Citrus Sinensis ID: 022271
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | 2.2.26 [Sep-21-2011] | |||||||
| O05413 | 347 | Probable nitronate monoox | yes | no | 0.84 | 0.726 | 0.238 | 7e-18 | |
| A8Z1H7 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.265 | 1e-17 | |
| A6QFD2 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.265 | 1e-17 | |
| Q5HHG4 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.265 | 1e-17 | |
| Q2FZX9 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.265 | 1e-17 | |
| Q2FIF3 | 355 | Probable nitronate monoox | N/A | no | 0.81 | 0.684 | 0.265 | 1e-17 | |
| Q6GB05 | 355 | Probable nitronate monoox | yes | no | 0.833 | 0.704 | 0.256 | 9e-17 | |
| Q6GIG7 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.256 | 4e-16 | |
| Q99VF6 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.256 | 4e-16 | |
| A5IR97 | 355 | Probable nitronate monoox | yes | no | 0.81 | 0.684 | 0.256 | 4e-16 |
| >sp|O05413|2NPD_BACSU Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 100/352 (28%)
Query: 13 IVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV- 71
I+QAP+ I+ P L +AV+N G LG L A + PD L I++ LT+ PF + V
Sbjct: 14 IIQAPMAGGITKPRLASAVSNQGALGSL-ASGYLTPDLLEQQIKEIFELTDAPFQINVFV 72
Query: 72 ---LAFPHNENIKA------------------------------ILSEKVAVLQVSWGEY 98
L P + IK IL KV ++
Sbjct: 73 PLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLP 132
Query: 99 SEELVLEAHSAGVKVV-----------------------------------PQDG----- 118
E+ V E +AG ++ P G
Sbjct: 133 PEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVG 192
Query: 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 178
L++L+P D + +P+IAAGG++D RG AAL+LGAQG+ +G+ F+ ES AHP +
Sbjct: 193 LMALIPQAADALS---VPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVH 249
Query: 179 KRKLVEMDK--TEYTDVFGRARWPGAPHRVLQTPFFSNWKNIP-AHENEVNQPIIGRSTI 235
K+K++E ++ T+ T +F G ++ ++ + +P ++N + + + ++++
Sbjct: 250 KQKILEANEADTKLTTLFSGKEARGIVNKWMEENEQFETQTLPYPYQNTLTKAMRQKASL 309
Query: 236 HGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 287
+ D M ++AG+G+ + E + +++ QL +
Sbjct: 310 Q-------------------NNHDQMSLWAGQGIRSLTEEISVKQLLNQLCQ 342
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: .EC: 1EC: 6 |
| >sp|A8Z1H7|2NPD_STAAT Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE+++ +A VK++
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|A6QFD2|2NPD_STAAE Probable nitronate monooxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE+++ +A VK++
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain Newman) (taxid: 426430) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q5HHG4|2NPD_STAAC Probable nitronate monooxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE+++ +A VK++
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain COL) (taxid: 93062) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q2FZX9|2NPD_STAA8 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE+++ +A VK++
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q2FIF3|2NPD_STAA3 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE+++ +A VK++
Sbjct: 128 VCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVITKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ IH +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELIHMWSGQSPRLATT 334
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain USA300) (taxid: 367830) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q6GB05|2NPD_STAAS Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 146/339 (43%), Gaps = 89/339 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G SE ++ A +K++
Sbjct: 128 VCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVV---SIPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMV 262
E+ I + G ++ H +G P + TT +++V
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATTHPANTIV 341
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Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q6GIG7|2NPD_STAAR Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKITEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G +E ++ A +K++
Sbjct: 128 VCCFTFGIPNESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|Q99VF6|2NPD_STAAN Probable nitronate monooxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKIIEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G +E ++ A +K++
Sbjct: 128 VCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain N315) (taxid: 158879) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
| >sp|A5IR97|2NPD_STAA9 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_0919 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 89/332 (26%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
ML EY I+QA + + P+LVA+V+N+GGLG + A + L D I R LT
Sbjct: 10 MLSIEYPIIQAGMAGSTT-PKLVASVSNSGGLGTIGAGYFNT-QQLEDEIDYVRQLTSNS 67
Query: 66 FGVGVVLAFPHN------ENIKA------------------------------ILSEKVA 89
FGV V + + EN+ A I+ ++V
Sbjct: 68 FGVNVFVPSQQSYTSSQIENMNAWLKPYRRALHLEEPVVKIIEEQQFKCHIDTIIKKQVP 127
Query: 90 VLQVSWGEYSEELVLEAHSAGVKVV----------------------------------- 114
V ++G +E ++ A +K++
Sbjct: 128 VCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFL 187
Query: 115 ------PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
P G ISL+P +VD++ IP+IAAGGI+D RG +A++ LGA+G+ +GT F+
Sbjct: 188 KPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLT 244
Query: 169 SEESYAHPEYKRKLVEMDKTEY--TDVFGRARWPGAPHRVLQTPFFSNWK-NIPAH--EN 223
S++S A + ++ +T+ T F G +R ++ S ++ +IP + +N
Sbjct: 245 SQDSNASELLRDAIINSKETDTVVTKAFSGKLARGINNRFIEE--MSQYEGDIPDYPIQN 302
Query: 224 EVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 255
E+ I + G ++ H +G P + TT
Sbjct: 303 ELTSSIRKAAANIGDKELTHMWSGQSPRLATT 334
|
Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites. Staphylococcus aureus (strain JH9) (taxid: 359786) EC: 1 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 2 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| 225462874 | 339 | PREDICTED: probable nitronate monooxygen | 1.0 | 0.884 | 0.719 | 1e-136 | |
| 224140777 | 332 | predicted protein [Populus trichocarpa] | 1.0 | 0.903 | 0.710 | 1e-133 | |
| 30697982 | 333 | Aldolase-type TIM barrel family protein | 0.983 | 0.885 | 0.709 | 1e-132 | |
| 357460979 | 330 | 2-nitropropane dioxygenase-like protein | 0.993 | 0.903 | 0.681 | 1e-131 | |
| 255569764 | 332 | 2-nitropropane dioxygenase precursor, pu | 0.993 | 0.897 | 0.709 | 1e-131 | |
| 297797437 | 332 | 2-nitropropane dioxygenase family [Arabi | 0.983 | 0.888 | 0.706 | 1e-131 | |
| 297797441 | 332 | 2-nitropropane dioxygenase family [Arabi | 0.983 | 0.888 | 0.703 | 1e-130 | |
| 356525868 | 330 | PREDICTED: probable nitronate monooxygen | 0.993 | 0.903 | 0.681 | 1e-129 | |
| 449438207 | 336 | PREDICTED: probable nitronate monooxygen | 1.0 | 0.892 | 0.659 | 1e-127 | |
| 211906458 | 334 | 2-nitropropane dioxygenase [Gossypium hi | 0.993 | 0.892 | 0.648 | 1e-113 |
| >gi|225462874|ref|XP_002272947.1| PREDICTED: probable nitronate monooxygenase [Vitis vinifera] gi|296087479|emb|CBI34068.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 277/332 (83%), Gaps = 32/332 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LGFEYG+VQAPLGPDISGPELVAAVANAG +G LRAPDWE PDYLR LI+KTR+
Sbjct: 1 MGWKGVLGFEYGVVQAPLGPDISGPELVAAVANAGAIGFLRAPDWETPDYLRGLIKKTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFGV V+LAFPH EN+KAIL+EKVAVLQVSWG+ EELV EAH AGVKVVP
Sbjct: 61 LTDKPFGVAVILAFPHEENMKAILAEKVAVLQVSWGDVREELVHEAHCAGVKVVPQVGSF 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
QDGLISLLP VVDL+GDRDIP+IAAGGIVD RG
Sbjct: 121 EEARKAIDVGVDAIIVQGREAGGHVIGQDGLISLLPRVVDLVGDRDIPVIAAGGIVDERG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGAQGICLGTRFVA+EES+AHP YKRKL+E+D+TEYT+VFGRARWPGAP RVL+
Sbjct: 181 YVAALALGAQGICLGTRFVATEESHAHPIYKRKLLELDETEYTNVFGRARWPGAPQRVLE 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPFF +WK++PAHE+E+NQP+IG STI+G+EK I R +GTVPN TTTGDI+SMV++AGEG
Sbjct: 241 TPFFKDWKSLPAHESEINQPLIGHSTINGMEKDIRRFSGTVPNRTTTGDIESMVLYAGEG 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 300
VGLI+EILPA EVVK+LVEGAQLL+H +F GL
Sbjct: 301 VGLIKEILPAAEVVKRLVEGAQLLIHQQFGGL 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140777|ref|XP_002323755.1| predicted protein [Populus trichocarpa] gi|222866757|gb|EEF03888.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/332 (71%), Positives = 275/332 (82%), Gaps = 32/332 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE+PDYLR+LIRKTRS
Sbjct: 1 MGWRGILGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYLRELIRKTRS 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFGVG+VLAFPH EN+K IL EKVAVLQV WGE S+ELVLEAH AGVKVVP
Sbjct: 61 LTDKPFGVGLVLAFPHEENLKVILDEKVAVLQVYWGECSKELVLEAHLAGVKVVPQVGSF 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
Q+GLIS+LP VVDL+GDRDIP+IAAGGIV+ARG
Sbjct: 121 EDARKAIDAGVDGIIVQGREAGGHVIGQEGLISILPRVVDLVGDRDIPVIAAGGIVNARG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGA+G+CLGTRFVA+EES AHP YKRKLVE+D+TEYT++FGRARWP AP R L
Sbjct: 181 YVAALALGAKGVCLGTRFVATEESNAHPTYKRKLVELDRTEYTNIFGRARWPNAPQRALV 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPFF++WK++P HENE+NQP+IGRSTI+G EK+I R G VPN+TTTGDI+SM M+AG+G
Sbjct: 241 TPFFNDWKSLPPHENEINQPVIGRSTINGEEKEIRRFGGPVPNMTTTGDIESMAMYAGQG 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 300
VGLI+EI PA EV+K+LVEGAQ L+ +F+GL
Sbjct: 301 VGLIKEIWPASEVIKRLVEGAQQLIRGEFAGL 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697982|ref|NP_568988.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|13878127|gb|AAK44141.1|AF370326_1 putative 2-nitropropane dioxygenase [Arabidopsis thaliana] gi|9759401|dbj|BAB09856.1| 2-nitropropane dioxygenase-like protein [Arabidopsis thaliana] gi|17104799|gb|AAL34288.1| putative 2-nitropropane dioxygenase [Arabidopsis thaliana] gi|332010479|gb|AED97862.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/327 (70%), Positives = 269/327 (82%), Gaps = 32/327 (9%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFEYGIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LTE
Sbjct: 2 KGILGFEYGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTE 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------- 116
+PFG+GVVLAFPH+ NIK IL EKVAVLQ+ WG+ S+ELV +AH AGVKV+PQ
Sbjct: 62 KPFGIGVVLAFPHDLNIKTILEEKVAVLQLYWGDCSQELVDDAHFAGVKVIPQVGNVEEA 121
Query: 117 -------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151
DGL SLLP VVDL+G+RDIP+IAAGGIVD RGYVA
Sbjct: 122 RKAVAVGVDAIIVQGREAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDGRGYVA 181
Query: 152 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 211
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKL+E +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLIEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 212 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 271
F +W+++PAHENEVNQPIIGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAHENEVNQPIIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 272 IREILPAGEVVKQLVEGAQLLVHTKFS 298
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357460979|ref|XP_003600771.1| 2-nitropropane dioxygenase-like protein [Medicago truncatula] gi|355489819|gb|AES71022.1| 2-nitropropane dioxygenase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/330 (68%), Positives = 270/330 (81%), Gaps = 32/330 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGI+QAPLGPDISGP+LVAAVANAG LGLLRAPDWE+PDYLR+LI++TR+
Sbjct: 1 MGWRGLLGFEYGIIQAPLGPDISGPQLVAAVANAGALGLLRAPDWESPDYLRELIKQTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFG+G+VLAFPH EN+K IL EKVAVLQ WG+ + ELV +AHSAGVK+VP
Sbjct: 61 LTDKPFGIGLVLAFPHEENLKVILDEKVAVLQTYWGDCTTELVAKAHSAGVKIVPQVGSF 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
QD LISL+P VVDL+GDRDIP+IAAGGIVD RG
