Citrus Sinensis ID: 022265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SE95 | 298 | FH protein interacting pr | yes | no | 0.99 | 0.996 | 0.780 | 1e-134 | |
| Q7L273 | 389 | BTB/POZ domain-containing | yes | no | 0.936 | 0.722 | 0.345 | 3e-35 | |
| Q9H3F6 | 313 | BTB/POZ domain-containing | no | no | 0.34 | 0.325 | 0.542 | 1e-23 | |
| Q80UN1 | 339 | BTB/POZ domain-containing | no | no | 0.79 | 0.699 | 0.302 | 2e-23 | |
| Q7TPL3 | 315 | BTB/POZ domain-containing | no | no | 0.34 | 0.323 | 0.542 | 2e-23 | |
| Q922M3 | 315 | BTB/POZ domain-containing | no | no | 0.34 | 0.323 | 0.532 | 6e-23 | |
| Q8BGV7 | 329 | BTB/POZ domain-containing | no | no | 0.4 | 0.364 | 0.410 | 1e-19 | |
| Q8WZ19 | 329 | BTB/POZ domain-containing | no | no | 0.35 | 0.319 | 0.462 | 2e-19 | |
| Q28DC9 | 319 | BTB/POZ domain-containing | no | no | 0.386 | 0.363 | 0.427 | 5e-19 | |
| Q5F3E8 | 314 | BTB/POZ domain-containing | no | no | 0.39 | 0.372 | 0.422 | 1e-18 |
| >sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/301 (78%), Positives = 262/301 (87%), Gaps = 4/301 (1%)
Query: 1 MAKDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSE-GYIFVDRD 59
M S+ SSMVRLNIGGKKF TTIDTLT REP+SMLAAMFSGRH + Q+S+ GY+F+DRD
Sbjct: 1 METSSNLSSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRD 60
Query: 60 GKHFRHILNWLRDGAVPTLTESKFLELLREAEYYQLLGLIERIHAVINKRKEDNELDTEL 119
GKHFRHILNWLRDG +P+L++ ELLREA+YYQLLGL + I + RKE E++ EL
Sbjct: 61 GKHFRHILNWLRDGVIPSLSDPDCSELLREADYYQLLGLKDGIK---DSRKEVGEVEAEL 117
Query: 120 TRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVD 179
TRIDIIKCIQ+E+VRFRG+NLSG+DLSKLDLSLVDFSYACLRNVFFSR NLQ AKFR+ D
Sbjct: 118 TRIDIIKCIQTERVRFRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNAD 177
Query: 180 AEGSIFHNATLRECEFAGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTAD 239
AEGSIFHNA LRECEF ANLRGALLAG NLQSANLQDAC++ CSFCGADLR+AHLQ AD
Sbjct: 178 AEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNAD 237
Query: 240 LTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299
LTNANLEGANLEGANLKGAKL NAN KGANLQRAYLRHVNLR+ H+EGA L GAN+ GAI
Sbjct: 238 LTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGANMTGAI 297
Query: 300 R 300
R
Sbjct: 298 R 298
|
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9H3F6|BACD3_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Homo sapiens GN=KCTD10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q80UN1|KCTD9_MOUSE BTB/POZ domain-containing protein KCTD9 OS=Mus musculus GN=Kctd9 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7TPL3|BACD3_RAT BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Rattus norvegicus GN=Kctd10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q922M3|BACD3_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Mus musculus GN=Kctd10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BGV7|BACD1_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 OS=Mus musculus GN=Kctd13 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8WZ19|BACD1_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 OS=Homo sapiens GN=KCTD13 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q28DC9|BACD2_XENTR BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Xenopus tropicalis GN=tnfaip1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q5F3E8|BACD2_CHICK BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Gallus gallus GN=TNFAIP1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| 255569476 | 301 | BTB/POZ domain-containing protein KCTD9, | 1.0 | 0.996 | 0.860 | 1e-149 | |
| 225439229 | 302 | PREDICTED: FH protein interacting protei | 0.986 | 0.980 | 0.849 | 1e-142 | |
| 224146042 | 300 | predicted protein [Populus trichocarpa] | 0.993 | 0.993 | 0.812 | 1e-140 | |
| 356511752 | 302 | PREDICTED: FH protein interacting protei | 0.986 | 0.980 | 0.841 | 1e-140 | |
| 388504282 | 302 | unknown [Medicago truncatula] | 0.986 | 0.980 | 0.841 | 1e-136 | |
| 449462770 | 300 | PREDICTED: FH protein interacting protei | 0.993 | 0.993 | 0.802 | 1e-135 | |
| 297792969 | 298 | hypothetical protein ARALYDRAFT_918639 [ | 0.99 | 0.996 | 0.790 | 1e-133 | |
| 224125948 | 303 | predicted protein [Populus trichocarpa] | 0.993 | 0.983 | 0.794 | 1e-133 | |
| 15240437 | 298 | potassium channel tetramerisation and pe | 0.99 | 0.996 | 0.780 | 1e-133 | |
| 30696554 | 290 | potassium channel tetramerisation and pe | 0.93 | 0.962 | 0.787 | 1e-125 |
