence            67899999985 36677777776677 899999999887777643    321    1121111111     0 1123699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+.....      ...++...+.|+++|+++.+...
T Consensus       239 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          239 VFLEFSGA------PKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             EEEECSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCC------HHHHHHHHHHHhcCCEEEEEccC
Confidence            99865431      23568889999999999987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.62  E-value=0.46  Score=34.95  Aligned_cols=92  Identities=9%  Similarity=0.030  Sum_probs=57.4

Q ss_pred             CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v  198 (300)
                      ..+|+=+|+|  .++..+++   ..+..++++|.+++.++.+++.         .+.++.+|..+..    ..-..+|+|
T Consensus         7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~---------g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRER---------GVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc---------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence            3578888885  45555443   4677999999999988776642         4567778875431    122478888


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++...-.   .....+-...+.+.|+..++...
T Consensus        76 i~~~~~~---~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           76 ILTIPNG---YEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EECCSCH---HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEECCCh---HHHHHHHHHHHHHCCCCeEEEEE
Confidence            8643111   11122344566678888777644

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.57  E-value=0.052  Score=46.88  Aligned_cols=93  Identities=23%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||-.|+  |.|.++..+++..+.++++++.++..++.+++.    +.  +.  ++..+ .++.      .....+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga--~~--v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA--DI--VLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC--SE--EEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC--cE--EecCc-hhHHHHHHHHhCCCCc
Confidence            56889999996  567788888877788999999999888777653    32  11  22222 1110      123479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+....-.       .+....+.|+++|+++++..
T Consensus       229 Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          229 DMVVDPIGGP-------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEEEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred             eEEEECCchh-------HHHHHHHhhcCCCEEEEEEc
Confidence            9999654332       36788899999999998763

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.57  E-value=0.13  Score=44.35  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||-+|+  |.|..+..+++..+.+++++|.++..++.+++.    +..  .  ++...-.++     . .....+
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~--~--~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD--E--TVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS--E--EEETTSTTHHHHHHHHTTTTCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC--E--EEcCCcccHHHHHHHHhCCCCc
Confidence            46789999998  567777777776778999999999888877542    321  1  121111111     0 122479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+.... ..      .++.+.+.|+++|+++++...
T Consensus       237 d~vi~~~g-~~------~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          237 DKVVDHTG-AL------YFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             EEEEESSC-SS------SHHHHHHHEEEEEEEEESSCC
T ss_pred             eEEEECCC-HH------HHHHHHHhhccCCEEEEEecC
Confidence            99997654 21      367888999999999987643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.57  E-value=0.088  Score=49.94  Aligned_cols=127  Identities=17%  Similarity=0.200  Sum_probs=77.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-------------CCceEEEEcC---CHHHHHHHHH-----------HHHHcCCCC--
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-------------TDVQVLGVDP---NRKMEKYAQT-----------AAVAAGLPL--  175 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-------------~~~~~~giD~---s~~~~~~a~~-----------~~~~~~~~~--  175 (300)
                      +.-+|||+|-|+|.......+.             ...+++++|.   +.+.+..+-.           .........  
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            4569999999999766555331             1246899998   7777764322           222111100  


Q ss_pred             ----------CCEEEEecccCc-CC-CC---CCcccEEEEcc-cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCC
Q 022248          176 ----------TNFKFLQAVGEA-IP-VS---DASVDAVVGTL-VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKD  237 (300)
Q Consensus       176 ----------~~~~~~~~d~~~-~~-~~---~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~  237 (300)
                                ..+++..+|+.+ ++ +.   ...||+++... ....-+++  ..+++.+.++++|||.+.....     
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~-----  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS-----  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC-----
Confidence                      123455566643 22 11   46799998743 11111232  5789999999999998775331     


Q ss_pred             chHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          238 GTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                                              ...+++.|.++||.+....
T Consensus       221 ------------------------~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          221 ------------------------AGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             ------------------------CHHHHHHHHHHTCEEEEEE
T ss_pred             ------------------------cHHHHHHHHhCCeEEEecc
Confidence                                    1267788889999876644

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.49  E-value=0.056  Score=46.43  Aligned_cols=94  Identities=21%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||-+|+  |.|..+..+++..+.+++++|.++..++.+++    .+.   . ..+..+-.++.      .....+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga---~-~~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA---E-YLINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---S-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---c-EEEeCCCchHHHHHHHHhCCCCc
Confidence            57789999984  56777778877778899999999988776654    232   1 12221111110      123469


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+....-       ..+....+.|+++|+++++..
T Consensus       219 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          219 DASFDSVGK-------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             eEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence            999965432       246788899999999999764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.43  E-value=0.11  Score=45.30  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  194 (300)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.++..++.+++    .|..    .++...-  +++     ....+.
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT----DFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC----EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----eEEeccccchhHHHHHHHHhCCC
Confidence            4678999999863 6777777776677 89999999988887764    2321    1221110  111     011247


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      +|+|+..-..      ...+....+.|+++ |+++++...
T Consensus       263 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          263 VDFSLECVGN------VGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEcCC
Confidence            9999864321      23578899999999 999987643

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.39  E-value=0.12  Score=45.14  Aligned_cols=95  Identities=17%  Similarity=0.227  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  194 (300)
                      .++.+||-+|+|. |.++.++++..+. +++++|.++..++.+++.    |..    .++...-  +++     ....+.
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT----ECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS----EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc----eEeccccccccHHHHHHHHhCCC
Confidence            4678999999864 6777777776666 899999999888877643    321    1221110  111     111247


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEec
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  232 (300)
                      +|+|+....-      ...++...+.|+++ |+++++..
T Consensus       261 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          261 VDYSFECIGN------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence            9999864321      23578889999999 99998764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.34  E-value=0.12  Score=45.07  Aligned_cols=95  Identities=17%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  194 (300)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.++..++.+++    .|..    .++...-  +++     ....+.
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT----ECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----eEecccccchhHHHHHHHHhCCC
Confidence            4678999999864 6777777776677 89999999988877754    2321    1221110  111     111247


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEec
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  232 (300)
                      +|+|+..-.-      ...+....+.|+++ |+++++..
T Consensus       262 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          262 VDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             BSEEEECSCC------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             CcEEEECCCC------HHHHHHHHHHhhcCCcEEEEecc
Confidence            9999864321      23568889999999 99998764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.33  E-value=0.11  Score=45.28  Aligned_cols=89  Identities=12%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             CCeEEEECCC-CChhHHHhHhCCCceEEEEcCCH---HHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC------CCcc
Q 022248          126 AKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNR---KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS------DASV  195 (300)
Q Consensus       126 ~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~  195 (300)
                      +.+||-+|+| .|.++..+++..+.+++++|.++   +.++.+++.    +.     ..+  | .+ .+.      .+.+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga-----~~v--~-~~-~~~~~~~~~~~~~  247 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KT-----NYY--N-SS-NGYDKLKDSVGKF  247 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TC-----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CC-----cee--c-hH-HHHHHHHHhCCCC
Confidence            7899999984 35566666665677999999987   666666542    32     222  2 11 111      1469


Q ss_pred             cEEEEcccccCcccHHHHH-HHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTL-QEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+.......      .+ +...+.|+++|.++++...
T Consensus       248 d~vid~~g~~~------~~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          248 DVIIDATGADV------NILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             EEEEECCCCCT------HHHHHHGGGEEEEEEEEECSCC
T ss_pred             CEEEECCCChH------HHHHHHHHHHhcCCEEEEEecC
Confidence            99997543321      35 7889999999999987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.25  E-value=0.11  Score=45.36  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  194 (300)
                      .++.+||-+|+|. |.++.++++..+. +|+++|.++..++.+++    .|..    .++...-  +++     ....+.
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT----ECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEecccccchHHHHHHHHhCCC
Confidence            4678999999863 6777777776666 89999999988877754    3321    1221110  111     111247


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      +|+|+-.-.-      ...+....+.|+++ |+++++...
T Consensus       262 ~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          262 VDYAVECAGR------IETMMNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             CCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEccC
Confidence            9999964321      23578889999999 999987643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.08  E-value=0.051  Score=46.70  Aligned_cols=96  Identities=11%  Similarity=0.117  Sum_probs=63.9

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||-.|+  |.|..+..+++..+.+++++|.++..++.+.+.   .+..    ..+...-.++     ....+.+|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD----GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS----EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC----EEEECCCHHHHHHHHHhcCCCce
Confidence            57889999998  567777777776788999999999877766322   2321    1121111111     01135799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+....-       ..+....+.|+++|+++++...
T Consensus       221 ~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          221 VFFDNVGG-------EILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             EEEESSCH-------HHHHHHHTTEEEEEEEEECCCG
T ss_pred             EEEECCCc-------chHHHHHHHHhhCCEEEEEeec
Confidence            99864431       3578899999999999987643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.04  E-value=0.072  Score=46.06  Aligned_cols=97  Identities=24%  Similarity=0.357  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCC--CChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---C-CCCC-Ccc
Q 022248          124 GKAKKVLEIGIG--TGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---I-PVSD-ASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~-~~~~-~~~  195 (300)
                      .++.+||-.|+|  .|..+..+++.. +.+++++|.++..++.+++.    +.   ...+-..+...   + .... +.+
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---DYVINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC---CEEecCCCccHHHHHHHHhcCCCc
Confidence            577899999987  556666666655 78999999999888777542    32   11121111110   0 1112 479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+....-      ...++...+.|+++|+++++...
T Consensus       242 d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          242 DAVIDLNNS------EKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             EEEEESCCC------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             eEEEECCCC------HHHHHHHHHHHhcCCEEEEECCC
Confidence            999865432      23568888999999999987643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.96  E-value=0.11  Score=45.14  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||-+|  .|.|..+..+++..+.+++++|.+++.++.+++    .+..    .++..+-.++     ....+.+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD----RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc----EEEecCChhHHHHHHHhcCCCCC
Confidence            4678999999  467888888887678899999999887777654    2321    1121111111     01124699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+....-       ..++.+.+.|+++|+++++...
T Consensus       234 ~vid~~g~-------~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          234 VVYESVGG-------AMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             EEEECSCT-------HHHHHHHHHEEEEEEEEECCCG
T ss_pred             EEEECCCH-------HHHHHHHHHHhcCCEEEEEeCC
Confidence            99965431       3578889999999999987643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.91  E-value=0.074  Score=46.18  Aligned_cols=94  Identities=12%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             CeEEEECCC-CChhH-HHhH-hCCCce-EEEEcCCHH---HHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEE
Q 022248          127 KKVLEIGIG-TGPNL-KYYA-ADTDVQ-VLGVDPNRK---MEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAV  198 (300)
Q Consensus       127 ~~vLDiGcG-~G~~~-~~l~-~~~~~~-~~giD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  198 (300)
                      .+||-+|+| .|.++ .+++ +..+.+ |+++|.+++   .++.+++    .|..  .+.....++.++ .. .+.+|+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~--~v~~~~~~~~~i~~~-~gg~Dvv  246 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT--YVDSRQTPVEDVPDV-YEQMDFI  246 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE--EEETTTSCGGGHHHH-SCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc--ccCCCccCHHHHHHh-CCCCCEE
Confidence            899999974 46777 8888 767776 999999887   7777654    2321  110000111111 01 2379999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +-...-      ...++...+.|+++|+++.+...
T Consensus       247 id~~g~------~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          247 YEATGF------PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             EECSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EECCCC------hHHHHHHHHHHhcCCEEEEEeCC
Confidence            854321      23568889999999999987654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.88  E-value=0.16  Score=44.31  Aligned_cols=95  Identities=16%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~  194 (300)
                      .++.+||-+|+| .|.++..+++..+. +|+++|.++..++.+++    .|..    .++...-  +++     ....+.
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT----DCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc----EEEccccccchHHHHHHHHhCCC
Confidence            467899999986 36777777776677 89999999988777754    2321    1121110  111     011237


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEec
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  232 (300)
                      +|+|+-.-.-      ...++...+.|+++ |+++++..
T Consensus       266 ~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          266 VDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             BSEEEESSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ccEEEECCCC------HHHHHHHHHHhhcCCCEEEEECC
Confidence            9999854321      23578899999999 99998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.84  E-value=0.12  Score=45.24  Aligned_cols=96  Identities=19%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--cCcC-----CCCCCc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--GEAI-----PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~~~~-----~~~~~~  194 (300)
                      .++.+||=+|+| .|.++..+++..+. +|+++|.++..++.+++    .|..    .++...  -.++     ....+.
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN----EFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC----EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----EEEccccCchhHHHHHHHhcCCC
Confidence            567899999986 47777777776666 89999999988877654    3321    122111  1111     112347


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      +|+|+-...-      ...+....+.|++| |+++++...
T Consensus       264 ~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          264 VDYSFECIGN------VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCEEEECCCC------HHHHHHHHHHhhccCCEEEEEccc
Confidence            9999964321      23578899999997 999997643

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.63  E-value=0.13  Score=44.55  Aligned_cols=95  Identities=14%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||-.|+  |.|..+..++...+.+++++|.++..++.+++.    +.   ... +..+-.+.     . .....+
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~---~~~-~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GA---AAG-FNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC---SEE-EETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC---cEE-EecCChHHHHHHHHHhcCCCc
Confidence            46789999984  567777777766778999999999888777432    32   111 11111110     0 122469


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+....-.       .+....+.|+++|+++++...
T Consensus       233 d~vi~~~G~~-------~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          233 NLILDCIGGS-------YWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             EEEEESSCGG-------GHHHHHHHEEEEEEEEECCCT
T ss_pred             eEEEECCCch-------HHHHHHHhccCCCEEEEEecc
Confidence            9998655432       357788999999999987643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.62  E-value=0.13  Score=44.63  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~  195 (300)
                      .++.+||-.|+  |.|..+..+++..+.+++++|.++..++.+++    .+.   .. .+..+-.+.      -.....+
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~-~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA---HE-VFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SE-EEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCC---CE-EEeCCCchHHHHHHHHcCCCCc
Confidence            46789999996  56677777777677899999999887776543    232   11 121111111      0122469


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+....-       ..+....+.|+++|+++++..
T Consensus       241 D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          241 DIIIEMLAN-------VNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEEESCHH-------HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEEECCCh-------HHHHHHHHhccCCCEEEEEec
Confidence            999865431       246788899999999998764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.61  E-value=0.11  Score=45.66  Aligned_cols=96  Identities=21%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc---cCc----C-C-CCC
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV---GEA----I-P-VSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~----~-~-~~~  192 (300)
                      .++.+||-+|+| .|.++..+++..+ .+++++|.+++.++.+++    .|..    .++..+   -.+    + . ...
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD----LTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc----EEEeccccCcchHHHHHHHHhCC
Confidence            467899999965 4677777777677 599999999988877764    3321    122211   001    1 0 122


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..+|+|+-...-.      ..+....+.|+++|+++.+...
T Consensus       266 ~g~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~~  300 (380)
T 1vj0_A          266 RGADFILEATGDS------RALLEGSELLRRGGFYSVAGVA  300 (380)
T ss_dssp             SCEEEEEECSSCT------THHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCcEEEECCCCH------HHHHHHHHHHhcCCEEEEEecC
Confidence            3699999654321      2467888999999999987643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.57  E-value=0.13  Score=44.20  Aligned_cols=96  Identities=13%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||-.|+  |.|..+..+++..+.+++++|.++..++.+++.   .+.   ...+-..+..++     ....+.+|
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~---~~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGF---DDAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCC---SEEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC---ceEEecCCHHHHHHHHHHHhCCCCc
Confidence            46789999997  567777777776778999999998877766532   232   111111111111     01125699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+.....       ..+....+.|+++|+++++..
T Consensus       228 ~vi~~~g~-------~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          228 IYFENVGG-------KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCCH-------HHHHHHHHHHhcCCEEEEEcc
Confidence            99865431       257889999999999998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.57  E-value=0.06  Score=46.85  Aligned_cols=96  Identities=17%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC-cC--CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AI--PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~~D~v~  199 (300)
                      .++.+||-+|+| .|.++..+++..+.+++++|.++..++.+++.    |..  .  ++...-. +.  ... +.+|+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~--v~~~~~~~~~~~~~~-~~~D~vi  248 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD--H--YIATLEEGDWGEKYF-DTFDLIV  248 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS--E--EEEGGGTSCHHHHSC-SCEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC--E--EEcCcCchHHHHHhh-cCCCEEE
Confidence            578899999985 36777777776677899999998888777652    321  1  1211111 11  111 4799999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ....-..    ...++...+.|+++|+++.+..
T Consensus       249 d~~g~~~----~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSLT----DIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred             ECCCCCc----HHHHHHHHHHhcCCCEEEEecC
Confidence            6543300    0124667889999999988653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.56  E-value=0.11  Score=44.33  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC---cC-C-CCCCccc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE---AI-P-VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~-~-~~~~~~D  196 (300)
                      .++.+||-.|  +|.|.....+++..+.+++++|.++..++.+++.    +.   ...+-..+..   .+ . .....+|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~---~~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GA---WQVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC---CEEEECCCccHHHHHHHHhCCCCce
Confidence            4678999998  4567777777765677999999998887777652    32   1111111110   00 0 1234699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+....       ...++.+.+.|+++|+++++..
T Consensus       212 ~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          212 VVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence            9997654       1246888999999999998764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.51  E-value=0.17  Score=43.99  Aligned_cols=93  Identities=17%  Similarity=0.315  Sum_probs=62.7

Q ss_pred             CCCeEEEEC-C-CCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec--ccC-cC-CCCCCcccE
Q 022248          125 KAKKVLEIG-I-GTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA--VGE-AI-PVSDASVDA  197 (300)
Q Consensus       125 ~~~~vLDiG-c-G~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--d~~-~~-~~~~~~~D~  197 (300)
                      ++.+||=+| + |.|.++..+++. .+.+|+++|.++..++.+++    .|..  .  ++..  +.. .+ ....+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad--~--vi~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH--H--VIDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS--E--EECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC--E--EEeCCCCHHHHHHHhcCCCceE
Confidence            567899988 4 468888888875 68899999999988777754    3321  1  1211  110 00 123457999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+...      .-...+..+.+.|+++|+++++.
T Consensus       243 vid~~------g~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          243 VFSTT------HTDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             EEECS------CHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEECC------CchhhHHHHHHHhcCCCEEEEEC
Confidence            98642      22345788999999999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.41  E-value=0.22  Score=42.83  Aligned_cols=93  Identities=23%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC------CCccc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS------DASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~D  196 (300)
                      .++.+||-+|+| .|.++..+++..+.+++++|.++..++.+++    .+..    .++  |..+..+.      .+.+|
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~~~--d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD----LVV--NPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS----EEE--CTTTSCHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC----EEe--cCCCccHHHHHHHHhCCCC
Confidence            467899999985 4667777777677899999999988877754    2321    111  21111100      04699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+.....      ...++...+.|+++|+++++..
T Consensus       233 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          233 AAVVTAVS------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC------HHHHHHHHHHhhcCCEEEEecc
Confidence            99864421      2356888899999999998764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.32  E-value=0.15  Score=44.20  Aligned_cols=95  Identities=14%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCccc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D  196 (300)
                      .++.+||-+|  .|.|..+..+++..+.+++++|.++..++.+++.    +..    ..+..+-.++.     ...+.+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~----~~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK----RGINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC----EEEeCCchHHHHHHHHHhCCCce
Confidence            5678999885  3467777788777788999999999888877653    321    11211111110     0135799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+....-.       .+....+.|+++|+++++...
T Consensus       238 vvid~~g~~-------~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          238 IILDMIGAA-------YFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             EEEESCCGG-------GHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEECCCHH-------HHHHHHHHhccCCEEEEEEec
Confidence            999754322       467788999999999987643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.30  E-value=0.2  Score=42.95  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||-.|+  |.|..+..++...+.+++++|.+++.++.+++.    +.   ... +..+-.+.     . .....+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~---~~~-~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GC---HHT-INYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TC---SEE-EETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---CEE-EECCCHHHHHHHHHHhCCCCC
Confidence            46789999995  667777777766778999999999877777542    32   111 11111110     0 112469


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+....-       ..++...+.|+++|+++.+...
T Consensus       216 d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          216 DVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             EEEEECSCT-------TTHHHHHHTEEEEEEEEECCCT
T ss_pred             eEEEECCcH-------HHHHHHHHhhccCCEEEEEecC
Confidence            999965432       2468888999999999987643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.24  E-value=0.13  Score=44.49  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D  196 (300)
                      .++.+||-+|+  |.|..+..+++..+.+++++|.++..++.+++    .+.   ...+-..+.+++.     ..++.+|
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG---EVFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC---CEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC---ceEEecCccHhHHHHHHHHhCCCCC
Confidence            56789999998  56777777776667899999998877766554    232   1111111111110     1112699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+.....      ...++.+.+.|+++|+++++...
T Consensus       241 ~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          241 GVINVSVS------EAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             EEEECSSC------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred             EEEECCCc------HHHHHHHHHHHhcCCEEEEEeCC
Confidence            99875432      23578899999999999987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.16  E-value=1.7  Score=31.56  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v  198 (300)
                      ..+|+=+|+|  .++..+++   ..+.+++++|.++..++.+++.         .+.++.+|..+..    ..-..+|+|
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~---------~~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE---------GFDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---------TCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC---------CCcEEECCCCCHHHHHhCCcccCCEE
Confidence            4578889984  46666554   3577999999999877766542         3567777775431    123468988


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +....  . ......+....+.+. ...++...
T Consensus        75 i~~~~--~-~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           75 LITGS--D-DEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EECCS--C-HHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEecC--C-HHHHHHHHHHHHHhC-CceEEEEE
Confidence            86442  1 111223334444455 55555533

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.98  E-value=0.16  Score=42.87  Aligned_cols=70  Identities=13%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCce---EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---C-CCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQ---VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---S-DASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~-~~~~D  196 (300)
                      ....+++|+-||.|.+...+... +.+   +.++|+++.+.+..+.+.       +...++.+|+.++..   + .+.+|
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-------~~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-------QGKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-------TTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-------CCCceeCCChHHccHHHhcccCCcC
Confidence            45678999999999999888653 433   589999999888776653       244577888877631   1 14699


Q ss_pred             EEEEc
Q 022248          197 AVVGT  201 (300)
Q Consensus       197 ~v~~~  201 (300)
                      +++..
T Consensus        86 ll~gg   90 (295)
T 2qrv_A           86 LVIGG   90 (295)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99964

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.77  E-value=0.048  Score=46.16  Aligned_cols=94  Identities=15%  Similarity=0.124  Sum_probs=61.3

Q ss_pred             cCCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcCCCCCCcccEEE
Q 022248          123 RGKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVV  199 (300)
Q Consensus       123 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~  199 (300)
                      ..++.+||-+|+  |.|..+..+++..+.+++++|.++..++.+++    .+..  .+  +..+- .++.-.-+.+|+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~--~~--~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--EA--ATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--EE--EEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC--EE--EECCcchhHHHHhcCceEEE
Confidence            357889999997  56778888887677899999998887777654    2321  11  21110 11100005699999


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      . ..-       ..++...+.|+++|+++.+..
T Consensus       195 d-~g~-------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG-------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC-------TTHHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH-------HHHHHHHHhhccCCEEEEEeC
Confidence            7 432       146888999999999988653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.69  E-value=0.11  Score=45.22  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+||-+|+| .|.++..+++..+.+++++|.+++.++.+++   ..|..  .+ +-..+.+.+.-..+.+|+|+-.-.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~--~v-i~~~~~~~~~~~~~g~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD--DY-VIGSDQAKMSELADSLDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS--CE-EETTCHHHHHHSTTTEEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc--ee-eccccHHHHHHhcCCCCEEEECCC
Confidence            67899999875 4566677776667799999998876666552   22321  22 111111111001136999996543


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      -..      .++...+.|+++|+++.+...
T Consensus       254 ~~~------~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          254 VHH------ALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             SCC------CSHHHHTTEEEEEEEEECSCC
T ss_pred             ChH------HHHHHHHHhccCCEEEEeCCC
Confidence            221      146778899999999987643

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.65  E-value=0.12  Score=44.46  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC---cC-C-CCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE---AI-P-VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~-~-~~~~~~D  196 (300)
                      .++.+||-+|+|. |.++.++++.. +.+++++|.++..++.+++    .|..  .  ++..+-.   .+ . .....+|
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~--~--~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD--A--AVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS--E--EEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--E--EEcCCCcHHHHHHHHhCCCCCe
Confidence            5788999999864 77777777643 7899999999988887765    3331  1  2211110   00 0 0123699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|+-.-.-      ...++...+.|+++|+++++....
T Consensus       242 ~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G~~~  273 (345)
T 3jv7_A          242 AVFDFVGA------QSTIDTAQQVVAVDGHISVVGIHA  273 (345)
T ss_dssp             EEEESSCC------HHHHHHHHHHEEEEEEEEECSCCT
T ss_pred             EEEECCCC------HHHHHHHHHHHhcCCEEEEECCCC
Confidence            99864321      235788999999999999986543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.57  E-value=0.074  Score=44.98  Aligned_cols=56  Identities=25%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             CCEEEEecccCc-CC-CCCCcccEEEEccccc----C----------------cccHHHHHHHHHHcccCCcEEEEEe
Q 022248          176 TNFKFLQAVGEA-IP-VSDASVDAVVGTLVLC----S----------------VKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       176 ~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~l~----~----------------~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .++.++++|..+ +. +++++||+|+++=-..    +                +.....++.++.++|||||.+++..
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            467899999876 32 5678999999852111    0                0112456789999999999998865

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=92.49  E-value=2.7  Score=41.46  Aligned_cols=71  Identities=7%  Similarity=0.044  Sum_probs=49.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---------------
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---------------  188 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------------  188 (300)
                      ...+++|+-||.|.+...+..... ..+.++|+++.+.+..+.+.       +...++.+|+..+               
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-------p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-------PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-------TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------CCCccccccHHHHhhhccchhhhhhhhh
Confidence            456899999999999988865332 35789999999888777663       3455565554221               


Q ss_pred             CC-CCCcccEEEEcc
Q 022248          189 PV-SDASVDAVVGTL  202 (300)
Q Consensus       189 ~~-~~~~~D~v~~~~  202 (300)
                      .+ ..+.+|+|+...
T Consensus       612 ~lp~~~~vDll~GGp  626 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGP  626 (1002)
T ss_dssp             BCCCTTTCSEEEECC
T ss_pred             hcccCCCeeEEEEcC
Confidence            11 135799999754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.20  E-value=0.32  Score=41.85  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             CCCeEEEEC-C-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc--cC-cC-CCCCCcccEE
Q 022248          125 KAKKVLEIG-I-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV--GE-AI-PVSDASVDAV  198 (300)
Q Consensus       125 ~~~~vLDiG-c-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d--~~-~~-~~~~~~~D~v  198 (300)
                      ++.+||=+| + |.|.++..+++..+++++++|.++..++.+++.    |..    .++..+  .. .+ ......+|+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~~~~~~~~~~g~Dvv  221 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD----IVLNHKESLLNQFKTQGIELVDYV  221 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS----EEECTTSCHHHHHHHHTCCCEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc----EEEECCccHHHHHHHhCCCCccEE
Confidence            678899884 4 457777788877788999999999888877763    321    112111  10 00 1123579999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +...      .....+..+.+.|+++|+++.+.
T Consensus       222 ~d~~------g~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          222 FCTF------NTDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EESS------CHHHHHHHHHHHEEEEEEEEESS
T ss_pred             EECC------CchHHHHHHHHHhccCCEEEEEC
Confidence            8642      22345688889999999997753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.16  E-value=0.14  Score=43.74  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             eEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEcccc
Q 022248          128 KVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVL  204 (300)
Q Consensus       128 ~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l  204 (300)
                      +||=.|+  |.|.++.++++..+.+++++|.++...+.+++.    |..  .+ +-..+.... ....+.+|+|+-.-. 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~v-i~~~~~~~~~~~~~~~~d~v~d~~g-  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN--RI-LSRDEFAESRPLEKQLWAGAIDTVG-  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS--EE-EEGGGSSCCCSSCCCCEEEEEESSC-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--EE-EecCCHHHHHhhcCCCccEEEECCC-
Confidence            4898886  577888888887788999999999888887653    321  11 111111111 123457998885321 


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                          .  ..+....+.|+|+|+++.+...
T Consensus       221 ----~--~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          221 ----D--KVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             ----H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred             ----c--HHHHHHHHHHhcCCEEEEEecC
Confidence                1  2678999999999999997643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.97  E-value=0.13  Score=44.81  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+||-+|+| .|.++..+++..+.+++++|.++..++.+++.   .|..  .+ +-..+.+.+.-..+.+|+|+....
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~--~v-~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD--SF-LVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS--EE-EETTCHHHHHHTTTCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc--eE-EeccCHHHHHHhhCCCCEEEECCC
Confidence            67899999875 35666677766778999999998776665532   2321  11 111111111101146999996543


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ...      .++...+.|+++|+++.+..
T Consensus       261 ~~~------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          261 AVH------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             SCC------CSHHHHHHEEEEEEEEECCC
T ss_pred             cHH------HHHHHHHHHhcCCEEEEEcc
Confidence            321      13667788999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.89  E-value=0.48  Score=42.53  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-------------
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------------  188 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-------------  188 (300)
                      .++.+||=+|+  |.|.++..+++..+.++++++.++.-++.+++.    |..    .++...-.++             
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE----AIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC----EEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc----EEEecCcCcccccccccccchHH
Confidence            56789999986  467788888887788999999999888877553    321    1121111100             


Q ss_pred             ---------C-CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          189 ---------P-VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       189 ---------~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                               . .....+|+|+-.-.     .  ..+....+.|+++|.++++..
T Consensus       299 ~~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          299 WKRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEEec
Confidence                     0 12247999986432     1  357888899999999998754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.81  E-value=0.024  Score=49.05  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=60.6