Sbjct: 121 ESAKQAIDAGADGIILQGREAGGHVIGQDNLISLVPRVVDLVGDRDIPVIAAGGIVDGRG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGAQG+CLGTRF+A+EES AHP YKRKLVE+++TEYTDVFGRARWP APHRVLQ
Sbjct: 181 YVAALALGAQGVCLGTRFLATEESNAHPIYKRKLVELNETEYTDVFGRARWPDAPHRVLQ 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPFF +W+++PAHE+E NQP+IG STIHG+EK+I R AGTVPN+TTTGD++SM M+AG+
Sbjct: 241 TPFFKDWRSLPAHESEANQPVIGHSTIHGVEKEIRRFAGTVPNMTTTGDLESMCMYAGQS 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
VGLI+EIL AGEV+K+LVEGAQ ++ F
Sbjct: 301 VGLIKEILTAGEVIKRLVEGAQHIIQQNFK 330
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569764|ref|XP_002525846.1| 2-nitropropane dioxygenase precursor, putative [Ricinus communis] gi|223534851|gb|EEF36540.1| 2-nitropropane dioxygenase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/330 (70%), Positives = 267/330 (80%), Gaps = 32/330 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LG EYGIVQAPLGPDISGPELVAAVANAGGLG LRAPDWE+PDYLR LIRKTR+
Sbjct: 1 MGWKGILGIEYGIVQAPLGPDISGPELVAAVANAGGLGFLRAPDWESPDYLRGLIRKTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFGVGV+LAFPH EN+KAIL EKVA LQV WG+ SEELVL+AH GVKVVP
Sbjct: 61 LTDKPFGVGVILAFPHEENVKAILDEKVAFLQVYWGDCSEELVLQAHQVGVKVVPQVGSY 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
Q+GLISLLP VVDL+GDR IP+IAAGGIVDARG
Sbjct: 121 EDAKKAINVGVDAIILQGREAGGHVIGQEGLISLLPRVVDLVGDRGIPVIAAGGIVDARG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGA+G+CLGTRFVA+EESYAHP YKRKLVE++KTEYT+VFGRARWP AP R L
Sbjct: 181 YVAALALGAKGVCLGTRFVATEESYAHPTYKRKLVELNKTEYTNVFGRARWPNAPQRALV 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPFF++WK +P HE+EVNQPIIGRSTI+G EK+I R G VPN+T TGDI+SM M+AG+G
Sbjct: 241 TPFFNDWKALPPHESEVNQPIIGRSTINGEEKEIRRFGGPVPNMTATGDIESMAMYAGQG 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
VGLI EILPA EVVK+LVEGAQ L+ +FS
Sbjct: 301 VGLINEILPACEVVKRLVEGAQRLIQQEFS 330
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797437|ref|XP_002866603.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] gi|297312438|gb|EFH42862.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/327 (70%), Positives = 270/327 (82%), Gaps = 32/327 (9%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFE+GIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LT+
Sbjct: 2 KGILGFEHGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTD 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------- 116
+PFG+GVVLAFPH+ NIKAIL EKVAVLQ+ WG+ S+ELV +AH AG+KVVPQ
Sbjct: 62 KPFGIGVVLAFPHDLNIKAILEEKVAVLQLYWGDCSQELVDDAHRAGLKVVPQVGNVEEA 121
Query: 117 -------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151
DGL SLLP VVDL+G+RDIP+IAAGGIVDARGYVA
Sbjct: 122 RKAVAVGVDAIIVQGHEAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDARGYVA 181
Query: 152 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 211
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKLVE +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLVEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 212 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 271
F +W+++PA ENEVNQP+IGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAGENEVNQPVIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 272 IREILPAGEVVKQLVEGAQLLVHTKFS 298
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797441|ref|XP_002866605.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] gi|297312440|gb|EFH42864.1| 2-nitropropane dioxygenase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/327 (70%), Positives = 270/327 (82%), Gaps = 32/327 (9%)
Query: 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE 63
+G+LGFE+GIVQAPLGPDISGPELVAAVANAGG+GLLR PDWE PDYLR+LIRKT++LT+
Sbjct: 2 KGILGFEHGIVQAPLGPDISGPELVAAVANAGGIGLLRCPDWECPDYLRELIRKTKTLTD 61
Query: 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------- 116
+PFG+GVVLAFPH+ NIKAIL E+VAVLQ+ WG+ S+ELV +AH AG+KVVPQ
Sbjct: 62 KPFGIGVVLAFPHDLNIKAILEEEVAVLQLYWGDCSQELVDDAHRAGLKVVPQVGNVEEA 121
Query: 117 -------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151
DGL SLLP VVDL+G+RDIP+IAAGGIVDARGYVA
Sbjct: 122 RKAVAVGVDAIIVQGHEAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDARGYVA 181
Query: 152 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPF 211
ALSLGAQG+CLGTRFVA+ ESYAHP YKRKLVE +KTEYTDVFGRARWPGAP RVL+TPF
Sbjct: 182 ALSLGAQGVCLGTRFVATHESYAHPIYKRKLVEYEKTEYTDVFGRARWPGAPQRVLETPF 241
Query: 212 FSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGL 271
F +W+++PA ENEVNQP+IGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGL
Sbjct: 242 FDDWRSLPAGENEVNQPVIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGL 301
Query: 272 IREILPAGEVVKQLVEGAQLLVHTKFS 298
I+EILPAGEVVK LVE AQ L+ KF+
Sbjct: 302 IKEILPAGEVVKSLVEEAQALILQKFN 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525868|ref|XP_003531543.1| PREDICTED: probable nitronate monooxygenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/330 (68%), Positives = 268/330 (81%), Gaps = 32/330 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGWRG+LGFEYGIVQAPLGPDIS P LVAAVANAG LGLLRAPDWE+PDYLR+LI+ TR+
Sbjct: 1 MGWRGILGFEYGIVQAPLGPDISAPPLVAAVANAGALGLLRAPDWESPDYLRELIKTTRT 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFGVGVVLAFP EN+ IL EKVAVLQV WG+ + ELV +AHSAG+KVVP
Sbjct: 61 LTDKPFGVGVVLAFPFEENLNVILEEKVAVLQVYWGDCTRELVNKAHSAGIKVVPQVGNI 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
QDGLI+L+P VVDL+GDR+IP+IAAGGIVDARG
Sbjct: 121 EGAKQAIEAGADGIIVQGLEAGGHVIGQDGLITLVPRVVDLVGDREIPVIAAGGIVDARG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGAQG+CLGTRF+A+EES AHP YKRKL+E+D+T YTDVFGRARWPGAP RVLQ
Sbjct: 181 YVAALALGAQGVCLGTRFLATEESNAHPTYKRKLLELDETAYTDVFGRARWPGAPQRVLQ 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPF+ W+++P HE+E N+P+IG STI+G++K+I R AGTVPN TTTGD++SMVM+AG+G
Sbjct: 241 TPFYKEWRSLPPHESEANKPVIGHSTINGVDKEIRRFAGTVPNKTTTGDLESMVMYAGQG 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
VGLI+EILPAGEVVK+LVEGAQL++ F
Sbjct: 301 VGLIKEILPAGEVVKRLVEGAQLIMQQNFK 330
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438207|ref|XP_004136881.1| PREDICTED: probable nitronate monooxygenase-like [Cucumis sativus] gi|449478857|ref|XP_004155436.1| PREDICTED: probable nitronate monooxygenase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/332 (65%), Positives = 271/332 (81%), Gaps = 32/332 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MG+ G+LGF+YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE+PDY+R+LIRKTR+
Sbjct: 1 MGFGGLLGFQYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYVRELIRKTRA 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFG+GV+LAFPH +N+KAIL EKVAV+QV WGE S++LV + HSAGVK++P
Sbjct: 61 LTDKPFGIGVILAFPHEQNLKAILDEKVAVVQVYWGECSKDLVDQVHSAGVKIIPQVGSV 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
Q+GLIS+LP VV+++GD+DIP+IAAG I D+RG
Sbjct: 121 EEASKAVDVGVDAIIVQGREAGGHVIGQEGLISILPRVVEIVGDKDIPVIAAGSISDSRG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGA+G+CLGTRFVA+EES AHP YKRKLVE++ T+YT++FGRARWPGAP RVLQ
Sbjct: 181 YVAALALGARGVCLGTRFVATEESNAHPTYKRKLVELEATDYTNIFGRARWPGAPQRVLQ 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPF+ +WK++PA+ENE NQP+IGRSTI+G++ I R AGTVPN TT GDI+SM M+AG+G
Sbjct: 241 TPFYDDWKSLPANENESNQPVIGRSTINGLDIDIRRFAGTVPNATTKGDIESMAMYAGQG 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 300
VGLI+EILPAGEVV++LVEGAQ L+ T S
Sbjct: 301 VGLIKEILPAGEVVRRLVEGAQHLIRTHLSSF 332
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906458|gb|ACJ11722.1| 2-nitropropane dioxygenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/330 (64%), Positives = 262/330 (79%), Gaps = 32/330 (9%)
Query: 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60
MGW+G+LGF+YGIV AP+G DI+GPELVAAVANAG L LL AP+W++P+ L++LIRKTR
Sbjct: 1 MGWKGILGFDYGIVLAPMGHDIAGPELVAAVANAGALALLHAPEWDSPEQLKELIRKTRE 60
Query: 61 LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP----- 115
LT++PFGVGV+L FPH ENIKAIL EKVAVLQV+WGE S+ELVLEAH+AGV VVP
Sbjct: 61 LTDKPFGVGVLLPFPHKENIKAILEEKVAVLQVAWGECSKELVLEAHNAGVMVVPQVGSL 120
Query: 116 ---------------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148
QDGLISLLP VVD + D DIP+IAAGGIVDARG
Sbjct: 121 EEAKKVIDAGVDAIIVQGHEAGGHVLGQDGLISLLPRVVDAVADHDIPVIAAGGIVDARG 180
Query: 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 208
YVAAL+LGA+GIC+GTRF+A+ ESYAHP YK+KL+E D+TEYTD+FGRA WPGAP RVL+
Sbjct: 181 YVAALALGAKGICMGTRFLATRESYAHPTYKQKLIEHDETEYTDIFGRALWPGAPQRVLR 240
Query: 209 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 268
TPF +WK++PAHENE NQP+IGRS IHG+E +I R + + PN TTTG+I++M ++AG+
Sbjct: 241 TPFVCDWKSLPAHENESNQPVIGRSLIHGMETEIQRFSASDPNPTTTGEIENMALYAGQS 300
Query: 269 VGLIREILPAGEVVKQLVEGAQLLVHTKFS 298
VGLI+EILPAGEVVK+LVEGAQ L+ +F+
Sbjct: 301 VGLIKEILPAGEVVKRLVEGAQHLIRQRFN 330
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| TAIR|locus:2173413 | 333 | AT5G64250 [Arabidopsis thalian | 0.663 | 0.597 | 0.728 | 6.6e-121 | |
| UNIPROTKB|Q3AC53 | 314 | fabK "Enoyl-(Acyl-carrier-prot | 0.57 | 0.544 | 0.314 | 3.6e-27 | |
| TIGR_CMR|CHY_1449 | 314 | CHY_1449 "enoyl-(acyl-carrier- | 0.57 | 0.544 | 0.314 | 3.6e-27 | |
| UNIPROTKB|Q0BYH8 | 325 | HNE_2786 "Trans-2-enoyl-ACP re | 0.573 | 0.529 | 0.326 | 5.1e-19 | |
| TIGR_CMR|BA_1385 | 364 | BA_1385 "2-nitropropane dioxyg | 0.253 | 0.208 | 0.363 | 1.9e-13 | |
| ASPGD|ASPL0000013469 | 356 | AN4268 [Emericella nidulans (t | 0.636 | 0.536 | 0.310 | 1.5e-12 | |
| ASPGD|ASPL0000003754 | 353 | AN5854 [Emericella nidulans (t | 0.546 | 0.464 | 0.306 | 2.6e-12 | |
| UNIPROTKB|Q0BX33 | 312 | fabK "Trans-2-enoyl-ACP reduct | 0.343 | 0.330 | 0.357 | 1.3e-11 | |
| UNIPROTKB|P71847 | 355 | Rv3553 "POSSIBLE OXIDOREDUCTAS | 0.406 | 0.343 | 0.356 | 1.5e-11 | |
| ASPGD|ASPL0000014162 | 380 | AN4120 [Emericella nidulans (t | 0.556 | 0.439 | 0.316 | 3.3e-11 |
| TAIR|locus:2173413 AT5G64250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 6.6e-121, Sum P(2) = 6.6e-121
Identities = 145/199 (72%), Positives = 175/199 (87%)
Query: 100 EELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159
+ ++++ AG V+ +DGL SLLP VVDL+G+RDIP+IAAGGIVD RGYVAALSLGAQG
Sbjct: 130 DAIIVQGREAGGHVIGKDGLFSLLPRVVDLVGERDIPVIAAGGIVDGRGYVAALSLGAQG 189
Query: 160 ICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIP 219
+CLGTRFVA+ ESYAHP YKRKL+E +KTEYTDVFGRARWPGAP RVL+TPFF +W+++P
Sbjct: 190 VCLGTRFVATHESYAHPIYKRKLIEYEKTEYTDVFGRARWPGAPQRVLETPFFDDWRSLP 249
Query: 220 AHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAG 279
AHENEVNQPIIGRSTIHG+EK+I R +GTVPN+TTTGD++SM M+AG+ VGLI+EILPAG
Sbjct: 250 AHENEVNQPIIGRSTIHGVEKEIRRFSGTVPNMTTTGDLESMAMYAGQSVGLIKEILPAG 309
Query: 280 EVVKQLVEGAQLLVHTKFS 298
EVVK LVE AQ L+ KF+
Sbjct: 310 EVVKSLVEEAQALILQKFN 328
|
|
| UNIPROTKB|Q3AC53 fabK "Enoyl-(Acyl-carrier-protein) reductase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 60/191 (31%), Positives = 103/191 (53%)
Query: 100 EELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159
+ ++ E H +G + + ++L+P VVD + IP++AAGGI D RG VAAL+LGAQ
Sbjct: 132 DAVIAEGHESGGHI-GELTTMALVPQVVDNVS---IPVVAAGGIADGRGLVAALALGAQA 187
Query: 160 ICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIP 219
+ +GTRF+ +EE+ HP K +++ + T + G + G P RV++ + +
Sbjct: 188 VQIGTRFLCAEETEIHPAVKEAVIKAGDRD-TVITGAST--GHPVRVIKNKLARRFLEL- 243
Query: 220 AHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAG 279
E + P +EK AG++ GDI+ + AG+ GLI+EI P
Sbjct: 244 --EQKGAPP-------EELEKLG---AGSLRRCMQEGDIEEGSLMAGQIAGLIKEIKPVK 291
Query: 280 EVVKQLVEGAQ 290
E++++++ A+
Sbjct: 292 EIIEEIMHEAR 302
|
|
| TIGR_CMR|CHY_1449 CHY_1449 "enoyl-(acyl-carrier-protein) reductase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 60/191 (31%), Positives = 103/191 (53%)
Query: 100 EELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159
+ ++ E H +G + + ++L+P VVD + IP++AAGGI D RG VAAL+LGAQ
Sbjct: 132 DAVIAEGHESGGHI-GELTTMALVPQVVDNVS---IPVVAAGGIADGRGLVAALALGAQA 187