| >gi|255569476|ref|XP_002525705.1| BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis] gi|223535005|gb|EEF36688.1| BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/301 (86%), Positives = 284/301 (94%), Gaps = 1/301 (0%)
Query: 1 MAKDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSE-GYIFVDRD 59
M K+S SS+VRLNIGG+KF TT+DTLT+REP+SMLAAMFSGRHTV +D E GY+FVDRD
Sbjct: 1 MMKESSFSSLVRLNIGGRKFCTTVDTLTQREPDSMLAAMFSGRHTVCEDPEKGYVFVDRD 60
Query: 60 GKHFRHILNWLRDGAVPTLTESKFLELLREAEYYQLLGLIERIHAVINKRKEDNELDTEL 119
GKHFRHILNWLRDGAVPTL+++++ EL+REAEYYQLLGLIE I++V+NKRKE ELDTEL
Sbjct: 61 GKHFRHILNWLRDGAVPTLSDAEYSELMREAEYYQLLGLIEGINSVLNKRKEVEELDTEL 120
Query: 120 TRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVD 179
TR DIIKCIQS+KVRFRG+NLSGLDLSKLDLS VDFSYACL+NVFFSRANLQ AKFRDVD
Sbjct: 121 TRTDIIKCIQSDKVRFRGVNLSGLDLSKLDLSFVDFSYACLKNVFFSRANLQCAKFRDVD 180
Query: 180 AEGSIFHNATLRECEFAGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTAD 239
AEGSIFHNATLRECEF GANLRGALLAG+NLQSANLQDAC+IDCSFCGADLRSAHLQTAD
Sbjct: 181 AEGSIFHNATLRECEFTGANLRGALLAGSNLQSANLQDACLIDCSFCGADLRSAHLQTAD 240
Query: 240 LTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299
LTNANLEGANLEGANLKGAKL NANLKGANLQRAYLRHVNL++THLE A+LDGANLLGAI
Sbjct: 241 LTNANLEGANLEGANLKGAKLNNANLKGANLQRAYLRHVNLQNTHLENARLDGANLLGAI 300
Query: 300 R 300
R
Sbjct: 301 R 301
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439229|ref|XP_002276761.1| PREDICTED: FH protein interacting protein FIP2 [Vitis vinifera] gi|296085912|emb|CBI31236.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224146042|ref|XP_002325857.1| predicted protein [Populus trichocarpa] gi|222862732|gb|EEF00239.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356511752|ref|XP_003524587.1| PREDICTED: FH protein interacting protein FIP2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|388504282|gb|AFK40207.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449462770|ref|XP_004149113.1| PREDICTED: FH protein interacting protein FIP2-like [Cucumis sativus] gi|449524607|ref|XP_004169313.1| PREDICTED: FH protein interacting protein FIP2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297792969|ref|XP_002864369.1| hypothetical protein ARALYDRAFT_918639 [Arabidopsis lyrata subsp. lyrata] gi|297310204|gb|EFH40628.1| hypothetical protein ARALYDRAFT_918639 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224125948|ref|XP_002319715.1| predicted protein [Populus trichocarpa] gi|222858091|gb|EEE95638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|15240437|ref|NP_200311.1| potassium channel tetramerisation and pentapeptide repeat-containing protein [Arabidopsis thaliana] gi|75265738|sp|Q9SE95.1|FIP2_ARATH RecName: Full=FH protein interacting protein FIP2; AltName: Full=BTB/POZ domain-containing protein At5g55000 gi|6503014|gb|AAF14550.1|AF174429_1 FH protein interacting protein FIP2 [Arabidopsis thaliana] gi|10177375|dbj|BAB10574.1| FH protein interacting protein FIP2 [Arabidopsis thaliana] gi|124301158|gb|ABN04831.1| At5g55000 [Arabidopsis thaliana] gi|332009184|gb|AED96567.1| potassium channel tetramerisation and pentapeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30696554|ref|NP_851193.1| potassium channel tetramerisation and pentapeptide repeat-containing protein [Arabidopsis thaliana] gi|332009185|gb|AED96568.1| potassium channel tetramerisation and pentapeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| TAIR|locus:2160230 | 298 | FIP2 [Arabidopsis thaliana (ta | 0.99 | 0.996 | 0.691 | 3.1e-106 | |
| DICTYBASE|DDB_G0269760 | 355 | DDB_G0269760 "potassium channe | 0.863 | 0.729 | 0.286 | 9.1e-29 | |
| FB|FBgn0037244 | 361 | CG14647 [Drosophila melanogast | 0.93 | 0.772 | 0.294 | 3.5e-27 | |
| UNIPROTKB|Q5ZJ71 | 389 | KCTD9 "Uncharacterized protein | 0.92 | 0.709 | 0.300 | 5.2e-26 | |
| UNIPROTKB|Q7L273 | 389 | KCTD9 "BTB/POZ domain-containi | 0.92 | 0.709 | 0.300 | 1.1e-25 | |
| DICTYBASE|DDB_G0291330 | 488 | kctd9 "potassium channel tetra | 0.92 | 0.565 | 0.286 | 2.3e-25 | |
| ZFIN|ZDB-GENE-050320-147 | 391 | zgc:113115 "zgc:113115" [Danio | 0.96 | 0.736 | 0.294 | 2e-24 | |
| UNIPROTKB|F1MFU2 | 392 | KCTD9 "Uncharacterized protein | 0.92 | 0.704 | 0.297 | 2.6e-24 | |
| UNIPROTKB|F1PTL8 | 393 | KCTD9 "Uncharacterized protein | 0.92 | 0.702 | 0.297 | 2.6e-24 | |
| UNIPROTKB|F1RJU1 | 392 | KCTD9 "Uncharacterized protein | 0.92 | 0.704 | 0.297 | 2.6e-24 |
| TAIR|locus:2160230 FIP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 208/301 (69%), Positives = 233/301 (77%)
Query: 1 MAKDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRHTVFQDSE-GYIFVDRD 59