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCcccE
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~  197 (300)
                      ++.+||-+|+| .|.++..+++..+. +++++|.++..++.+++. .      +.  ++..+-+++.     .....+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a------~~--v~~~~~~~~~~~~~~~~~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A------DR--LVNPLEEDLLEVVRRVTGSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C------SE--EECTTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H------Hh--ccCcCccCHHHHHHHhcCCCCCE
Confidence            67899999985 36677777776777 899999998877666542 1      11  1111111110     01246999


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+....-      ...++...+.|+++|+++.+..
T Consensus       235 vid~~g~------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          235 LLEFSGN------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence            9864321      2356888999999999998764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.79  E-value=0.26  Score=42.64  Aligned_cols=95  Identities=11%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             CCC--CeEEEECC--CCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCC
Q 022248          124 GKA--KKVLEIGI--GTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDA  193 (300)
Q Consensus       124 ~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~  193 (300)
                      .++  .+||-.|+  |.|..+..+++..+. +++++|.++..++.+++.   .+.   .. .+...-.+.     ....+
T Consensus       157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~---~~-~~d~~~~~~~~~~~~~~~~  229 (357)
T 2zb4_A          157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF---DA-AINYKKDNVAEQLRESCPA  229 (357)
T ss_dssp             CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC---SE-EEETTTSCHHHHHHHHCTT
T ss_pred             CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC---ce-EEecCchHHHHHHHHhcCC
Confidence            466  89999997  566677777766777 999999998776666542   232   11 111111111     01122


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .+|+|+....       ...++...+.|+++|+++++..
T Consensus       230 ~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          230 GVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence            6999997543       1457889999999999998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.53  E-value=0.16  Score=43.38  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             CCC-eEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-CCCCCcccEE
Q 022248          125 KAK-KVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-PVSDASVDAV  198 (300)
Q Consensus       125 ~~~-~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~D~v  198 (300)
                      ++. +||-+|+  |.|.++..+++..+.++++++.++..++.+++    .|..  .+ +-..+.  +.+ ....+.+|+|
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~~-i~~~~~~~~~~~~~~~~~~d~v  220 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK--EV-LAREDVMAERIRPLDKQRWAAA  220 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS--EE-EECC---------CCSCCEEEE
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc--EE-EecCCcHHHHHHHhcCCcccEE
Confidence            443 7999996  56788888887777899999998877777654    3321  11 111111  101 1223469999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....-.       .+....+.|+++|+++++..
T Consensus       221 id~~g~~-------~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          221 VDPVGGR-------TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EECSTTT-------THHHHHHTEEEEEEEEECSC
T ss_pred             EECCcHH-------HHHHHHHhhccCCEEEEEee
Confidence            8654321       36788899999999998764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=91.25  E-value=2  Score=37.84  Aligned_cols=44  Identities=16%  Similarity=-0.098  Sum_probs=34.1

Q ss_pred             CCeEEEECCCCChhHHHhHhCC--Cce----EEEEcCCHHHHHHHHHHHH
Q 022248          126 AKKVLEIGIGTGPNLKYYAADT--DVQ----VLGVDPNRKMEKYAQTAAV  169 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~--~~~----~~giD~s~~~~~~a~~~~~  169 (300)
                      ..+|||+-||.|.+...+.+..  ...    +.++|+++.+++.-+.+..
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            4589999999999888886532  113    7789999999888877764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.19  E-value=0.46  Score=40.82  Aligned_cols=91  Identities=18%  Similarity=0.101  Sum_probs=61.6

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||-+|+  |.|.++..+++..+.+++++ .++..++.+++.    +..   .  +. +..++.      .....+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga~---~--i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GAT---P--ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TSE---E--EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CCC---E--ec-cCCCHHHHHHHHhcCCCc
Confidence            56789999994  56788888887778899999 788877766543    321   1  22 211110      123479


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+..-.-       ..+....+.|+++|.++++..
T Consensus       218 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          218 DLVYDTLGG-------PVLDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             EEEEESSCT-------HHHHHHHHHEEEEEEEEESCC
T ss_pred             eEEEECCCc-------HHHHHHHHHHhcCCeEEEEcc
Confidence            999864331       357888899999999998653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.89  E-value=0.59  Score=40.08  Aligned_cols=98  Identities=18%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCCCC-hhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-C-C-CCCCcccEE
Q 022248          124 GKAKKVLEIGIGTG-PNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-P-VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~v  198 (300)
                      .++.+||=+|+|.+ .++..+++ ..+.+|+++|.+++-++.+++.    +.. .-+.....|..+ + . .....+|.+
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~-~~i~~~~~~~~~~v~~~t~g~g~d~~  236 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD-VTINSGDVNPVDEIKKITGGLGVQSA  236 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS-EEEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe-EEEeCCCCCHHHHhhhhcCCCCceEE
Confidence            57889999999764 44445554 4678999999999877666543    321 011111112111 1 0 122356666


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....      -...+....+.|+++|.+++...
T Consensus       237 ~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          237 IVCAV------ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEecc------CcchhheeheeecCCceEEEEec
Confidence            64321      13457888899999999998764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.10  E-value=0.73  Score=39.10  Aligned_cols=92  Identities=18%  Similarity=0.184  Sum_probs=57.8

Q ss_pred             CCCCeEEEEC-C-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEE
Q 022248          124 GKAKKVLEIG-I-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiG-c-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~  200 (300)
                      .++.+||=+| + |.|.++..+++..+.++++++ ++...+.+++    .|..    .++...-.+ +.-.-..+|+|+-
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE----QCINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS----EEEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC----EEEeCCCcchhhhhccCCCEEEE
Confidence            5778999886 3 567888888887788999998 4544555443    3432    122211111 1111146999986


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .-.      -. .+....+.|+++|+++.+.
T Consensus       222 ~~g------~~-~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          222 LVG------GD-VGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             SSC------HH-HHHHHGGGEEEEEEEEECC
T ss_pred             CCC------cH-HHHHHHHhccCCCEEEEeC
Confidence            432      12 2378899999999999865

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=90.05  E-value=7.5  Score=37.38  Aligned_cols=45  Identities=13%  Similarity=0.003  Sum_probs=34.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC------CceEEEEcCCHHHHHHHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAA  168 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~~~giD~s~~~~~~a~~~~  168 (300)
                      .+..+|+|+-||-|.++.-+....      ...+.++|+++.+++..+.+.
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            345789999999999887775422      135779999999988887763

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.01  E-value=0.29  Score=41.84  Aligned_cols=56  Identities=18%  Similarity=0.124  Sum_probs=40.2

Q ss_pred             CCEEEEecccCc-CC-CCCCcccEEEEccc--cc------------CcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          176 TNFKFLQAVGEA-IP-VSDASVDAVVGTLV--LC------------SVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       176 ~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~--l~------------~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .+..++++|... +. +++++||+|++.=-  ..            ++......+.++.++|+|||.+++..
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~   84 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   84 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence            467888998764 33 56789999998421  11            11235678899999999999999965

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.78  E-value=4.9  Score=32.93  Aligned_cols=92  Identities=12%  Similarity=0.039  Sum_probs=58.8

Q ss_pred             CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++||=.| + |.++..+++   ..+.+|++++-++........         ..++++.+|+.++.  -..+|+|+....
T Consensus         6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH---------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh---------CCCeEEEecccccc--cCCCCEEEECCC
Confidence            5899999 4 888877765   356799999988765443332         36889999998866  467899997665


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .....+.  ..+++.+.+.-..-+++++..
T Consensus        73 ~~~~~~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           73 PDSGGDPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CBTTBCHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             ccccccHHHHHHHHHHHhhcCCceEEEEee
Confidence            5433322  233333333212224566544

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=89.61  E-value=0.85  Score=40.73  Aligned_cols=96  Identities=15%  Similarity=0.070  Sum_probs=62.6

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEeccc---------------
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVG---------------  185 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~---------------  185 (300)
                      .++.+||=.|+  |.|.++..+++..++++++++.++..++.+++    .|..  .+ .....+.               
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~~i~~~~~~~~~~~~~~~~~~~~~~  292 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCD--LVINRAELGITDDIADDPRRVVETG  292 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCC--CEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC--EEEecccccccccccccccccchhh
Confidence            57789999986  45777778887778899999999888777654    3332  11 1111111               


Q ss_pred             ----CcC-CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          186 ----EAI-PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       186 ----~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                          +.+ ......+|+|+....-       ..++...+.|+++|.++++..
T Consensus       293 ~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          293 RKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred             hHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence                000 0013469999864332       256788899999999999764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.47  E-value=0.37  Score=41.10  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCC-eEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--CcC-CCCCCcccEE
Q 022248          125 KAK-KVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EAI-PVSDASVDAV  198 (300)
Q Consensus       125 ~~~-~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~D~v  198 (300)
                      ++. +||-+|+  |.|.++..+++..+.++++++.+++.++.+++.    |..  .+ +-..+.  +.+ ....+.+|+|
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~--~v-~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS--EV-ISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS--EE-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc--EE-EECCCchHHHHHHhhcCCccEE
Confidence            443 7999996  567777788776677899999988777776542    321  11 111111  111 1223469998


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....     .  ..+....+.|+++|+++++..
T Consensus       222 id~~g-----~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          222 VDPVG-----G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             EECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence            86432     2  257888999999999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.31  E-value=1.2  Score=34.11  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CC-CCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PV-SDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~  195 (300)
                      .+.+|+=+|+|  .++..+++   .. +.+|+++|.++..++.+++    .+     +.++.+|..+.    .. .-..+
T Consensus        38 ~~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g-----~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           38 GHAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG-----RNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TTCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT-----CCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC-----CCEEEcCCCCHHHHHhccCCCCC
Confidence            35689988875  45555443   34 7799999999987766543    22     34455665331    11 13468


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+|+....-   ......+-...+.+.|++.++...
T Consensus       107 d~vi~~~~~---~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMPH---HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCSS---HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeCCC---hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            988874311   111222334556667777877754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.11  E-value=2.6  Score=35.88  Aligned_cols=97  Identities=19%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||=.|+|. |.++..+++..+. .++++|.++.-++.+++.    |..    ..+...-.+.+      .....+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~----~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM----QTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS----EEEETTTSCHHHHHHHHGGGCSS
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe----EEEeCCCCCHHHHHHhhcccCCc
Confidence            5788999999864 5566666665554 578999999887777653    321    22221111110      122457


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |+|+....      ....++...+.|++||.+++.....
T Consensus       231 d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          231 QLILETAG------VPQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             EEEEECSC------SHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             cccccccc------ccchhhhhhheecCCeEEEEEeccC
Confidence            88875432      1335688889999999999977544

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.44  E-value=1.1  Score=38.88  Aligned_cols=93  Identities=11%  Similarity=0.068  Sum_probs=59.5

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||=+|+  |.|.++..+++..+.+++++. ++.-++.+++    .|..    .++...-.++     ...++.+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~----~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE----EVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS----EEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc----EEEECCCchHHHHHHHHccCCcc
Confidence            46789999998  378888888887788999885 7776665543    3421    1222111111     11234599


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcc-cCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVL-KPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~  231 (300)
                      +|+-.-.-      ...+..+.+.| +++|+++.+.
T Consensus       234 ~v~d~~g~------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          234 YALDCITN------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEEESSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEEECCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence            99854321      23467778888 6999999865

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=88.25  E-value=3.2  Score=36.21  Aligned_cols=97  Identities=19%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      .+.+||.++-+-|.++..+.  ...+++.+.-|......    ++.+++.   ..+ ...   .....+.||+|+...--
T Consensus        45 ~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----l~~~~~~---~~~-~~~---~~~~~~~~d~v~~~~Pk  111 (381)
T 3dmg_A           45 FGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAFRC----LTASGLQ---ARL-ALP---WEAAAGAYDLVVLALPA  111 (381)
T ss_dssp             CSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHHHH----HHHTTCC---CEE-CCG---GGSCTTCEEEEEEECCG
T ss_pred             hCCcEEEecCCCCccccccC--CCCceEEEeCcHHHHHH----HHHcCCC---ccc-cCC---ccCCcCCCCEEEEECCc
Confidence            45789999999998877764  34577777555443322    5566664   122 111   22234689999975422


Q ss_pred             c-CcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          205 C-SVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       205 ~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      . .....+..|..+.+.|+|||.+++.....
T Consensus       112 ~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~  142 (381)
T 3dmg_A          112 GRGTAYVQASLVAAARALRMGGRLYLAGDKN  142 (381)
T ss_dssp             GGCHHHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             chhHHHHHHHHHHHHHhCCCCCEEEEEEccH
Confidence            1 11123567899999999999999987543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.67  E-value=0.24  Score=43.11  Aligned_cols=102  Identities=20%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             CCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+||=+|+| .|.....++...+.+|+++|.++..++.+++....      .+..+..+...+.-.-..+|+|+..-.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~~~~  239 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGAVL  239 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence            45899999984 23333444445667999999999888777654321      222221111111100125899986543


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ......+.-+.++..+.++|||+++-+..
T Consensus       240 ~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          240 VPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            32211111113556678999998887543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=87.22  E-value=6.9  Score=32.48  Aligned_cols=103  Identities=13%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CCCeEEEECCCC--C---hhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248          125 KAKKVLEIGIGT--G---PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----  190 (300)
Q Consensus       125 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  190 (300)
                      .++++|=.|++.  |   .++..|++ .+.+|+.++.++...+.+++.....+    ++.++.+|+.+..     +    
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAARE-AGAELAFTYQGDALKKRVEPLAEELG----AFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHH-TTCEEEEEECSHHHHHHHHHHHHHHT----CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcC----CceEEECCCCCHHHHHHHHHHHH
Confidence            567899888763  3   23344443 57789999998766555555544433    5788888886532     0    


Q ss_pred             -CCCcccEEEEcccccC-------c-----ccH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 -SDASVDAVVGTLVLCS-------V-----KDV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~-------~-----~~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       .-+.+|+++.+.....       +     .+.           ..+++.+...++.+|.++.+..
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence             1147999998765432       1     111           1345667777778899888764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=87.06  E-value=1  Score=39.16  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEE
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v  198 (300)
                      .++.+||=.|  .|.|.++..+++..+.++++++ ++...+.++    +.|..  .  ++..+-.++.   .....+|+|
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~----~lGa~--~--v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR----KLGAD--D--VIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH----HTTCS--E--EEETTSSCHHHHHHTSCCBSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH----HcCCC--E--EEECCchHHHHHHhhcCCCCEE
Confidence            4678999998  3567788888876778999998 666555553    33431  1  1211111110   011469999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....-     ....+....+.|+++|+++.+..
T Consensus       253 id~~g~-----~~~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          253 LDNVGG-----STETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             EESSCT-----THHHHGGGGBCSSSCCEEEESCC
T ss_pred             EECCCC-----hhhhhHHHHHhhcCCcEEEEeCC
Confidence            864322     11245677889999999988763

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.98  E-value=6.6  Score=27.99  Aligned_cols=90  Identities=11%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v  198 (300)
                      +.+|+=+|+  |..+..+++   ..+.+++++|.++..++.+++.   .     .+.++.+|..+..    ..-..+|+|
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~-----~~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I-----DALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C-----SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c-----CcEEEEcCCCCHHHHHHcCcccCCEE
Confidence            357888877  555555543   3567899999998776655432   1     3445566653321    112468998


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      +...-.   ......+..+.+.+.++ .+++
T Consensus        74 i~~~~~---~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           74 IAVTGK---EEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             EECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred             EEeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence            875321   12223445566667775 4444

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=86.69  E-value=5.4  Score=32.42  Aligned_cols=106  Identities=8%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCCeEEEECCC--CCh---hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248          125 KAKKVLEIGIG--TGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----  190 (300)
Q Consensus       125 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  190 (300)
                      .++++|=.|++  .|.   ++..|++ .+.+|+.++.+....+.+++.....+-  .++.++.+|+.+..     +    
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCCCCHHHHHHHHHHHH
Confidence            56788888876  332   3344443 577999999887666666655554432  26888999986642     0    


Q ss_pred             -CCCcccEEEEcccccC-------c-----ccHH-----------HHHHHHHHcccCCcEEEEEecc
Q 022248          191 -SDASVDAVVGTLVLCS-------V-----KDVD-----------MTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~-------~-----~~~~-----------~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                       .-+.+|+++.+.....       +     .+..           .+++.+...++++|.++++...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence             1146899987655432       1     1111           2456677778888998887643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.63  E-value=0.29  Score=42.82  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             CCCeEEEECCCCChhHHHh---HhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYY---AADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l---~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ++.+|+=+|+|  ..+..+   +...+.+|+++|.++..++.+++..   +.   .+.....+...+.-.-...|+|+..
T Consensus       167 ~g~~V~ViG~G--~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~---~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAG--TAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG---RIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT---SSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC---eeEeccCCHHHHHHHHcCCCEEEEC
Confidence            57899999984  444444   3346779999999998777665432   21   1111111111111001358999874


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -.......+.-+.++..+.+||||+++-+.
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            321110111112356778899999887764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.96  E-value=6.6  Score=32.22  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC------------HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN------------RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+.+|.+            ...++.+...+...+   .++.++.+|+.+..
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC---CceEEEEccCCCHH
Confidence            5678888887655 4444443   357899999987            666666666665554   47889999986532


Q ss_pred             -----C-----CCCcccEEEEcccccCc------ccH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          190 -----V-----SDASVDAVVGTLVLCSV------KDV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 -----~-----~~~~~D~v~~~~~l~~~------~~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                           +     .-+.+|+++.+......      .+.           ..+++.+...++.+|.++.+..
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence                 0     01478999976554321      111           1245667777788898888653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=85.84  E-value=0.22  Score=43.48  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=55.6

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-------------------
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-------------------  184 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-------------------  184 (300)
                      ++.+|+=+|+|. |.....++...+.+|+++|.++..++.+++.    |     ..|+..+                   
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l----G-----a~~~~l~~~~~~~~gya~~~~~~~~~  253 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV----G-----AQWLDLGIDAAGEGGYARELSEAERA  253 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT----T-----CEECCCC-------------CHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C-----CeEEeccccccccccchhhhhHHHHh
Confidence            568999999973 3444444445678999999999877776542    2     1222111                   


Q ss_pred             --cCcCCCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEE
Q 022248          185 --GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       185 --~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                        ...+.-.-...|+|+..-....-..+.-+-+++.+.+|||++++=+
T Consensus       254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv  301 (381)
T 3p2y_A          254 QQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL  301 (381)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred             hhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence              0011101156899996421111011111237888889999877654

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=85.77  E-value=20  Score=36.54  Aligned_cols=44  Identities=7%  Similarity=-0.005  Sum_probs=34.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHH
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAA  168 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~  168 (300)
                      ...+++|+-||.|.+...+..... ..+.++|+++.+.+..+.+.
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~  894 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN  894 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            457899999999999988865332 25789999999888777663

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=85.55  E-value=8.5  Score=31.49  Aligned_cols=105  Identities=15%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC-HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN-RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  190 (300)
                      ..++++|=.|++.| ++..+++   ..+.+|+.+|.. ....+...+.++..+   .++.++.+|+.+..     +    
T Consensus        29 l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~  104 (271)
T 3v2g_A           29 LAGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG---GRAVAIRADNRDAEAIEQAIRETV  104 (271)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHH
Confidence            46778888887655 4444443   357788888654 455565555555544   37888889886532     0    


Q ss_pred             -CCCcccEEEEcccccCcc--------cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 -SDASVDAVVGTLVLCSVK--------DV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       .-+..|+++.+.......        +.           ..+++.+.+.++++|.++++..
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence             114789999765543211        11           1345677778888898888754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.52  E-value=0.65  Score=40.45  Aligned_cols=99  Identities=21%  Similarity=0.224  Sum_probs=54.5

Q ss_pred             CCCeEEEECCCCChhHHHhH---hCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~---~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ++.+|+=+|+|  ..+..++   ...+.+|+++|.++..++.+++..   +.   .+.....+...+.-.-..+|+|+..
T Consensus       165 ~~~~V~ViGaG--~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~---~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGGG--TVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG---RVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT---SEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc---eEEEecCCHHHHHHHHhCCCEEEEC
Confidence            46889999984  4444443   356779999999998776665432   21   2222111111111001368999865


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -.......+.-+.+++.+.+++||.++.+.
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            432210111112467778889999887754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=85.37  E-value=6.4  Score=33.17  Aligned_cols=78  Identities=12%  Similarity=-0.029  Sum_probs=53.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~  191 (300)
                      .+++||=.|++.| ++..+++   ..+.+|++++.+...++.+.+.+...+.. .++.++..|+.+..     +     .
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSG-PEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            4668888887765 4444433   35779999999998888887777655432 37888999986532     0     1


Q ss_pred             CCcccEEEEcccc
Q 022248          192 DASVDAVVGTLVL  204 (300)
Q Consensus       192 ~~~~D~v~~~~~l  204 (300)
                      -+.+|+++.+...
T Consensus        85 ~g~id~lv~nAg~   97 (319)
T 3ioy_A           85 FGPVSILCNNAGV   97 (319)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            1478999987654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.27  E-value=3.4  Score=33.54  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----------S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----------~  191 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+.+|.++..++...+.+   +   .++.++.+|+.+..-          .
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G---PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C---CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            5678888887655 4444443   35779999999988777665544   1   378889999865420          1


Q ss_pred             CCcccEEEEcccccCcc--------cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          192 DASVDAVVGTLVLCSVK--------DV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      -+.+|+++.+.......        +.           ..+.+.+...++.+|.++.+..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            14789999765443221        11           1235666667777888888754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=84.89  E-value=2.3  Score=38.53  Aligned_cols=91  Identities=20%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..+++|+=+|+|. |.....+++..+.+|+++|.++...+.+++    .|.     .+  .+.++. .  ...|+|+...
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~Ga-----~~--~~l~e~-l--~~aDvVi~at  337 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EGF-----DV--VTVEEA-I--GDADIVVTAT  337 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC-----EE--CCHHHH-G--GGCSEEEECS
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-----EE--ecHHHH-H--hCCCEEEECC
Confidence            4788999999852 333333344467799999999987666543    232     22  222222 1  3689999754


Q ss_pred             cccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          203 VLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       203 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      .-.++-+     .+..+.+|+||+++.+...
T Consensus       338 gt~~~i~-----~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          338 GNKDIIM-----LEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             SSSCSBC-----HHHHHHSCTTCEEEECSSS
T ss_pred             CCHHHHH-----HHHHHhcCCCcEEEEeCCC
Confidence            3333211     3566778999999887643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=84.87  E-value=0.33  Score=42.78  Aligned_cols=42  Identities=19%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~  166 (300)
                      ++.+|+=+|+|. |.....++...+++|+++|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            568999999973 444444555678899999999987777654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.84  E-value=2.2  Score=37.78  Aligned_cols=92  Identities=11%  Similarity=0.128  Sum_probs=60.3

Q ss_pred             CCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v  198 (300)
                      ..+|+=+|+  |.++..+++   ..+..|++||.++..++.+++.         .+.++.+|+.+..    ..-...|+|
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~---------g~~vi~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF---------GMKVFYGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT---------TCCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC---------CCeEEEcCCCCHHHHHhcCCCccCEE
Confidence            457888887  455555554   4678999999999998887642         3456778876532    223568888


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++...-   ......+....+.+.|+..+++-.
T Consensus        73 iv~~~~---~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           73 INAIDD---PQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EECCSS---HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EECCCC---hHHHHHHHHHHHHhCCCCeEEEEE
Confidence            864311   122334566677788888887754

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=84.73  E-value=1.7  Score=37.36  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEE-cCCHHHHHHHHHHHHHcCCCCCCEEEEe-----cccCcCCCCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGV-DPNRKMEKYAQTAAVAAGLPLTNFKFLQ-----AVGEAIPVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~gi-D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~  195 (300)
                      .++.+||=+|+  |.|.++.++++..+++++++ +.++... ...+.++..|..  .+ +-.     .++.++--..+.+
T Consensus       166 ~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~-~~~~~~~~lGa~--~v-i~~~~~~~~~~~~~~~~~~~~  241 (357)
T 1zsy_A          166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQ-KLSDRLKSLGAE--HV-ITEEELRRPEMKNFFKDMPQP  241 (357)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHH-HHHHHHHHTTCS--EE-EEHHHHHSGGGGGTTSSSCCC
T ss_pred             CCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchH-HHHHHHHhcCCc--EE-EecCcchHHHHHHHHhCCCCc
Confidence            47789999996  57788888887666666555 4433211 111223334432  22 111     1111111111248


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+|+-.-.     . . .+.+..+.|+++|+++++.
T Consensus       242 Dvvid~~g-----~-~-~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          242 RLALNCVG-----G-K-SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SEEEESSC-----H-H-HHHHHHTTSCTTCEEEECC
T ss_pred             eEEEECCC-----c-H-HHHHHHHhhCCCCEEEEEe
Confidence            99985432     1 1 1245789999999999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.64  E-value=5.4  Score=33.30  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=54.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~  191 (300)
                      .+++||=.|++.| ++..+++   ..+.+|+++|.+...++.+.+.+...+   .++.++.+|+.+..     +     .
T Consensus        30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            5678888887655 4444443   357799999999998888877776654   37888999986642     0     0


Q ss_pred             CCcccEEEEccccc
Q 022248          192 DASVDAVVGTLVLC  205 (300)
Q Consensus       192 ~~~~D~v~~~~~l~  205 (300)
                      -+.+|+++.+....
T Consensus       106 ~g~id~lvnnAg~~  119 (301)
T 3tjr_A          106 LGGVDVVFSNAGIV  119 (301)
T ss_dssp             HSSCSEEEECCCCC
T ss_pred             CCCCCEEEECCCcC
Confidence            14789999876543

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=84.33  E-value=0.76  Score=33.66  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CCCCCcccEEEEccccc-C-cccHHHHHHHHHHcccCCcEEEE
Q 022248          189 PVSDASVDAVVGTLVLC-S-VKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       189 ~~~~~~~D~v~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .++++.||.|+...--. . ..-+..++..+.+.|||||.|..
T Consensus        54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            46789999999755333 2 22237889999999999999987

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.75  E-value=5  Score=32.59  Aligned_cols=105  Identities=10%  Similarity=0.019  Sum_probs=64.7

Q ss_pred             CCCCeEEEECCC-CChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----  190 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  190 (300)
                      .++++||=.|++ +|.++..+++   ..+.+|+.++.+....+.+++.....+    ++.++.+|+.+..     +    
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG----SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC----CcEEEECCCCCHHHHHHHHHHHH
Confidence            467889988875 2444555543   357799999988665555555444432    4678888886532     0    


Q ss_pred             -CCCcccEEEEcccccC-----------cc--cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 -SDASVDAVVGTLVLCS-----------VK--DV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~-----------~~--~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       .-+..|+++.+.....           ..  +.           ..+++.+...++++|.++++..
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence             1147899997655432           11  11           1245666667777888888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.29  E-value=4.1  Score=33.95  Aligned_cols=104  Identities=15%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             CCCeEEEECCCC-ChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----  190 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  190 (300)
                      .++++|=.|++. ..++..+++   ..+.+|+.+|.++...+.+++.....+    .+.++.+|+.+..     +     
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG----VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT----CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC----CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            567888888753 223333333   357799999998766666555554443    4578888886532     0     


Q ss_pred             CCCcccEEEEcccccCc------------ccH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 SDASVDAVVGTLVLCSV------------KDV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~------------~~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .-+.+|+++.+......            .+.           ..+++.+...++.+|.++.+..
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            11478999987654321            111           1245666777778899888764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.20  E-value=7.8  Score=32.10  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHH-HHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRK-MEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  190 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+.+|.+.. ..+...+..+..+   .++.++.+|+.+..     +     
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG---VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT---CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678888887655 4444443   35779999998764 3444444444443   37888999986532     0     


Q ss_pred             CCCcccEEEEcccccC----c-----ccH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 SDASVDAVVGTLVLCS----V-----KDV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~----~-----~~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .-+.+|+++.+.....    +     .+.           ..+++.+.+.++.+|.++.+..
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            1146899997644321    1     111           1345677777888898887653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=83.09  E-value=8.3  Score=31.98  Aligned_cols=105  Identities=15%  Similarity=0.046  Sum_probs=65.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC--HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~----  190 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+.+|.+  ....+...+.++..+   .++.++.+|+.+..     +    
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG---RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT---CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHH
Confidence            5678888887654 4444443   357789999876  344555555555544   37888888886532     0    


Q ss_pred             -CCCcccEEEEcccccC----cc-----cH-----------HHHHHHHHHcccCCcEEEEEecc
Q 022248          191 -SDASVDAVVGTLVLCS----VK-----DV-----------DMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       191 -~~~~~D~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                       .-+..|+++.+.....    +.     +.           ..+++.+...++.+|.++.+...
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence             1147899997665432    11     11           13456777778888998887643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=82.26  E-value=7.1  Score=31.69  Aligned_cols=106  Identities=10%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             CCCeEEEECCCC--C--h-hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------
Q 022248          125 KAKKVLEIGIGT--G--P-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------  189 (300)
Q Consensus       125 ~~~~vLDiGcG~--G--~-~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------  189 (300)
                      +++++|=-|++.  |  . .+..|+ ..+++|+.+|.++..++.+.+.+++.+-  .++.++.+|+.+..          
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERSRKELEKLLEQLNQ--PEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHGGGTC--SSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            678888888532  3  2 333444 3678999999999888888877766543  36788888886531          