Query: 160 ICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIP 219
+ +GTRF+ +EE+ HP K +++ + T + G + G P RV++ + +
Sbjct: 188 VQIGTRFLCAEETEIHPAVKEAVIKAGDRD-TVITGAST--GHPVRVIKNKLARRFLEL- 243
Query: 220 AHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAG 279
E + P +EK AG++ GDI+ + AG+ GLI+EI P
Sbjct: 244 --EQKGAPP-------EELEKLG---AGSLRRCMQEGDIEEGSLMAGQIAGLIKEIKPVK 291
Query: 280 EVVKQLVEGAQ 290
E++++++ A+
Sbjct: 292 EIIEEIMHEAR 302
|
|
| UNIPROTKB|Q0BYH8 HNE_2786 "Trans-2-enoyl-ACP reductase II" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 60/184 (32%), Positives = 93/184 (50%)
Query: 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 177
GL+ +P+V + IP+IAAGGI D RG A+L+LGAQG+ +GTRF+AS E++A
Sbjct: 149 GLVGTMPLVAQAVEAVKIPVIAAGGIYDGRGLAASLALGAQGVWMGTRFIASAEAHAAGM 208
Query: 178 YKRKLVEMDKTEYTDVFGRAR-WPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIH 236
YK +V T+ T R R + G P R + +W++ P I ST
Sbjct: 209 YKDAVVTAGDTDTT----RTRCYSGKPMRCRTNDYIDDWESRPQDIKPFPFQAI-HSTQT 263
Query: 237 GIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTK 296
G+ I + G + D M G+ G ++E+ P E+V ++ A+ + T+
Sbjct: 264 GV---IGGIGGITDEAKLSMDKSCFAM--GQSAGGVKEVKPVAEIVADIMRDAEATI-TR 317
Query: 297 FSGL 300
+GL
Sbjct: 318 MAGL 321
|
|
| TIGR_CMR|BA_1385 BA_1385 "2-nitropropane dioxygenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 116 QDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 174
QD +I ++ L+ IPI+A GG+++ +G VAA +LGA+ + +G+ F+ SEES
Sbjct: 190 QDAMIGTFALIPQLVAAVPHIPIVAVGGVMNGQGLVAAFTLGAEAVQMGSAFLTSEESIT 249
Query: 175 HPEYKRKLVEMDKTEYT 191
H YK ++ T T
Sbjct: 250 HDVYKEAVLHSTDTSTT 266
|
|
| ASPGD|ASPL0000013469 AN4268 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 68/219 (31%), Positives = 109/219 (49%)
Query: 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG-LISLLPMVVDLIGDRD----IPII 138
+SE VAV + + LV++ AG + +I+L+P V D + R IPII
Sbjct: 146 VSEAVAVAE---SLSPDALVVQGSDAGGHGLTNSASIITLVPEVKDALEARQLRDHIPII 202
Query: 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD----KTEYTDVF 194
AAGGIVD RG A+L LGA G +GTRF+AS E+ Y+ +++ T + V+
Sbjct: 203 AAGGIVDGRGLAASLVLGASGAAMGTRFLASSEARIARGYQDEVLRASDGGVSTVRSTVY 262
Query: 195 GRARWPGAPHRVLQTPFFSNWKNI--PAHENEVNQPIIGRSTIHGIEKKIHRL-AGTVPN 251
R R G +L P + + + + + V + + E+++ + +G PN
Sbjct: 263 DRVR--G----ILSWPSRYDGRGVINQTYIDAVERGMSDEENKALYEEELKKGDSGWGPN 316
Query: 252 VTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQ 290
T +AG G+GL+REILPA ++V ++ A+
Sbjct: 317 ARLT-------TYAGTGLGLVREILPAADIVANVIREAE 348
|
|
| ASPGD|ASPL0000003754 AN5854 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 56/183 (30%), Positives = 91/183 (49%)
Query: 120 ISLLPMVVDLIGDRDIP-------IIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
+ L+P V +L+ + P ++AAGG+ + + AAL LGA + +GTRF+ SEES
Sbjct: 175 VVLIPAVAELLRGKISPFTRSQVALVAAGGMYNGQSLAAALMLGAGAVWVGTRFILSEES 234
Query: 173 YAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGR 232
A +++ L E + D+ + G P TP+ W+N + E+ Q + GR
Sbjct: 235 GASRVHQKALQEAG---FDDIIRTTIFSGRPLNTQATPYIKRWEN--ERKQEM-QDLQGR 288
Query: 233 STIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLL 292
GI H + + + M+M G+ GL+RE LPA ++V+ +VE A L
Sbjct: 289 ----GIIPLAHDMDTKKDDDEVLDNAHPMLM--GKVAGLVRERLPAAKIVESMVEEAAAL 342
Query: 293 VHT 295
+ T
Sbjct: 343 LET 345
|
|
| UNIPROTKB|Q0BX33 fabK "Trans-2-enoyl-ACP reductase II" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/109 (35%), Positives = 58/109 (53%)
Query: 102 LVLEA-HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160
L++E G K + L+P V + + +P++AAGGI D R AA SLGA+G+
Sbjct: 139 LIVEGGEGGGFKNAKDVASMVLIPQVCEAVS---VPVVAAGGITDGRSMAAAFSLGAEGV 195
Query: 161 CLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQT 209
+GTR ++ ES H +K ++ D T+ T RA PG R L+T
Sbjct: 196 LMGTRILSCAESPVHANWKDAIIGADATD-TVFLNRAG-PGPALRALRT 242
|
|
| UNIPROTKB|P71847 Rv3553 "POSSIBLE OXIDOREDUCTASE" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 47/132 (35%), Positives = 70/132 (53%)
Query: 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA 139
I +I + K A +WG ++ ++++ G P + LLP V+D + IP+IA
Sbjct: 116 IPSIGAAKHARKVAAWG--ADAMIVQGGEGGGHTGPVATTL-LLPSVLDAVAGTGIPVIA 172
Query: 140 AGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE--MDKTEYTDVFGRA 197
AGG D RG AAL GA G+ +GTRF+ + +S KR+ ++ +D T T
Sbjct: 173 AGGFFDGRGLAAALCYGAAGVAMGTRFLLTSDSTVPDAVKRRYLQAGLDGTVVT-----T 227
Query: 198 RWPGAPHRVLQT 209
R G PHRVL+T
Sbjct: 228 RVDGMPHRVLRT 239
|
|
| ASPGD|ASPL0000014162 AN4120 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 63/199 (31%), Positives = 96/199 (48%)
Query: 100 EELVLEAHSAGVKVVPQDGL--ISLLPMVVDLIGDR---DIPIIAAGGIVDARGYVAALS 154
+ +V++ AG DGL +SLLP D + +IP++AAGGI D RG AAL
Sbjct: 163 DAIVVQGSEAGGHGRASDGLGLVSLLPEAADAVAASQTPEIPLLAAGGIADTRGASAALC 222
Query: 155 LGAQGICLGTRFVASEESYAHPEYKRKLVEMD----KTEYTDVFGRAR----WPG--APH 204
LGA GI LGTRF+A+ E+ Y+ +++ D T T ++ R WP +P
Sbjct: 223 LGASGIVLGTRFLAATEARISSGYQHEILRADDGAVSTTRTLLYNHLRGITTWPEEYSPR 282
Query: 205 RVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMF 264
++ F ++ A E E+ + H ++ AG PN + +
Sbjct: 283 TIINQSFVE-YRAGTAFE-ELKKR-------HDEHLQLGD-AGWGPN-------GRLATY 325
Query: 265 AGEGVGLIREILPAGEVVK 283
AG VGLI E+ AG++V+
Sbjct: 326 AGASVGLIHEVKDAGDIVR 344
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.13.12.16 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.13.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 300 | |||
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 5e-52 | |
| TIGR03151 | 307 | TIGR03151, enACPred_II, putative enoyl-[acyl-carri | 9e-44 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 1e-42 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 2e-42 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 0.001 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 0.003 | |
| cd04743 | 320 | cd04743, NPD_PKS, 2-Nitropropane dioxygenase (NPD) | 0.004 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 5e-52
Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 49/236 (20%)
Query: 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVG 69
Y I+QAP+ +S PEL AAV+NAGGLG + A P+ LR IRK R+LT++PFGV
Sbjct: 2 RYPIIQAPMAG-VSTPELAAAVSNAGGLGFIGAGYLT-PEALRAEIRKIRALTDKPFGVN 59
Query: 70 VVLAFPHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ---------- 116
+++ + ++ L E V V+ S+G E+V +AG+KV+P
Sbjct: 60 LLVPSSNPDFEALLEVALEEGVPVVSFSFGP-PAEVVERLKAAGIKVIPTVTSVEEARKA 118
Query: 117 -----DGLI------------------SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153
D L+ +L+P V D + DIP+IAAGGI D RG AAL
Sbjct: 119 EAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAAL 175
Query: 154 SLGAQGICLGTRFVASEESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVL 207
+LGA G+ +GTRF+A+EES A P YK+ L+ + T T F G P R L
Sbjct: 176 ALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRAF-----SGRPARGL 226
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 9e-44
Identities = 100/324 (30%), Positives = 156/324 (48%), Gaps = 60/324 (18%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+LG EY I Q + ++ L AAV+NAGGLG++ A + PD +R IRK + LT++P
Sbjct: 7 LLGIEYPIFQGGMAW-VATGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKP 64
Query: 66 FGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAGVKVVP------ 115
FGV ++L P + + ++ EKV V+ G +Y L GVKV+P
Sbjct: 65 FGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPGKYIPRL----KENGVKVIPVVASVA 120
Query: 116 ---------QDGLI----------------SLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150
D +I +L+P VVD + IP+IAAGGI D RG
Sbjct: 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV---SIPVIAAGGIADGRGMA 177
Query: 151 AALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTP 210
AA +LGA+ + +GTRF+ ++E HP YK K++ K + D G P RVL+
Sbjct: 178 AAFALGAEAVQMGTRFLCAKECNVHPNYKEKVL---KAKDRDTVVTGASTGHPVRVLKNK 234
Query: 211 FFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVG 270
+ + ++ EK AG + GD+++ + AG+ G
Sbjct: 235 L----------TRKYQELEKEGASPEEFEK---LGAGALRRAVVEGDVENGSVMAGQIAG 281
Query: 271 LIREILPAGEVVKQLVEGAQLLVH 294
LI+EI PA E+++ ++ A+ ++
Sbjct: 282 LIKEIKPAKEIIEDIMSEAKEVIK 305
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. Length = 307 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-42
Identities = 101/339 (29%), Positives = 153/339 (45%), Gaps = 68/339 (20%)
Query: 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER 64
+LG +Y I+Q + +S PEL AAV+NAGGLG++ + + LR IRK R+LT++
Sbjct: 9 LLLGIKYPIIQGGMAG-VSTPELAAAVSNAGGLGIIASGGLP-AEQLRAEIRKIRALTDK 66
Query: 65 PFGVGV------VLAFPHN--------ENIKAILSE-KVAVLQVSWGEYSEELVLEAHSA 109
PF + + AI+ V V+ S+G E V +A
Sbjct: 67 PFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAA 126
Query: 110 GVKVVPQ---------------DGLI--------------------SLLPMVVDLIGDRD 134
G+KV+ D +I +L+P VVD +
Sbjct: 127 GIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DG 184
Query: 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVF 194
IP+IAAGGI D RG AAL+LGA G+ +GTRF+A++E+ A YK+ L++ + T +
Sbjct: 185 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQA-TEDDTVLT 243
Query: 195 GRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTT 254
G P RVL+ P + E P + ++ +
Sbjct: 244 KSFT--GKPARVLRNPLT---EEYEDPERAPKAP-LLYPEEGKKVGQLRKAVA------- 290
Query: 255 TGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLV 293
GD D ++AG+G GLI +I A +V++ LVE A+ L
Sbjct: 291 LGDADKGNVWAGQGFGLINDIPTAADVIRSLVEEAKELT 329
|
Length = 336 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-42
Identities = 104/348 (29%), Positives = 153/348 (43%), Gaps = 88/348 (25%)
Query: 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER 64
+L +Y IVQ P+ IS PEL AAV+ AGGLG++ + PD L IRK R LT++
Sbjct: 6 DLLEIKYPIVQPPMA-GISTPELAAAVSEAGGLGVI-GSGYLTPDRLEKEIRKVRELTDK 63
Query: 65 PFGVGVVL-----------------AFPHNENIKA-----------ILSEKVAVLQVSWG 96
PFGV + L I+ + K V+ +G
Sbjct: 64 PFGVNLFLPQPAEGDDFALDVKEHGNEALKLAIEEGVPDYGDDDDSLKDAKPKVVSFGFG 123
Query: 97 EYSEELVLEAHSAGVKVVPQ---------------DGLI-------------------SL 122
E+++ +G KV+P D ++ L
Sbjct: 124 LPPEDVIERLKESGTKVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLL 183
Query: 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182
+P VVD + DIP+IAAGGI D RG AAL+LGA+G+ +GTRF+A++E+ AHP +K+K+
Sbjct: 184 VPTVVDAV---DIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKEADAHPVHKQKI 240
Query: 183 VE--MDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEK 240
++ D T T F G P RVL+TPF ++E +
Sbjct: 241 LKATEDDTVVTRAFS-----GRPARVLRTPFTREL-----EQSEAPLG---------YPE 281
Query: 241 KIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 288
G GD + ++ G+ GLI EIL E+++ LV+
Sbjct: 282 APLMAKGLRAAAVQGGDREEGFLWVGQVAGLIDEILSVKELIEDLVQE 329
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 109 AGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168
GV V PQ + + V D +P+IA GGI + V AL+ GA + LG+
Sbjct: 176 TGVGV-PQ---ATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAG 231
Query: 169 SEES 172
++ES
Sbjct: 232 TDES 235
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 114 VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172
VPQ I+ + V + IP+IA GGI + V AL+ GA + LG+ + ES
Sbjct: 310 VPQ---ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES 365
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|240094 cd04743, NPD_PKS, 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 54/256 (21%), Positives = 95/256 (37%), Gaps = 62/256 (24%)
Query: 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGV 68
Y IVQ P+ E AVA GGL + A + ++ L+ +T L ++P+GV
Sbjct: 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFI-ALALMRGEQVKALLEETAELLGDKPWGV 60
Query: 69 GVVLAFPHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV---VPQDGLI-- 120
G++ + + + K ++ G + LEA G+ VP GL+