M S+ SSMVRLNIGGKKF TTIDTLT REP+SMLAAMFSGRH + Q+S+ GY+F+DRD
Sbjct: 1 METSSNLSSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRD 60
Query: 60 GKHFRHILNWLRDGAVPTLTESKFLELLREAEYYQLLGLIERIHAVINKRKEDNELDTEL 119
GKHFRHILNWLRDG +P+L++ ELLREA+YYQLLGL + I + RKE E++ EL
Sbjct: 61 GKHFRHILNWLRDGVIPSLSDPDCSELLREADYYQLLGLKDGIK---DSRKEVGEVEAEL 117
Query: 120 TRIDIIKCIQSEKVRFRGXXXXXXXXXXXXXXXXXFSYACLRNVFFSRANLQSAKFRDVD 179
TRIDIIKCIQ+E+VRFRG FSYACLRNVFFSR NLQ AKFR+ D
Sbjct: 118 TRIDIIKCIQTERVRFRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNAD 177
Query: 180 AEGSIFHNATLRECEFXXXXXXXXXXXXXXXQSANLQDACMIDCSFCGADLRSAHLQTAD 239
AEGSIFHNA LRECEF QSANLQDAC++ CSFCGADLR+AHLQ AD
Sbjct: 178 AEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNAD 237
Query: 240 LTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAI 299
LTNANLEGANLEGANLKGAKL NAN KGANLQRAYLRHVNLR+ H+EGA L GAN+ GAI
Sbjct: 238 LTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGANMTGAI 297
Query: 300 R 300
R
Sbjct: 298 R 298
|
|
| DICTYBASE|DDB_G0269760 DDB_G0269760 "potassium channel tetramerization domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0037244 CG14647 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZJ71 KCTD9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7L273 KCTD9 "BTB/POZ domain-containing protein KCTD9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0291330 kctd9 "potassium channel tetramerization domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050320-147 zgc:113115 "zgc:113115" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MFU2 KCTD9 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PTL8 KCTD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RJU1 KCTD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SE95 | FIP2_ARATH | No assigned EC number | 0.7807 | 0.99 | 0.9966 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 300 | |||
| COG1357 | 238 | COG1357, COG1357, Pentapeptide repeats containing | 9e-34 | |
| COG1357 | 238 | COG1357, COG1357, Pentapeptide repeats containing | 2e-27 | |
| COG1357 | 238 | COG1357, COG1357, Pentapeptide repeats containing | 3e-25 | |
| pfam02214 | 92 | pfam02214, K_tetra, K+ channel tetramerisation dom | 3e-22 | |
| PRK15196 | 350 | PRK15196, PRK15196, secreted effector protein PipB | 2e-20 | |
| PRK15196 | 350 | PRK15196, PRK15196, secreted effector protein PipB | 1e-15 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 2e-14 | |
| PRK15197 | 291 | PRK15197, PRK15197, secreted effector protein PipB | 3e-14 | |
| PRK15196 | 350 | PRK15196, PRK15196, secreted effector protein PipB | 6e-13 | |
| PRK15197 | 291 | PRK15197, PRK15197, secreted effector protein PipB | 1e-12 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 8e-10 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 1e-09 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 3e-09 | |
| COG1357 | 238 | COG1357, COG1357, Pentapeptide repeats containing | 1e-08 | |
| PRK15197 | 291 | PRK15197, PRK15197, secreted effector protein PipB | 1e-08 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 1e-08 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 2e-08 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 3e-08 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 7e-08 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 9e-08 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 1e-07 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 1e-07 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 5e-07 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 5e-07 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 5e-07 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 5e-07 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 6e-07 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 8e-07 | |
| PRK15377 | 782 | PRK15377, PRK15377, E3 ubiquitin-protein ligase So | 9e-07 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 1e-06 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 1e-05 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 1e-05 | |
| PRK15377 | 782 | PRK15377, PRK15377, E3 ubiquitin-protein ligase So | 4e-05 | |
| PRK15377 | 782 | PRK15377, PRK15377, E3 ubiquitin-protein ligase So | 5e-05 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 6e-05 | |
| pfam13599 | 77 | pfam13599, Pentapeptide_4, Pentapeptide repeats (9 | 8e-05 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 9e-05 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 3e-04 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 4e-04 | |