Q ss_pred             CCCCcccEEEEcccccCc-------c-----cHH-----------HHHHHHHHcccCCcEEEEEecc
Q 022248          190 VSDASVDAVVGTLVLCSV-------K-----DVD-----------MTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~-------~-----~~~-----------~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      -.-+..|+++.+......       .     +..           ...+.....++.+|.++.+...
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence            012678999876543211       1     111           1234455667889998887643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=82.08  E-value=0.45  Score=41.99  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHH
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQ  165 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~  165 (300)
                      ++.+|+=+|+|. |.....++...+.+|+++|.++..++.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            478999999863 33444445556789999999988776653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.05  E-value=2.8  Score=31.14  Aligned_cols=95  Identities=13%  Similarity=-0.018  Sum_probs=52.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---C-CCCCccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---P-VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~-~~~~~~D  196 (300)
                      .++.+|+=+|+|  .++..+++   ..+.+|+++|.++..++.++.   .     ..+.++.+|..+.   . ..-..+|
T Consensus        17 ~~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~-----~g~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           17 QKSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E-----FSGFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T-----CCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cCCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c-----CCCcEEEecCCCHHHHHHcCcccCC
Confidence            356789999875  44444433   456799999998875544321   1     1234555554321   1 1124689


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|+....-   +.....+..+.+.+.+...++...
T Consensus        87 ~Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           87 MVFAFTND---DSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             EEEECSSC---HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEEeCC---cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            88875321   122233444555556666666544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=81.88  E-value=0.55  Score=41.13  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHH
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~  166 (300)
                      ++.+|+=+|+|. |.....++...+.+|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            678999999863 334444455567789999999876666543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=81.83  E-value=4.9  Score=32.54  Aligned_cols=104  Identities=15%  Similarity=0.062  Sum_probs=64.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh---C-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---D-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  191 (300)
                      ++++||=.| |+|.++..+++   . .+.+|++++.+....+...+.+...+   .++.++.+|+.+..     +.    
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            356677555 55666666654   3 57799999998877776666665543   36788888886532     00    


Q ss_pred             -CCcccEEEEcccccCc--------ccH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          192 -DASVDAVVGTLVLCSV--------KDV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       192 -~~~~D~v~~~~~l~~~--------~~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                       -+.+|+|+.+......        .+.           ..+++.+.+.++++|.++++..
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence             1368999976543211        111           1245566666667788887653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=81.83  E-value=0.7  Score=39.73  Aligned_cols=91  Identities=5%  Similarity=0.012  Sum_probs=55.5

Q ss_pred             CeEEEE-CC-CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcccEE
Q 022248          127 KKVLEI-GI-GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASVDAV  198 (300)
Q Consensus       127 ~~vLDi-Gc-G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D~v  198 (300)
                      .+||=. |+ |.|.++..+++..+++++++|.++.-++.+++.    |..    ..+..+-.++.      .....+|+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~----~~~~~~~~~~~~~v~~~~~~~g~D~v  237 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GAA----HVLNEKAPDFEATLREVMKAEQPRIF  237 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TCS----EEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC----EEEECCcHHHHHHHHHHhcCCCCcEE
Confidence            456543 33 356666677766678999999999888777643    321    12221111110      011369999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +-...-       ..+..+.+.|+++|+++++..
T Consensus       238 id~~g~-------~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          238 LDAVTG-------PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EESSCH-------HHHHHHHHHSCTTCEEEECCC
T ss_pred             EECCCC-------hhHHHHHhhhcCCCEEEEEec
Confidence            864322       124778899999999999763

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=80.76  E-value=5.2  Score=32.49  Aligned_cols=76  Identities=14%  Similarity=-0.031  Sum_probs=48.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcC-CHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CC----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDP-NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~----  191 (300)
                      .+++||=.|+ +|.++..+++   ..+.++++++. ++..++...+.++..+   .++.++.+|+.+..     +.    
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4567886665 5556666554   35678999988 7776666655555443   36888888886532     10    


Q ss_pred             -CCcccEEEEcccc
Q 022248          192 -DASVDAVVGTLVL  204 (300)
Q Consensus       192 -~~~~D~v~~~~~l  204 (300)
                       -+.+|+|+.+...
T Consensus        96 ~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           96 HFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHSCEEEEECCCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1368999876543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=80.71  E-value=4.4  Score=32.96  Aligned_cols=104  Identities=11%  Similarity=0.029  Sum_probs=63.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEE-cCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----C-----
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGV-DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~gi-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----  190 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+.+ +.+....+.+.+.++..+   .++.++.+|+.+..     +     
T Consensus         7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG---RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT---SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678888887665 4444433   357788887 666666666666665444   36788888886532     0     


Q ss_pred             CCCcccEEEEccccc-C---cc-----cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          191 SDASVDAVVGTLVLC-S---VK-----DV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~-~---~~-----~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .-+..|+++.+.... .   +.     +.           ..+.+.+...++++|.++.+..
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            014789999765432 1   11     11           1245666667777888887653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=80.70  E-value=13  Score=30.82  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC------------HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN------------RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .++++|=.|++.| ++..+++   ..+.+|+++|.+            ...++.+.+.+...+   .++.++.+|+.+..
T Consensus        27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG---RRIIASQVDVRDFD  102 (299)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC---CceEEEECCCCCHH
Confidence            5678888887665 4444433   357899999987            666666666665554   47889999986532


Q ss_pred             -----C-----CCCcccEEEEcccc
Q 022248          190 -----V-----SDASVDAVVGTLVL  204 (300)
Q Consensus       190 -----~-----~~~~~D~v~~~~~l  204 (300)
                           +     .-+..|+++.+...
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence                 0     11478999976553

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=80.69  E-value=12  Score=30.78  Aligned_cols=78  Identities=13%  Similarity=-0.010  Sum_probs=53.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C----C------
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P----V------  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~----~------  190 (300)
                      .+++||=.|++.| ++.++++   ..+.+|++++.+....+.+.+.+...+-  .++.++.+|+.+. .    +      
T Consensus        11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH--ENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC--CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEccCCCcHHHHHHHHHHHHH
Confidence            4567777776544 5555543   3577999999999888777777665542  4789999998764 2    0      


Q ss_pred             CCCcccEEEEccccc
Q 022248          191 SDASVDAVVGTLVLC  205 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~  205 (300)
                      .-+.+|+++.+....
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            114799999877654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=80.57  E-value=14  Score=33.07  Aligned_cols=96  Identities=20%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             CeEEEECCCC-Ch-hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHH-------cC------CCCCCEEEEecccCcCCCC
Q 022248          127 KKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-------AG------LPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       127 ~~vLDiGcG~-G~-~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~-------~~------~~~~~~~~~~~d~~~~~~~  191 (300)
                      .+|.=||+|. |. ++..++ ..+.+|+++|.+++.++.+++.+..       .+      .......+ ..|.+.+   
T Consensus        38 ~kV~VIGaG~MG~~iA~~la-~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~---  112 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL---  112 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence            4688898875 22 233333 4577999999999988887664321       11      00011222 3343222   


Q ss_pred             CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                       ...|+|+..- .....-...+++++...++|+.+++.
T Consensus       113 -~~aDlVIeaV-pe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          113 -STVDLVVEAV-FEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             -TTCSEEEECC-CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -CCCCEEEEcC-CCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence             3579888643 22221235678888888988876553

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=80.55  E-value=7.9  Score=30.64  Aligned_cols=72  Identities=19%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCE-EEEecccC-cCCCCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGE-AIPVSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~-~~~~~~~~~D~v~  199 (300)
                      .+++||=.|+ +|.++..+++   ..+.+|++++-++..++....         ..+ .++.+|+. .+.-.-+.+|+|+
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE---------RGASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH---------TTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh---------CCCceEEEcccHHHHHHHHcCCCEEE
Confidence            5678887774 5555655554   357799999998876544332         256 78888875 2211124689999


Q ss_pred             EcccccC
Q 022248          200 GTLVLCS  206 (300)
Q Consensus       200 ~~~~l~~  206 (300)
                      .......
T Consensus        90 ~~ag~~~   96 (236)
T 3e8x_A           90 FAAGSGP   96 (236)
T ss_dssp             ECCCCCT
T ss_pred             ECCCCCC
Confidence            8766543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=80.07  E-value=1.2  Score=37.95  Aligned_cols=55  Identities=18%  Similarity=0.118  Sum_probs=36.6

Q ss_pred             CEEEE-ecccCcC--CCCCCcccEEEEcc--cc---------cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          177 NFKFL-QAVGEAI--PVSDASVDAVVGTL--VL---------CSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       177 ~~~~~-~~d~~~~--~~~~~~~D~v~~~~--~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ...++ ++|....  .+++++||+|++.=  ..         .++......+.++.++|+|||.+++..
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~  106 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG  106 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            35566 7887542  24567899999731  11         111234567889999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	9e-15
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-13
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	6e-13
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	2e-12
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-11
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-10
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-10
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	3e-10
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	1e-09
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-09
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	5e-08
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	8e-08
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-07
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-07
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-06
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	4e-06
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	4e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	4e-05
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	7e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-04
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	2e-04
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	2e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-04
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	4e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	5e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.002
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	0.003
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.004

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.1 bits (173), Expect = 9e-15
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 89  PDWY-EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAAD 146
           PD Y +   A V    +    +  A YK+ L   LR     +VL++  GTG +      +
Sbjct: 18  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV-E 76

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA------IPVSDASVDAVVG 200
               V  VD + KM KYA              K++            +P  D     +  
Sbjct: 77  EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 136

Query: 201 TLVLC-------SVKDVDMTLQEVRRVLKPGGIYLF 229
                          +  + L+ +  +++PGG+ + 
Sbjct: 137 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.5 bits (161), Expect = 2e-13
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
            +VL+IG G G     ++     + +GVD  ++M + A +   A    + N +F Q   E
Sbjct: 18  HRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASS--FAQEKGVENVRFQQGTAE 74

Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN 246
           ++P  D S D +          DV   ++EV RVLK  G +L V+H A +D   L  + N
Sbjct: 75  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED-PVLDEFVN 133

Query: 247 VVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
            ++ L+           +     S    +  ++
Sbjct: 134 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 166

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 65.3 bits (158), Expect = 6e-13
 Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 114 YKSQLFDNLRG--KAKKVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAV 169
           Y S L + +    K   +++ G G G              +  G+D    +   A+    
Sbjct: 14  YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73

Query: 170 AAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
                    +      E         D  +    L  +   +  LQ++   +K GG  + 
Sbjct: 74  LLPYDSEFLEGDATEIELND----KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 129

Query: 230 VEH-------------VAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS 276
            E                  +   L   Q + +   Q      ++  +    +SE G  +
Sbjct: 130 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKN 189

Query: 277 VE 278
           +E
Sbjct: 190 IE 191

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 63.6 bits (153), Expect = 2e-12
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
               E+Y ++    ++  +AE+   +    ++ + + ++VL++  GTG       A+   
Sbjct: 6   TLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL-AERGY 64

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           +V+G+D + +M + A+  A    L +   +            DA       T++    +D
Sbjct: 65  EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT-MFFSTIMYFDEED 123

Query: 210 VDMTLQEVRRVLKPGGIYLF 229
           +     +V   LKPGG+++ 
Sbjct: 124 LRKLFSKVAEALKPGGVFIT 143

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 24/207 (11%)

Query: 92  YEEFYASVMNSS-----MKSY-EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA 145
           Y E +   +N S     M+ + + ++ G   ++ D       K+L IG G G       +
Sbjct: 3   YVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI--KILSIGGGAGEIDLQILS 60

Query: 146 -------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-------GEAIPVS 191
                     +    V+P+ +     +                                 
Sbjct: 61  KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120

Query: 192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPL 251
               D +    +L  VKD+  TL+    +L      L +    +    + K W+      
Sbjct: 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV--SGSSGWDKLWKKYGSRF 178

Query: 252 QQIVSDGCHLTRQTGNNISEAGFSSVE 278
            Q        +      +   G     
Sbjct: 179 PQDDLCQYITSDDLTQMLDNLGLKYEC 205

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
             ++VL++  G G     +A     +V+  D    + K A+             +++Q  
Sbjct: 15  GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGN--GHQQVEYVQGD 71

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW 244
            E +P +D     V   +      +    + E  RVLK GG  L V++ A ++  F   +
Sbjct: 72  AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF-DVF 130

Query: 245 QNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
            N V+  +                + EAGF   EL
Sbjct: 131 YNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 8/154 (5%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
            ++L++G G+G  L  +A D  +   G+D +      A+  A      ++          
Sbjct: 35  TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL--GVSERVHFIHNDA 92

Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQN 246
           A  V++   D                  + + + LKPGGI L  E    +     +  Q 
Sbjct: 93  AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQA 152

Query: 247 VVDPLQQIVSDGCHLT-RQTGNNISEAGFSSVEL 279
                  + S    LT         + G+  VE+
Sbjct: 153 C-----GVSSTSDFLTLPGLVGAFDDLGYDVVEM 181

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 18/180 (10%)

Query: 104 MKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
           M+ +E     Y   L      K  +VLE+G G              +   ++ N  + + 
Sbjct: 35  MERWETP---YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR 91

Query: 164 AQTAA----VAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRR 219
            +  A             ++ +              D    +         +       R
Sbjct: 92  LRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFR 151

Query: 220 VLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
           +LKPGG+  +    +  +       ++    +                 + EAGF    +
Sbjct: 152 LLKPGGVLTYCNLTSWGE-----LMKSKYSDI------TIMFEETQVPALLEAGFRRENI 200

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
              + L++G G G N  Y A            ++     A    + A   L N +     
Sbjct: 30  APGRTLDLGCGNGRNSLYLA---ANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVD 86

Query: 185 GEAIPVSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG 238
              +       D ++ T+V+  +  + +   +  ++R  KPGG  L V  +   D 
Sbjct: 87  LNTLTFDG-EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF 141

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (128), Expect = 4e-09
 Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 39/203 (19%)

Query: 37  LCG------GKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPD 90
           LC         S  C  R  F       +  L        +  P DS  M+      R  
Sbjct: 6   LCHQPLSREKNSYICPQRHQFDMAKEGYVNLLP--VQHKRSRDPGDSAEMMQA----RRA 59

Query: 91  WYEE-FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TD 148
           + +   Y  + ++ +            QL + L  KA  VL+IG G G     +A    +
Sbjct: 60  FLDAGHYQPLRDAIVA-----------QLRERLDDKATAVLDIGCGEGYYTHAFADALPE 108

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK 208
           +   G+D ++   K A               F  A    +P SD S+DA++     C   
Sbjct: 109 ITTFGLDVSKVAIKAAAK-------RYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159

Query: 209 DVDMTLQEVRRVLKPGGIYLFVE 231
                 +E+ RV+KPGG  +   
Sbjct: 160 -----AEELARVVKPGGWVITAT 177

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 50.8 bits (120), Expect = 5e-08
 Identities = 30/247 (12%), Positives = 68/247 (27%), Gaps = 39/247 (15%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
           + Y +F   Y  ++ + +  Y+     +  +            L++  GTG   +     
Sbjct: 1   NCYNKFAHIYDKLIRADV-DYKKWSD-FIIEKCVENNLVFDDYLDLACGTGNLTENL-CP 57

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206
                  VD +++M   A+    + GL         +        D     +  T  +  
Sbjct: 58  KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117

Query: 207 VKDVDMTLQEVRRVLKPGGIYLF-------------VEHVAAKDGTFLKFWQNVVDPLQQ 253
             D+    + V   LK GG+++F                    D     +W+N  +    
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLV 177

Query: 254 I------VSDGCHLTRQTGNN-------------ISEAGFSSVELGNAF-LSNASLISPH 293
                  V DG    R    +             +     + ++  + +        +  
Sbjct: 178 SMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTER 237

Query: 294 VYGIAHK 300
           +  +   
Sbjct: 238 ITYLVKL 244

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 49.9 bits (118), Expect = 8e-08
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 103 SMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK 162
           ++++    +   K+ L      +   VL++G G G +L  Y      +  GVD       
Sbjct: 5   NIRNANNFI---KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 61

Query: 163 YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ----EVR 218
            A+  A         F   Q             D +              +L      + 
Sbjct: 62  DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIA 121

Query: 219 RVLKPGGIYLFVEHVAAKDGTFLKFWQN 246
           R L+PGG   F+  V ++D    ++ Q 
Sbjct: 122 RHLRPGGY--FIMTVPSRDVILERYKQG 147

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
           GK    +++G GTG  +    A    +V  +D N +     +      GL   N   ++ 
Sbjct: 32  GKNDVAVDVGCGTG-GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEG 89

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKF 243
                      +D  V   V  S  ++   L+ ++  LKPGG  +    +       ++ 
Sbjct: 90  DAPEALCKIPDIDIAV---VGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMEC 146

Query: 244 WQNV---VDPLQQIVSDGCHLTRQT 265
            +++   V+  +  ++ G  L R T
Sbjct: 147 LRDLGFDVNITELNIARGRALDRGT 171

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 25/176 (14%), Positives = 56/176 (31%), Gaps = 26/176 (14%)

Query: 81  LNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYK---------------SQLFDNLR-G 124
           +     P           V N S+ +   ++  Y+               +Q+ D ++  
Sbjct: 92  MKLNTRPSTGLLRHILQQVYNHSV-TDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMT 150

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQ-VLGVDPN-------RKMEKYAQTAAVAAGLPLT 176
                +++G G G  +   AA T+ +   GV+           M++  +      G    
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 177 NFKFLQAVGEAIPVSDASVDA-VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE 231
            +   +    +    +   +  V+         +VD  L+E    +K GG  +  +
Sbjct: 211 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 15/170 (8%)

Query: 108 EAEVAGYKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166
           ++EV     Q + +L      +VL    G   ++ + +      V+G + +    +   T
Sbjct: 2   QSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFT 60

Query: 167 AAVAAGLPLTNFKFLQAVGEAIPV-----------SDASVDAVVGTLVLCSVKDVDM--T 213
                    +   F       I +                 A      + ++        
Sbjct: 61  ERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERY 120

Query: 214 LQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTR 263
           +Q +  ++      L +     +       +      L +++S    +T+
Sbjct: 121 VQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTK 170

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 24/214 (11%), Positives = 52/214 (24%), Gaps = 48/214 (22%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
           + F     +   +++IG G        A D+   +   D   +  +  +           
Sbjct: 43  KTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYD 102

Query: 177 NFKFLQAV--------------------------------GEAIPVSDASVDAVVGTLVL 204
               ++                                      P      D V+  L +
Sbjct: 103 WTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM 162

Query: 205 CSV----KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCH 260
                        L  +  +LKPGG  +    +        K   +              
Sbjct: 163 ECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC-----------VA 211

Query: 261 LTRQT-GNNISEAGFSSVELGNAFLSNASLISPH 293
           L +      + +AGF   +L ++  S +   + +
Sbjct: 212 LEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAAN 245

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 20/196 (10%), Positives = 55/196 (28%), Gaps = 25/196 (12%)

Query: 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGL 173
           S ++   +  K    +++G G G  +   A +       G +                  
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKK 265

Query: 174 PL---------TNFKFLQAVGEAIPVSDASVDAVVGTLV-LCSVKDVDMTLQEVRRVLKP 223
                        F   ++  +   V++      V  +      +D++  ++++ +  K 
Sbjct: 266 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV 325

Query: 224 GGIYLFVEHVAAKDGTFLKFWQNVVDPLQQI-----VSDGCHLTRQTG--------NNIS 270
           G   + ++ + +       +    +    ++       D    T   G         ++ 
Sbjct: 326 GCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVD 385

Query: 271 EAGFSSVELGNAFLSN 286
           E+ FS    G      
Sbjct: 386 ESLFSPAARGRRNRGT 401

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 90  DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADT 147
           D+Y + Y    ++  M         Y++ +  N    K K VL++G GTG    + A   
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGTLVLC 205
              V+GVD +  + + A+      G           + +          + +      L 
Sbjct: 61  AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119

Query: 206 SVKDVDMTLQEVRRVLKPGGIYLFVEHV 233
               +D  L      L  GG+    +  
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCS 147

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 16/168 (9%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +   +LE+G   G        +    +  V+ + +   +AQ         L +       
Sbjct: 20  RPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQG-------RLKDGITYIHS 71

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEV-RRVLKPGGIYLFVEHVAAKDGTFLKF 243
                      D +V T VL  + D    L+ +    L  GG    V   A      +  
Sbjct: 72  RFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAV 131

Query: 244 WQNVVDPLQQIVSDG---CHLTRQTGNNI----SEAGFSSVELGNAFL 284
              ++     +        H      + +    S AG         F 
Sbjct: 132 KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFF 179

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
           ++Y  F     + + + Y + +   +  L   ++ K  KVL++  G G            
Sbjct: 4   EYYRVFPTY-TDINSQEYRSRIETLEPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGFE 61

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV-- 207
            V        + K  + A        +N +F+      +   D + D V+    +     
Sbjct: 62  VVGVDISEDMIRKAREYAKS----RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 117

Query: 208 KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP----LQQIVSDGCHLTR 263
            +++   +EVRRVLKP G ++   +         +  +++V      + +++ D    T 
Sbjct: 118 LELNQVFKEVRRVLKPSGKFIM--YFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTV 175

Query: 264 QTGNNISEAGFSSVELGNAFLSNASLISPHVY 295
                  +  F  V       +   L++   +
Sbjct: 176 VIEFKSEQDSF-RVRFNVWGKTGVELLAKLYF 206

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 12/145 (8%)

Query: 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG 172
           Y++ +F N    K K VL++G GTG    + A     +V+G++ +   +   +    A  
Sbjct: 21  YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVK-ANK 79

Query: 173 LPLTNFKFLQAVG--EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYL-- 228
           L          V   E        + +      L     ++  L    + L P G+    
Sbjct: 80  LDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 139

Query: 229 -FVEHVAAKDGTFLK-----FWQNV 247
               +V A +    K     +W+NV
Sbjct: 140 RATLYVTAIEDRQYKDYKIHWWENV 164

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 128 KVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
           K+L +G   G    + A       V  ++   ++ +        A         L    +
Sbjct: 77  KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--DACAERENIIP-ILGDANK 133

Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT 239
               ++      V    +      ++ ++  +  LK GG  +      + D T
Sbjct: 134 PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT 186

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 18/116 (15%)

Query: 127 KKVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQ-----------TAAVAAGL 173
             VLE G G+G    + +    +  +V+  +  +     A+            + V    
Sbjct: 100 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
              +F      G    +   + DAV        + +  +TL      LK GG+   
Sbjct: 160 DNVDFIHKDISGATEDIKSLTFDAVA-----LDMLNPHVTLPVFYPHLKHGGVCAV 210

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
           + V+++  G G      A     +V+ ++ +    K+         +             
Sbjct: 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNR 167

Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKD 237
             P  +   D +    ++  V      + +   + K G I  +   V  K 
Sbjct: 168 DFP-GENIADRI----LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKL 213

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 16/174 (9%)

Query: 80  MLNRLHPPRPDWYE---EFYASV--MNSSM-----KSYEAEVAGYKSQLFDNLRGKAKKV 129
           +   L+ P   WY    E++ +V    S +       ++ ++ G ++ +         + 
Sbjct: 38  LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA 97

Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           L+ G G G   K            ++P + M + A+         +   KF+ A  E   
Sbjct: 98  LDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA----GMPVGKFILASMETAT 153

Query: 190 VSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFL 241
           +   + D +V       +   D     +  ++ L P G   F E+ +  D   +
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
           +          KVL++G G+G  L   A     + LGVD +  +   A+  A   G+   
Sbjct: 112 KALARHLRPGDKVLDLGTGSG-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPR 170

Query: 177 NFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
                    E    +          +     +         R  L PGG  L 
Sbjct: 171 FL-------EGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALL 216

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG 172
           Y+  ++ N    K K VL++G GTG    + A     +VLGVD +  + +      +   
Sbjct: 23  YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL 82

Query: 173 LPLTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226
                   ++   E + +       + +      L     +D  L    + L  GG 
Sbjct: 83  ED--TITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 137

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 12/133 (9%)

Query: 110 EVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAA 168
           E       LF N        +E+G G G  +   A  + D+  +G+D  + +  YA    
Sbjct: 19  EAKAKWRDLFGN---DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKV 75

Query: 169 VAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMT--------LQEVRRV 220
           +  G+P     ++          D  +D +         K             L   +R+
Sbjct: 76  LEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRI 135

Query: 221 LKPGGIYLFVEHV 233
           L   G   F    
Sbjct: 136 LPENGEIHFKTDN 148

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 127 KKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYA-QTAAVAAGLPLTNFKFLQA 183
            +VLE G G+G              QV+  +      ++A +  +   G P  N++ + +
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGI 226
                 + D SVD  V       +      L  V R+L  GG+
Sbjct: 158 DLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGV 195

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
           +VL +G  +G  + + A    +  +  V+ + K  +              N   L     
Sbjct: 59  RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR----ERNNIIPLLFDAS 114

Query: 187 AIPVSDASVDAV-VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT 239
                   V+ V +    +     +++        LK  G  + +    + D T
Sbjct: 115 KPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDST 168

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 26/232 (11%), Positives = 53/232 (22%), Gaps = 51/232 (21%)

Query: 89  PDWY-EEFYASVMNSSMKSYEAE--VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA 145
           P  Y    YA                    +Q F       + +++IG G        A 
Sbjct: 15  PRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSAC 74

Query: 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE------------------- 186
                +   D      +                 + Q                       
Sbjct: 75  SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 134

Query: 187 ---------------AIPVSDASVDAVVGTLVLCSV----KDVDMTLQEVRRVLKPGGIY 227
                          A   +    DA+V    L +V          L  +  +L+PGG  
Sbjct: 135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHL 194

Query: 228 LFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL 279
           L +  +   + ++    +  +  +            +    +  +G+   +L
Sbjct: 195 LLIGAL---EESWYLAGEARLTVV-------PVSEEEVREALVRSGYKVRDL 236

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 26/202 (12%)

Query: 94  EFYASV------MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT 147
           EFY  +      M  +   ++           +       +VL++G GT      +  + 
Sbjct: 7   EFYDRIARAYDSMYETP-KWKLYHR-LIGSFLEEYLKNPCRVLDLGGGT-GKWSLFLQER 63

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV 207
             +V+ VDP+++M + A+                    +    S A    +    VL  V
Sbjct: 64  GFEVVLVDPSKEMLEVARE-------KGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116

Query: 208 KDVDMTLQEVRRVLKPGGI--------YLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSD 257
           ++ D    E+RRVL P G+        Y F++ +  KD      +F +     +   +  
Sbjct: 117 ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFS 176

Query: 258 GCHLTRQTGNNISEAGFSSVEL 279
                 +  +  S  GF +V++
Sbjct: 177 FNSYAFKPEDLDSLEGFETVDI 198

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
            +LE+G+G+G    Y     +    +  V+ +    K A      +              
Sbjct: 88  DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM--DNLSEFYDIGNVRTSRSD 145

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF 229
            A  +SD   DAV+       + D    +Q++  ++KPG +  F
Sbjct: 146 IADFISDQMYDAVI-----ADIPDPWNHVQKIASMMKPGSVATF 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.94
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.93
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.93
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.92
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.91
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.91
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.9
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.89
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.88
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.88
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.88
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.87
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.87
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.87
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.87
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.86
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.86
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.85
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.84
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.84
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.83
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.81
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.77
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.77
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.76
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.76
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.74
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.74
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.71
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.7
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.7
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.7
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.68
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.68
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.68
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.66
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.65
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.65
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.63
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.63
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.61
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.6
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.58
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.58
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.56
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.52
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.48
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.45
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.43
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.43
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.43
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.42
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.37
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.33
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.3
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.25
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.23
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.21
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.21
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.18
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.17
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.17
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.08
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.99
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.95
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.94
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.93
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.87
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.85
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.83
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.81
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.8
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.75
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.74
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.74
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.73
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.71
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.59
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.53
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.51
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.49
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.39
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.24
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.21
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.16
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.11
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.93
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.72
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.57
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.53
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.38
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.36
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.21
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.17
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.0
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.52
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.49
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.46
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.42
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.39
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.34
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.28
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.14
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.12
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.06
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.89
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.76
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.38
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.34
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.11
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.83
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.49
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.08
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.88
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.62
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	93.21
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.15
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.1
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.98
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	92.88
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.75
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.47
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.27
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.11
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.11
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.66
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.77
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.09
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.86
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.67
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.37
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.54
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.91
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.85
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.56
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.1
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	82.94
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.92
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.54
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	81.88
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.58

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.95  E-value=4.3e-27  Score=194.02  Aligned_cols=162  Identities=22%  Similarity=0.278  Sum_probs=131.4

Q ss_pred             HHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       117 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      ++++... .++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|++++...+.  +++.|+++|++++|+++++|
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc--cccccccccccccccccccc
Confidence            3444444 57799999999999999999875 56999999999999999999988876  48999999999999999999


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFS  275 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  275 (300)
                      |+|+|..+++|++|+..+++++.++|||||++++.++......... .+...+.......+...++..++.++|+++||+
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  161 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFD-VFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  161 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHH-HHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHH-HHHHHHHhhcccCcccCCCHHHHHHHHHHCCCE
Confidence            9999999999999999999999999999999999887655443332 222222223333344566778999999999999


Q ss_pred             EEEEeee
Q 022248          276 SVELGNA  282 (300)
Q Consensus       276 ~v~~~~~  282 (300)
                      +++++..
T Consensus       162 ~~~~~~~  168 (231)
T d1vl5a_         162 LEELHCF  168 (231)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=3.7e-26  Score=188.83  Aligned_cols=157  Identities=25%  Similarity=0.355  Sum_probs=131.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      +++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|++++...++  +++.|+++|++++|+++++||+|+|..+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc--ccccccccccccccccccccceeeeece
Confidence            68899999999999999999875 56999999999999999999998887  4899999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                      ++|++|+..+++++.++|||||++++.++..........+..... ......+....+..++..+++++||.+..+....
T Consensus        92 l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~  170 (234)
T d1xxla_          92 AHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN-RLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  170 (234)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH-HHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHH-hhCCCcccccCCHHHHHHHHHHCCCceeEEEEee
Confidence            999999999999999999999999999876655544444433322 2222233445677899999999999987776554