Sbjct: 61 GILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEA--IGISTYLHVPSPGLLKQ 118
Query: 121 ------------------------------SLLPMVVDLIGDR---DIPIIAAGGIVDAR 147
S + ++ G I ++ AGGI D R
Sbjct: 119 FLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDER 178
Query: 148 --GYVAALSLG------AQGICLGTRFVASEESYAH----PEYKRKLVEMDKTEYTDVFG 195
V+AL+ G+ +GT ++ +EE+ + P ++ + + +T
Sbjct: 179 SAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALL---- 234
Query: 196 RARWPGAPHRVLQTPF 211
PG R + +PF
Sbjct: 235 -ETGPGHATRCVVSPF 249
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 320 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 100.0 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 100.0 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 100.0 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 100.0 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 100.0 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 100.0 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.92 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.92 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.91 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.91 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.83 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.82 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.79 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.78 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.78 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.76 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.72 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.71 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.7 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.69 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.68 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.63 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.62 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 99.61 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.59 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.51 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.48 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.48 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.48 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.47 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.46 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.45 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.37 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.36 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.33 | |
| PLN02535 | 364 | glycolate oxidase | 99.26 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.26 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.26 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.25 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.24 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 99.22 | |
| PLN02979 | 366 | glycolate oxidase | 99.22 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.21 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.2 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.2 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.2 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.18 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.18 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.17 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.17 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.17 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.16 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.14 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.13 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.09 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.08 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.05 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.03 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 98.99 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 98.96 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 98.94 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 98.93 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.92 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 98.91 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.91 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 98.86 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.84 | |
| PLN02591 | 250 | tryptophan synthase | 98.81 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.8 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.8 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.79 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.79 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 98.78 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.75 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.74 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.74 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.72 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.71 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.65 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 98.64 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.61 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 98.6 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.57 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.57 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.56 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.56 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.54 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.54 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.51 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.47 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.46 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.45 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.43 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.42 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.42 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 98.4 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.39 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 98.38 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.38 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.38 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.37 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.35 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.33 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.3 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.28 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.27 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.25 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.25 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.24 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.24 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.22 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.22 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.2 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.19 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.16 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.15 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.14 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.11 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.09 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.08 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.05 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.05 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 98.01 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.01 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.99 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 97.98 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.97 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.96 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.93 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.92 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.9 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.88 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.88 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 97.87 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.86 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.85 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.84 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.83 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 97.83 | |
| PRK08005 | 210 | epimerase; Validated | 97.83 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.82 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.81 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.81 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.76 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.76 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.75 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.75 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.74 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.7 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.69 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.68 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.67 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.66 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.65 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.65 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.64 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.63 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.63 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.63 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.63 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.63 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.62 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.6 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 97.59 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.58 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.57 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.57 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.54 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.52 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.5 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.48 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.47 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.46 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.45 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.45 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 97.44 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.42 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.41 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.41 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.37 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 97.36 | |