| PRK15196 | 350 | PRK15196, PRK15196, secreted effector protein PipB | 0.001 | |
| pfam00805 | 40 | pfam00805, Pentapeptide, Pentapeptide repeats (8 c | 0.002 |
| >gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown] | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 9e-34
Identities = 79/201 (39%), Positives = 101/201 (50%), Gaps = 10/201 (4%)
Query: 109 RKEDNELDTELTRIDIIK-CIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFF-- 165
+ EL L D+ +Q + F NLSGLDLS +LS D S A LR
Sbjct: 19 LQGIRELKANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSNANLRGADLSK 78
Query: 166 ----SRANLQSAKFRDVDAEGSIFHNATLR---ECEFAGANLRGALLAGANLQSANLQDA 218
S A+L+ A R + G+ A L +GA+L GA L+ ANL ANL A
Sbjct: 79 GADLSGADLEGANLRGANLSGANLSGANLSNATRANLSGADLSGANLSNANLTGANLSGA 138
Query: 219 CMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHV 278
+ + A+L A L ADL+ A+L GANL GA+L+GA L ANL GA+L+ A L
Sbjct: 139 NLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGA 198
Query: 279 NLRDTHLEGAKLDGANLLGAI 299
+L L GA L ANL GA
Sbjct: 199 DLSGADLTGANLVNANLGGAN 219
|
Length = 238 |
| >gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain | Back alignment and domain information |
|---|
| >gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
| >gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 100.0 | |
| PRK15196 | 350 | secreted effector protein PipB2; Provisional | 99.95 | |
| PRK15196 | 350 | secreted effector protein PipB2; Provisional | 99.94 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 99.92 | |
| PRK09718 | 512 | hypothetical protein; Validated | 99.91 | |
| KOG2715 | 210 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| PRK09718 | 512 | hypothetical protein; Validated | 99.89 | |
| KOG1665 | 302 | consensus AFH1-interacting protein FIP2, contains | 99.88 | |
| KOG2716 | 230 | consensus Polymerase delta-interacting protein PDI | 99.87 | |
| KOG2714 | 465 | consensus SETA binding protein SB1 and related pro | 99.86 | |
| COG1357 | 238 | Pentapeptide repeats containing protein [Function | 99.85 | |
| KOG2723 | 221 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| PRK15197 | 291 | secreted effector protein PipB; Provisional | 99.78 | |
| PRK15197 | 291 | secreted effector protein PipB; Provisional | 99.78 | |
| PRK15377 | 782 | E3 ubiquitin-protein ligase SopA; Provisional | 99.76 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.74 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 99.71 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.23 | |
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 98.77 | |
| KOG3840 | 438 | consensus Uncharaterized conserved protein, contai | 98.31 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 97.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.39 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.01 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.39 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.73 | |
| PF02519 | 100 | Auxin_inducible: Auxin responsive protein; InterPr | 87.67 | |
| KOG4350 | 620 | consensus Uncharacterized conserved protein, conta | 86.0 |
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=396.86 Aligned_cols=296 Identities=53% Similarity=0.797 Sum_probs=282.4
Q ss_pred CCCCCCCCCcEEEeeCCEEEEEehhhhhcCCCCchHHHHhcCCC-CcccCCCCcEEEcCCCCcHHHHHHHHhcCCCCCCC
Q 022265 1 MAKDSDSSSMVRLNIGGKKFYTTIDTLTRREPESMLAAMFSGRH-TVFQDSEGYIFVDRDGKHFRHILNWLRDGAVPTLT 79 (300)
Q Consensus 1 ~~~~~~~~~~v~lnVgG~~f~~~~~tl~~~~p~s~l~~~~~~~~-~~~~~~~~~~fiDrdp~~F~~Il~~lr~g~~~~~~ 79 (300)
|.....++.+|+|||||+.|.|+++||.-|.|+|||+.||+++. +.++++.|.|+|||+|.||++||+|||.|.+|..+
T Consensus 1 ~~t~~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s 80 (302)
T KOG1665|consen 1 METSSNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLS 80 (302)
T ss_pred CCcccChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecC
Confidence 45566778999999999999999999998899999999999864 66789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhchhhHHHHHHHhhhhcccccccccchhHHHHHHHhhccCceeccccccCCCCCCCcCCcccccccc
Q 022265 80 ESKFLELLREAEYYQLLGLIERIHAVINKRKEDNELDTELTRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYAC 159 (300)
Q Consensus 80 ~~~~~~l~~Ea~f~~l~~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~ 159 (300)
++....+++||.||+|..|++.+++ .+++.+..++++++.+++++++..+.+|+|++|+|+||+..||+.++|+.+.