Q ss_pred             c
Q 022248          284 L  284 (300)
Q Consensus       284 ~  284 (300)
                      .
T Consensus       171 ~  171 (234)
T d1xxla_         171 L  171 (234)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.93  E-value=2.1e-25  Score=189.33  Aligned_cols=151  Identities=19%  Similarity=0.185  Sum_probs=127.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..|++..+.+|+|+|+|+.+++.|+++....++. ++++|+++|++++|+++++||+|++..+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc-ccccccccccccccccccccchhhccch
Confidence            578999999999999999998866789999999999999999999998886 6899999999999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCc---hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDG---TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ++|++++..+++++.++|||||++++.++......   ....+..       ........+.+++.++++++||+.+.+.
T Consensus       145 l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         145 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILD-------RIKLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHH-------HHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHH-------HhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            99999999999999999999999999886554321   1111211       1112234567899999999999988877


Q ss_pred             ee
Q 022248          281 NA  282 (300)
Q Consensus       281 ~~  282 (300)
                      ..
T Consensus       218 d~  219 (282)
T d2o57a1         218 SR  219 (282)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=4.9e-24  Score=174.88  Aligned_cols=188  Identities=15%  Similarity=0.206  Sum_probs=136.6

Q ss_pred             HHHHHHHhhhhHhHHHHHHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHH
Q 022248           94 EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA  170 (300)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~  170 (300)
                      +.|.+......+.|.. +.+.+..++....+++.+|||||||+|..+..+++   .++.+++|+|+|+.|++.|+++++.
T Consensus         9 ~~fdd~i~~~iP~Y~~-~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~   87 (225)
T d1im8a_           9 EVFPDMIQRSVPGYSN-IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA   87 (225)
T ss_dssp             HHHHHHHHHHSTTHHH-HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHH-HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh
Confidence            3333333333344555 44555566666667889999999999999999886   3678999999999999999999887


Q ss_pred             cCCCCCCEEEEecccCcCCCCCCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhh
Q 022248          171 AGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVV  248 (300)
Q Consensus       171 ~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  248 (300)
                      .+.. .++.+..+|+...+  .+.+|+|++..+++++  ++...++++++++|||||.+++.+............+...+
T Consensus        88 ~~~~-~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  164 (225)
T d1im8a_          88 YHSE-IPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLH  164 (225)
T ss_dssp             SCCS-SCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHH
T ss_pred             hccc-chhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHH
Confidence            6654 57888888887665  4678999999999988  47789999999999999999999877655543333322221


Q ss_pred             hhhhh---h-------------hcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          249 DPLQQ---I-------------VSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       249 ~~~~~---~-------------~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      ..+..   .             ......+.+++.++|+++||+.|++....++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~  217 (225)
T d1im8a_         165 HQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFN  217 (225)
T ss_dssp             HHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETT
T ss_pred             HHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCc
Confidence            11100   0             0012346789999999999999988655444

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2.6e-24  Score=174.40  Aligned_cols=142  Identities=22%  Similarity=0.312  Sum_probs=114.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      +..+|||||||+|.++..+.     +++|||+|+.+++.|+++         ++.++++|++++++++++||+|++..++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTI  101 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc---------cccccccccccccccccccccccccccc
Confidence            56689999999999988874     468999999999999874         6899999999999999999999999999


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeee
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNA  282 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~  282 (300)
                      +|++++..++++++++|+|||.+++.++....  .................+...++.+++.++|+++||+.+++...
T Consensus       102 ~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~  177 (208)
T d1vlma_         102 CFVDDPERALKEAYRILKKGGYLIVGIVDRES--FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  177 (208)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS--HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccccccchhhhhhcCCCCceEEEEecCCcc--hhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence            99999999999999999999999998865432  22222222221111122334678899999999999999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.3e-24  Score=178.19  Aligned_cols=152  Identities=17%  Similarity=0.200  Sum_probs=122.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..+++..+.+++|||+|+.|++.|+++....++. ++++|+.+|++++ +.+++||+|++..+
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-~~v~~~~~d~~~~-~~~~~fD~v~~~~~  109 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGY-VANEKCDVAACVGA  109 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTC-CCSSCEEEEEEESC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-ccchhhhhHHhhc-cccCceeEEEEEeh
Confidence            578999999999999999998866789999999999999999999999886 5899999999988 46789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++|++|+..++++++++|||||++++.+........... .......   .......+..++..+++++||+.+....
T Consensus       110 ~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~aG~~~v~~~~  183 (245)
T d1nkva_         110 TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE-IAQACGV---SSTSDFLTLPGLVGAFDDLGYDVVEMVL  183 (245)
T ss_dssp             GGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH-HHHTTTC---SCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred             hhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHH-HHHHhcc---CCCcccCCHHHHHHHHHHcCCEEEEEEe
Confidence            999999999999999999999999998765433221111 1111110   1111245667899999999999877653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-24  Score=174.47  Aligned_cols=146  Identities=19%  Similarity=0.152  Sum_probs=120.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|.++..++.....+|+|||+|+.|++.|++++...+.  .+++|+++|++++++++++||+|++..+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~--~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc--cccccccccccccccccccccccccccc
Confidence            35678999999999999998766666899999999999999999877664  4789999999999988999999999999


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ++|+++.  ..++++++++|||||.+++.++.......           .........++.+++.++|+++||++++.+.
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-----------LDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-----------EETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-----------cccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            9999765  47999999999999999999876543211           0111112245678999999999999999876


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      +
T Consensus       206 q  206 (222)
T d2ex4a1         206 Q  206 (222)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.2e-23  Score=175.17  Aligned_cols=161  Identities=27%  Similarity=0.443  Sum_probs=123.4

Q ss_pred             cccCCCchhhhhhhh--cccCCcccCCCCCCCCCCCChHHHHhhcCCCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Q 022248           42 SCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLF  119 (300)
Q Consensus        42 ~~~c~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (300)
                      ++.|.++|+|+..++  ++++|.    ..+.+..+++..+++..+.            .++..+.  |..........+.
T Consensus        17 ~l~C~~~h~fd~~~~Gy~~ll~~----~~~~~~~~~~~~~~~~ar~------------~~l~~g~--~~~l~~~~~~~l~   78 (268)
T d1p91a_          17 SYICPQRHQFDMAKEGYVNLLPV----QHKRSRDPGDSAEMMQARR------------AFLDAGH--YQPLRDAIVAQLR   78 (268)
T ss_dssp             EEECTTCCEEEBCTTSCEECSCS----SSSCSCCCSSSHHHHHHHH------------HHHTTTT--THHHHHHHHHHHH
T ss_pred             eEECCCCCccccccCceEecccc----cccccCCCCCCHHHHHHHH------------HHHHcCc--hHHHHHHHHHHHH
Confidence            478998888877665  777776    5555666777777766542            1222211  2221223334444


Q ss_pred             HhhcCCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEE
Q 022248          120 DNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      ..+..++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++.       +++.|.++|++++|+++++||+|
T Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~~~l~~~~~sfD~v  151 (268)
T d1p91a_          79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAI  151 (268)
T ss_dssp             HHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred             HhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccceeeehhhccCCCCCEEEE
Confidence            555567889999999999999999874 5789999999999999998763       58999999999999999999999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ++.+++++       +++++|+|||||++++..++.
T Consensus       152 ~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         152 IRIYAPCK-------AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             EEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred             eecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence            99998887       488999999999999998654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.89  E-value=1.1e-22  Score=169.52  Aligned_cols=154  Identities=17%  Similarity=0.174  Sum_probs=121.1

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.+. .+..+|||+|||+|.++..++......|++||+|+.|++.|++++...    ++++|+++|+++++++++
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  157 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSS
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccCCC
Confidence            344555555 466899999999999999988655568999999999999999876433    468999999999999899


Q ss_pred             cccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          194 SVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      +||+|++.++++|+++.  ..++++++++|||||++++.+.........          .........++.+++.++|++
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~----------~d~~d~~~~rs~~~~~~l~~~  227 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL----------VDKEDSSLTRSDIHYKRLFNE  227 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE----------EETTTTEEEBCHHHHHHHHHH
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce----------ecccCCceeCCHHHHHHHHHH
Confidence            99999999999999775  478999999999999999988655432110          000111124567899999999


Q ss_pred             cCCcEEEEeee
Q 022248          272 AGFSSVELGNA  282 (300)
Q Consensus       272 aGf~~v~~~~~  282 (300)
                      +||++++.+.+
T Consensus       228 aGf~ii~~~~q  238 (254)
T d1xtpa_         228 SGVRVVKEAFQ  238 (254)
T ss_dssp             HTCCEEEEEEC
T ss_pred             cCCEEEEEEee
Confidence            99999988754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.88  E-value=2.8e-22  Score=164.20  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=115.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++.+|||||||+|.++..+++. +.+|+|||+|+.+++.|+++..      .++.++.++++++++ +++||+|++..++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~~-~~~fD~I~~~~vl   91 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQL-PRRYDNIVLTHVL   91 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc------ccccccccccccccc-cccccccccccee
Confidence            5679999999999999998864 5689999999999999987742      479999999998876 5889999999999


Q ss_pred             cCcccHHHHHHHHH-HcccCCcEEEEEecccCCCchHHHHHHHhhhh-------hhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          205 CSVKDVDMTLQEVR-RVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP-------LQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       205 ~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      +|++|+..++.++. ++|+|||.+++..++..........+......       .....+...++.+++.++++++||++
T Consensus        92 eh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  171 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             EecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence            99999999999998 79999999999876543211111111100000       01111334567889999999999999


Q ss_pred             EEEeee
Q 022248          277 VELGNA  282 (300)
Q Consensus       277 v~~~~~  282 (300)
                      ++.+..
T Consensus       172 ~~~~~~  177 (225)
T d2p7ia1         172 TYRSGI  177 (225)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.2e-22  Score=167.47  Aligned_cols=136  Identities=24%  Similarity=0.387  Sum_probs=105.2

Q ss_pred             CCCchhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHH
Q 022248           86 PPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYA  164 (300)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a  164 (300)
                      ....++|+..|....    ..+... ..++..++.... .+..+|||||||+|.++..+++. +.+++|||+|+.|++.|
T Consensus         6 ~~~a~~Yd~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a   79 (251)
T d1wzna1           6 TLLAEYYDTIYRRRI----ERVKAE-IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVA   79 (251)
T ss_dssp             TTTGGGHHHHTHHHH----HTHHHH-HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred             HhhHHHHHHHHHhhh----hhHHHH-HHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeecccccccc
Confidence            344566666555432    333332 234455555544 56679999999999999999874 56999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc-cccCc--ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          165 QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-VLCSV--KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++++...++   ++.++++|+++++++ +.||+|+|.+ +++++  ++...+|++++++|||||++++..
T Consensus        80 ~~~~~~~~~---~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1          80 RRKAKERNL---KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             HHHHHHTTC---CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccc---cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            999988764   689999999999987 5899999964 66665  456789999999999999999854

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.3e-21  Score=165.08  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC
Q 022248          108 EAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  186 (300)
                      .+.-.+.++.+++.+. .++.+|||||||.|.++..+++..+.+++|+++|+.+++.++++++..++. .++.+...|..
T Consensus        43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~-~~v~~~~~d~~  121 (291)
T d1kpia_          43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS-SCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc-hhhhhhhhccc
Confidence            3334455666667666 688999999999999999998877889999999999999999999999986 67888887754


Q ss_pred             cCCCCCCcccEEEEcccccCccc---------HHHHHHHHHHcccCCcEEEEEecccCCCchH--------------HHH
Q 022248          187 AIPVSDASVDAVVGTLVLCSVKD---------VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTF--------------LKF  243 (300)
Q Consensus       187 ~~~~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------------~~~  243 (300)
                         +.+++||.|++..+++|+.+         ...+++++.++|||||++++...+.......              ..|
T Consensus       122 ---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~f  198 (291)
T d1kpia_         122 ---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKF  198 (291)
T ss_dssp             ---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHH
T ss_pred             ---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchH
Confidence               45689999999999999865         5789999999999999999987654332111              112


Q ss_pred             HHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccC
Q 022248          244 WQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLS  285 (300)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~  285 (300)
                      +.+++.     ..+.+.+..++...++++||+++..+....+
T Consensus       199 i~kyiF-----pgg~lps~~~~~~~~e~~gl~v~~~~~~~~h  235 (291)
T d1kpia_         199 ILTEIF-----PGGRLPRISQVDYYSSNAGWKVERYHRIGAN  235 (291)
T ss_dssp             HHHHTC-----TTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred             HHHHhc-----CCCCCCCHHHHHhhhcccccccceeeecccc
Confidence            322221     1234567789999999999999888766544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.87  E-value=1.7e-21  Score=162.34  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=121.8

Q ss_pred             HHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       118 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+. .+..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...++. ++++++.+|+.+. . .++|
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~rv~~~~~D~~~~-~-~~~~  147 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP-L-PRKA  147 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC-C-SSCE
T ss_pred             HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc-cchhhccccchhh-c-ccch
Confidence            333333 4568999999999999999987 56789999998 67899999999988875 6899999998653 2 3579


Q ss_pred             cEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          196 DAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       196 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      |+|++.+++|++++.  ..+|++++++|||||+|++.+................-..+........++.++|.++|+++|
T Consensus       148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AG  227 (253)
T d1tw3a2         148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAG  227 (253)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTT
T ss_pred             hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCC
Confidence            999999999999766  467999999999999999998654333211111111111111222344568899999999999


Q ss_pred             CcEEEEeeec
Q 022248          274 FSSVELGNAF  283 (300)
Q Consensus       274 f~~v~~~~~~  283 (300)
                      |++++++...
T Consensus       228 f~~~~v~~~~  237 (253)
T d1tw3a2         228 LVVEEVRQLP  237 (253)
T ss_dssp             EEEEEEEEEE
T ss_pred             CeEEEEEECC
Confidence            9999887653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=3e-22  Score=163.86  Aligned_cols=114  Identities=25%  Similarity=0.335  Sum_probs=99.5

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      ..++.+..++..+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++....+.   ++.++.+|++++++++++|
T Consensus        28 ~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          28 EPLLMKYMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             HHHHHHSCCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCTTSCCSCTTCE
T ss_pred             HHHHHHhcCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc---cccccccccccccccCcCc
Confidence            3445444457789999999999999999874 67999999999999999999887764   5788999999999999999


Q ss_pred             cEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          196 DAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       196 D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |+|+|..+++|++  +...+++++.++|||||++++...+
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999999999996  5678999999999999999987653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.87  E-value=7e-22  Score=167.11  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||||||+|.++..+++.  .+.+++|+|+|+.+++.|+++....+.   +++|.++|++.++++ ++||+|++.
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~---~~~f~~~d~~~~~~~-~~fD~v~~~  101 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELN-DKYDIAICH  101 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCS-SCEEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc---ccccccccccccccc-CCceEEEEe
Confidence            46789999999999999998873  357899999999999999999887664   789999999999875 579999999


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCC-------Cch-H-----HHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK-------DGT-F-----LKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      .+++|++++..+++++.++|||||.+++.++....       .+. .     ...+.+.+...............++..+
T Consensus       102 ~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  181 (281)
T d2gh1a1         102 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY  181 (281)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHH
T ss_pred             hhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999998853210       010 0     1122222222222222222233578889


Q ss_pred             HHhcCCcEEEEee
Q 022248          269 ISEAGFSSVELGN  281 (300)
Q Consensus       269 l~~aGf~~v~~~~  281 (300)
                      |+++||+.|++..
T Consensus       182 l~eaGf~~i~~~~  194 (281)
T d2gh1a1         182 LSELGVKNIECRV  194 (281)
T ss_dssp             HHHTTCEEEEEEE
T ss_pred             HHHcCCeEEEEEE
Confidence            9999999988763

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.87  E-value=4.6e-22  Score=165.13  Aligned_cols=180  Identities=11%  Similarity=0.113  Sum_probs=124.8

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ..+.+.+.....++++|||||||+|.++..+++. +.+++|+|+|+.|++.|+++....++   +++|+++|+..+++. 
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~~~~~~-   99 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNIN-   99 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCCS-
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc---cceeeccchhhhccc-
Confidence            3444445444456789999999999999999874 56999999999999999999888775   689999999988764 


Q ss_pred             CcccEEEEc-ccccCcc---cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh-h---------------hh--
Q 022248          193 ASVDAVVGT-LVLCSVK---DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV-V---------------DP--  250 (300)
Q Consensus       193 ~~~D~v~~~-~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~---------------~~--  250 (300)
                      ++||+|+|. .+++++.   +...++++++++|||||.|++...+...   ....+... +               ..  
T Consensus       100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (246)
T d1y8ca_         100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYK---LSQVLGNNDFNYDDDEVFYYWENQFEDDL  176 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH---HHTTTTTCCEEEEETTEEEEEEEEEETTE
T ss_pred             ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHH---HhhhcccCceeecCCcEEEEEeeccCCcc
Confidence            689999986 5666664   5567899999999999999974432210   00000000 0               00  


Q ss_pred             -------------hhh----hhcCCcccchHHHHHHHhcCCcEEEEeeeccCC-cccccceeeEEecC
Q 022248          251 -------------LQQ----IVSDGCHLTRQTGNNISEAGFSSVELGNAFLSN-ASLISPHVYGIAHK  300 (300)
Q Consensus       251 -------------~~~----~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~-~~~~~~~~~~~~~k  300 (300)
                                   ...    .+....++.+++.++|+++||+.+++....-.. ....++.++-+++|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk  244 (246)
T d1y8ca_         177 VSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             eeEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEe
Confidence                         000    000123467899999999999988886543332 33344556666665

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=9.7e-22  Score=162.85  Aligned_cols=114  Identities=25%  Similarity=0.385  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      ....+..++....+++.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++.        ...++.++++++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~--------~~~~~~~~~~~l~~   98 (246)
T d2avna1          28 YHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKG--------VKNVVEAKAEDLPF   98 (246)
T ss_dssp             HHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHT--------CSCEEECCTTSCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCchhcccccc-cceEEEEeeccccccccccccc--------cccccccccccccc
Confidence            44566666666667788999999999999999986 4779999999999999998863        22367899999999


Q ss_pred             CCCcccEEEEc-ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          191 SDASVDAVVGT-LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       191 ~~~~~D~v~~~-~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++++||+|++. .+++|++|+..+++++.++|||||++++..++
T Consensus        99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1          99 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            99999999985 68999999999999999999999999997753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=2.5e-21  Score=162.88  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=125.9

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  191 (300)
                      +.+..+++.+. .++.+|||||||.|.++..+++..+.+|+|||+|+.+++.|++++++.++. .++.+...|...++  
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~-~~~~~~~~d~~~~~--  115 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDFA--  115 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGCC--
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc-cchhhhhhhhhhhc--
Confidence            34556666665 678999999999999999998876789999999999999999999999885 57888888876653  


Q ss_pred             CCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCch-------HHHHHHHhhhhhhhhh--cCCcc
Q 022248          192 DASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT-------FLKFWQNVVDPLQQIV--SDGCH  260 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~  260 (300)
                       ++||.|++..+++|+.  +...+++++.++|||||++++.+........       ...........+....  ...+.
T Consensus       116 -~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP  194 (280)
T d2fk8a1         116 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP  194 (280)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             -cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence             7899999999999995  5588999999999999999997643322110       0000001111111111  22356


Q ss_pred             cchHHHHHHHhcCCcEEEEeeecc
Q 022248          261 LTRQTGNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       261 ~~~~~~~~l~~aGf~~v~~~~~~~  284 (300)
                      +..++.++++++||++++++....
T Consensus       195 S~~~l~~~~e~aGf~v~~~~~~~~  218 (280)
T d2fk8a1         195 STEMMVEHGEKAGFTVPEPLSLRP  218 (280)
T ss_dssp             CHHHHHHHHHHTTCBCCCCEECHH
T ss_pred             chHhhhhhHHhhccccceeeeccc
Confidence            778999999999999988776443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=5.7e-21  Score=160.67  Aligned_cols=164  Identities=18%  Similarity=0.196  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       111 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      -.+..+.+++++. .++.+|||||||.|.++..+++..+++|+||++|+.+++.|+++++..++. +++++..+|...++
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-~~v~~~~~d~~~~~  125 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGWEQFD  125 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCGGGCC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-hhhHHHHhhhhccc
Confidence            3345566666665 688999999999999999999877889999999999999999999988886 69999999987775


Q ss_pred             CCCCcccEEEEcccccCc--ccHHHHHHHHHHcccCCcEEEEEecccCCCch--------------HHHHHHHhhhhhhh
Q 022248          190 VSDASVDAVVGTLVLCSV--KDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGT--------------FLKFWQNVVDPLQQ  253 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  253 (300)
                         ++||.|++..+++|+  .+...+++++.++|||||++++.+.+...+..              ...++.+++.+   
T Consensus       126 ---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp---  199 (285)
T d1kpga_         126 ---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP---  199 (285)
T ss_dssp             ---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST---
T ss_pred             ---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc---
Confidence               689999999999999  45688999999999999999997765322110              11223222211   


Q ss_pred             hhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          254 IVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                        .+.+.+..++.++++++||++++++...
T Consensus       200 --gg~lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         200 --GGRLPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             --TCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             --CCCCCChhhHHHHHHHhchhhcccccch
Confidence              2345677899999999999998887654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.2e-22  Score=167.11  Aligned_cols=167  Identities=15%  Similarity=0.064  Sum_probs=118.5

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCC--------------------------
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN--------------------------  177 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~--------------------------  177 (300)
                      .++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++++........                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            467899999999999887777655558999999999999999998765432100                          


Q ss_pred             -E-EEE----ecccCcCCCCCCcccEEEEcccccCcc----cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          178 -F-KFL----QAVGEAIPVSDASVDAVVGTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       178 -~-~~~----~~d~~~~~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                       + ...    ..+....++.+++||+|++.++++|+.    +...+++++.++|||||++++.++.....          
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~----------  199 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS----------  199 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----------
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc----------
Confidence             0 011    112222357789999999999999984    56688999999999999999988654321          


Q ss_pred             hhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCC--ccc-ccceeeEEecC
Q 022248          248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSN--ASL-ISPHVYGIAHK  300 (300)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~--~~~-~~~~~~~~~~k  300 (300)
                      +...........++.++++++|++|||++++++......  ... ..+.++.+|+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arK  255 (257)
T d2a14a1         200 YMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK  255 (257)
T ss_dssp             EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred             ceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEe
Confidence            011111222345678999999999999998886554442  222 33556777766

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.85  E-value=2.9e-20  Score=154.74  Aligned_cols=164  Identities=18%  Similarity=0.216  Sum_probs=121.5

Q ss_pred             HHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcc
Q 022248          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       118 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+. .+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++++...++. +++.+..+|..+ +.+ ..|
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ri~~~~~d~~~-~~p-~~~  148 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFK-PLP-VTA  148 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCS-CCE
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc-ceeeeeeeeccc-ccc-ccc
Confidence            344333 3557899999999999999987 56789999997 78999999999988875 689999999865 333 469


Q ss_pred             cEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhh-hhhhhcCCcccchHHHHHHHhc
Q 022248          196 DAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDP-LQQIVSDGCHLTRQTGNNISEA  272 (300)
Q Consensus       196 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~a  272 (300)
                      |+|++.+++|++++.  ..+|++++++|||||++++.+................+.. +.....+..++.++|.++|+++
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A  228 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  228 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC
Confidence            999999999999765  4679999999999999999986543332222222221111 1122234456889999999999


Q ss_pred             CCcEEEEeeeccC
Q 022248          273 GFSSVELGNAFLS  285 (300)
Q Consensus       273 Gf~~v~~~~~~~~  285 (300)
                      ||++++++.....
T Consensus       229 Gf~~~~~~~~~~~  241 (256)
T d1qzza2         229 GLALASERTSGST  241 (256)
T ss_dssp             TEEEEEEEEECCS
T ss_pred             CCceeEEEEeCCc
Confidence            9999998765443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=3e-20  Score=148.95  Aligned_cols=139  Identities=20%  Similarity=0.259  Sum_probs=108.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++++|||||||+|..+..+++. +.+++|+|+|+.+++.+++..+..+++  ++.+...|+..+++ +++||+|++..++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~I~~~~~~  105 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD--NLQTDLVDLNTLTF-DGEYDFILSTVVM  105 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEECCTTTCCC-CCCEEEEEEESCG
T ss_pred             CCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc--chhhhheecccccc-cccccEEEEeeee
Confidence            4569999999999999999875 679999999999999999999988874  89999999988876 5889999999999


Q ss_pred             cCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          205 CSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       205 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      +|+++  ...+++++.++|+|||++++.........  ..          .......+...++.+.+  +||+++...+
T Consensus       106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~--~~----------~~~~~~~~~~~el~~~~--~~~~i~~~~e  170 (198)
T d2i6ga1         106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF--PC----------TVGFPFAFKEGELRRYY--EGWDMLKYNE  170 (198)
T ss_dssp             GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------------------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC--CC----------CCCCCCccCHHHHHHHh--CCCeEEEeee
Confidence            99964  45799999999999999999876543211  00          00111233445777766  6899876653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-20  Score=157.55  Aligned_cols=153  Identities=15%  Similarity=0.108  Sum_probs=113.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-------CCceEEEEcCCHHHHHHHHHHHHHcC-CCCCCEEEEecccCc------CCC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-------TDVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEA------IPV  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-------~~~~~~giD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~------~~~  190 (300)
                      +..+|||||||+|.++..++..       ....++|||+|+.|++.+++++.... +...++.+...+++.      .+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            3448999999999988877642       23578999999999999999876532 221234455555543      256


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ++++||+|++.++++|++|+..++++++++|+|||.+++..+..  ...+...+..+...........+.+.+++.++|.
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  197 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG--SSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  197 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT--TSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHH
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC--cchHHHHHHHHHHhcCCCcccccCCHHHHHHHHH
Confidence            78999999999999999999999999999999999999987543  3344444444433332223345667789999999


Q ss_pred             hcCCcEEEE
Q 022248          271 EAGFSSVEL  279 (300)
Q Consensus       271 ~aGf~~v~~  279 (300)
                      +.||+.+..
T Consensus       198 ~~G~~~~~~  206 (280)
T d1jqea_         198 NLGLKYECY  206 (280)
T ss_dssp             HHTCCEEEE
T ss_pred             HCCCceEEE
Confidence            999985544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=156.34  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=121.3

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCC----------------
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----------------  176 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~----------------  176 (300)
                      +.+.+.+..-..++.+|||||||+|.+....+.....+|+|+|+|+.|++.++++++......+                
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  121 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE  121 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccc
Confidence            3444444444457889999999999887655554556899999999999999987754331110                


Q ss_pred             ------------CEEEEecccCc------CCCCCCcccEEEEcccccCcc----cHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          177 ------------NFKFLQAVGEA------IPVSDASVDAVVGTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       177 ------------~~~~~~~d~~~------~~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                                  .......|+..      .+...++||+|++.++++++.    ++..+++++.++|||||+|++.+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         122 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             hhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence                        11233444432      234567899999999999984    56788999999999999999988644


Q ss_pred             CCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeeccCC----cc-cccceeeEEecC
Q 022248          235 AKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAFLSN----AS-LISPHVYGIAHK  300 (300)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~----~~-~~~~~~~~~~~k  300 (300)
                      ...          ............++.++++++|+++||++++++......    .+ -....++.+|+|
T Consensus       202 ~~~----------~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK  262 (263)
T d2g72a1         202 ESW----------YLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK  262 (263)
T ss_dssp             CCE----------EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred             Ccc----------cccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence            321          001111112345688999999999999998877544321    11 123556778877

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.81  E-value=9.4e-20  Score=151.56  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=97.1

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCccc
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVD  196 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D  196 (300)
                      +++....++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....+.. .++.|.++|+...++ .+++||
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~~~fD   95 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMDLGKEFD   95 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCCCSSCEE
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC-cceEEEEcchhhhcccccccce
Confidence            455566788999999999999999988765668999999999999999998877654 589999999977765 467899


Q ss_pred             EEEEcccccCcc----cHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+|.+++||+.    +...+++++.++|||||++++..+
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            999999999983    345789999999999999998764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-20  Score=153.27  Aligned_cols=150  Identities=15%  Similarity=0.176  Sum_probs=107.7

Q ss_pred             HHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--CCCCCc
Q 022248          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDAS  194 (300)
Q Consensus       117 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  194 (300)
                      .+.+.+..++.+|||||||+|.++..+++....+++|||+|+.+++.|+++.+..+   .++.++..++...  ++++++
T Consensus        45 ~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  121 (229)
T d1zx0a1          45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGH  121 (229)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTC
T ss_pred             HHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc---ccccccccccccccccccccc
Confidence            33444445788999999999999999987666789999999999999999987654   3677777776543  567889


Q ss_pred             ccEEE-----EcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHH
Q 022248          195 VDAVV-----GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNI  269 (300)
Q Consensus       195 ~D~v~-----~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (300)
                      ||.|+     +...++|+.+...++++++|+|||||+|++.+....     .......+....      ....+.+...|
T Consensus       122 fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~l  190 (229)
T d1zx0a1         122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-----GELMKSKYSDIT------IMFEETQVPAL  190 (229)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-----HHHTTTTCSCHH------HHHHHHTHHHH
T ss_pred             ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCc-----chhhhhhhhhcc------hhhhhHHHHHH
Confidence            99988     466777888999999999999999999988542211     000000000001      01124666788


Q ss_pred             HhcCCcEEEEe
Q 022248          270 SEAGFSSVELG  280 (300)
Q Consensus       270 ~~aGf~~v~~~  280 (300)
                      .++||+.++++
T Consensus       191 ~~agF~~~~i~  201 (229)
T d1zx0a1         191 LEAGFRRENIR  201 (229)
T ss_dssp             HHTTCCGGGEE
T ss_pred             HHCCCeeEEEE
Confidence            89999865554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.3e-18  Score=143.63  Aligned_cols=136  Identities=22%  Similarity=0.235  Sum_probs=106.9