| PRK14057 | 254 | epimerase; Provisional | 97.3 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 97.25 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.23 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.22 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.21 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.21 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.2 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.2 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.19 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.19 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.19 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.18 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.18 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.16 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 97.15 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.15 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.15 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.13 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 97.1 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.07 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.05 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.05 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 97.04 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.02 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 97.01 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.96 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.95 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 96.92 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 96.92 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.91 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.91 | |
| PLN02535 | 364 | glycolate oxidase | 96.89 | |
| PLN02979 | 366 | glycolate oxidase | 96.82 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 96.82 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 96.82 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.78 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.78 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.78 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 96.72 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 96.7 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.67 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 96.66 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 96.63 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 96.63 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.6 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 96.56 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 96.55 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.55 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 96.53 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.53 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.5 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.49 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.47 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 96.44 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.43 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.43 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.42 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 96.37 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 96.36 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 96.3 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.29 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 96.21 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.17 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 96.11 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.08 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 96.07 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.07 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 95.8 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.8 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 95.76 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 95.69 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 95.61 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 95.6 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 95.59 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 95.56 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 95.54 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 95.39 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 95.26 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.13 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 95.12 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 95.1 | |
| PRK06852 | 304 | aldolase; Validated | 95.09 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 95.05 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 94.99 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 94.93 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.93 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 94.69 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 94.63 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 94.54 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 94.42 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 94.41 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 94.26 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 94.21 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 93.88 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 93.85 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 93.72 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 93.63 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 93.5 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.49 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.46 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 93.33 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 93.29 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 93.19 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 93.17 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 93.12 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.11 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 92.88 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 92.85 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 92.78 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 92.75 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 92.7 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.68 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 92.54 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 92.53 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.26 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 92.22 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 92.21 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 91.69 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 91.56 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.53 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 91.51 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 91.39 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 91.26 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 91.26 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 91.22 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 91.15 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 91.14 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 91.12 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 91.11 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 91.05 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 91.03 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 91.01 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 90.71 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 90.47 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 90.47 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 90.43 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 90.4 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 90.3 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 90.23 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 90.18 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 90.14 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.09 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 90.07 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 90.03 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 89.65 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.56 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 89.29 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 89.27 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.17 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 89.14 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 89.09 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 89.05 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 89.01 | |
| cd02070 | 201 | corrinoid_protein_B12-BD B12 binding domain of cor | 88.64 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 88.6 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 88.31 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 88.26 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 88.16 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 88.06 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 87.66 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 87.57 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 87.56 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 87.5 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 87.05 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 86.98 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 86.88 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 86.71 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 86.21 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 86.04 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 85.82 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 85.65 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 85.48 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 85.11 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 84.81 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 84.62 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 84.48 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 83.79 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 83.77 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 83.51 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 83.42 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 83.39 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 83.37 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 83.3 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 83.23 | |
| cd02069 | 213 | methionine_synthase_B12_BD B12 binding domain of m | 82.91 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 82.39 | |
| TIGR01417 | 565 | PTS_I_fam phosphoenolpyruvate-protein phosphotrans | 82.2 | |
| KOG4202 | 227 | consensus Phosphoribosylanthranilate isomerase [Am | 82.06 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 82.0 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 81.9 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 81.73 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 81.55 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 81.51 | |
| PF13941 | 457 | MutL: MutL protein | 81.4 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 81.21 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 81.01 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 80.69 | |
| TIGR02370 | 197 | pyl_corrinoid methyltransferase cognate corrinoid | 80.49 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 80.47 | |
| PLN02623 | 581 | pyruvate kinase | 80.34 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 80.26 |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=421.35 Aligned_cols=266 Identities=44% Similarity=0.741 Sum_probs=193.7
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHH---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNE--- 78 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~--- 78 (300)
.|+++|||+|||||+||+ ++|+++||+|||||||+|+|+++ +.++++++++|+++|++|++||+||++.+.+...