T Consensus 81 ~i~~lgvLeeArff~i~sL~~hle~---~~~e~pe~~~pltR~diik~iqT~elRfqGvNlSGaDLskLDlr~inFkyA~ 157 (302)
T KOG1665|consen 81 DIDCLGVLEEARFFQILSLKDHLED---SRKEVPEVEAPLTRIDIIKCIQTEELRFQGVNLSGADLSKLDLRLINFKYAN 157 (302)
T ss_pred CccHHHHHHHhhHHhhHhHHhHHhh---hccCCCcCCCCccHHHHHHHhhhhheeeecccccccchhhcccccccceehh
Confidence 9999999999999999999999976 5666788899999999999999999999999999999999999999999999
Q ss_pred ccceeccccccccccccccccCCccccccccccccccccccccceeccccccc-----cccccceecCceeecccccccc
Q 022265 160 LRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRGALLAGANLQS-----ANLQDACMIDCSFCGADLRSAH 234 (300)
Q Consensus 160 l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~~~~~~-----~~f~~~~l~~~~f~~~~l~~~~ 234 (300)
+++|.|+.++|.-|.|+.++++++.|..++|.++.+.-+++.++.+.+++|+. ++++++.+.+|.|.++++++++
T Consensus 158 ls~c~lshtNL~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfedps~~kaNLeganLkG~~~egs~m~gin 237 (302)
T KOG1665|consen 158 LSNCNLSHTNLQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFEDPSGLKANLEGANLKGADMEGSQMTGIN 237 (302)
T ss_pred hccccccccchhhhhhcccccccchhhhhhhhhhhheecccccccccCcCCCCccchhccccccccccccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccccccccCCCcccCceecCccccCccccCcccCCccccCccccCCccCCceecCCccCCCcC
Q 022265 235 LQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGAIR 300 (300)
Q Consensus 235 f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~g~i~ 300 (300)
++.++++++++++|+++++++.++++++|+|++++++.+++++++++++.++ +++++..+++||+
T Consensus 238 LrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~~e-~mltplhMsqaiR 302 (302)
T KOG1665|consen 238 LRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAHME-AMLTPLHMSQAIR 302 (302)
T ss_pred eEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHHHH-hhccchhhccccC
Confidence 9999999999999999999999999999999999999999999999999999 9999999999985
|
|
| >PRK15196 secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >PRK15196 secreted effector protein PipB2; Provisional | Back alignment and domain information |
|---|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >PRK09718 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09718 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG1357 Pentapeptide repeats containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15197 secreted effector protein PipB; Provisional | Back alignment and domain information |
|---|
| >PRK15197 secreted effector protein PipB; Provisional | Back alignment and domain information |
|---|
| >PRK15377 E3 ubiquitin-protein ligase SopA; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
| >KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
| >PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) [] | Back alignment and domain information |
|---|
| >KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 300 | ||||
| 2j8k_A | 201 | Structure Of The Fusion Of Np275 And Np276, Pentape | 1e-15 | ||
| 2j8k_A | 201 | Structure Of The Fusion Of Np275 And Np276, Pentape | 6e-06 | ||
| 2o6w_A | 150 | Crystal Structure Of A Pentapeptide Repeat Protein | 1e-09 | ||
| 3du1_X | 257 | The 2.0 Angstrom Resolution Crystal Structure Of He | 2e-08 | ||
| 3drz_A | 107 | X-Ray Crystal Structure Of The N-Terminal Btb Domai | 6e-08 | ||
| 3drx_A | 202 | X-Ray Crystal Structure Of Human Kctd5 Protein Crys | 6e-08 | ||
| 2j8i_A | 118 | Structure Of Np275, A Pentapeptide Repeat Protein F | 1e-06 | ||
| 2bm4_A | 186 | The Structure Of Mfpa (Rv3361c, C2 Crystal Form). T | 3e-06 | ||
| 2g0y_A | 184 | Crystal Structure Of A Lumenal Pentapeptide Repeat | 3e-05 | ||
| 2f3l_A | 184 | Crystal Structure Of A Lumenal Rfr-Domain Protein ( | 3e-05 | ||
| 3n90_A | 152 | The 1.7 Angstrom Resolution Crystal Structure Of At | 6e-05 | ||
| 1nn7_A | 105 | Crystal Structure Of The Tetramerization Domain Of | 9e-05 |
| >pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201 | Back alignment and structure |
|
| >pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201 | Back alignment and structure |
| >pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23) From The Cyanobacterium Cyanothece 51142 Length = 150 | Back alignment and structure |
| >pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A Pentapeptide Repeat Protein Involved In Heterocyst Differentiation Regulation From The Cyanobacterium Nostoc Sp. Strain Pcc 7120 Length = 257 | Back alignment and structure |
| >pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107 | Back alignment and structure |
| >pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202 | Back alignment and structure |
| >pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From Nostoc Punctiforme Length = 118 | Back alignment and structure |
| >pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The Pentapeptide Repeat Protein From Mycobacterium Tuberculosis Folds As A Right-Handed Quadrilateral Beta- Helix. Length = 186 | Back alignment and structure |
| >pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece Sp 51142 At 2.3 Angstrom Resolution. Tetragonal Crystal Form Length = 184 | Back alignment and structure |
| >pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein (Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1 Angstrom Resolution Length = 184 | Back alignment and structure |