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ...+++.....++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.|+++++.+++   ++.++.+|+... ++.+
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~---~~~~~~~d~~~~-~~~~  183 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGV---RPRFLEGSLEAA-LPFG  183 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTC---CCEEEESCHHHH-GGGC
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCC---ceeEEecccccc-cccc
Confidence            33444455556889999999999999998876 567999999999999999999999887   467888887653 4567


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcC
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAG  273 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  273 (300)
                      +||+|+++...+   ....++.++.++|||||++++++....                         ..+++.+.++++|
T Consensus       184 ~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~~-------------------------~~~~v~~~~~~~G  235 (254)
T d2nxca1         184 PFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILKD-------------------------RAPLVREAMAGAG  235 (254)
T ss_dssp             CEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------GHHHHHHHHHHTT
T ss_pred             ccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEecchh-------------------------hHHHHHHHHHHCC
Confidence            999999874433   346678999999999999999764211                         1247888999999


Q ss_pred             CcEEEEeee
Q 022248          274 FSSVELGNA  282 (300)
Q Consensus       274 f~~v~~~~~  282 (300)
                      |+.++....
T Consensus       236 f~~~~~~~~  244 (254)
T d2nxca1         236 FRPLEEAAE  244 (254)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            998877654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.77  E-value=5.9e-19  Score=140.79  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=93.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++++..++...+++++.+|..+ +++++.||+|++...
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p  128 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP  128 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred             CCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc
Confidence            46889999999999999999864 5699999999999999999999988876689999999876 567889999999888


Q ss_pred             ccCcccH-HHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDV-DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~-~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +++..+. +.+++++.++|||||.++++..
T Consensus       129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         129 IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            8776654 6789999999999999988653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=140.29  Aligned_cols=145  Identities=12%  Similarity=-0.019  Sum_probs=109.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcC---------------CCCCCEEEEecccCcC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------------LPLTNFKFLQAVGEAI  188 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~---------------~~~~~~~~~~~d~~~~  188 (300)
                      .++.+|||+|||+|..+..|++ .+.+|+|||+|+.+++.|+++.....               ....+++++++|+..+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4678999999999999999997 47799999999999999988764321               0124789999999887


Q ss_pred             C-CCCCcccEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHH
Q 022248          189 P-VSDASVDAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQT  265 (300)
Q Consensus       189 ~-~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (300)
                      + ...+.||+|+...++++++  +...+++++.++|||||++++..........            .  ......+.+++
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~------------~--gpp~~~~~~el  188 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH------------P--GPPFYVPHAEI  188 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC------------C--CSSCCCCHHHH
T ss_pred             cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC------------C--CCCCCCCHHHH
Confidence            4 5678999999999999884  5678999999999999999888765432110            0  00123466788


Q ss_pred             HHHHHhcCCcEEEEeeecc
Q 022248          266 GNNISEAGFSSVELGNAFL  284 (300)
Q Consensus       266 ~~~l~~aGf~~v~~~~~~~  284 (300)
                      .+++. .+|++..++....
T Consensus       189 ~~lf~-~~~~i~~le~~~~  206 (229)
T d2bzga1         189 ERLFG-KICNIRCLEKVDA  206 (229)
T ss_dssp             HHHHT-TTEEEEEEEEEEC
T ss_pred             HHHhc-CCCEEEEEEEecc
Confidence            88885 4787665554433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=1.6e-18  Score=141.30  Aligned_cols=139  Identities=13%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++. ++..|+|+|+|+.|++.+++++...    +++.++.+|.... ++.+..+|++++.
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~----~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh----cccceEEEeeccCcccccccceeEEee
Confidence            67899999999999999999983 5679999999999999998876544    4778888887664 3566778888888


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                      ..+++..+...++.++.+.|||||.++++......+.....         .       ...+++.+.|+++||++++...
T Consensus       149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~---------~-------~~~~e~~~~L~~aGF~ive~id  212 (230)
T d1g8sa_         149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP---------K-------EIFKEQKEILEAGGFKIVDEVD  212 (230)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH---------H-------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH---------H-------HHHHHHHHHHHHcCCEEEEEec
Confidence            88888888999999999999999999998765443321000         0       0124778899999999988764


Q ss_pred             e
Q 022248          282 A  282 (300)
Q Consensus       282 ~  282 (300)
                      .
T Consensus       213 L  213 (230)
T d1g8sa_         213 I  213 (230)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=6.4e-18  Score=133.75  Aligned_cols=104  Identities=20%  Similarity=0.231  Sum_probs=92.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++++..++. ++++++++|+.+.....+.||+|++...
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~-~~v~~~~gda~~~~~~~~~~D~v~~~~~  109 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             CCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCC-cceEEEECchhhcccccCCcCEEEEeCc
Confidence            57899999999999999999864 569999999999999999999999985 6999999999888777789999999876


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .++   ...+++++.+.|||||++++...
T Consensus       110 ~~~---~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         110 GGE---LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccc---chHHHHHHHHHhCcCCEEEEEee
Confidence            554   46679999999999999988663

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.74  E-value=2.5e-18  Score=137.31  Aligned_cols=144  Identities=8%  Similarity=-0.020  Sum_probs=106.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----------CCCEEEEecccCcCC-CCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----------LTNFKFLQAVGEAIP-VSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~-~~~  192 (300)
                      .++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++.+..+..          ...+.|+.+|+..++ ...
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            57889999999999999999975 779999999999999999988543220          135678888888775 344


Q ss_pred             CcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          193 ASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ..||+|++..+++++.+  ....++++.++|||||.+++...........              ......+.+++++++ 
T Consensus        98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~--------------~p~~~~~~~el~~l~-  162 (201)
T d1pjza_          98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE--------------GPPFSVPQTWLHRVM-  162 (201)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS--------------SCCCCCCHHHHHHTS-
T ss_pred             cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC--------------CccccCCHHHHHHHh-
Confidence            68999999999999864  5688999999999999998877544332110              001122345666655 


Q ss_pred             hcCCcEEEEeeec
Q 022248          271 EAGFSSVELGNAF  283 (300)
Q Consensus       271 ~aGf~~v~~~~~~  283 (300)
                      ..+|++..++...
T Consensus       163 ~~~~~i~~~~~~~  175 (201)
T d1pjza_         163 SGNWEVTKVGGQD  175 (201)
T ss_dssp             CSSEEEEEEEESS
T ss_pred             CCCcEEEEEEEec
Confidence            4677765555443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=1.2e-16  Score=127.46  Aligned_cols=105  Identities=18%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~  201 (300)
                      ....|||||||+|.++..+++ .++..++|+|+++.++..|.++++..++.  |+.++.+|+..+.  ++++++|.|++.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~--Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc--CchhcccchhhhhcccCchhhhccccc
Confidence            456899999999999999987 68899999999999999999999999984  9999999998764  788999999998


Q ss_pred             ccccCcccH--------HHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +...+....        ..++++++|+|||||.|++.+
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            877765432        478999999999999999975

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.70  E-value=7.3e-17  Score=129.51  Aligned_cols=106  Identities=13%  Similarity=0.047  Sum_probs=86.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEE-c
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG-T  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-~  201 (300)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.|+++++..    +++.++.+|+...+.....+|.+.+ .
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~----~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc----CCceEEEeeccCccccccccceEEEEE
Confidence            67899999999999999999873 4569999999999999999998775    3899999999887655555544432 3


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..+.+..+...++.++.++|||||++++....
T Consensus       131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         131 QDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            34566677888999999999999999998753

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=7.1e-17  Score=130.16  Aligned_cols=108  Identities=24%  Similarity=0.217  Sum_probs=91.6

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      ..+++.+. .++.+|||||||+|+++..+++.  ....|+++|+++.+++.|+++++..++.  ++.++.+|.......+
T Consensus        65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~--n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGG
T ss_pred             HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc--ccccccCchHHccccc
Confidence            33444443 68899999999999999998863  5679999999999999999999988874  8999999998877777


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++||+|++..++++++      +++.+.|||||+|++..
T Consensus       143 ~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred             cchhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence            8999999999999886      45778899999998844

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.70  E-value=1.8e-16  Score=130.08  Aligned_cols=147  Identities=18%  Similarity=0.177  Sum_probs=107.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ....+|||||||+|.++..+++ .+..+++..|+ +..++.       ... .++++++.+|+.+ +.+  ..|++++..
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~  147 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------APP-LSGIEHVGGDMFA-SVP--QGDAMILKA  147 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCC-CTTEEEEECCTTT-CCC--CEEEEEEES
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cCC-CCCeEEecCCccc-ccc--cceEEEEeh
Confidence            3458999999999999999987 68889999998 444332       222 3689999999864 333  459999999


Q ss_pred             cccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhh-hhhhhhcCCcccchHHHHHHHhcCCcEE
Q 022248          203 VLCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVD-PLQQIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       203 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      ++|++++.  ..+|+++++.|+|||++++.+......+  .........+. .+.....+..++.++|.++|++|||+.+
T Consensus       148 vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v  227 (244)
T d1fp1d2         148 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF  227 (244)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred             hhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCce
Confidence            99999765  4789999999999999999997643321  11111111111 1122234456788999999999999999


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      ++...
T Consensus       228 ~v~~~  232 (244)
T d1fp1d2         228 QVACR  232 (244)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88644

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=7.6e-17  Score=132.27  Aligned_cols=126  Identities=20%  Similarity=0.206  Sum_probs=102.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++  .+..+++++|.++.+++.|+++++..+.. .++++..+|+.+. ++++.||.|++ 
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~nv~~~~~Di~~~-~~~~~fD~V~l-  160 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF-ISDQMYDAVIA-  160 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC-CCSCCEEEEEE-
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-CceEEEEeeeecc-cccceeeeeee-
Confidence            6889999999999999999987  36679999999999999999999876543 6999999998775 45789999986 


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                          +++++..++.++.++|||||++++..++..      + +                  ..+.+.|++.||..+++.+
T Consensus       161 ----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~------Q-v------------------~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         161 ----DIPDPWNHVQKIASMMKPGSVATFYLPNFD------Q-S------------------EKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             ----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH------H-H------------------HHHHHHSGGGTEEEEEEEE
T ss_pred             ----cCCchHHHHHHHHHhcCCCceEEEEeCCcC------h-H------------------HHHHHHHHHCCCceeEEEE
Confidence                357777889999999999999998764320      0 0                  1455667889998766543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.3e-16  Score=131.67  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=92.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEEEecccCcCCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  200 (300)
                      .++.+|||+|||+|.++..|++  .+..+++++|+++++++.|+++++.. +...+++.+..+|+.+.+++++.||.|++
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE
Confidence            6899999999999999999987  46779999999999999999998764 22246999999999998999999999986


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                           +++++..++.++.++|||||++++..++
T Consensus       175 -----dlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         175 -----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             -----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             -----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence                 5688889999999999999999987743

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.7e-17  Score=137.93  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=81.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCC--CCEEEEecccCcCC---CCCCcccEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL--TNFKFLQAVGEAIP---VSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~d~~~~~---~~~~~~D~v~  199 (300)
                      ++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.|+++....+...  .+..+..+++..++   ...+.||+|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            5679999999999999999975 6799999999999999999887665421  12334444443221   1346899999


Q ss_pred             Ec-ccccCccc-------HHHHHHHHHHcccCCcEEEEEec
Q 022248          200 GT-LVLCSVKD-------VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       200 ~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |. .+++|+++       ...+|++++++|||||+|++...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            85 47888753       56799999999999999998553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=4.9e-16  Score=128.95  Aligned_cols=126  Identities=19%  Similarity=0.247  Sum_probs=103.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|+++++..++. .++.+...|+.. .+....||.|+. 
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-~~v~~~~~d~~~-~~~~~~~D~V~~-  178 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISE-GFDEKDVDALFL-  178 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGG-CCSCCSEEEEEE-
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-cCcEEEeccccc-cccccceeeeEe-
Confidence            68999999999999999999873  5679999999999999999999998874 688888888643 345678998875 


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEee
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGN  281 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  281 (300)
                          +++++..+++++.++|||||++++..++..                 +        .+...+.|++.||..+++.+
T Consensus       179 ----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~-----------------Q--------v~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         179 ----DVPDPWNYIDKCWEALKGGGRFATVCPTTN-----------------Q--------VQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             ----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH-----------------H--------HHHHHHHHHHSSEEEEEEEC
T ss_pred             ----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc-----------------H--------HHHHHHHHHHCCceeEEEEE
Confidence                568888999999999999999999774321                 0        12566778899998877664

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.65  E-value=1.5e-15  Score=121.15  Aligned_cols=105  Identities=23%  Similarity=0.360  Sum_probs=90.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--CCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~  201 (300)
                      ....|||||||+|.++..+++ .++..++|+|+++.++..|.+++...++.  |+.++.+|+..+.  ++++++|.|++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~--Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc--cceeeecCHHHHhhhccCCceehhccc
Confidence            456899999999999999987 57889999999999999999999999874  9999999998874  788999999987


Q ss_pred             ccccCcccH--------HHHHHHHHHcccCCcEEEEEe
Q 022248          202 LVLCSVKDV--------DMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +...+....        ..+++.+.++|||||.|++.+
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            755444321        578999999999999999866

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.2e-16  Score=125.82  Aligned_cols=102  Identities=20%  Similarity=0.240  Sum_probs=88.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCC---CCCEEEEecccCcCCCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~v  198 (300)
                      .++.+|||||||+|+++..+++  .+..+|+++|+++.+++.|+++++..++.   ..++.++.+|......+++.||+|
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            5789999999999999988876  35679999999999999999998876532   358899999998887778899999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++..++++++      .++.+.|||||+|++..
T Consensus       155 ~~~~~~~~ip------~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         155 HVGAAAPVVP------QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             hhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence            9999999876      46789999999999954

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.63  E-value=4.3e-15  Score=121.84  Aligned_cols=146  Identities=15%  Similarity=0.180  Sum_probs=107.4

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ...+|||||||+|.++..+++ .+..++++.|. +..++.+       +. .++++++.+|+.+. .  ..+|++++.++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~-~~rv~~~~gD~f~~-~--p~aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SG-SNNLTYVGGDMFTS-I--PNADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC-BTTEEEEECCTTTC-C--CCCSEEEEESC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cc-cCceEEEecCcccC-C--CCCcEEEEEee
Confidence            457899999999999999987 57889999998 4444433       22 26999999998763 2  35799999999


Q ss_pred             ccCcccHH--HHHHHHHHcccCC---cEEEEEecccCCCc--hHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcE
Q 022248          204 LCSVKDVD--MTLQEVRRVLKPG---GIYLFVEHVAAKDG--TFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSS  276 (300)
Q Consensus       204 l~~~~~~~--~~l~~~~~~Lkpg---G~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  276 (300)
                      +|+++|.+  .+|+++++.|+||   |++++.+.......  .........+........+..++.++|+++|++|||+.
T Consensus       148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~  227 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQH  227 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCE
T ss_pred             cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCce
Confidence            99998764  7899999999998   88999886554332  11111111111111123445678899999999999999


Q ss_pred             EEEeee
Q 022248          277 VELGNA  282 (300)
Q Consensus       277 v~~~~~  282 (300)
                      +++...
T Consensus       228 ~~i~~~  233 (244)
T d1fp2a2         228 YKISPL  233 (244)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            988654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=6e-15  Score=119.35  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC---CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v  198 (300)
                      .++.+|||+|||+|.++..+++.  +...|+|+|+++.+++.++++++..    .++..+..|+...   +.....+|+|
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~----~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc----CCceEEEEECCCcccccccccceEEE
Confidence            68899999999999999999983  5679999999999999999887654    3677777777543   3445678888


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEE
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVE  278 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  278 (300)
                      ++.  +.+..+...++.++.+.|||||+++++......+.....         ...       ..++.+ +.+.||+.++
T Consensus       148 ~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~---------~~v-------~~~v~~-l~~~gf~iie  208 (227)
T d1g8aa_         148 FED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP---------EQV-------FREVER-ELSEYFEVIE  208 (227)
T ss_dssp             EEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH---------HHH-------HHHHHH-HHHTTSEEEE
T ss_pred             EEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH---------HHH-------HHHHHH-HHHcCCEEEE
Confidence            763  445567788999999999999999998654432211000         000       013334 4467999887


Q ss_pred             EeeeccCCcccccceeeEEecC
Q 022248          279 LGNAFLSNASLISPHVYGIAHK  300 (300)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~k  300 (300)
                      .......    -..|+..+++|
T Consensus       209 ~i~L~p~----~~~H~~vv~rK  226 (227)
T d1g8aa_         209 RLNLEPY----EKDHALFVVRK  226 (227)
T ss_dssp             EEECTTT----SSSEEEEEEEC
T ss_pred             EEcCCCC----CCceEEEEEEe
Confidence            6543221    23567777776

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=4.6e-15  Score=127.44  Aligned_cols=102  Identities=24%  Similarity=0.323  Sum_probs=88.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++++|||||||+|.++..+++....+|+++|.++ +++.|++..+..++. .++.++.+++.++++++++||+|++....
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~-~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc-ccceEEEeehhhccCcccceeEEEEEecc
Confidence            7889999999999999988876667999999986 778899998888875 68999999999999999999999996665


Q ss_pred             cCc---ccHHHHHHHHHHcccCCcEEE
Q 022248          205 CSV---KDVDMTLQEVRRVLKPGGIYL  228 (300)
Q Consensus       205 ~~~---~~~~~~l~~~~~~LkpgG~l~  228 (300)
                      +++   .....++..+.++|||||.++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            544   456788999999999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=130.40  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHH-------cCCCCCCEEEEec
Q 022248          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA-------AGLPLTNFKFLQA  183 (300)
Q Consensus       113 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~  183 (300)
                      ....++++.+. .++.+|||||||+|.++..++.. +..+++|||+++.+++.|++..++       .+....++.|+++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            44566676665 67899999999999999988864 445799999999999999876554       3444568999999


Q ss_pred             ccCcCCCCCCcc--cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          184 VGEAIPVSDASV--DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       184 d~~~~~~~~~~~--D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+.++++.+..+  |+|++ +.+.+.++....+.++.+.|||||++++...
T Consensus       218 d~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            999988766555  55665 4455678889999999999999999988653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=7.7e-15  Score=125.34  Aligned_cols=103  Identities=21%  Similarity=0.310  Sum_probs=88.1

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      ++++|||||||+|.++..+++....+|+++|.++. ...+++.++..++. +++.++.+++.+++++.++||+|++....
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~-~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc-cccceEeccHHHcccccceeEEEeeeeee
Confidence            78899999999999999888765568999999975 57777778888875 68999999999999988999999987666


Q ss_pred             cCc---ccHHHHHHHHHHcccCCcEEEE
Q 022248          205 CSV---KDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       205 ~~~---~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      +.+   .....++..+.++|||||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            655   3568899999999999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2e-14  Score=119.14  Aligned_cols=141  Identities=20%  Similarity=0.281  Sum_probs=107.1

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      +....+......+.+|||+|||+|..+..++. .+..+++++|+|+.+++.|+++++..++.  +++|+.+|+.. ++++
T Consensus        97 lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~--~v~~~~~d~~~-~~~~  173 (274)
T d2b3ta1          97 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK--NIHILQSDWFS-ALAG  173 (274)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCSTTG-GGTT
T ss_pred             hhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc--cceeeeccccc-ccCC
Confidence            34445555556678999999999999999876 57889999999999999999999999874  79999999865 3456


Q ss_pred             CcccEEEEcc--c-----------ccCcc------------cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHh
Q 022248          193 ASVDAVVGTL--V-----------LCSVK------------DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNV  247 (300)
Q Consensus       193 ~~~D~v~~~~--~-----------l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  247 (300)
                      ++||+|+++=  +           +.+-+            ....++++..++|+|||.+++.-  ....          
T Consensus       174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi--g~~q----------  241 (274)
T d2b3ta1         174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH--GWQQ----------  241 (274)
T ss_dssp             CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC--CSSC----------
T ss_pred             CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE--CchH----------
Confidence            7999999961  1           11111            12467899999999999999843  1111          


Q ss_pred             hhhhhhhhcCCcccchHHHHHHHhcCCcEEEEeeec
Q 022248          248 VDPLQQIVSDGCHLTRQTGNNISEAGFSSVELGNAF  283 (300)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~  283 (300)
                                    .+.+.+++++.||..+++....
T Consensus       242 --------------~~~v~~~l~~~gf~~i~~~kDl  263 (274)
T d2b3ta1         242 --------------GEAVRQAFILAGYHDVETCRDY  263 (274)
T ss_dssp             --------------HHHHHHHHHHTTCTTCCEEECT
T ss_pred             --------------HHHHHHHHHHCCCCeEEEEECC
Confidence                          1367788999999977766443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.58  E-value=1.4e-14  Score=118.94  Aligned_cols=146  Identities=13%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ...+|||||||+|.++..+++ .++.++++.|+.+. ++.++       . .+++.+..+|+.+ +.+  ..|++++..+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~-------~-~~r~~~~~~d~~~-~~P--~ad~~~l~~v  148 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP-------S-YPGVEHVGGDMFV-SIP--KADAVFMKWI  148 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC-------C-CTTEEEEECCTTT-CCC--CCSCEECSSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc-------c-CCceEEecccccc-cCC--CcceEEEEEE
Confidence            357899999999999999987 67889999998553 32221       1 3689999999855 333  3577888999


Q ss_pred             ccCcccH--HHHHHHHHHcccCCcEEEEEecccCCCc--hHHHHHHHhhhhhh--hhhcCCcccchHHHHHHHhcCCcEE
Q 022248          204 LCSVKDV--DMTLQEVRRVLKPGGIYLFVEHVAAKDG--TFLKFWQNVVDPLQ--QIVSDGCHLTRQTGNNISEAGFSSV  277 (300)
Q Consensus       204 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~v  277 (300)
                      +|.+++.  ..+|+++++.|+|||++++.+.......  .........+....  ....+..++.++|+++|++|||+.+
T Consensus       149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~v  228 (243)
T d1kyza2         149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGF  228 (243)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCE
T ss_pred             eecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcE
Confidence            9988654  5789999999999999999986543221  11111111111111  1113345778999999999999999


Q ss_pred             EEeee
Q 022248          278 ELGNA  282 (300)
Q Consensus       278 ~~~~~  282 (300)
                      ++...
T Consensus       229 kv~~~  233 (243)
T d1kyza2         229 KVHCN  233 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.7e-14  Score=121.67  Aligned_cols=104  Identities=23%  Similarity=0.241  Sum_probs=86.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++++|||||||+|.++..+++....+|+++|.++.+. .+++.....+.. +++.++.+++++++++.++||+|++...
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~-~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCC-ccceEEEeeHHHhcCccccceEEEEeee
Confidence            47889999999999999998876556899999999875 466666667665 6899999999999988899999999766


Q ss_pred             ccCcc---cHHHHHHHHHHcccCCcEEEE
Q 022248          204 LCSVK---DVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       204 l~~~~---~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      .++..   ....++....++|||||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCCCcEEec
Confidence            66553   345677888899999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=1.2e-14  Score=117.21  Aligned_cols=97  Identities=29%  Similarity=0.257  Sum_probs=82.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|+++..|++. ..+|+++|+++.+++.|+++....    .++.++.+|......+.++||.|++..+
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~~pfD~Iiv~~a  143 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEEKPYDRVVVWAT  143 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             cccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhhhhHHHHHhhcc
Confidence            67899999999999999888764 569999999999999999876532    5899999998765445688999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +.+++      ..+.+.|||||+|++..
T Consensus       144 ~~~ip------~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         144 APTLL------CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             BSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             hhhhh------HHHHHhcCCCCEEEEEE
Confidence            88876      45778899999999853

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=1.4e-14  Score=115.95  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=88.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||||||+|+.+..++...+.+|+++|.++.+++.|+++++..++  .++.++.+|........+.||.|++..+
T Consensus        77 ~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~--~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          77 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV--KNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC--ceeEEEECccccCCcccCcceeEEeecc
Confidence            57889999999999999888875566899999999999999999999887  4999999999876556789999999999


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +..++      ..+.+.|+|||++++..
T Consensus       155 ~~~ip------~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         155 APKIP------EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             BSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             cccCC------HHHHHhcCCCCEEEEEE
Confidence            99887      44778899999999854

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-14  Score=120.91  Aligned_cols=105  Identities=18%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcC---------CCCCCEEEEecccCcCC--C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAIP--V  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~d~~~~~--~  190 (300)
                      .++.+|||+|||+|.++..|++  .+..+|+++|+++.+++.|+++++..+         -..+++.+..+|+....  +
T Consensus        97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~  176 (324)
T d2b25a1          97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  176 (324)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence            5899999999999999999987  466799999999999999999987532         11368999999987653  4


Q ss_pred             CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          191 SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ++..||.|++     .++++..++.++.++|||||+|++..++
T Consensus       177 ~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         177 KSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             ----EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             CCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence            5678999986     4567777899999999999999997743

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=3.2e-13  Score=111.41  Aligned_cols=131  Identities=13%  Similarity=0.092  Sum_probs=101.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      .++.+|||+|||+|.++..+++....+|+++|+++.+++.++++++.+++. ++++++.+|+.+++. .+.||.|++..-
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~-~~v~~~~~D~~~~~~-~~~~D~Ii~~~p  183 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV  183 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC-ceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence            578999999999999999998866679999999999999999999999986 679999999988764 478999997532


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVEL  279 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  279 (300)
                          +....++.++.+.|++||++.+.+.......                   .....+.+.++....||++..+
T Consensus       184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-------------------~~~~~e~~~~~~~~~g~~v~~~  236 (260)
T d2frna1         184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-------------------PREPFETFKRITKEYGYDVEKL  236 (260)
T ss_dssp             ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-------------------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred             ----CchHHHHHHHHhhcCCCCEEEEEeccccccc-------------------hhhHHHHHHHHHHHcCCceEEE
Confidence                2234467888899999999987664332210                   0111235667788899986433

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=7.9e-14  Score=112.42  Aligned_cols=102  Identities=13%  Similarity=0.199  Sum_probs=83.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-------CCceEEEEcCCHHHHHHHHHHHHHcCC---CCCCEEEEecccCcCCCCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-------TDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~~giD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~  193 (300)
                      .++.+|||||||+|+++..+++.       ...+|+++|+++.+++.|++++....+   ...++.++.+|......+.+
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~  158 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  158 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence            57899999999999999888752       235899999999999999987654321   12489999999987766678


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .||.|++..++..++      ..+.+.|||||++++..
T Consensus       159 ~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         159 PYNAIHVGAAAPDTP------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             SEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             ceeeEEEEeechhch------HHHHHhcCCCcEEEEEE
Confidence            999999999998887      45788999999998854

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.43  E-value=1.1e-12  Score=111.12  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=104.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  200 (300)
                      ++.+|||++||+|.++.+++.....+|+++|+++.+++.++++++.+++...+++|+++|+.+.    .-..+.||+|++
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            6889999999999999988765556899999999999999999999998767899999998542    234578999998


Q ss_pred             cc--------cc-cCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHh
Q 022248          201 TL--------VL-CSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISE  271 (300)
Q Consensus       201 ~~--------~l-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (300)
                      .-        .+ ....+...++..+.++|+|||.|+++.........  .+.                  ..+.+.+..
T Consensus       224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~--~f~------------------~~v~~a~~~  283 (317)
T d2b78a2         224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVS--QFK------------------KQIEKGFGK  283 (317)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH--HHH------------------HHHHHHHTT
T ss_pred             cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHH--HHH------------------HHHHHHHHH
Confidence            41        11 11134567899999999999999998864433211  111                  144566677


Q ss_pred             cCCcEEEEeeeccCC
Q 022248          272 AGFSSVELGNAFLSN  286 (300)
Q Consensus       272 aGf~~v~~~~~~~~~  286 (300)
                      +|.+.+.+......+
T Consensus       284 ~~~~~~~~~~~~~Df  298 (317)
T d2b78a2         284 QKHTYLDLQQLPSDF  298 (317)
T ss_dssp             CCCEEEEEECCCTTS
T ss_pred             cCCeEEEeccCCCCC
Confidence            888877665443333

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=5.1e-14  Score=122.64  Aligned_cols=123  Identities=12%  Similarity=0.152  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcC-------CCCCCEE
Q 022248          109 AEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG-------LPLTNFK  179 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~-------~~~~~~~  179 (300)
                      +.....+.++++.+. .++.+|||||||+|.++..++.. +..+++|||+++.+++.|+++.+..+       .....+.
T Consensus       199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            334456777777775 67899999999999999999875 34589999999999999999876532       2222333


Q ss_pred             E-EecccCcCCC---CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          180 F-LQAVGEAIPV---SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       180 ~-~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      + ..++....+.   .-..+|+|++.. ..+.++....+.++.+.|||||+++..+.
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             eeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            3 3344433221   113567888754 45668889999999999999999988653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=4.1e-13  Score=114.19  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  200 (300)
                      ++.+|||++||+|.++.+++. .+.+|+++|+|+.+++.|+++++.+++.  +++++++|+.+.    +...++||+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~--~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC--CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            678999999999999999875 5669999999999999999999999984  899999998653    345678999998


Q ss_pred             ccccc---------CcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          201 TLVLC---------SVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .--..         ...+...++..+.++|||||.|++.....
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            43111         11234567899999999999999987544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=5.4e-13  Score=113.84  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             HHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc----CCCCCC
Q 022248          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDA  193 (300)
Q Consensus       118 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~  193 (300)
                      ++..+..++.+|||+|||+|.++..++.....+|+++|+++.+++.++++++.+++. ++++++++|+.+    ++...+
T Consensus       138 ~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-~~~~~~~~d~~~~~~~~~~~~~  216 (324)
T d2as0a2         138 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIVGSAFEEMEKLQKKGE  216 (324)
T ss_dssp             HHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHTTC
T ss_pred             HHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-ccceeeechhhhhhHHHHhccC
Confidence            334444578999999999999999988765568999999999999999999999985 589999999865    234567