T Consensus 3 ~~t~~lgi~~PIiqapM~-~is~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~ 80 (330)
T PF03060_consen 3 RLTELLGIKYPIIQAPMG-GISTPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEE 80 (330)
T ss_dssp HHHHHHT-SSSEEE---T-TTSSHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-
T ss_pred hHHHHhCCCcCEEcCCCC-CCChHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhh
Confidence 378999999999999998 79999999999999999999975 7899999999999999999999999998765311
Q ss_pred ----------HHHHHHH--------------cCCcEEEEcCCCCcHHHHHHHHHCCCeEeec------------------
Q 022271 79 ----------NIKAILS--------------EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------------------ 116 (300)
Q Consensus 79 ----------~~~~~~e--------------~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~------------------ 116 (300)
..+.+++ +++++|++++|.|++++++++|++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 81 DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 1334444 4555999999998899999999999999876
Q ss_pred --------------c-ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHH
Q 022271 117 --------------D-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 117 --------------~-~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
. +++.|+|++++.+ ++|||+||||.|+++++++|++|||||||||||++|+||++|+.||++
T Consensus 161 v~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~ 237 (330)
T PF03060_consen 161 VAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQA 237 (330)
T ss_dssp EEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHH
T ss_pred EEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHH
Confidence 1 3789999999998 799999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcceEEEecccCCCCCCCceecChhhHhhhcCCCCcccCCCcccccccccchHHH--HHHhhcccccccccCCcc
Q 022271 182 LVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKK--IHRLAGTVPNVTTTGDID 259 (300)
Q Consensus 182 i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~gd~~ 259 (300)
|++++++++. ... .+.|+|+|+|+|+|+++|... ......+| .++..... +++. +...||.|
T Consensus 238 l~~a~~~dtv-~t~--~~~G~~~R~l~n~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~------~~~~g~~~ 301 (330)
T PF03060_consen 238 LVDATEEDTV-LTR--SFSGRPARVLRNPFTEEWEER--SPAPLPYP-----EQHYLTKDFCLRKA------AKEGGDVE 301 (330)
T ss_dssp HHHGGTT-EE-EES--TTTTS-EEEE-SHHHHHHHHH--HHHHCCCH-----HHHHHHTHHHHHHH------HCCHT-TT
T ss_pred HHhCCCCCEE-EEe--ecccchhhhhCcHHHHHHHhc--ccccccch-----hHHHHhhhhHHHHH------HHhcCCcc
Confidence 9998766632 222 235999999999999998751 11111222 11111222 3221 22337999
Q ss_pred cceeeccccccccCCCCCHHHHHHHHHHH
Q 022271 260 SMVMFAGEGVGLIREILPAGEVVKQLVEG 288 (300)
Q Consensus 260 ~~~~~aGq~~~~i~~i~~a~eiv~~l~~e 288 (300)
++.+|+||++++|+++.|++|||++|++|
T Consensus 302 ~~~~~aGq~~g~i~~i~~a~eiv~~L~~e 330 (330)
T PF03060_consen 302 RGLLWAGQGVGLIKEIRPAAEIVEELVEE 330 (330)
T ss_dssp TS--B--GGGGGG-S-B-HHHHHHHHHHH
T ss_pred ceeEecChhhhhhcCCCcHHHHHHHHHhC
Confidence 99999999999999999999999999987
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=403.90 Aligned_cols=270 Identities=34% Similarity=0.586 Sum_probs=229.8
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHH
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENI 80 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~ 80 (300)
.|+++||++||||||||+ ++|+++|++||||+||+|+|+++ +.++++++++|+++|+++++|||||++...+. .+.+
T Consensus 3 ~l~~~lgi~~Pii~apM~-~~s~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMA-WVATGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred hhhHHhCCCCCEEcCCCC-CCCCHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHH
Confidence 478999999999999998 79999999999999999999985 67999999999999999999999999987665 5678
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHh
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDL 129 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~ 129 (300)
+.++++++++|++++|.| .++++++|+.|++++++ .+++.++|++++.
T Consensus 81 ~~~~~~~v~~v~~~~g~p-~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~ 159 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGNP-GKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDA 159 (307)
T ss_pred HHHHhCCCCEEEEcCCCc-HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH
Confidence 999999999999999875 56999999999998875 1368899999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcc--eEEEecccCCCCCCCcee
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVL 207 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~--~t~~~~~~~~~g~~~R~l 207 (300)
+ ++|||++|||.|+++++++|.+|||||++||+|++|.||.+|+.||++|++++.++ +|..+ +|+|+|+|
T Consensus 160 ~---~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~~~~~~dt~~t~~~-----~G~~~R~l 231 (307)
T TIGR03151 160 V---SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKVLKAKDRDTVVTGAS-----TGHPVRVL 231 (307)
T ss_pred h---CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHHHhCCCCCEEEEecC-----CCCceeee
Confidence 8 79999999999999999999999999999999999999999999999999976655 33332 48999999
Q ss_pred cChhhHhhhcCCCCcccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccccccCCCCCHHHHHHHHHH
Q 022271 208 QTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 287 (300)
Q Consensus 208 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~~l~~ 287 (300)
+|+|+++|.+.+.... ...+ ..+.....++ .+..+||.|++.+|+||++++|+++.|++|||++|++
T Consensus 232 ~n~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~-------~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~ 298 (307)
T TIGR03151 232 KNKLTRKYQELEKEGA-SPEE-----FEKLGAGALR-------RAVVEGDVENGSVMAGQIAGLIKEIKPAKEIIEDIMS 298 (307)
T ss_pred cCHHHHHHHhhcccCC-CHHH-----HHHHHHHHHH-------HHHHcCCccceeEeccchhhhcCCCCcHHHHHHHHHH
Confidence 9999999975432110 0011 1111112222 2446899999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 022271 288 GAQLLVHT 295 (300)
Q Consensus 288 e~~~~l~~ 295 (300)
|+.+++++
T Consensus 299 e~~~~~~~ 306 (307)
T TIGR03151 299 EAKEVIKR 306 (307)
T ss_pred HHHHHHhc
Confidence 99988754
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=380.33 Aligned_cols=276 Identities=37% Similarity=0.593 Sum_probs=228.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcE-----E-----ee--
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPF-----G-----VG-- 69 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~-----g-----vn-- 69 (300)
.++..++++|||||+||+ ++|+++||.||||+|++|+++.. +.+.+.++++|+++|+++++|+ + +|
T Consensus 6 ~~~~~~~i~~PIiq~gM~-~vs~~~LA~Avs~aGglG~ia~~-~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~ 83 (336)
T COG2070 6 RFILLLGIKYPIIQGGMA-GVSTPELAAAVSNAGGLGIIASG-GLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVN 83 (336)
T ss_pred hhhcccCccCCeecCCcc-ccCcHHHHHHHhccCCccccccc-cCCHHHHHHHHHHHHHhcCCcchhcccccccccchhh
Confidence 467789999999999999 69999999999999999999874 6888999999999999999993 3 33
Q ss_pred eecC--CCcHHHHHHHHHc-CCcEEEEcCCCCcHHHHHHHHHCCCeEeec------------------------------
Q 022271 70 VVLA--FPHNENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------------------------------ 116 (300)
Q Consensus 70 l~~~--~~~~~~~~~~~e~-g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~------------------------------ 116 (300)
++.. ....+.++.+++. +++++++++|.||.++++.+|..|+++++.
T Consensus 84 ~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g 163 (336)
T COG2070 84 ILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHRG 163 (336)
T ss_pred eecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcCC
Confidence 3332 2346788888887 999999999977899999999999998875
Q ss_pred -----cChhchHHHHHHhhCCCC-CcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcce
Q 022271 117 -----DGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEY 190 (300)
Q Consensus 117 -----~~~~~ll~~v~~~~~~~~-iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~ 190 (300)
.+++.|+|+|++++ + ||||+||||+|++++++||++||+||||||||++|+||++|+.||++|++++++|+
T Consensus 164 ~~~~~~~t~~Lv~ev~~~~---~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l~~a~~~Dt 240 (336)
T COG2070 164 GVDLEVSTFALVPEVVDAV---DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQATEDDT 240 (336)
T ss_pred CCCCCccHHHHHHHHHHHh---cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHHhcccccCe
Confidence 23689999999998 6 99999999999999999999999999999999999999999999999999987664
Q ss_pred EEEecccCCCCCCCceecChhhHhhhcCCCCc-ccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccc
Q 022271 191 TDVFGRARWPGAPHRVLQTPFFSNWKNIPAHE-NEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGV 269 (300)
Q Consensus 191 t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~ 269 (300)
....+ ..|+|+|+++|+|++++...+... ....+|. +......++ .+...+|.+.+.+|+||..
T Consensus 241 v~~~~---~~G~paR~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~a~~~~~~~~~~~~aGq~~ 305 (336)
T COG2070 241 VLTKS---FTGKPARVLRNPLTEEYEDPERAPKAPLLYPE-----EGKKVGQLR-------KAVALGDADKGNVWAGQGF 305 (336)
T ss_pred EEEcc---cCCCcchhhCcHHHHhhhcccccccCCCccch-----hhhcchHHH-------HHHhhcchhhcchhcchhh
Confidence 43332 249999999999999987543210 1112221 111122222 2456889999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhhh
Q 022271 270 GLIREILPAGEVVKQLVEGAQLLVHTKF 297 (300)
Q Consensus 270 ~~i~~i~~a~eiv~~l~~e~~~~l~~~~ 297 (300)
++++++.|++++++++.+++.+.++...