| >pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152 | Back alignment and structure |
| >pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shal Voltage- Gated Potassium Channel Length = 105 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 1e-56
Identities = 60/180 (33%), Positives = 86/180 (47%)
Query: 119 LTRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDV 178
+ + + + + F ++L G L ++LS A L +ANL A
Sbjct: 21 MDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA 80
Query: 179 DAEGSIFHNATLRECEFAGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTA 238
G+ A L + + + A L A+L GA L A L A + + A L A+++ A
Sbjct: 81 TLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREA 140
Query: 239 DLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDGANLLGA 298
DL+ ANLE A+L GA+L A L ANL A L+RA L NL D +LEG L+G N A
Sbjct: 141 DLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200
|
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201 | Back alignment and structure |
|---|
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201 | Back alignment and structure |
|---|
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201 | Back alignment and structure |
|---|
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257 | Back alignment and structure |
|---|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217 | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200 | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200 | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200 | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150 | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613 | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613 | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613 | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613 | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152 | Back alignment and structure |
|---|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214 | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214 | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214 | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214 | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216 | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216 | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216 | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216 | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216 | Back alignment and structure |
|---|
| >2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627 | Back alignment and structure |
|---|
| >2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627 | Back alignment and structure |
|---|
| >2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627 | Back alignment and structure |
|---|
| >2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627 | Back alignment and structure |
|---|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 | Back alignment and structure |
|---|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 | Back alignment and structure |
|---|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 | Back alignment and structure |
|---|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 | Back alignment and structure |
|---|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| 2j8k_A | 201 | NP275-NP276; pentapeptide repeat protein, PRP, rig | 99.97 | |
| 3du1_X | 257 | ALL3740 protein, HETL; right-handed beta helix, re | 99.97 | |
| 3du1_X | 257 | ALL3740 protein, HETL; right-handed beta helix, re | 99.97 | |
| 2w7z_A | 214 | EFSQNR, pentapeptide repeat family protein; glutar | 99.96 | |
| 2j8k_A | 201 | NP275-NP276; pentapeptide repeat protein, PRP, rig | 99.96 | |
| 2xty_A | 217 | QNRB1; cell cycle, pentapeptide repeat, PRP, antib | 99.96 | |
| 2xt2_A | 200 | ALBG, MCBG-like protein; cell cycle, right handed | 99.96 | |
| 3pss_A | 216 | QNR; pentapeptide repeat, antibiotic resistance, D | 99.96 | |
| 2xty_A | 217 | QNRB1; cell cycle, pentapeptide repeat, PRP, antib | 99.96 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 99.96 | |
| 2w7z_A | 214 | EFSQNR, pentapeptide repeat family protein; glutar | 99.96 | |
| 3pss_A | 216 | QNR; pentapeptide repeat, antibiotic resistance, D | 99.96 | |
| 2xt2_A | 200 | ALBG, MCBG-like protein; cell cycle, right handed | 99.96 | |
| 2bm5_A | 186 | MFPA, RV3361C, pentapeptide repeat family protein; | 99.96 | |
| 2bm5_A | 186 | MFPA, RV3361C, pentapeptide repeat family protein; | 99.95 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 99.95 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 99.95 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 99.95 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 99.94 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 99.93 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 99.93 | |
| 2o6w_A | 150 | Repeat five residue (RFR) protein or pentapeptide | 99.91 | |
| 2o6w_A | 150 | Repeat five residue (RFR) protein or pentapeptide | 99.91 | |
| 3nb2_A | 613 | Secreted effector protein; pentapeptide, HECT doma | 99.89 | |
| 3nb2_A | 613 | Secreted effector protein; pentapeptide, HECT doma | 99.89 | |