Q ss_pred             cccEEEEcccccC---------cccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          194 SVDAVVGTLVLCS---------VKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       194 ~~D~v~~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +||+|++.--...         ..+...++..+.++|+|||.|+++.....
T Consensus       217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            9999998432111         11345678889999999999999885543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=8.5e-13  Score=100.17  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=82.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~  203 (300)
                      .+.+|||+|||+|.++..++.+...+++++|.++.+++.++++++..++. .+++++++|+... ....++||+|++.- 
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-~~~~ii~~D~~~~l~~~~~~fDiIf~DP-   91 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDP-   91 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-cchhhhcccccccccccccccceeEech-
Confidence            68899999999999999887765669999999999999999999988875 6799999998763 44568899999842 


Q ss_pred             ccCcccHHHHHHHHH--HcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVR--RVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~--~~LkpgG~l~~~~  231 (300)
                      .+........+..+.  ++|+|||.+++..
T Consensus        92 Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          92 PYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             SSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            222223344555553  5799999998854

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=9.8e-13  Score=103.28  Aligned_cols=119  Identities=13%  Similarity=0.280  Sum_probs=94.5

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---  189 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---  189 (300)
                      +.++++.+. .++..+||++||+|..+..+++ .++.+++|+|.++.+++.|+++++..+   .++.++.+++.++.   
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHHHH
Confidence            334444444 5678999999999999999987 467899999999999999999987654   47999999987642   


Q ss_pred             --CCCCcccEEEEccccc---------CcccHHHHHHHHHHcccCCcEEEEEecccCC
Q 022248          190 --VSDASVDAVVGTLVLC---------SVKDVDMTLQEVRRVLKPGGIYLFVEHVAAK  236 (300)
Q Consensus       190 --~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  236 (300)
                        +..+.||.|+....+.         .+......+..+.++|+|||.++++.+...+
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~E  146 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLE  146 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHH
Confidence              4467999999866552         2334567899999999999999999876544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=6.5e-12  Score=100.52  Aligned_cols=116  Identities=19%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-
Q 022248          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-  188 (300)
                      ..++..++...  ++.+|||+|||+|..+..+++.  .+.+++++|.++.+.+.|++.++..++. ++++++.+|..+. 
T Consensus        45 G~lL~~lv~~~--kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-~~i~l~~Gd~~e~l  121 (214)
T d2cl5a1          45 GQIMDAVIREY--SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-DKVTILNGASQDLI  121 (214)
T ss_dssp             HHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHG
T ss_pred             HHHHHHHHHhh--CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-ccceeeeccccccc
Confidence            34555555554  5679999999999999999873  4679999999999999999999999986 6899999998653 


Q ss_pred             C-----CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          189 P-----VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       189 ~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +     +..+.||+|++...-.. ......+.+..++|+|||++++-+
T Consensus       122 ~~l~~~~~~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         122 PQLKKKYDVDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             GGHHHHSCCCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cchhhcccccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeC
Confidence            2     34578999998632221 112335777889999999866633

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.30  E-value=8.1e-12  Score=104.57  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             HHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----C
Q 022248          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----P  189 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~  189 (300)
                      ++...+... .++.+|||++||+|.++.+++. .+++|++||.|+.+++.|+++++.+++...+++|+++|+.+.    .
T Consensus       122 ~~~~~~~~~-~~~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~  199 (309)
T d2igta1         122 WLKNAVETA-DRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  199 (309)
T ss_dssp             HHHHHHHHS-SSCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHhhc-cCCCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence            334444333 3678999999999999999886 466999999999999999999999988756799999998653    2


Q ss_pred             CCCCcccEEEEc---ccc------cCc-ccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          190 VSDASVDAVVGT---LVL------CSV-KDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~~~~~D~v~~~---~~l------~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ...+.||+|++.   +..      ..+ .+...++..+.++|+|||.+++....
T Consensus       200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            235789999983   211      111 23355677888999999987776643

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-10  Score=93.43  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-
Q 022248          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-  188 (300)
                      ..++..+....  +.++|||||||+|+.+..+++.  .+.+++.+|.++...+.|++.++..++. ++++++.+|+.+. 
T Consensus        48 g~lL~~L~~~~--~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-~~i~~~~Gda~e~l  124 (219)
T d2avda1          48 AQLLANLARLI--QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHH
T ss_pred             HHHHHHHHHcc--CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-ceEEEEEeehhhcc
Confidence            34444444443  6789999999999999999873  4679999999999999999999999986 6899999998542 


Q ss_pred             C-----CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          189 P-----VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       189 ~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +     ...++||+|+...--   .+....++.+.+.|+|||.+++-+.
T Consensus       125 ~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            1     346789999986432   3456678889999999999999654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=2.6e-11  Score=95.10  Aligned_cols=68  Identities=16%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      ..+++|||+|||+|.++..++.....+|+|+|+++.+++.|++++       .+++|+++|+..++   +.||+|+++
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-------~~~~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-------GGVNFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-------TTSEEEECCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-------ccccEEEEehhhcC---CcceEEEeC
Confidence            478899999999999988877655568999999999999999875       47899999998765   689999986

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.3e-10  Score=91.32  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcccE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASVDA  197 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~  197 (300)
                      +..++||+|||+|..+..|+. .++.+++|+|+++.+++.|+++++..++. .++.++..+....      ...++.||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-cceeeeeeccHHhhhhhhhhcccCceeE
Confidence            456899999999999888876 46789999999999999999999999886 6788877654332      124578999


Q ss_pred             EEEcccc
Q 022248          198 VVGTLVL  204 (300)
Q Consensus       198 v~~~~~l  204 (300)
                      |+|+=-.
T Consensus       140 ivsNPPY  146 (250)
T d2h00a1         140 CMCNPPF  146 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9997533

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.21  E-value=4.2e-11  Score=94.25  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             CCCCeEEEECCCCChh----HHHhHh-----CCCceEEEEcCCHHHHHHHHHHH--------------HH----cCCC--
Q 022248          124 GKAKKVLEIGIGTGPN----LKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA--------------VA----AGLP--  174 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~----~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~--------------~~----~~~~--  174 (300)
                      .+..+||++|||+|.-    +..+.+     ....+++|+|+++.+++.|++..              ..    .+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3567999999999963    222332     13468999999999999998521              00    0000  


Q ss_pred             ---------CCCEEEEecccCcC-CCCCCcccEEEEcccccCcccH--HHHHHHHHHcccCCcEEEEE
Q 022248          175 ---------LTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDV--DMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       175 ---------~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~  230 (300)
                               ...+.+...+.... +...+.||+|+|.++|.++++.  ..+++++++.|+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     01344555544432 2345789999999999999755  67899999999999988873

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=9.3e-11  Score=91.42  Aligned_cols=104  Identities=8%  Similarity=-0.013  Sum_probs=81.8

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~  203 (300)
                      .+.+|||++||+|.++...+.+...+|+.||.++.+++.++++++..+.  .++.++..|+... ......||+|++.=-
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~--~~~~ii~~d~~~~l~~~~~~fDlIf~DPP  120 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPP  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc--cceeeeeecccccccccccccCEEEEcCc
Confidence            6789999999999999988776677999999999999999999988765  4789999998653 445678999998521


Q ss_pred             ccCcccHHHHHHHHHH--cccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRR--VLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~--~LkpgG~l~~~~  231 (300)
                       +........+..+.+  +|+++|.+++..
T Consensus       121 -Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         121 -FRRGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             -SSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -cccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence             222334555666654  699999988854

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=5.5e-11  Score=91.68  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+|||+|.++..++.. +++++++|.++.+++.++++++..++. .++....+|..  ......++||+|++.
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeEEc
Confidence            46789999999999999987765 568999999999999999999998875 34444444431  123345789999984


Q ss_pred             ccccCcccHHHHHHHH--HHcccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEV--RRVLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~  231 (300)
                      = .+.. +....+.++  ..+|+|||++++..
T Consensus       118 P-PY~~-~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         118 P-PYAM-DLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             C-CTTS-CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             c-cccc-CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            1 1111 222233333  35799999888754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=1.2e-10  Score=92.13  Aligned_cols=73  Identities=18%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      ..+.+|||+|||+|.++..++.....+|+|+|+++.+++.++++++..+.   +..++.+|+..+   ++.||+|+++-
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~---~~~~~~~d~~~~---~~~fD~Vi~nP  117 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEF---NSRVDIVIMNP  117 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGC---CCCCSEEEECC
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC---CceEEECchhhh---CCcCcEEEEcC
Confidence            36889999999999999888776556999999999999999999887764   688999998776   36799999854

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.13  E-value=1.6e-10  Score=89.96  Aligned_cols=105  Identities=10%  Similarity=0.067  Sum_probs=82.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----CCCCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~  200 (300)
                      .+.+|||++||+|.++...+.+...++++||.++.+++.++++++..+.. .+++++.+|+...    .-....||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc-cccccccccchhhhhhhcccCCCcceEEe
Confidence            68899999999999999888776778999999999999999999888764 5899999998652    224568999987


Q ss_pred             cccccCcccHHHHHHHHHH--cccCCcEEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRR--VLKPGGIYLFVE  231 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~  231 (300)
                      .= .+...+....+..+..  +|+|+|.+++..
T Consensus       120 DP-PY~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         120 DP-PYAKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             CC-CGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ch-hhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            42 2223345666777654  699999887644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.7e-10  Score=94.98  Aligned_cols=76  Identities=22%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~  201 (300)
                      +..+|+|+|||+|..+..++..+..+++++|+|+.+++.|+++++..++. .++.+..+++... +...+.||+|+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~-~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-DRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-TSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC-ceeEEeecccccccccccCcccEEEEc
Confidence            45689999999999999888878889999999999999999999998875 5778888887653 3344789999986

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.08  E-value=5.4e-10  Score=89.65  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-C
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~  189 (300)
                      .++..++...  +.++|||||+++|+.+..+++  ..+.+++.+|.++...+.|++.++..|+. ++++++.+++.+. +
T Consensus        49 ~~L~~L~~~~--~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-~~i~~~~g~a~~~L~  125 (227)
T d1susa1          49 QFLSMLLKLI--NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVLD  125 (227)
T ss_dssp             HHHHHHHHHH--TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHH
T ss_pred             HHHHHHHHhc--CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-cceeeeehHHHHHHH
Confidence            3444444443  678999999999999999986  34679999999999999999999999986 6899999998542 2


Q ss_pred             ------CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          190 ------VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 ------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                            ...+.||+|+...--   ......++.+.++|+|||.+++-+.
T Consensus       126 ~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         126 EMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             HHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence                  135689999986422   4566778899999999999998653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.8e-08  Score=86.63  Aligned_cols=149  Identities=20%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC----
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----  188 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----  188 (300)
                      +...+++.+. .++.+|||+-||.|.++..|++ ...+|+|+|.++.+++.|+++++.+++.  ++.|+.++.+..    
T Consensus       200 l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n~i~--n~~~~~~~~~~~~~~~  276 (358)
T d1uwva2         200 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNGLQ--NVTFYHENLEEDVTKQ  276 (358)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCTTSCCSSS
T ss_pred             HHHHHHHhhccCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhcccc--cceeeecchhhhhhhh
Confidence            3334444443 4578999999999999999986 4569999999999999999999999985  999999988663    


Q ss_pred             CCCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHH
Q 022248          189 PVSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNN  268 (300)
Q Consensus       189 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (300)
                      ......+|+|+..=-=.   ...+.++.+.+ ++|.-.+++++...    ++   .                  .++. .
T Consensus       277 ~~~~~~~d~vilDPPR~---G~~~~~~~l~~-~~~~~ivYVSCnp~----Tl---a------------------RDl~-~  326 (358)
T d1uwva2         277 PWAKNGFDKVLLDPARA---GAAGVMQQIIK-LEPIRIVYVSCNPA----TL---A------------------RDSE-A  326 (358)
T ss_dssp             GGGTTCCSEEEECCCTT---CCHHHHHHHHH-HCCSEEEEEESCHH----HH---H------------------HHHH-H
T ss_pred             hhhhccCceEEeCCCCc---cHHHHHHHHHH-cCCCEEEEEeCCHH----HH---H------------------HHHH-H
Confidence            23346799998731100   11235566555 37777777776311    11   1                  1333 3


Q ss_pred             HHhcCCcEEEEeeeccCCcccccceeeEEe
Q 022248          269 ISEAGFSSVELGNAFLSNASLISPHVYGIA  298 (300)
Q Consensus       269 l~~aGf~~v~~~~~~~~~~~~~~~~~~~~~  298 (300)
                      |.+.||++..+.-.++   |+.|+|+.-++
T Consensus       327 l~~~gy~l~~i~~~D~---FP~T~HvE~v~  353 (358)
T d1uwva2         327 LLKAGYTIARLAMLDM---FPHTGHLESMV  353 (358)
T ss_dssp             HHHTTCEEEEEEEECC---STTSSCCEEEE
T ss_pred             HHHCCCeEeEEEEEec---CCCCccEEEEE
Confidence            5578999888877666   66778866554

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.95  E-value=4.3e-09  Score=87.03  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc--------CCCCCCEEEEecccCcCCCCCCcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--------GLPLTNFKFLQAVGEAIPVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~  195 (300)
                      +++.+||-||+|.|..+..+++....+++.||+++.+++.|++.+...        ....++++++.+|+...--.+++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            577899999999999999988766678999999999999999765321        122368999999986542235789


Q ss_pred             cEEEEcccccCc-cc---HHHHHHHHHHcccCCcEEEEEe
Q 022248          196 DAVVGTLVLCSV-KD---VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       196 D~v~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      |+|++...-..- +.   -.++++.+++.|+|||++++-.
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            999974332211 11   1568999999999999988754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.2e-08  Score=80.35  Aligned_cols=100  Identities=13%  Similarity=0.214  Sum_probs=86.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|+|+|+|.|.-+..++- .+..+++.+|.+..-+...+......++.  +++++...++.... +..||+|++.. 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~~-~~~fD~V~sRA-  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFPS-EPPFDGVISRA-  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSCC-CSCEEEEECSC-
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc--ceeeeccchhhhcc-ccccceehhhh-
Confidence            567999999999999888875 68889999999999999999999998874  89999999998753 46899999853 


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                         +.+...++.-+...++++|.+++.-
T Consensus       141 ---~~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         141 ---FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ---SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ---hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence               4567778899999999999999965

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=6.3e-09  Score=80.77  Aligned_cols=106  Identities=9%  Similarity=0.035  Sum_probs=81.2

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc---CCCCCCcccEEEEc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IPVSDASVDAVVGT  201 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~  201 (300)
                      .+.+|||+.||+|.++.+.+.+...+++.||.+..+++..+++++..+.......+...|+..   .......||+|++.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            678999999999999999998777899999999999999999999887754567777776543   23345679999873


Q ss_pred             ccccCcccHHHHHHHHHH--cccCCcEEEEEe
Q 022248          202 LVLCSVKDVDMTLQEVRR--VLKPGGIYLFVE  231 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~  231 (300)
                      = .+........+..+..  +|+++|.+++..
T Consensus       123 P-PY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         123 P-PFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             C-CSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             h-hHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            2 2222334556666654  799999888854

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=4.9e-08  Score=80.90  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+++||-||.|.|..+..+++.. ..+++++|+++.+++.+++.+...  .+..++++++.+|+... .-.++.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            467899999999999999998754 568999999999999999876542  23347999999998653 33457899999


Q ss_pred             EcccccC-cc----cHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCS-VK----DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~-~~----~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +...-.. .+    --.++++.+++.|+|||++++-.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            7533221 11    12578999999999999988754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=5.6e-09  Score=87.68  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--C-CCCCCEEEEecccCcC-CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--G-LPLTNFKFLQAVGEAI-PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~-~~~~~~~~~~~d~~~~-~~~~~~~D~v  198 (300)
                      +.+++||.||.|.|..+..+++. +..++++||+++.+++.+++.+...  + ...++++++.+|+... .-.++.||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            46789999999999999998875 4568999999999999999987442  1 2346899999999663 2335789999


Q ss_pred             EEcccccC----cc-c--HHHHHHHHHHcccCCcEEEEEe
Q 022248          199 VGTLVLCS----VK-D--VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       199 ~~~~~l~~----~~-~--~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++...-..    .+ .  -.++++.+++.|+|||++++-.
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96432111    11 1  1578999999999999988743

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=1.4e-07  Score=77.55  Aligned_cols=108  Identities=16%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+.+||-||.|.|..+..+++. ...+++.+|+++.+++.|++.+...  .+..++++++.+|+... .-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            46789999999999999999875 4568999999999999999986532  23457999999998652 33457899999


Q ss_pred             EcccccCc--c--cHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSV--K--DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~--~--~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ....-..-  .  --.++++.+.+.|+|||+++.-.
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            75322111  1  12578999999999999988754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=2.4e-08  Score=84.83  Aligned_cols=120  Identities=23%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhhc--CCCCeEEEECCCCChhHHHhHh------CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe
Q 022248          111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ  182 (300)
Q Consensus       111 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~------~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~  182 (300)
                      +...+..++..+.  .++.+|||.|||+|.++..+.+      ....+++|+|+++.+++.|+..+...+.   ...+..
T Consensus       101 i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~---~~~~~~  177 (328)
T d2f8la1         101 IGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLH  177 (328)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---hhhhhc
Confidence            3344444444332  3567899999999999988764      1345899999999999999988776654   456667


Q ss_pred             cccCcCCCCCCcccEEEEcccccCcc-----------------c-HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          183 AVGEAIPVSDASVDAVVGTLVLCSVK-----------------D-VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       183 ~d~~~~~~~~~~~D~v~~~~~l~~~~-----------------~-~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|..... ....||+|+++--.....                 + ...++..+.+.|+|||+++++.+..
T Consensus       178 ~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         178 QDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             SCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            7654433 357899999863221110                 1 1246899999999999998887543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.80  E-value=5.5e-08  Score=80.96  Aligned_cols=108  Identities=17%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+++||-||.|.|..+..+++.. ..+++.+|+++.+++.+++.+...  .+..++++++.+|+... .-..+.||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            467899999999999999998854 468999999999999999876432  23347899999998653 22457899999


Q ss_pred             EcccccCcc----cHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVK----DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +...-..-+    --..+++.+++.|+|||++++-.
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            854321111    11467899999999999988854

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=2e-07  Score=74.65  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC---CCCcccEEEE
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~  200 (300)
                      ...+|+|||+|.|.-+..++- .++.+++.+|.+..-+...+......++.  ++.++...++.+..   ..+.||+|++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~--n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC--CcEEEeehhhhccccccccccceEEEE
Confidence            467999999999998888875 67889999999999999999999988985  89999988887642   2368999999


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      .    .+.....++.-+...+++||.+++.--...     ...+                  ++..+.+...|++...+.
T Consensus       148 R----Ava~l~~ll~~~~~~l~~~g~~i~~KG~~~-----~~El------------------~~a~~~~~~~~~~~~~v~  200 (239)
T d1xdza_         148 R----AVARLSVLSELCLPLVKKNGLFVALKAASA-----EEEL------------------NAGKKAITTLGGELENIH  200 (239)
T ss_dssp             E----CCSCHHHHHHHHGGGEEEEEEEEEEECC-C-----HHHH------------------HHHHHHHHHTTEEEEEEE
T ss_pred             h----hhhCHHHHHHHHhhhcccCCEEEEECCCCh-----HHHH------------------HHHHHHHHHcCCEEEEEE
Confidence            5    456777889999999999999999662110     1111                  255567778888887776


Q ss_pred             eeccC
Q 022248          281 NAFLS  285 (300)
Q Consensus       281 ~~~~~  285 (300)
                      ...+.
T Consensus       201 ~~~lp  205 (239)
T d1xdza_         201 SFKLP  205 (239)
T ss_dssp             EEECT
T ss_pred             EEeCC
Confidence            65543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=8.2e-08  Score=79.54  Aligned_cols=109  Identities=23%  Similarity=0.218  Sum_probs=83.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHH--cCCCCCCEEEEecccCcC--CCCCCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAI--PVSDASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~--~~~~~~~D~v  198 (300)
                      +.+++||=||.|.|..+..+++... .+++.+|+++.+++.+++.+..  .....++++++.+|+...  ...++.||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4678999999999999999988544 5899999999999999997643  223347999999998553  2345689999


Q ss_pred             EEcccccC-ccc---HHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCS-VKD---VDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~-~~~---~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +....-.. .+.   -.++++.+++.|+|||++++-..
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            97432211 111   25689999999999999998653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=1.9e-08  Score=77.56  Aligned_cols=113  Identities=17%  Similarity=0.247  Sum_probs=86.5

Q ss_pred             HHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----
Q 022248          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----  189 (300)
Q Consensus       116 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----  189 (300)
                      .++++.+. .++..++|..+|.|..+..+++. +.+++|+|.++.+++.+++..      .+++.++..++..+.     
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~------~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH------LPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC------CTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc------ccceeEeehHHHHHHHHHHH
Confidence            34444443 67899999999999999999985 569999999999999987642      258999999886642     


Q ss_pred             CCCCcccEEEEcccccCc---------ccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          190 VSDASVDAVVGTLVLCSV---------KDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      ...+.+|.|+....+...         ......|.....+|+|||.+++..+...
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            345789999986654432         1234568888999999999999987544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.3e-08  Score=80.47  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHc--CCCCCCEEEEecccCcC-CCCCCcccEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  199 (300)
                      +.+++||-||.|.|..+..+.+. ...+++.+|+++.+++.+++.+...  ....++++++.+|+... .-..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            46789999999999999999875 4579999999999999999976532  23347999999998653 23457899999


Q ss_pred             Eccccc-Cccc---HHHHHHHHHHcccCCcEEEEEecc
Q 022248          200 GTLVLC-SVKD---VDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       200 ~~~~l~-~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +...-. ..+.   -.++++.+++.|+|||.+++-...
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            853211 1111   135799999999999999886533

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.71  E-value=2.8e-08  Score=79.94  Aligned_cols=91  Identities=15%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             HHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCC
Q 022248          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (300)
Q Consensus       114 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  192 (300)
                      .+.++++.+. .++.+|||||||+|.++..|++. +.++++||+++.+++.++++...    .++++++.+|+.+++++.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~----~~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD----HDNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT----CCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc----ccchhhhhhhhhhccccc
Confidence            3455555554 57899999999999999999975 56999999999999998887543    258999999999987765


Q ss_pred             CcccEEEEcccccCcccH
Q 022248          193 ASVDAVVGTLVLCSVKDV  210 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~  210 (300)
                      .... .+..+..+++..+
T Consensus        84 ~~~~-~vv~NLPYnIss~  100 (235)
T d1qama_          84 NQSY-KIFGNIPYNISTD  100 (235)
T ss_dssp             SCCC-EEEEECCGGGHHH
T ss_pred             cccc-eeeeeehhhhhHH
Confidence            4433 3445666666433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=3.8e-07  Score=76.43  Aligned_cols=110  Identities=16%  Similarity=0.206  Sum_probs=86.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||+++|.|.=+..++.  .....++++|.++.-++.++++++..+..  ++.+...|...++...+.||.|++.
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~--~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL--NVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh--ccccccccccccccccccccEEEEc
Confidence            5788999999999998888876  34568999999999999999999998874  8888888887777667889999962


Q ss_pred             ------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          202 ------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       202 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                            .++..-++                ..+++.+..+.|||||+++.++....
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence                  22221111                13578999999999999999885443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.53  E-value=1.8e-07  Score=74.45  Aligned_cols=99  Identities=23%  Similarity=0.303  Sum_probs=71.1

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+|||.|||+|.++..+.+  .....++|+|+++..+..+           ....++.+|..... ....||+|+++
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~fd~ii~n   85 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWE-PGEAFDLILGN   85 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCC-CSSCEEEEEEC
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-----------ccceeeeeehhccc-cccccceeccc
Confidence            4678999999999999888865  3456799999998754332           24577788776654 34789999986


Q ss_pred             ccccCcc----------------------------c-HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          202 LVLCSVK----------------------------D-VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       202 ~~l~~~~----------------------------~-~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      --.....                            + ...++....+.|+|||++.++.+..
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            4322110                            0 1345788899999999999987543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4e-07  Score=69.93  Aligned_cols=98  Identities=19%  Similarity=0.299  Sum_probs=73.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  193 (300)
                      .++.+|||+||+.|.++..+.+  .....++++|+.+-           ..  .+++.++.+|.....        ...+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~--i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP--IVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC--CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc--cCCceEeecccccchhhhhhhhhccCc
Confidence            6788999999999999998876  35568999998662           11  258899999986532        2457


Q ss_pred             cccEEEEcccccCccc----H-------HHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKD----V-------DMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~----~-------~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+|+|++..+...-.+    .       ...+.-+.++|++||.+++-.+..
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence            8999999776554321    1       245777889999999999988654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.49  E-value=7e-09  Score=83.99  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      +.++++.+. .++.+|||||||+|.++..|++. +.++++||+++.+++.++++...    .++++++.+|+.+++++..
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~----~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT----CSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh----ccchhhhhhhhhccccccc
Confidence            344555544 46789999999999999999975 56999999999998888765432    2589999999999988766


Q ss_pred             cccEEEEcccccCcccH
Q 022248          194 SVDAVVGTLVLCSVKDV  210 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~  210 (300)
                      .++.|+ .+..+++..+
T Consensus        93 ~~~~vv-~NLPY~Ist~  108 (245)
T d1yuba_          93 QRYKIV-GNIPYHLSTQ  108 (245)
T ss_dssp             SEEEEE-EECCSSSCHH
T ss_pred             eeeeEe-eeeehhhhHH
Confidence            666555 4555666443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.39  E-value=3e-07  Score=73.41  Aligned_cols=106  Identities=15%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             HHHHHhhcCCCCeEEEECCCCChhHHHhHh-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-
Q 022248          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (300)
Q Consensus       116 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-  189 (300)
                      .+++..+  ++.+|||||++.|..+..++.     ....+++++|+.+.........       .++++++.+|..... 
T Consensus        73 ~eli~~~--KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~-------~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          73 HDMLWEL--RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-------MENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHHH--CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-------CTTEEEEECCSSCSGG
T ss_pred             HHHHHHh--CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc-------ccceeeeecccccHHH
Confidence            3444444  678999999999987766653     2467999999976543222111       258999999875432 


Q ss_pred             ---CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          190 ---VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       190 ---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                         +....+|+|+.-.. |........+ ++...|+|||++++-+.
T Consensus       144 ~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         144 FEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence               34556888887543 4433222233 45689999999999763

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.3e-06  Score=69.06  Aligned_cols=88  Identities=14%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (300)
                      ..++++... .++..|||||+|.|.++..|++. +.+++++|+++.+++..++.+...... .+++++.+|+...+++  
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~-~~~~~i~~D~l~~~~~--   85 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTDLP--   85 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSCCC--
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccc-cchhhhHHHHhhhhhh--
Confidence            344444443 46789999999999999999975 469999999999999999887654332 5899999999887654  


Q ss_pred             cccEEEEcccccCc
Q 022248          194 SVDAVVGTLVLCSV  207 (300)
Q Consensus       194 ~~D~v~~~~~l~~~  207 (300)
                      .++.|+. +..+++
T Consensus        86 ~~~~vV~-NLPY~I   98 (278)
T d1zq9a1          86 FFDTCVA-NLPYQI   98 (278)
T ss_dssp             CCSEEEE-ECCGGG
T ss_pred             hhhhhhc-chHHHH
Confidence            3455554 333443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.2e-05  Score=66.43  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=78.7

Q ss_pred             CCCCeEEEECCCCChhHHHhHh--CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC---CCcccEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAV  198 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v  198 (300)
                      .++.+|||+++|.|.-+.+++.  .....++++|+++.-++.++++++..++.  ++.+...|...+...   .+.||.|
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~--~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc--ceeeeehhhhhhcccccccceeeEE
Confidence            5788999999999998888876  35678999999999999999999999974  899999988776432   2579999


Q ss_pred             EEc------ccccCccc------------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          199 VGT------LVLCSVKD------------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       199 ~~~------~~l~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      ++.      .++...++                  ...++.... .|+|||.|+.++....
T Consensus       171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~  230 (293)
T d2b9ea1         171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC  230 (293)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred             eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence            963      11111110                  012344444 4799999998875443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4.8e-06  Score=68.61  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=81.8

Q ss_pred             CCCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-CCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~  201 (300)
                      .++.+|||+++|.|.=+.++++ .....++++|+++.-++..+++++..++.  ++.....+.... ....+.||.|++.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~--~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc--ceeeeccccccchhcccccccEEEEe
Confidence            5788999999999998888876 34468999999999999999999999874  555554444322 1234689999952


Q ss_pred             ------ccccCccc----------------HHHHHHHHHHcccCCcEEEEEecccC
Q 022248          202 ------LVLCSVKD----------------VDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       202 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                            .++..-++                ...+|.+..+.|||||+|+.++-...
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence                  23322222                13578999999999999999885543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.16  E-value=5.5e-06  Score=72.38  Aligned_cols=109  Identities=19%  Similarity=0.108  Sum_probs=80.2

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC---C-----------CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD---T-----------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~---~-----------~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  189 (300)
                      .++.+|+|.+||+|.++..+.+.   .           ...++|+|+++.+...|+.++.-.+.......+...|....+
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~  240 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  240 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence            35789999999999999887652   1           135999999999999999988776665445566777765443


Q ss_pred             CCCCcccEEEEccccc--Cc--------------c-cHHHHHHHHHHcccCCcEEEEEecc
Q 022248          190 VSDASVDAVVGTLVLC--SV--------------K-DVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~--~~--------------~-~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                       ....||+|+++--..  ..              . ....++..+.+.|++||++.++.+.
T Consensus       241 -~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         241 -PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             -CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             -cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence             457899999853221  10              0 1235899999999999999998753