T Consensus 306 ~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 333 (336)
T COG2070 306 GLINDIPTAADVIRSLVEEAKELTAGLA 333 (336)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999886643
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=346.79 Aligned_cols=202 Identities=23% Similarity=0.416 Sum_probs=179.4
Q ss_pred CccceecCCCCCCCCc-HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCC---cHHHHHHH
Q 022271 9 FEYGIVQAPLGPDISG-PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFP---HNENIKAI 83 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~-~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~---~~~~~~~~ 83 (300)
++|||||+||+ |+|+ ++||+||||+||||+|+++ ++++++++++|+++|++ |++|||||++.+.+ ..++++.+
T Consensus 1 ~~yPIiqgpM~-~vs~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi 78 (320)
T cd04743 1 TRYPIVQGPMT-RVSDVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVV 78 (320)
T ss_pred CCCCEECCCcC-CCCCcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHH
Confidence 48999999998 7998 9999999999999999985 78999999999999996 89999999976532 46899999
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHhhCC
Q 022271 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDLIGD 132 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~~~~ 132 (300)
++++|++|++++|.| .. ++++|++|+++++. .+++.|+|++++.+..
T Consensus 79 ~e~~v~~V~~~~G~P-~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~ 156 (320)
T cd04743 79 RAIKPTFALIAGGRP-DQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLA 156 (320)
T ss_pred HhcCCcEEEEcCCCh-HH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHH
Confidence 999999999999875 44 79999999999875 3488899999987721
Q ss_pred -------CCCcEEEccCCCChHHHHHHHHCCC--------cEEEeccccccCcccC----CCHHHHHHHHcCCCcceEEE
Q 022271 133 -------RDIPIIAAGGIVDARGYVAALSLGA--------QGICLGTRFVASEESY----AHPEYKRKLVEMDKTEYTDV 193 (300)
Q Consensus 133 -------~~iPViaaGGI~~g~~v~aal~lGA--------dgV~~GT~fl~t~Es~----~~~~~k~~i~~a~~t~~t~~ 193 (300)
.++|||+||||+|++++++++++|| +||||||+|++|+||. +|+.||++++++++|+++..
T Consensus 157 ~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a~~td~~~t 236 (320)
T cd04743 157 ANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALLET 236 (320)
T ss_pred hhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhCCCceEEEe
Confidence 2699999999999999999999999 8999999999999998 89999999999999886655
Q ss_pred ecccCCCCCCCceecChhhHhhhcCC
Q 022271 194 FGRARWPGAPHRVLQTPFFSNWKNIP 219 (300)
Q Consensus 194 ~~~~~~~g~~~R~l~n~~~~~~~~~~ 219 (300)
+ +|+|.|+|+|+|+++|.+.+
T Consensus 237 ~-----~G~~~R~l~n~~~~~~~~~~ 257 (320)
T cd04743 237 G-----PGHATRCVVSPFVDEFRATR 257 (320)
T ss_pred c-----CCCceeecCCHHHHHHHHhh
Confidence 4 48999999999999987643
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=314.70 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=167.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-c-CCcEEeeeecCCC----
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-T-ERPFGVGVVLAFP---- 75 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~-~~P~gvnl~~~~~---- 75 (300)
+|+++||++||||||||+.|+|+++|++||||||+||+|+++ +.++++++++|+++|+. + ++||||||+.+..
T Consensus 5 ~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag-~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~ 83 (418)
T cd04742 5 SFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAG-GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPEL 83 (418)
T ss_pred HHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCC-CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchh
Confidence 589999999999999998679999999999999999999986 57999999999999994 7 8999999997532
Q ss_pred cHHHHHHHHHcCCcEEEEc--------------------------------------------CCCCcHHHHHHHHHCC-
Q 022271 76 HNENIKAILSEKVAVLQVS--------------------------------------------WGEYSEELVLEAHSAG- 110 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~--------------------------------------------~G~~~~~~v~~~~~~G- 110 (300)
..+.++.+++++|++|..+ +|.||+++++++++.|
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 2456888888888766544 2333455556666655
Q ss_pred --------------CeEeec----------cChhchHHHHHHhhCC--------CCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 111 --------------VKVVPQ----------DGLISLLPMVVDLIGD--------RDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 111 --------------~~v~~~----------~~~~~ll~~v~~~~~~--------~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
...+.. .+++.|+|.|.+..+. .++|||+||||+|+++++++|+||||
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd 243 (418)
T cd04742 164 ITEEQAELARRVPVADDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGAD 243 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCc
Confidence 222221 2367788877764311 15999999999999999999999999
Q ss_pred EEEeccccccCcccCCCHHHHHHHHcCCCcc--eEEEecccCCCCCCCceecChh-----hHhh
Q 022271 159 GICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVLQTPF-----FSNW 215 (300)
Q Consensus 159 gV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~--~t~~~~~~~~~g~~~R~l~n~~-----~~~~ 215 (300)
+||+||+|++|.||.+|+.||++|++++.+| +|-..+.. -.|.+.|+|||.+ .+++
T Consensus 244 ~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dmf-e~G~~vqvlk~g~~f~~ra~kl 306 (418)
T cd04742 244 FIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADMF-ELGAKVQVLKRGTLFPARANKL 306 (418)
T ss_pred EEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEecccccc-cCCceehhhhhcccchHHHHHH
Confidence 9999999999999999999999999987655 33222110 1378899999998 6665
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=295.27 Aligned_cols=187 Identities=24% Similarity=0.312 Sum_probs=152.2
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCC-c-EEeeeecCCCc---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER-P-FGVGVVLAFPH--- 76 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~-P-~gvnl~~~~~~--- 76 (300)
.|+++||++||||||||+.|+|+++||+||||||+||+|+++ +.++++++++|+++|+++++ | |||||+.+.++
T Consensus 10 ~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~ 88 (444)
T TIGR02814 10 AFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPAL 88 (444)
T ss_pred HHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCccc
Confidence 488999999999999998679999999999999999999986 58999999999999997765 7 99999986432
Q ss_pred -HHHHHHHHHcCCcEEEEcCC--------------------------------------------CCcHHHHHHHHHCCC
Q 022271 77 -NENIKAILSEKVAVLQVSWG--------------------------------------------EYSEELVLEAHSAGV 111 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i~~~~G--------------------------------------------~~~~~~v~~~~~~G~ 111 (300)
.+.++.++++++++|..+.+ .||++.++++++.|+
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 35788999999988766522 122344444554441
Q ss_pred ---------------eEeec----------cChhchHHHHH---HhhC-----CCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 112 ---------------KVVPQ----------DGLISLLPMVV---DLIG-----DRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 112 ---------------~v~~~----------~~~~~ll~~v~---~~~~-----~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
..+.. .+++.|+|+|. +.+. ..+|||++||||.|+++++++|+||||
T Consensus 169 it~eEA~~a~~~g~aD~Ivve~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAd 248 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVEADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGAD 248 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEeccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCc
Confidence 11111 34788999986 4441 126899999999999999999999999
Q ss_pred EEEeccccccCcccCCCHHHHHHHHcCCCcc
Q 022271 159 GICLGTRFVASEESYAHPEYKRKLVEMDKTE 189 (300)
Q Consensus 159 gV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~ 189 (300)
+||+||+|++|.||.+|+.||++|++++.+|
T Consensus 249 gV~~GT~flat~Esgas~~~K~~L~~a~~~D 279 (444)
T TIGR02814 249 FIVTGSVNQCTVEAGTSDNVKKLLAKADVQD 279 (444)
T ss_pred EEEeccHHHhCccccCCHHHHHHHHhCCCcC
Confidence 9999999999999999999999999976655
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=187.44 Aligned_cols=189 Identities=46% Similarity=0.751 Sum_probs=159.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---CcHHHHHHHHHc
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---PHNENIKAILSE 86 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---~~~~~~~~~~e~ 86 (300)
++||++|||. |+++++++.+++++|++|+++.. +.+++++.+.++++++..+.|+++|++.+. ...+.++.+.+.
T Consensus 2 ~~pi~~a~m~-g~~~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (236)
T cd04730 2 RYPIIQAPMA-GVSTPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE 79 (236)
T ss_pred CCCEECCCCC-CCCCHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC
Confidence 6899999999 89999999999999999999764 679999999999999876789999999986 557789999999
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------------------c-------------ChhchHHHHHHhhCCC
Q 022271 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------------------D-------------GLISLLPMVVDLIGDR 133 (300)
Q Consensus 87 g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------------------~-------------~~~~ll~~v~~~~~~~ 133 (300)
+++.|.++.+ .+.++++.+++.++.++.. . ..+.++.++++.+
T Consensus 80 g~d~v~l~~~-~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--- 155 (236)
T cd04730 80 GVPVVSFSFG-PPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--- 155 (236)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---
Confidence 9999999866 4577787777777666543 0 1244777777776
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCcee
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 207 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l 207 (300)
++||+++|||.+++++.+++.+|||||++||+|+.+.|++.+..+|+++.+.+..+.....+ .+|.|.|++
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 226 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRA---FSGRPARGL 226 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCCCCeEEEec---cCCCcccee
Confidence 79999999999999999999999999999999999999999999999999986544222333 248888888
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=202.73 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=135.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC--CcHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENI 80 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--~~~~~~ 80 (300)
|++.+++++||+++||. ++|+++|+.+++++||+|+++. + ++++++.++++++|. ++.+|..... ...+.+
T Consensus 27 l~~~~~l~~Piv~apM~-~vt~~~ma~ava~~GglGvi~~-~-~~~~~~~~~i~~vk~----~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 27 LTKNITLNIPLVSAPMD-TVTESEMAIAMARLGGIGVIHR-N-MSIEEQAEEVRKVKG----RLLVGAAVGTREDDKERA 99 (325)
T ss_pred ecCccccCCCEEecCCC-cCCcHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHHHhcc----CceEEEecCCChhHHHHH
Confidence 56778999999999998 8999999999999999999986 3 588999999988873 4556654432 336789
Q ss_pred HHHHHcCCcEEEEc--CCCCc--HHHHHHHHHCC--CeEeec--------------------------------------
Q 022271 81 KAILSEKVAVLQVS--WGEYS--EELVLEAHSAG--VKVVPQ-------------------------------------- 116 (300)
Q Consensus 81 ~~~~e~g~~~i~~~--~G~~~--~~~v~~~~~~G--~~v~~~-------------------------------------- 116 (300)
+.++++++++|.++ .|.+. .+.++.+++.+ +.++..