| 2f3l_A | 184 | RFR-domain; beta helix, unknown function; 2.11A {C | 99.87 | |
| 2f3l_A | 184 | RFR-domain; beta helix, unknown function; 2.11A {C | 99.86 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.82 | |
| 2qyu_A | 627 | Secreted effector protein; ubiquitin E3 ligase, li | 99.6 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 98.51 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 98.46 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 98.35 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 98.33 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 98.29 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 98.22 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 98.22 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 98.22 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 98.21 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 98.2 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 98.12 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 98.06 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 98.06 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 98.04 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 97.99 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 97.9 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 97.8 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 97.71 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 97.62 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 97.4 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 94.68 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 89.47 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 88.97 |
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=221.21 Aligned_cols=177 Identities=33% Similarity=0.420 Sum_probs=113.2
Q ss_pred ccchhHHHHHHHhhccCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCccccccccccccc
Q 022265 116 DTELTRIDIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEF 195 (300)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f 195 (300)
...++..++.+.+.....+|++++|++++|++++|++++|++|+|.+|+|.+|+|.+++|.+++|.+|+|.+|+|.+++|
T Consensus 18 ~~~m~~~~ll~~~~~g~~~~~~~dl~~~~l~~~~l~~~~l~~a~l~~a~l~~a~ls~a~l~~a~l~~a~l~~a~l~~a~l 97 (201)
T 2j8k_A 18 GSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADL 97 (201)
T ss_dssp SSBCCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cccCCHHHHHHHHHcCccccccCcCCCCccCCCccCCCCcCCCccCCCccCCCccCcCCCCCCCcCCcCcCCCEECCCCc
Confidence 44577778887776667788888888888888888877777777777777777777777777777777777777776666
Q ss_pred cccccccceeccccccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccc
Q 022265 196 AGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYL 275 (300)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (300)
.+++|.++.|.+++|.+++|.++.|.+++|.+++|++++|.+++|++++|++|+|.+++|.+++|.+++|.+++|.+++|
T Consensus 98 ~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l 177 (201)
T 2j8k_A 98 SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANL 177 (201)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cCCccCCCEeCccCcCCCCcccCcCccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCC
Confidence 66666666666666666666666666555555555555555555555555555555555555555555444444444444
Q ss_pred cCccccCCccCCceecC
Q 022265 276 RHVNLRDTHLEGAKLDG 292 (300)
Q Consensus 276 ~~~~~~~~~~~~~~l~~ 292 (300)
.++++++++|+++.+.+
T Consensus 178 ~~a~l~~a~l~ga~l~~ 194 (201)
T 2j8k_A 178 TGANLEDANLEGTILEG 194 (201)
T ss_dssp TTCBCTTCBCTTSTTTT
T ss_pred CCCCcCCCEECcCCCCC
Confidence 44444444444444433
|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
| >3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A | Back alignment and structure |
|---|
| >2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A | Back alignment and structure |
|---|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A | Back alignment and structure |
|---|
| >2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A | Back alignment and structure |
|---|
| >2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A | Back alignment and structure |
|---|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} | Back alignment and structure |
|---|
| >2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A | Back alignment and structure |
|---|
| >3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A | Back alignment and structure |
|---|
| >2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A | Back alignment and structure |
|---|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 300 | ||||
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 2e-28 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 1e-26 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 2e-26 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 5e-12 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 9e-11 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 9e-09 | |
| d2j8ka1 | 175 | b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme | 4e-06 | |
| d1nn7a_ | 105 | d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus | 6e-25 | |
| d1t1da_ | 100 | d.42.1.2 (A:) Shaker potassium channel {California | 6e-24 | |
| d3kvta_ | 103 | d.42.1.2 (A:) akv3.1 voltage-gated potassium chann | 1e-23 | |