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=2.6e-06  Score=68.76  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             HHHHHHhhc-CCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC
Q 022248          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (300)
Q Consensus       115 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  190 (300)
                      .+++++.+. .++..|||||||.|.++..|++. +.++++||+++.+++.+++....    .++++++.+|+.+.++
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~----~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT----GGGEEEECSCGGGCCH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh----ccchhHHhhhhhhhcc
Confidence            334444443 46789999999999999999975 56999999999999988764322    2589999999987653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=1.4e-05  Score=68.19  Aligned_cols=103  Identities=13%  Similarity=-0.044  Sum_probs=78.1

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCC-------------CCEEEEecccCcCC-
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-------------TNFKFLQAVGEAIP-  189 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~-------------~~~~~~~~d~~~~~-  189 (300)
                      ++.+|||..||+|..++.++. .....|+++|+|+.+++.++++++.++...             ..+.+...|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            678999999999999987665 345589999999999999999999887531             13455555654332 


Q ss_pred             CCCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          190 VSDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       190 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      -....||+|...    .+..+..++....+.++.||.|.+..
T Consensus       125 ~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEe
Confidence            234679998873    24455668899999999999999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.72  E-value=8.5e-05  Score=58.66  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcc
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  202 (300)
                      .+..+|+|+|||.|.++..++... ...+.|+|+--...+. -......+.  .-+++...+.. ...+++..|+|+|..
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~--ni~~~~~~~dv-~~l~~~~~D~vlcDm  140 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW--NLVRLQSGVDV-FFIPPERCDTLLCDI  140 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG--GGEEEECSCCT-TTSCCCCCSEEEECC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc--ccccchhhhhH-HhcCCCcCCEEEeeC
Confidence            577899999999999999988643 3567788773221000 000000011  12344333211 123467899999986


Q ss_pred             cccCcccH-------HHHHHHHHHcccCCcEEEEEecccC
Q 022248          203 VLCSVKDV-------DMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       203 ~l~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      +-. -++.       ..+++-+.++|+|||.|++-.+.+.
T Consensus       141 ~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         141 GES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             CCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            543 2222       2467778899999999988776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=9e-05  Score=56.47  Aligned_cols=96  Identities=19%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC--------C-CCC
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--------P-VSD  192 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--------~-~~~  192 (300)
                      .++.+||-+|+| .|.+...+++..+. +|+++|.++..++.+++.    |..    .++...-...        . ...
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~vi~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD----LTLNRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS----EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce----EEEeccccchHHHHHHHHHhhCC
Confidence            468899999997 46777788876665 799999999998888653    321    1221111110        0 123


Q ss_pred             CcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          193 ASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       193 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      ..+|+|+..-.-      ...++...+.|+|||+++++...
T Consensus        99 ~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          99 RGADFILEATGD------SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             SCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEeec
Confidence            469999854322      12468888999999999987643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00015  Score=64.70  Aligned_cols=111  Identities=13%  Similarity=0.000  Sum_probs=72.3

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC----C---------------CceEEEEcCCHHHHHHHHHHHHHcCCCCC---CEEEE
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD----T---------------DVQVLGVDPNRKMEKYAQTAAVAAGLPLT---NFKFL  181 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~~~giD~s~~~~~~a~~~~~~~~~~~~---~~~~~  181 (300)
                      .++.+|+|.+||+|.++..+.+.    .               ...++|+|+++.+...|+.++--.+....   ...+.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~  242 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  242 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence            35679999999999998776541    1               12589999999999999988765443210   11122


Q ss_pred             ecccCcC-CCCCCcccEEEEccccc--Cc-----------cc-HHHHHHHHHHcccCCcEEEEEeccc
Q 022248          182 QAVGEAI-PVSDASVDAVVGTLVLC--SV-----------KD-VDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       182 ~~d~~~~-~~~~~~~D~v~~~~~l~--~~-----------~~-~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ..+.... ......||+|+++=-..  ..           .+ ...++..+.+.|+|||++.++.+..
T Consensus       243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            2222211 12346799999853111  10           11 2357999999999999999987643

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.38  E-value=0.0015  Score=54.69  Aligned_cols=157  Identities=10%  Similarity=0.036  Sum_probs=89.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh-----------------CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCC--EEEEeccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-----------------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN--FKFLQAVG  185 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-----------------~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~d~  185 (300)
                      +..+|.|+||.+|..+..+..                 .+..++..-|+...=....-+.+....-..++  +.-+.+.+
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF  130 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence            346799999999977654332                 13456666676443333333222111110011  12234454


Q ss_pred             CcCCCCCCcccEEEEcccccCcc---------------------------------cHHHHHHHHHHcccCCcEEEEEec
Q 022248          186 EAIPVSDASVDAVVGTLVLCSVK---------------------------------DVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       186 ~~~~~~~~~~D~v~~~~~l~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..--||+++.|++++.+++||+.                                 |...+|+.=.+-|+|||++++...
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            44447899999999999999873                                 123467777788899999999876


Q ss_pred             ccCCC-----------chHHHHHHHhhhhh-------hh-hhcCCcccchHHHHHHHhc-CCcEEEEee
Q 022248          233 VAAKD-----------GTFLKFWQNVVDPL-------QQ-IVSDGCHLTRQTGNNISEA-GFSSVELGN  281 (300)
Q Consensus       233 ~~~~~-----------~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~a-Gf~~v~~~~  281 (300)
                      .+...           ..+...|..+....       .. .....+.+.+|++..+++. .|++..++.
T Consensus       211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~  279 (359)
T d1m6ex_         211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEA  279 (359)
T ss_dssp             ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEE
T ss_pred             ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEe
Confidence            55322           11222222222111       00 0112346789999999774 466666653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.36  E-value=0.00062  Score=50.90  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc-CcC--------CCCCC
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI--------PVSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~--------~~~~~  193 (300)
                      .++.+||-+||| .|.++.++++..+.+++++|.++.-++.|++.    +.   ...+..... ++.        ....+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga---~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA---DVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC---cEEEeccccccccchhhhhhhccccc
Confidence            578899999987 67777777777788999999999988888764    21   222221111 110        01135


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+|+|+-.-      .-...+....+.|+|+|++++.....
T Consensus        98 g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          98 LPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             CCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             CCceeeecC------CChHHHHHHHHHHhcCCceEEEecCC
Confidence            689998532      22345788889999999999987544

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.23  E-value=0.00063  Score=51.21  Aligned_cols=97  Identities=24%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||=+|||. |.++..+++..+. +++++|.++.-++.+++.    |.    ..++...-+..     . .....+
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga----~~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA----TDILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC----SEEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc----cccccccchhHHHHHHHHhhccCc
Confidence            5788899899986 7888888886665 799999999988888754    21    12222211111     0 123459


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |+|+-.-.-.      ..++...+.++|+|.++++....
T Consensus        98 D~vid~~g~~------~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          98 DRVIMAGGGS------ETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             EEEEECSSCT------THHHHHHHHEEEEEEEEECCCCC
T ss_pred             ceEEEccCCH------HHHHHHHHHHhcCCEEEEEeecC
Confidence            9998643322      24688889999999999987543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=5.4e-05  Score=56.98  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEec-ccCc-CCCCCCcccEEEE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEA-IPVSDASVDAVVG  200 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~~D~v~~  200 (300)
                      .++.+||-+|+| .|.++..+++..+.+++++|.++..++.+++.    |..    .++.. +..+ .....+.+|+|+.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~----~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD----HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS----EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc----EEeeccchHHHHHhhhcccceEEE
Confidence            678999999997 67777787777788999999999988887764    321    22211 1111 1112357998886


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .-.-..-.    .+....+.|+|+|+++++....
T Consensus        98 ~~~~~~~~----~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          98 CASSLTDI----DFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CCSCSTTC----CTTTGGGGEEEEEEEEECCCCC
T ss_pred             EecCCccc----hHHHHHHHhhccceEEEecccc
Confidence            43221110    1356788999999999986433

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.17  E-value=0.034  Score=45.03  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=93.4

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEecccCcC--------CCCCCcc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI--------PVSDASV  195 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~--------~~~~~~~  195 (300)
                      ....|+.+|||--.-...+....+..++-+|. +.+++.-++.+.+.+.. ..+..++..|+..-        .+..+.-
T Consensus        89 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p  167 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  167 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence            34567779999877665553345678888885 77887777777776543 24567777777541        1333445


Q ss_pred             cEEEEcccccCcc--cHHHHHHHHHHcccCCcEEEEEecccCCCchHHHHH---HHhhhhhhhh-------hcCCcccch
Q 022248          196 DAVVGTLVLCSVK--DVDMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFW---QNVVDPLQQI-------VSDGCHLTR  263 (300)
Q Consensus       196 D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~  263 (300)
                      -++++-.++.+++  ....+++.+.....||+.+++-..............   ..........       .........
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  247 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchh
Confidence            5667777888885  446789999999999999888543332221111111   1111110000       000122345


Q ss_pred             HHHHHHHhcCCcEEEEe
Q 022248          264 QTGNNISEAGFSSVELG  280 (300)
Q Consensus       264 ~~~~~l~~aGf~~v~~~  280 (300)
                      +....|...||+.....
T Consensus       248 ~~~~~l~~~Gw~~~~~~  264 (297)
T d2uyoa1         248 VVADWLNRHGWRATAQS  264 (297)
T ss_dssp             CHHHHHTTTTEEEEEEE
T ss_pred             hHHHHHHhCCCEEEEec
Confidence            78899999999866553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0012  Score=49.12  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=64.0

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc-CCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~  201 (300)
                      .++.+||=+|+| .|.++.++++..+.+++++|.++.-.+.+++.    |.    -.++...-.. .....+.+|+++..
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga----d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA----DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC----SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC----cEEEECchhhHHHHhcCCCceeeee
Confidence            578899999986 46677777777788999999999877776653    32    1222221111 11223579998864


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      -.-..      .+....+.|+|+|+++++...
T Consensus       101 ~g~~~------~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1uufa2         101 VAAPH------NLDDFTTLLKRDGTMTLVGAP  126 (168)
T ss_dssp             CSSCC------CHHHHHTTEEEEEEEEECCCC
T ss_pred             eecch------hHHHHHHHHhcCCEEEEeccC
Confidence            43222      257788999999999998643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.001  Score=49.88  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~  195 (300)
                      .++.+||-.|+  |.|.++..+++..+.++++++.+++..+.+++    .|..    .++...-.++      ......+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~----~vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH----EVFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS----EEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc----cccccccccHHHHhhhhhccCCc
Confidence            57889999996  56778888888788899999988877666654    3432    2221111111      1234679


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+....       ...++...+.|+|+|+++.+..
T Consensus        99 d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          99 DIIIEMLA-------NVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             EEEEESCH-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             eEEeeccc-------HHHHHHHHhccCCCCEEEEEec
Confidence            99997431       2357888899999999999754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.76  E-value=0.00085  Score=49.90  Aligned_cols=95  Identities=18%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~  197 (300)
                      .++.+||=+|+| .|.++..+++..+.+++++|.++.-++.+++.    |.    ..++...-++.     ....+.+|.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga----~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA----SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC----SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc----cccccccchhHHHHHHHhhcCCccc
Confidence            577888889986 45666777776778999999999988877653    32    12232221111     011233444


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      |++...       ...++...+.|+|+|+++++...
T Consensus        98 i~~~~~-------~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          98 LVTAVS-------NSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             EECCSC-------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred             cccccc-------chHHHHHHHHhcCCcEEEEEEec
Confidence            443221       23568889999999999997643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.75  E-value=0.0024  Score=48.84  Aligned_cols=101  Identities=17%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----C-CCCCcc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----P-VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~~  195 (300)
                      .++.+||-+|||. |.++..+++. ....++++|.++..++.|++.    |.    ..++...-+++     . .....+
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga----~~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc----cEEEeCCCcCHHHHHHHHhCCCCc
Confidence            5789999999987 5566666653 455899999999998888764    21    12221111111     0 123568


Q ss_pred             cEEEEccccc------Cc---ccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLC------SV---KDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~------~~---~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+++-.-...      +.   ......++.+.+.++|||++.++..
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            9998543211      11   1234678999999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.55  E-value=0.0052  Score=45.74  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=62.2

Q ss_pred             CCCCeEEEECCCCC-hhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----CCCCccc
Q 022248          124 GKAKKVLEIGIGTG-PNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D  196 (300)
                      .++.+||=+|+|.. .++..+++ .....++++|.++.-++.+++.    +.    ..++..+-+...     .....+|
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga----~~~i~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA----DHVVDARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC----SEEEETTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc----ceeecCcccHHHHHHHhhCCCCce
Confidence            57789999999743 45456665 3456889999999887777754    21    223322211110     1235699


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecc
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHV  233 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  233 (300)
                      +|+....-      ...++...+.|+++|+++++...
T Consensus       103 ~vid~~g~------~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2         103 VAMDFVGS------QATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             EEEESSCC------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred             EEEEecCc------chHHHHHHHHHhCCCEEEEEeCc
Confidence            98864322      23478889999999999998753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.52  E-value=0.0028  Score=47.41  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCccc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D  196 (300)
                      .++.+||=+|||. |.++..+++. ....++++|.++.-++.+++.    |.    ..++..+-++.     .+.++.+|
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga----~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA----THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC----SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC----eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            5788999999963 3455556553 445778899999888888764    22    23332222221     12346799


Q ss_pred             EEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          197 AVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       197 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +|+-.-.      ....++...++++|+|+++++..
T Consensus        99 ~vid~~G------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTG------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCC------cHHHHHHHHhcccCceEEEEEee
Confidence            9985321      23456888999999999999764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.0021  Score=53.27  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             CCCeEEEECCCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  187 (300)
                      .+..|||||.|.|.++..|++. ...+++++|+++...+..++...     .+++.++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeCchhh
Confidence            4678999999999999999864 33589999999999999887653     1478899998754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.46  E-value=0.0035  Score=49.68  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV  169 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~  169 (300)
                      .++..++.....++..|||.-||+|..+.+.. ..+-.++|+|+++..++.|++++.
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45566666666789999999999998887765 467899999999999999999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.42  E-value=0.0026  Score=50.33  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=57.6

Q ss_pred             CCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------CCCEEEEecccCc-CCCCCCcccE
Q 022248          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-------LTNFKFLQAVGEA-IPVSDASVDA  197 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~d~~~-~~~~~~~~D~  197 (300)
                      ..+|||.-||.|..+..++.. +.+|+++|-++.+....+..++.....       ..+++++.+|..+ +.-..+.||+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            348999999999999999864 679999999998877776655433211       1378999999755 3333567999


Q ss_pred             EEEcccc
Q 022248          198 VVGTLVL  204 (300)
Q Consensus       198 v~~~~~l  204 (300)
                      |+..=.+
T Consensus       168 IYlDPMF  174 (250)
T d2oyra1         168 VYLDPMF  174 (250)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9975444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.39  E-value=0.00066  Score=50.27  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccc
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  203 (300)
                      ++.+|+=||+|. |..+...+...+++|+.+|.+.+.+++.+....      .++++...+-+.+.-.-...|+||..-.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~------~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc------ccceeehhhhhhHHHhhccCcEEEEeee
Confidence            578999999995 455556666789999999999999988877653      2455555544333222246899997654


Q ss_pred             ccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          204 LCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       204 l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      +..-+-+.-+-+++.+.+|||.+++=
T Consensus       105 ipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         105 VPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             cCCcccCeeecHHHHhhcCCCcEEEE
Confidence            33322333345889999999996553

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.34  E-value=0.0031  Score=46.84  Aligned_cols=97  Identities=24%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             CCCCeEEEECCC--CChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCc
Q 022248          124 GKAKKVLEIGIG--TGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~  194 (300)
                      .++.+||=+||+  .|.++..+++. ....++++|.++.-++.+++.    |.   . .++..+-++.      ....+.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga---~-~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---D-YVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---S-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC---c-eeeccCCcCHHHHHHHHhhccc
Confidence            577899999973  55666666653 446999999999988888764    22   1 2222222211      012456


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      ||+|+....      -...++...+.++|||+++++....
T Consensus        98 ~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          98 VDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             EEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             chhhhcccc------cchHHHhhhhhcccCCEEEEecccc
Confidence            999996432      2334577889999999999986543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.28  E-value=0.054  Score=44.21  Aligned_cols=125  Identities=12%  Similarity=0.062  Sum_probs=75.6

Q ss_pred             CCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCC-CCcccEEEEccc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV  203 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~  203 (300)
                      .+.+|||+-||.|.+...|.+.....+.++|+++.+++..+.+..       +.  ..+|+.++... -..+|+++...-
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-------~~--~~~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-------EK--PEGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-------CC--CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-------CC--CcCchhcCchhhcceeeeeecccc
Confidence            568999999999999988865433345679999999998887762       11  34666665321 246899997543


Q ss_pred             ccCc---------ccH----HHHHHHHHHcccCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHHHHHHH
Q 022248          204 LCSV---------KDV----DMTLQEVRRVLKPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQTGNNIS  270 (300)
Q Consensus       204 l~~~---------~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (300)
                      ...+         .|.    -..+-++.+.++|.  +++.+.+..-...                 ......+.+.+.|+
T Consensus        81 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~-----------------~~~~~~~~i~~~l~  141 (327)
T d2c7pa1          81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASH-----------------DNGNTLEVVKNTMN  141 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTG-----------------GGGHHHHHHHHHHH
T ss_pred             cchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhh-----------------ccchhhHHhhhHHH
Confidence            3322         122    12234445556785  4555554431100                 00111247778888


Q ss_pred             hcCCcEE
Q 022248          271 EAGFSSV  277 (300)
Q Consensus       271 ~aGf~~v  277 (300)
                      +.||...
T Consensus       142 ~lGY~~~  148 (327)
T d2c7pa1         142 ELDYSFH  148 (327)
T ss_dssp             HTTBCCE
T ss_pred             hcCCcce
Confidence            9998854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.17  E-value=0.0085  Score=44.70  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-------CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  194 (300)
                      .++.+||=+|||. |.++..+++..+. .++.+|.++.-++.+++.    |.    ..++...-.+.       ....+.
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga----~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA----TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC----SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC----CcccCCccchhhhhhhHhhhhcCC
Confidence            5788999999986 7888888875554 799999999988777764    22    12222111110       012367


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEecc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHV  233 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  233 (300)
                      +|+|+-.-      .....+....+.+++| |.++++...
T Consensus        99 ~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          99 VDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             BSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             CcEEEEec------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence            89998532      2234578999999996 999998754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.017  Score=42.63  Aligned_cols=98  Identities=19%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC--------CCCC
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  193 (300)
                      .++.+||=+|+|. |.++..+++..+. +++++|.++.-++.|++.    |..    .++..+-+...        ....
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~----~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD----LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS----EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc----ccccccccccccccccccccCCC
Confidence            5778999999975 4455555665555 899999999998888764    321    12222111110        1135


Q ss_pred             cccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          194 SVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       194 ~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      .+|+|+..-.      -...++...+.+++||++++......
T Consensus        97 g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          97 KPEVTIECTG------AEASIQAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             CCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred             CceEEEeccC------CchhHHHHHHHhcCCCEEEEEecCCC
Confidence            6899886432      23457889999999999999875443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.0061  Score=44.96  Aligned_cols=96  Identities=21%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccE
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDA  197 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~  197 (300)
                      .++.+||=.|+|. |.+...+++..+.+++++|.++.-++.+++.    |..    .++...-++.     ....+.+|+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~----~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD----LVVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS----EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc----eecccccchhhhhcccccCCCceE
Confidence            5788999999875 4455555666778999999999988877653    321    1111111111     012244454


Q ss_pred             EEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          198 VVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       198 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      |++..      . ...+....+.|+|+|.+++.....
T Consensus        98 v~~~~------~-~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          98 VVTAV------S-KPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             EESSC------C-HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             EeecC------C-HHHHHHHHHHhccCCceEeccccc
Confidence            44321      1 345788999999999999976433

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.06  E-value=0.0045  Score=50.65  Aligned_cols=56  Identities=7%  Similarity=-0.039  Sum_probs=46.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHH
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV  169 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~  169 (300)
                      .++.+++.....++..|||.-||+|..+.+.. ..+-.++|+|+++..++.|++++.
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHH
Confidence            45566666666889999999999998887765 468899999999999999988764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.015  Score=47.95  Aligned_cols=123  Identities=19%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             CCeEEEECCCCChhHHHhHhC-CCce-EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC---CCCCcccEEEE
Q 022248          126 AKKVLEIGIGTGPNLKYYAAD-TDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~  200 (300)
                      +.+|+|+-||.|.+...+... ...+ +.++|+.+.+.+..+.+.       +...++.+|+.++.   ++...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-------~~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence            468999999999988777542 2223 679999999888877663       34566778877654   22246899997


Q ss_pred             cccccCc---------ccHH-HHHHHHHHcc-----cCCcEEEEEecccCCCchHHHHHHHhhhhhhhhhcCCcccchHH
Q 022248          201 TLVLCSV---------KDVD-MTLQEVRRVL-----KPGGIYLFVEHVAAKDGTFLKFWQNVVDPLQQIVSDGCHLTRQT  265 (300)
Q Consensus       201 ~~~l~~~---------~~~~-~~l~~~~~~L-----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (300)
                      ..-...+         .|.. .++.++.+++     ||.  +++.+++..-...                    ...+.+
T Consensus        75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~~--------------------~~~~~i  132 (343)
T d1g55a_          75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVS--------------------STRDLL  132 (343)
T ss_dssp             CCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGS--------------------HHHHHH
T ss_pred             ecccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcccc--------------------hhhHHH
Confidence            5543333         1222 2445555554     464  5666766532110                    011367


Q ss_pred             HHHHHhcCCcEE
Q 022248          266 GNNISEAGFSSV  277 (300)
Q Consensus       266 ~~~l~~aGf~~v  277 (300)
                      .+.|++.||.+.
T Consensus       133 ~~~l~~~GY~v~  144 (343)
T d1g55a_         133 IQTIENCGFQYQ  144 (343)
T ss_dssp             HHHHHHTTEEEE
T ss_pred             Hhhhhccccccc
Confidence            788889998853

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.89  E-value=0.026  Score=47.21  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHhhc-CCCCeEEEECCCCChhHHHhHhC--------CCceEEEEcCCHHHHHHHHHHHH
Q 022248          107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--------TDVQVLGVDPNRKMEKYAQTAAV  169 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------~~~~~~giD~s~~~~~~a~~~~~  169 (300)
                      +.+.++.++..+...+. ++..+|+|+|+|+|.++..+++.        ....++.+|.|+...+.-++.+.
T Consensus        60 Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          60 FGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            45556666666666654 34568999999999998877652        34579999999987766666544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.76  E-value=0.0091  Score=47.79  Aligned_cols=58  Identities=16%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhcCCCCeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHc
Q 022248          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~  171 (300)
                      .++..++.....++..|||.-||+|..+.+... .+-+++|+|+++...+.|++++...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            345556666667899999999999988777654 5779999999999999999998754

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.38  E-value=0.22  Score=40.06  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             CeEEEECCCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC-CCCcccEEEEccccc
Q 022248          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLC  205 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~l~  205 (300)
                      .+|||+-||.|.+...+.....-.+.++|+++.+.+..+.+.        .-.++.+|+.++.. .-..+|+++...-..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~--------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC--------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence            379999999999888776533334569999999888777663        23457788877642 124689999754433


Q ss_pred             Cc---------ccHH-HH---HHHHHHcccCCcEEEEEeccc
Q 022248          206 SV---------KDVD-MT---LQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       206 ~~---------~~~~-~~---l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      .+         .|.. .+   +-++...++|.  +++.+.+.
T Consensus        73 ~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~  112 (324)
T d1dcta_          73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK  112 (324)
T ss_dssp             TTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred             ccccccccccccccccchHHHHHHHHHhhCCc--eeeccccc
Confidence            33         2333 23   33455556885  55566554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.02  Score=42.48  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCC--CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||=.|+|  .|.++.++++..+.+++++|.+++-.+.+++.    |..    .++...-+++.      -....+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~----~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW----QVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe----EEEECCCCCHHHHHHHHhCCCCe
Confidence            567899888655  57788888887888999999999988887754    321    22221112110      134679


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+..-.-.       .+....+.|+++|++++...
T Consensus        99 d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          99 RVVYDSVGRD-------TWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             EEEEECSCGG-------GHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEeCccHH-------HHHHHHHHHhcCCeeeeccc
Confidence            9988654322       35788999999999888654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.11  E-value=0.014  Score=43.49  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCc--CCCCCCcccEEE
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSDASVDAVV  199 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~  199 (300)
                      .++.+||=-|.  |.|.++.++++..+.+++++.-+++-.+.+++.    |..  .+.-...+..+  .....+.+|+|+
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~gvD~vi  103 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAK--EVLAREDVMAERIRPLDKQRWAAAV  103 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCS--EEEECC---------CCSCCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccc--eeeecchhHHHHHHHhhccCcCEEE
Confidence            45778888875  566888899988899999999888877777653    321  11111111111  123456899988


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      -.-.-.       .+....+.|+|||+++.+.....
T Consensus       104 d~vgg~-------~~~~~l~~l~~~Griv~~G~~~g  132 (176)
T d1xa0a2         104 DPVGGR-------TLATVLSRMRYGGAVAVSGLTGG  132 (176)
T ss_dssp             ECSTTT-------THHHHHHTEEEEEEEEECSCCSS
T ss_pred             EcCCch-------hHHHHHHHhCCCceEEEeecccC
Confidence            654322       26889999999999999876543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.83  E-value=0.014  Score=43.62  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             CCCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC------CCCCcc
Q 022248          124 GKAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~  195 (300)
                      .++.+||=.|  .|.|.++.++++..+.++++++-+++-.+.+++    .|..    .++...-+++.      .....|
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~----~vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE----YVGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS----EEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc----ccccCCccCHHHHHHHHhCCCCE
Confidence            5678898876  356778888888778899999888876666553    3432    22221111110      234679


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+..-.       ...++.+.+.|+++|+++....
T Consensus        96 d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          96 DVVLNSLA-------GEAIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             EEEEeccc-------chHHHHHHHHhcCCCEEEEEcc
Confidence            99997543       1246788899999999999753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.66  E-value=0.077  Score=39.22  Aligned_cols=98  Identities=10%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             CCCCeEEEECCCC-ChhHHHhHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcC------CCCCCc
Q 022248          124 GKAKKVLEIGIGT-GPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~------~~~~~~  194 (300)
                      +++..||=+|||. |.++..+++..+ .+|+++|.+++-++.|++.-    .    ..++. .+....      ......
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G----A----~~~in~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG----A----TECISPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT----C----SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC----C----cEEECccccchHHHHHHHHhcccc
Confidence            5788999999974 445555565444 68999999999999988762    1    12221 111110      012356


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                      +|+++-..     .........+..+++++|.++++....
T Consensus       100 ~d~vi~~~-----g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         100 VGYTFEVI-----GHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             CCEEEECS-----CCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             ceEEEEeC-----CchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            89888543     222223333444556669999987543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.64  E-value=0.11  Score=38.24  Aligned_cols=97  Identities=12%  Similarity=0.064  Sum_probs=59.2

Q ss_pred             CCCCeEEEECCCCC-hhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-------CCCCCc
Q 022248          124 GKAKKVLEIGIGTG-PNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  194 (300)
                      +++.+||=+|||.. .++..+++. ...+++++|.++.-++.+++.    |.    ..++...-.+.       ....+.
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga----~~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA----TECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC----cEEEcCCCchhHHHHHHHHhcCCC
Confidence            67889999999743 444555553 345899999999999888764    22    22332111111       112356


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcc-cCCcEEEEEeccc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVL-KPGGIYLFVEHVA  234 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~  234 (300)
                      +|.|+-.-.     . ...+......+ +++|.++++....
T Consensus        98 ~d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2          98 VDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             CcEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEEec
Confidence            898885432     2 23445556555 5569999977543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.49  E-value=0.017  Score=43.00  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=60.7

Q ss_pred             CCCeEEEECCCC-ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecc-------------cCcCC-
Q 022248          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-------------GEAIP-  189 (300)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d-------------~~~~~-  189 (300)
                      ++.+||=||+|. |..+...+...++.|+++|.++..+++.+....         .|+..+             +..+. 
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~---------~~i~~~~~~~~~~~~~~gyA~~~s~   98 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG---------KFITVDDEAMKTAETAGGYAKEMGE   98 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC---------EECCC--------------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc---------ceEEEeccccccccccccchhhcCH
Confidence            577999999996 445555566789999999999998888776521         121111             00000 


Q ss_pred             -C----------CCCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          190 -V----------SDASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       190 -~----------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                       +          .-...|+||..-.+..-.-+.-+-+++.+.+|||.+++=
T Consensus        99 ~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1          99 EFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             ---CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence             0          013589999765444333333345889999999996553

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.08  E-value=0.05  Score=40.48  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             CCCCeEEEECCC--CChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC------CCCCCcc
Q 022248          124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV  195 (300)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~  195 (300)
                      .++.+||=.|++  .|..+.++++..++++++++-+++-.+.+++.    +..    ..+..+-+..      ......+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~----~vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD----AAFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS----EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh----hhcccccccHHHHHHHHhhcCCC
Confidence            578899977764  45777888887889999999988876666553    321    2222221111      1234679