| d2f3la1 | 132 | b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya | 9e-18 | |
| d2f3la1 | 132 | b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya | 2e-17 | |
| d2f3la1 | 132 | b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya | 5e-13 | |
| d2bm5a1 | 181 | b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M | 4e-15 | |
| d2bm5a1 | 181 | b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M | 2e-11 | |
| d2bm5a1 | 181 | b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M | 4e-10 |
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pentapeptide repeat-like family: Pentapeptide repeats domain: NP275-NP276 species: Nostoc punctiforme [TaxId: 272131]
Score = 105 bits (263), Expect = 2e-28
Identities = 58/158 (36%), Positives = 79/158 (50%)
Query: 135 FRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECE 194
F ++L G L ++LS A L +ANL A G+ A L + +
Sbjct: 17 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 76
Query: 195 FAGANLRGALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGAN 254
+ A L A+L GA L A L A + + A L A+++ ADL+ ANLE A+L GA+
Sbjct: 77 LSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGAD 136
Query: 255 LKGAKLRNANLKGANLQRAYLRHVNLRDTHLEGAKLDG 292
L A L ANL A L+RA L NL D +LEG L+G
Sbjct: 137 LAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174
|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175 | Back information, alignment and structure |
|---|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 | Back information, alignment and structure |
|---|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 | Back information, alignment and structure |
|---|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 | Back information, alignment and structure |
|---|
| >d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132 | Back information, alignment and structure |
|---|
| >d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132 | Back information, alignment and structure |
|---|
| >d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132 | Back information, alignment and structure |
|---|
| >d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
| >d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
| >d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| d2j8ka1 | 175 | NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} | 99.96 | |
| d2j8ka1 | 175 | NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} | 99.95 | |
| d2bm5a1 | 181 | Hypothetical protein Rv3361c (MT3469) {Mycobacteri | 99.95 | |
| d2bm5a1 | 181 | Hypothetical protein Rv3361c (MT3469) {Mycobacteri | 99.94 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 99.94 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 99.94 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 99.93 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 98.17 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 98.07 |
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pentapeptide repeat-like family: Pentapeptide repeats domain: NP275-NP276 species: Nostoc punctiforme [TaxId: 272131]
Probab=99.96 E-value=2.7e-29 Score=201.87 Aligned_cols=170 Identities=32% Similarity=0.423 Sum_probs=101.4
Q ss_pred HHHHHhhccCceeccccccCCCCCCCcCCccccccccccceeccccccccccccccccCCcccccccccccccccccccc
Q 022265 123 DIIKCIQSEKVRFRGLNLSGLDLSKLDLSLVDFSYACLRNVFFSRANLQSAKFRDVDAEGSIFHNATLRECEFAGANLRG 202 (300)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~l~~~~f~~~~l~~ 202 (300)
.+.+.+..++.+|++++|.|++|++++|++++|+++.|.+++|.+|+|.++.|.++.+.+|.|.++.+..+.|.++.|.+
T Consensus 5 ~~~~~~~~~e~dF~~~dls~~~f~~~~f~~~~f~~~~f~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~f~~ 84 (175)
T d2j8ka1 5 KLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDN 84 (175)
T ss_dssp HHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred HHHHHHHhcccCcCcCcCCCCccCCcCCCCCCcCCCCcchhhccccccccccccccccccccccccccccccccCccccc
Confidence 34445555667788888887777777777777777776666666666666666666665555555555555555555555
Q ss_pred ceeccccccccccccceecCceeecccccccccccccccccccCCCcccCceecCccccCccccCcccCCccccCccccC
Q 022265 203 ALLAGANLQSANLQDACMIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLRNANLKGANLQRAYLRHVNLRD 282 (300)
Q Consensus 203 ~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (300)
+.|.++.|.++. |.+|.+.+++|+++.|.+++|.+++|.+++|.+++|.++.+.+++|++++|.++.|.+++|.+
T Consensus 85 ~~f~~~~f~~~~-----f~~~~~~~~~~~~s~~~~~~f~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
T d2j8ka1 85 AILEGAILDEAV-----LNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 159 (175)
T ss_dssp CBCTTCBCTTCB-----CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred cCccCCcccCeE-----eeecccccccccCCEeCCCEeccCCCCCCccccCCCccccccccccCcCCcCCCEeCCCCcCC
Confidence 555554444444 444444444555555555555555555555555555555555555555555555666666666
Q ss_pred CccCCceecCCccCC
Q 022265 283 THLEGAKLDGANLLG 297 (300)
Q Consensus 283 ~~~~~~~l~~~~l~g 297 (300)
++|++++|++++|.|
T Consensus 160 a~l~~a~~~g~~l~g 174 (175)
T d2j8ka1 160 ANLEDANLEGTILEG 174 (175)
T ss_dssp CBCTTCBCTTSTTTT
T ss_pred CCcCCCEEeceEcCC
Confidence 666666666666654
|
| >d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
| >d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|