Q ss_pred             cEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          196 DAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       196 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      |+|+-.-.       .+.+++..+.|+|+|.++++..
T Consensus       100 d~v~D~vG-------~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         100 DCYFDNVG-------GEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEEEESSC-------HHHHHHHGGGEEEEEEEEECCC
T ss_pred             ceeEEecC-------chhhhhhhhhccCCCeEEeecc
Confidence            99986321       2357899999999999999763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.88  E-value=0.015  Score=43.11  Aligned_cols=94  Identities=17%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEc
Q 022248          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (300)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  201 (300)
                      .++.+||=.|.  |.|.++..+++..+.++++++.++...+.+++    .|.+  .+ +-..+....-.....+|+|+-.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~--~~-i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--EA-ATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--EE-EEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc--ee-eehhhhhhhhhccccccccccc
Confidence            57888998874  44678888888788899999998887776654    3432  22 1111111000123569999863


Q ss_pred             ccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          202 LVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       202 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      ..    +    .+....+.|+|+|+++++..
T Consensus        99 ~G----~----~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2          99 RG----K----EVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             SC----T----THHHHHTTEEEEEEEEEC--
T ss_pred             cc----h----hHHHHHHHHhcCCcEEEEeC
Confidence            22    1    24678899999999998653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.32  Score=38.04  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      +++++|=-|++.| .+..+++   +.+.+|+++|.++..++.+.+.++..+.. .++.++.+|+.+..          -.
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP-GTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            6788999998876 3444443   36789999999999999998888877653 47888899986532          11


Q ss_pred             CCcccEEEEccccc
Q 022248          192 DASVDAVVGTLVLC  205 (300)
Q Consensus       192 ~~~~D~v~~~~~l~  205 (300)
                      -+..|+++.+....
T Consensus        87 ~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          87 HSGVDICINNAGLA  100 (257)
T ss_dssp             HCCCSEEEECCCCC
T ss_pred             cCCCCEEEeccccc
Confidence            26799999765443

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=1.7  Score=35.11  Aligned_cols=152  Identities=10%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             CCCeEEEECCCCChhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHc-------C------------CCCCCEEEEecc
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-------G------------LPLTNFKFLQAV  184 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~-------~------------~~~~~~~~~~~d  184 (300)
                      +...|+-+|||.-.....+.. .++..++=||..+ +++.=++.++..       +            +..++...+.+|
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D  174 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  174 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence            456899999999887777754 4556677777644 333333333221       0            112467788888


Q ss_pred             cCcCC---------CCCCcccEEEEcccccCccc--HHHHHHHHHHcccCCcEEEEEeccc--CCCchHHHHHHHhhhhh
Q 022248          185 GEAIP---------VSDASVDAVVGTLVLCSVKD--VDMTLQEVRRVLKPGGIYLFVEHVA--AKDGTFLKFWQNVVDPL  251 (300)
Q Consensus       185 ~~~~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~~~~~  251 (300)
                      +.++.         +.....-++++=.++.+++.  ..++++.+.+.. |+|.+++.++..  .++..+...+...+...
T Consensus       175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~~p~D~FG~~M~~nl~~~  253 (328)
T d1rjda_         175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES  253 (328)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred             CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCCCCCChHHHHHHHHHHHh
Confidence            86642         22334447788888888853  356777777766 567778878653  23344555554433221


Q ss_pred             hhh---hcCCcccchHHHHHHHhcCCcEEEEe
Q 022248          252 QQI---VSDGCHLTRQTGNNISEAGFSSVELG  280 (300)
Q Consensus       252 ~~~---~~~~~~~~~~~~~~l~~aGf~~v~~~  280 (300)
                      ...   .-..+.+.+...+.+  .|+..+...
T Consensus       254 r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~  283 (328)
T d1rjda_         254 RNLEMPTLMTYNSKEKYASRW--SAAPNVIVN  283 (328)
T ss_dssp             HCCCCTTTTTTCSHHHHHGGG--TTSSEEEEE
T ss_pred             cCCCCCccccCCCHHHHHHHH--hcCCccchh
Confidence            110   111234444444444  477766554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.15  E-value=0.24  Score=36.13  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCCCeEEEECCCCChhH-HHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-------CCCCc
Q 022248          124 GKAKKVLEIGIGTGPNL-KYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~-~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~  194 (300)
                      +++.+||=+|+|.+... ..+++ .....++++|.+++-++.+++.    |.    ..++...-+...       .....
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GA----d~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA----TDFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC----CEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CC----cEEEcCCCcchhHHHHHHhhccCC
Confidence            67889999999875443 33344 4566899999999988877653    32    223322111110       12356


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEeccc
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEHVA  234 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~  234 (300)
                      +|+|+-.-.-      ...+......+++| |.+++.....
T Consensus        99 ~d~vid~~G~------~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          99 VDFSLECVGN------VGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             cceeeeecCC------HHHHHHHHHHhhCCCcceeEEEecC
Confidence            8999854322      22345666666555 6555554433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.10  E-value=0.18  Score=36.86  Aligned_cols=94  Identities=15%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             CCCCeEEEECCC-CChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-------CCCCCc
Q 022248          124 GKAKKVLEIGIG-TGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  194 (300)
                      +++.+||=.||| .|.++.++++. ....++++|.++.-++.+++.    |.    -.++...-...       ....+.
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga----~~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA----TECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC----cEEEeCCchhhHHHHHHHHHcCCC
Confidence            578899999886 34555666654 346899999999888877764    22    12222211111       012357


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +|+|+-.-.-      ...++....++++||.++++.
T Consensus        99 ~D~vid~~G~------~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          99 VDYSFECIGN------VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEeeecCCC------HHHHHHHHHhhcCCceeEEEE
Confidence            9999964322      235688889999988777654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.98  E-value=0.26  Score=35.70  Aligned_cols=91  Identities=19%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             eEEEECCCC-C-hhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEcccc
Q 022248          128 KVLEIGIGT-G-PNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (300)
Q Consensus       128 ~vLDiGcG~-G-~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l  204 (300)
                      +|+=||||. | .++..|.+. ...+++|+|.++..++.+++.    +    .+.....+....  .+...|+|+..-- 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~----~~~~~~~~~~~~--~~~~~dlIila~p-   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G----IIDEGTTSIAKV--EDFSPDFVMLSSP-   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T----SCSEEESCGGGG--GGTCCSEEEECSC-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----h----cchhhhhhhhhh--hccccccccccCC-
Confidence            577899874 2 234444432 446899999999999888764    1    121122222221  2245789886432 


Q ss_pred             cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          205 CSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       205 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                        ......++.++...++++..++-+.
T Consensus        72 --~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          72 --VRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             --HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --chhhhhhhhhhhccccccccccccc
Confidence              2245667889999999886554433

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=92.88  E-value=0.036  Score=43.58  Aligned_cols=107  Identities=14%  Similarity=0.076  Sum_probs=71.6

Q ss_pred             CCCCeEEEECCCCChhHHHhHhC-----------------------------------------CCceEEEEcCCHHHHH
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAAD-----------------------------------------TDVQVLGVDPNRKMEK  162 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-----------------------------------------~~~~~~giD~s~~~~~  162 (300)
                      ..+..++|--||+|.+.+..+--                                         ....++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            34567999999999887765420                                         0134678999999999


Q ss_pred             HHH---HHHHHcCCCCCCEEEEecccCcCC-----CCCCcccEEEEcc----ccc---Cc--ccHHHHHHHHHHcccCCc
Q 022248          163 YAQ---TAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDAVVGTL----VLC---SV--KDVDMTLQEVRRVLKPGG  225 (300)
Q Consensus       163 ~a~---~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~----~l~---~~--~~~~~~l~~~~~~LkpgG  225 (300)
                      .|+   ++++..++. ..+.+...|+.+..     .+....++|+++=    =+.   ..  .....+...+.+++....
T Consensus       129 ~A~~~r~n~~~Agl~-~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s  207 (249)
T d1o9ga_         129 AARRLRERLTAEGGA-LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  207 (249)
T ss_dssp             HHHHHHHHHHHTTSS-CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHcCCC-ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence            884   578888886 68899999875532     1245678898852    111   11  123456677888886666


Q ss_pred             EEEEEe
Q 022248          226 IYLFVE  231 (300)
Q Consensus       226 ~l~~~~  231 (300)
                      .+++..
T Consensus       208 ~~~it~  213 (249)
T d1o9ga_         208 VIAVTD  213 (249)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            666654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.75  E-value=0.31  Score=35.10  Aligned_cols=87  Identities=15%  Similarity=0.091  Sum_probs=53.1

Q ss_pred             eEEEECCCC--ChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCCCCCcccEEEEccccc
Q 022248          128 KVLEIGIGT--GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (300)
Q Consensus       128 ~vLDiGcG~--G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  205 (300)
                      +|.=||+|.  +.++..|. ..+.+|+++|.+++.++.+++.    +.    +.....+.+.+    ...|+|+..-   
T Consensus         2 kI~iIG~G~mG~~lA~~l~-~~g~~V~~~d~~~~~~~~a~~~----~~----~~~~~~~~~~~----~~~DiIilav---   65 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVER----QL----VDEAGQDLSLL----QTAKIIFLCT---   65 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHT----TS----CSEEESCGGGG----TTCSEEEECS---
T ss_pred             EEEEEeecHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHh----hc----cceeeeecccc----cccccccccC---
Confidence            566677762  23344443 3677999999999887776553    21    11122232322    4678888632   


Q ss_pred             CcccHHHHHHHHHHcccCCcEEEEE
Q 022248          206 SVKDVDMTLQEVRRVLKPGGIYLFV  230 (300)
Q Consensus       206 ~~~~~~~~l~~~~~~LkpgG~l~~~  230 (300)
                      .....+.+++++...|+++-.++-.
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             cHhhhhhhhhhhhhhcccccceeec
Confidence            1234567889999988888866543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.47  E-value=0.093  Score=38.45  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             CCCeEEEEC--CCCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEeccc--Cc-CCCCCCcccEEE
Q 022248          125 KAKKVLEIG--IGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG--EA-IPVSDASVDAVV  199 (300)
Q Consensus       125 ~~~~vLDiG--cG~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~~-~~~~~~~~D~v~  199 (300)
                      ++.+||=-|  .|-|.++.+|++..+++++++.-+++-.+.+++.    +.+  .+ +...+.  +. .....+.+|+|+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad--~v-i~~~~~~~~~~~~~~~~gvd~vi   95 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS--EV-ISREDVYDGTLKALSKQQWQGAV   95 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS--EE-EEHHHHCSSCCCSSCCCCEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc--ce-EeccchhchhhhcccCCCceEEE
Confidence            455677666  3667888999988889999999988877776654    321  22 211111  11 123346799988


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEecccC
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVAA  235 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  235 (300)
                      -.-.       ...+.+..+.|+|+|+++++.....
T Consensus        96 d~vg-------g~~~~~~~~~l~~~G~iv~~G~~~g  124 (167)
T d1tt7a2          96 DPVG-------GKQLASLLSKIQYGGSVAVSGLTGG  124 (167)
T ss_dssp             ESCC-------THHHHHHHTTEEEEEEEEECCCSSC
T ss_pred             ecCc-------HHHHHHHHHHhccCceEEEeeccCC
Confidence            5421       1246889999999999999875543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.27  E-value=0.43  Score=32.95  Aligned_cols=87  Identities=11%  Similarity=0.098  Sum_probs=54.7

Q ss_pred             eEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEE
Q 022248          128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (300)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~  200 (300)
                      +|+=+|+  |.++..+++   ..+.+++.+|.+++.++.++...        .+.++.+|..+..    ..-...|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~--------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh--------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            4555554  777777765   46789999999999888776542        4567888886532    12246788887


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEE
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIY  227 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l  227 (300)
                      ...-   +..........+.+.+.-.+
T Consensus        72 ~t~~---d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          72 VTGK---EEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             CCSC---HHHHHHHHHHHHHTTCCCEE
T ss_pred             cCCc---HHHHHHHHHHHHHcCCceEE
Confidence            4211   11222345556667777443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.13  Score=38.08  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             CCCeEEEECC--CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccC--cCCCCCCcccEEEE
Q 022248          125 KAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVG  200 (300)
Q Consensus       125 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~  200 (300)
                      ++.+||=.|.  |.|.++.++++..+.+++++.-+++..+.+++.    |.    -.++.-+-.  .-.+....+|.|+-
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga----d~vi~~~~~~~~~~l~~~~~~~vvD  102 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA----SRVLPRDEFAESRPLEKQVWAGAID  102 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE----EEEEEGGGSSSCCSSCCCCEEEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc----ccccccccHHHHHHHHhhcCCeeEE
Confidence            3456775543  466788888888899999999999887777653    22    122222211  12234566788753


Q ss_pred             cccccCcccHHHHHHHHHHcccCCcEEEEEeccc
Q 022248          201 TLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEHVA  234 (300)
Q Consensus       201 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  234 (300)
                           .+-  ...+.+..+.|+++|+++.+....
T Consensus       103 -----~Vg--g~~~~~~l~~l~~~Griv~~G~~~  129 (177)
T d1o89a2         103 -----TVG--DKVLAKVLAQMNYGGCVAACGLAG  129 (177)
T ss_dssp             -----SSC--HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             -----Ecc--hHHHHHHHHHhccccceEeecccC
Confidence                 221  235789999999999999986543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.58  E-value=0.58  Score=32.20  Aligned_cols=86  Identities=14%  Similarity=-0.066  Sum_probs=50.6

Q ss_pred             CCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCCC----CCCcccEEEEcccccC
Q 022248          134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVVGTLVLCS  206 (300)
Q Consensus       134 cG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~~~~l~~  206 (300)
                      ||.|.++..+++   ..+.+++.+|.+++.++.++..         ....+.+|..+...    .-...|.|++...-  
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~---------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~--   74 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY---------ATHAVIANATEENELLSLGIRNFEYVIVAIGA--   74 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT---------CSEEEECCTTCTTHHHHHTGGGCSEEEECCCS--
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh---------CCcceeeecccchhhhccCCccccEEEEEcCc--
Confidence            355677777765   4678999999999988877532         23456677755431    12357777654311  


Q ss_pred             cccHHHHHHHHHHcccCCcEEEEEe
Q 022248          207 VKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       207 ~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                       .+....+-.+.+.+.|...++...
T Consensus        75 -~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          75 -NIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             -CHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             -hHHhHHHHHHHHHHcCCCcEEeec
Confidence             112233344444455666666543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.83  Score=35.82  Aligned_cols=104  Identities=14%  Similarity=0.023  Sum_probs=70.4

Q ss_pred             CCeEEEECCCCChhHHHh----HhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          126 AKKVLEIGIGTGPNLKYY----AADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l----~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      +++|.=|-.|++.++..+    ++..+..|+.++.+++.++.+.+.++..+   .++.++.+|+.+..          -.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence            466755534444444444    43357899999999999999988888776   36788999986642          11


Q ss_pred             CCcccEEEEcccccCcc--------cH-----------HHHHHHHHHcccCCcEEEEEec
Q 022248          192 DASVDAVVGTLVLCSVK--------DV-----------DMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      -+..|+++.+..+....        +.           ..+.+.+...|+++|.++.+..
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            26799999876554221        11           1346777888899999888653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.66  E-value=0.071  Score=39.86  Aligned_cols=100  Identities=12%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             CCCCeEEEECC---CCChhHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE-ecccCcCC--------CC
Q 022248          124 GKAKKVLEIGI---GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIP--------VS  191 (300)
Q Consensus       124 ~~~~~vLDiGc---G~G~~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~  191 (300)
                      .++.+||=+.+   |.|..+..+++..+.+++++--++...+...+.+++.|..  .+-.. ..+..+..        ..
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad--~vi~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT--QVITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS--EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc--EEEeccccchhHHHHHHHHHHhhc
Confidence            45667777633   3467778888877889888754544455555555555643  22111 11211110        11


Q ss_pred             CCcccEEEEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          192 DASVDAVVGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      .+.+|+|+-.     +.  ...+....+.|+|+|+++.+..
T Consensus       105 g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         105 GGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             TCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECCC
T ss_pred             cCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEECC
Confidence            3568888843     11  2235778899999999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.30  E-value=1.6  Score=33.58  Aligned_cols=78  Identities=17%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V  190 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~  190 (300)
                      .+++.+|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.++..+   .++.++.+|+.+..          -
T Consensus         8 lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           8 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36777888887665 5555544   467899999999999999888887665   36888899986532          1


Q ss_pred             CCCcccEEEEccccc
Q 022248          191 SDASVDAVVGTLVLC  205 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~  205 (300)
                      .-+..|+++.+....
T Consensus        84 ~~g~iDilvnnag~~   98 (251)
T d2c07a1          84 EHKNVDILVNNAGIT   98 (251)
T ss_dssp             HCSCCCEEEECCCCC
T ss_pred             hcCCceeeeeccccc
Confidence            226899999765443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.77  E-value=0.093  Score=41.48  Aligned_cols=53  Identities=21%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             EEEecccCcC--CCCCCcccEEEEcc----cc-------cCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          179 KFLQAVGEAI--PVSDASVDAVVGTL----VL-------CSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       179 ~~~~~d~~~~--~~~~~~~D~v~~~~----~l-------~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .|+.+|..++  .++++++|+|+..=    ..       .++......+.++.|+|||+|.+++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            4667777553  46789999999731    11       112234667899999999999999865

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.09  E-value=1.4  Score=31.83  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             CCCCeEEEECCCCC-hhHHHhHh-CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEe-cccCcC------CCCCCc
Q 022248          124 GKAKKVLEIGIGTG-PNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI------PVSDAS  194 (300)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~-~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~d~~~~------~~~~~~  194 (300)
                      +++.+||=+|+|.+ .+...+++ .....|+++|.++.-.+.+++.    +.    ..++. .+.++.      ....+.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga----~~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA----TECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC----SEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC----eeEEecCCchhHHHHHHHHHhcCC
Confidence            67889999999644 34444444 3457999999999988887664    22    12221 121111      123467


Q ss_pred             ccEEEEcccccCcccHHHHHHHHHHcccCC-cEEEEEec
Q 022248          195 VDAVVGTLVLCSVKDVDMTLQEVRRVLKPG-GIYLFVEH  232 (300)
Q Consensus       195 ~D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  232 (300)
                      +|+|+-.....      ..++.....++++ |.+++...
T Consensus        99 ~D~vid~~G~~------~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          99 VDFSFEVIGRL------DTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             BSEEEECSCCH------HHHHHHHHHBCTTTCEEEECSC
T ss_pred             CCEEEecCCch------hHHHHHHHHHhcCCcceEEecC
Confidence            99999654332      2356667777775 56666543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.86  E-value=0.69  Score=38.59  Aligned_cols=50  Identities=16%  Similarity=0.146  Sum_probs=40.9

Q ss_pred             CCCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCC
Q 022248          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGL  173 (300)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~  173 (300)
                      .++..++|||+-.|.++..++.   ....+|+++|+++...+..+++++....
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            4567999999999988877654   2346899999999999999998876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=1.8  Score=33.17  Aligned_cols=79  Identities=14%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             CCCeEEEECCCCCh---hHHHhHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      .++.+|=-|++.|.   ++..+++ .+.+|+.+|.+++.++...+.+...+   .++.++.+|+.+..          -.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~-~G~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAK-LKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            56778877887772   3344443 67899999999999999988887765   47888999986642          12


Q ss_pred             CCcccEEEEcccccCc
Q 022248          192 DASVDAVVGTLVLCSV  207 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~  207 (300)
                      -+..|+++.+......
T Consensus        82 ~g~idilinnag~~~~   97 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYT   97 (244)
T ss_dssp             TCCCSEEEECCCCCCC
T ss_pred             cCCCceeEeecccccc
Confidence            3679999976655433

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.37  E-value=0.53  Score=34.70  Aligned_cols=92  Identities=9%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             CeEEEEC--CCCChhHHHhHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcC-----CCCCCcccEE
Q 022248          127 KKVLEIG--IGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVDAV  198 (300)
Q Consensus       127 ~~vLDiG--cG~G~~~~~l~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v  198 (300)
                      .+||=.|  .|.|.++.++++..+. .+++++.+++....+.+.   .+..    .++...-+.+     ...+..+|+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad----~vi~~~~~~~~~~~~~~~~~GvDvv  104 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD----AAVNYKTGNVAEQLREACPGGVDVY  104 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS----EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce----EEeeccchhHHHHHHHHhccCceEE
Confidence            6788766  5788999999986565 577777776554443322   2321    2222221111     0123569999


Q ss_pred             EEcccccCcccHHHHHHHHHHcccCCcEEEEEec
Q 022248          199 VGTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVEH  232 (300)
Q Consensus       199 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  232 (300)
                      +-.-.       ...++...+.|+|+|+++.+..
T Consensus       105 ~D~vG-------g~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         105 FDNVG-------GDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EESSC-------HHHHHHHHTTEEEEEEEEEC--
T ss_pred             EecCC-------chhHHHHhhhccccccEEEecc
Confidence            85332       2357889999999999998653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.54  E-value=0.25  Score=38.26  Aligned_cols=52  Identities=17%  Similarity=0.014  Sum_probs=33.8

Q ss_pred             EEecccCcC--CCCCCcccEEEEccc----cc---Cc-------ccHHHHHHHHHHcccCCcEEEEEe
Q 022248          180 FLQAVGEAI--PVSDASVDAVVGTLV----LC---SV-------KDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       180 ~~~~d~~~~--~~~~~~~D~v~~~~~----l~---~~-------~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      ++.+|..++  .++++++|+|+..=-    -.   ..       ......++++.|+|+|||.+++..
T Consensus         7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            566666442  356788999887310    00   11       113457899999999999988754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=1.2  Score=34.48  Aligned_cols=84  Identities=18%  Similarity=0.037  Sum_probs=57.1

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      .++++|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.+.+..- ..++.++.+|+.+..          -.
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            4567777787665 4444443   3678999999999988888777654321 147888899986532          01


Q ss_pred             CCcccEEEEcccccCcccH
Q 022248          192 DASVDAVVGTLVLCSVKDV  210 (300)
Q Consensus       192 ~~~~D~v~~~~~l~~~~~~  210 (300)
                      -+..|+++.+.......+.
T Consensus        80 ~G~iDilVnnAg~~~~~~~   98 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEKNW   98 (254)
T ss_dssp             HSCCCEEEECCCCCCSSSH
T ss_pred             cCCcCeecccccccccccc
Confidence            2579999987766655443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.85  E-value=2.1  Score=33.12  Aligned_cols=77  Identities=16%  Similarity=0.006  Sum_probs=55.6

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC-----------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------V  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----------~  190 (300)
                      +++++|=.|+..| ++.++++   ..+.+|+.+|.++..++.+.+.+...+   .++.++.+|+.+..           .
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            6788999988765 4444433   367799999999999998888887776   36788889985532           1


Q ss_pred             CCCcccEEEEccccc
Q 022248          191 SDASVDAVVGTLVLC  205 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~  205 (300)
                      .++..|+++.+....
T Consensus        81 ~~g~idilinnag~~   95 (258)
T d1ae1a_          81 FDGKLNILVNNAGVV   95 (258)
T ss_dssp             TTSCCCEEEECCCCC
T ss_pred             hCCCcEEEecccccc
Confidence            236788988755444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.04  E-value=3.5  Score=31.89  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCC-HHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN-RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~  190 (300)
                      +++++|=-|++.| .+.++++   ..+.+|+.+|.+ ++.++...+.++..+   .++.++.+|+.+..          -
T Consensus        17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC---CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            5678888887666 3444443   367899999876 566777777777665   36888888886531          1


Q ss_pred             CCCcccEEEEcccccCcc--------c-----------HHHHHHHHHHcccCCcEEEEEe
Q 022248          191 SDASVDAVVGTLVLCSVK--------D-----------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .-+..|+++.+.......        +           ...+.+.+...|+.+|..+++.
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            125789998765443321        1           1234677788888888877764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.56  E-value=2.3  Score=28.74  Aligned_cols=86  Identities=9%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             CCCChhHHHhHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEEEcccccCcc
Q 022248          134 IGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGTLVLCSVK  208 (300)
Q Consensus       134 cG~G~~~~~l~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~  208 (300)
                      ||.|..+..+++. .+..++.+|.++...+.++..         .+.++.+|..+..    ..-...+.+++..-   -+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~---------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~---~d   73 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS---------GANFVHGDPTRVSDLEKANVRGARAVIVNLE---SD   73 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT---------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS---SH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc---------CccccccccCCHHHHHHhhhhcCcEEEEecc---ch
Confidence            5667788888873 345688999999887766532         5678889986531    22245777776431   01


Q ss_pred             cHHHHHHHHHHcccCCcEEEEEe
Q 022248          209 DVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       209 ~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .....+....+.+.|...++...
T Consensus        74 ~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          74 SETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             hhhHHHHHHHHHHCCCceEEEEE
Confidence            12233555667788888777755

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.10  E-value=4.5  Score=28.07  Aligned_cols=95  Identities=4%  Similarity=-0.095  Sum_probs=55.3

Q ss_pred             CeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----CCCCcccEEE
Q 022248          127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV  199 (300)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~  199 (300)
                      .+|+=+|+  |.++..+++   ..+..++.+|.+++......+....     ..+.++.+|..+..    ..-+..|.|+
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEEE
Confidence            35666665  556666654   3577899999988654433333322     35788999986532    1224678888


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEEEe
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      +..--   ......+....+-+.|...+++..
T Consensus        77 ~~~~~---d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          77 ALSDN---DADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             ECSSC---HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             Ecccc---HHHHHHHHHHHHHhCCCCceEEEE
Confidence            64311   111223444556677887777654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.94  E-value=1.3  Score=34.63  Aligned_cols=78  Identities=13%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      +++++|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.+...+....++.++.+|+.+..          -.
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5677888887665 4444443   36789999999999999999888877654457889999986532          11


Q ss_pred             CCcccEEEEccc
Q 022248          192 DASVDAVVGTLV  203 (300)
Q Consensus       192 ~~~~D~v~~~~~  203 (300)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            257899997643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.92  E-value=3.9  Score=31.30  Aligned_cols=103  Identities=13%  Similarity=0.039  Sum_probs=65.5

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHH-HcCCCCCCEEEEecccCcCC----------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIP----------V  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~~~----------~  190 (300)
                      +++++|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.+. ..+   .++.++.+|+.+..          -
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            6778888888766 3444433   367899999999988877766553 334   36788888986531          0


Q ss_pred             CCCcccEEEEcccccCcc--------cH-----------HHHHHHHHHccc--CCcEEEEEe
Q 022248          191 SDASVDAVVGTLVLCSVK--------DV-----------DMTLQEVRRVLK--PGGIYLFVE  231 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~--------~~-----------~~~l~~~~~~Lk--pgG~l~~~~  231 (300)
                      .-+..|+++.+.......        +.           -.+.+.+...++  .+|.++...
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence            125799999765443221        11           124566666664  457777764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.54  E-value=1.5  Score=34.21  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      +++++|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.+...+....++.++.+|+.+..          -.
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5677887787766 4444443   36789999999999999998888887655457899999986532          01


Q ss_pred             CCcccEEEEccc
Q 022248          192 DASVDAVVGTLV  203 (300)
Q Consensus       192 ~~~~D~v~~~~~  203 (300)
                      -+..|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            257899997643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=81.88  E-value=6.7  Score=27.73  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=53.5

Q ss_pred             CeEEEECCCCChhH--HHhHhCCCceEEEEcCCHHHHHHHHHHHHHc-CCCCCCEEE----EecccCcCCCCCCcccEEE
Q 022248          127 KKVLEIGIGTGPNL--KYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKF----LQAVGEAIPVSDASVDAVV  199 (300)
Q Consensus       127 ~~vLDiGcG~G~~~--~~l~~~~~~~~~giD~s~~~~~~a~~~~~~~-~~~~~~~~~----~~~d~~~~~~~~~~~D~v~  199 (300)
                      ++|-=||+|....+  ..|+ ..+.+|+.+|.++.-++..++.-... .........    ...|..+   .-...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLA-LKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---HhcCCCEEE
Confidence            46777888754322  2223 45789999999998777765542100 000000000    0111111   014588988


Q ss_pred             EcccccCcccHHHHHHHHHHcccCCcEEEE
Q 022248          200 GTLVLCSVKDVDMTLQEVRRVLKPGGIYLF  229 (300)
Q Consensus       200 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  229 (300)
                      +.-   .......+++++...|+++-.+++
T Consensus        78 i~v---~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVV---PAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECS---CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEE---chhHHHHHHHHhhhccCCCCEEEE
Confidence            742   223557789999999999876554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.67  E-value=3.6  Score=31.58  Aligned_cols=103  Identities=16%  Similarity=0.026  Sum_probs=66.3

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEE-EcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------C
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLG-VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V  190 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~g-iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~  190 (300)
                      .++++|=-|.+ +..+.++++   ..+.+|+. .+-++..++.+.+.+...+.   ++.++.+|+.+..          .
T Consensus         5 ~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~---~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           5 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA---QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC---CceEecCCCCCHHHHHHHHHHHHH
Confidence            57788866654 445555544   35667775 46777778888888877763   7888999986531          1


Q ss_pred             CCCcccEEEEcccccCccc-------------------HHHHHHHHHHcccCCcEEEEEe
Q 022248          191 SDASVDAVVGTLVLCSVKD-------------------VDMTLQEVRRVLKPGGIYLFVE  231 (300)
Q Consensus       191 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~  231 (300)
                      .-+..|+++.+....+..+                   .-...+.+...++.+|.+++..
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            2357999997665543321                   1134567777777777776654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.58  E-value=2  Score=33.29  Aligned_cols=78  Identities=15%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             CCCeEEEECCCCChhHHHhHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEecccCcCC----------CC
Q 022248          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (300)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------~~  191 (300)
                      +++.+|=-|++.| .+..+++   ..+.+|+.+|.+++.++.+.+.+...+....++.++.+|+.+..          -.
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5667777777655 4444443   36789999999999999998888877655457899999986531          01


Q ss_pred             CCcccEEEEccc
Q 022248          192 DASVDAVVGTLV  203 (300)
Q Consensus       192 ~~~~D~v~~~~~  203 (300)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257899987643