T Consensus 100 ~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g 179 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG 179 (325)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC
Confidence 99999999998764 35432 45677777765 565531
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
.+.+.+++++.++++..++|||++|||.++++++++|++|||+|+|||+|+.|+||+.+-.+|+
T Consensus 180 ~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~ 243 (325)
T cd00381 180 VPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEIN 243 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEEC
Confidence 1245577777776643369999999999999999999999999999999999999997765443
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=199.22 Aligned_cols=174 Identities=22% Similarity=0.324 Sum_probs=135.2
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----CCCHHHHHHHHHH---------HHhhcCCcE----
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----WEAPDYLRDLIRK---------TRSLTERPF---- 66 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----~~~~~~l~~~i~~---------~r~~~~~P~---- 66 (300)
...+++++||+++||. |+++++|+++++++|++|++++.+ +.+++.+.++|.+ +++++++||
T Consensus 41 ~~~~~i~~Piv~a~M~-gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l 119 (368)
T PRK08649 41 IDAYRFEIPIIASPMD-AVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPEL 119 (368)
T ss_pred ecceeccCcEeccCCc-ccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHH
Confidence 4567799999999998 899999999999999999998422 4589999998874 366778888
Q ss_pred -----------EeeeecCC---CcHHHHHHHHHcCCcEEEEcCC---------C-CcHHHHHHHHHCCCeEee-c-----
Q 022271 67 -----------GVGVVLAF---PHNENIKAILSEKVAVLQVSWG---------E-YSEELVLEAHSAGVKVVP-Q----- 116 (300)
Q Consensus 67 -----------gvnl~~~~---~~~~~~~~~~e~g~~~i~~~~G---------~-~~~~~v~~~~~~G~~v~~-~----- 116 (300)
+||+.... ...+.++.++++|+++|.+++. . .+..+++.+++.++.|++ .
T Consensus 120 ~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e 199 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYT 199 (368)
T ss_pred HHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHH
Confidence 78775432 2468899999999999998641 1 145667777778888776 2
Q ss_pred ------------------c--------------ChhchHHHHHHhhC----C---CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 117 ------------------D--------------GLISLLPMVVDLIG----D---RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 117 ------------------~--------------~~~~ll~~v~~~~~----~---~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
. +++..+.+++++.+ + .++|||++|||.++.|+++||++||
T Consensus 200 ~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGA 279 (368)
T PRK08649 200 TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGA 279 (368)
T ss_pred HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 0 12223344443321 1 1599999999999999999999999
Q ss_pred cEEEeccccccCcccCCCHHH
Q 022271 158 QGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 158 dgV~~GT~fl~t~Es~~~~~~ 178 (300)
|+|+|||+|+.|.||+.+-.|
T Consensus 280 d~Vm~Gs~fa~t~Espg~~~~ 300 (368)
T PRK08649 280 DAVMLGSPLARAAEAPGRGWH 300 (368)
T ss_pred CeecccchhcccccCCCcccc
Confidence 999999999999999998755
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=194.56 Aligned_cols=173 Identities=18% Similarity=0.335 Sum_probs=129.8
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeee----------
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGV---------- 70 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl---------- 70 (300)
.|++.|++++||||+||. ++++++||+|+|++||+|+|+. + +++++++++|+++|+.. ..+|..|.
T Consensus 34 ~lt~~l~l~iPIvsApMd-~Vt~~~lA~AvA~aGGlGvI~~-~-~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~ 110 (404)
T PRK06843 34 QLTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK-N-MSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIF 110 (404)
T ss_pred hhhhccCCCCCEecCCCC-CCCCHHHHHHHHHCCCEEEecC-C-CCHHHHHHHHHHHHhhcCCCceeecccccccchhhe
Confidence 367899999999999998 8999999999999999999986 3 69999999999999764 34454443
Q ss_pred ------------------------------------ecCC--CcHHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHHHH
Q 022271 71 ------------------------------------VLAF--PHNENIKAILSEKVAVLQVSW--GEY--SEELVLEAHS 108 (300)
Q Consensus 71 ------------------------------------~~~~--~~~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~~~ 108 (300)
-... ...+.++.++++|+++|.+.. |.+ ..+.++.+++
T Consensus 111 t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred eccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 0100 123688999999999998643 321 1234445544
Q ss_pred C--CCeEee-c-------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 109 A--GVKVVP-Q-------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 109 ~--G~~v~~-~-------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
. +..++. . .+.+..+..+.+.++..++|||+.|||.++.|
T Consensus 191 ~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~D 270 (404)
T PRK06843 191 KYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGD 270 (404)
T ss_pred hCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHH
Confidence 2 333322 1 12344555555554334799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccCCCHH
Q 022271 149 YVAALSLGAQGICLGTRFVASEESYAHPE 177 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~~~~~ 177 (300)
+++||++||++|+|||+|..|.||+.+-.
T Consensus 271 i~KALalGA~aVmvGs~~agt~Espg~~~ 299 (404)
T PRK06843 271 VVKAIAAGADSVMIGNLFAGTKESPSEEI 299 (404)
T ss_pred HHHHHHcCCCEEEEcceeeeeecCCCcEE
Confidence 99999999999999999999999998753
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=173.77 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=124.9
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----CCCHHHHHHHHHH-------------HHhhcCCcEE
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----WEAPDYLRDLIRK-------------TRSLTERPFG 67 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----~~~~~~l~~~i~~-------------~r~~~~~P~g 67 (300)
..+.+++||++|||+ |+++++|+.++++.|++|+++..+ +.+++.+..+|.. ++++...|+.
T Consensus 39 ~~~~l~~PivlAPMa-gVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~ 117 (369)
T TIGR01304 39 DAYRFELPFIAHPMD-ALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLK 117 (369)
T ss_pred cceecCCceeecCCC-cccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccC
Confidence 456789999999999 899999999999999999987521 3455544444433 2333344444
Q ss_pred eeee-----------------cC-CCcHHHHHHHHHcCCcEEEEc---------CC-CCcHHHHHHHHHCCCeEee-c--
Q 022271 68 VGVV-----------------LA-FPHNENIKAILSEKVAVLQVS---------WG-EYSEELVLEAHSAGVKVVP-Q-- 116 (300)
Q Consensus 68 vnl~-----------------~~-~~~~~~~~~~~e~g~~~i~~~---------~G-~~~~~~v~~~~~~G~~v~~-~-- 116 (300)
.|++ .. ....+.++.++++|+++|.++ .| ..+.++.+..++.++.|+. .
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~ 197 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVN 197 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 4432 11 124688999999999999875 12 2355666667777888775 1
Q ss_pred ---------------------------------cChhchHHHHHHhh----CC---CCCcEEEccCCCChHHHHHHHHCC
Q 022271 117 ---------------------------------DGLISLLPMVVDLI----GD---RDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 117 ---------------------------------~~~~~ll~~v~~~~----~~---~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.++...++++..+. ++ ..+|||++|||.++.|++++|++|
T Consensus 198 t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlG 277 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACG 277 (369)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcC
Confidence 11223455555432 11 249999999999999999999999
Q ss_pred CcEEEeccccccCcccCCCHHHHH
Q 022271 157 AQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 157 AdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
||+|+|||+|+.+.||+..-.|--
T Consensus 278 AdaV~iGt~~a~a~Eapg~~~~w~ 301 (369)
T TIGR01304 278 ADAVVLGSPLARAAEAPGRGYFWP 301 (369)
T ss_pred CCEeeeHHHHHhhhcCCCCCCccc
Confidence 999999999999999988755443
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=173.83 Aligned_cols=173 Identities=19% Similarity=0.344 Sum_probs=125.6
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-------------------
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT------------------- 62 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~------------------- 62 (300)
.+++.|++++|||++||. +++.++||.|++++||+|+|.. + .+++....+++++++..
T Consensus 46 ~lt~~~~~~~Pivsa~M~-~vt~~~lA~Ama~aGGiGfI~~-~-as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA 122 (505)
T PLN02274 46 RLSRNIPLSIPCVSSPMD-TVTESDMAIAMAALGGIGIVHY-N-NTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSL 122 (505)
T ss_pred ccccccCcCCCEeccCCc-ccchHHHHHHHHhCCCeEEEcC-C-CCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHH
Confidence 367899999999999998 8999999999999999999986 3 68888888888877421
Q ss_pred ---------------------CCcEEee------------------------e---------------------------
Q 022271 63 ---------------------ERPFGVG------------------------V--------------------------- 70 (300)
Q Consensus 63 ---------------------~~P~gvn------------------------l--------------------------- 70 (300)
++++|+= +
T Consensus 123 ~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV 202 (505)
T PLN02274 123 DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV 202 (505)
T ss_pred HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 0111100 0
Q ss_pred ---------e-----------cC--C-------------------CcHHHHHHHHHcCCcEEEEcC--CCCcH--HHHHH
Q 022271 71 ---------V-----------LA--F-------------------PHNENIKAILSEKVAVLQVSW--GEYSE--ELVLE 105 (300)
Q Consensus 71 ---------~-----------~~--~-------------------~~~~~~~~~~e~g~~~i~~~~--G~~~~--~~v~~ 105 (300)
+ +. . ...+.++.++++|+++|.+.. |.... +.+++
T Consensus 203 D~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ 282 (505)
T PLN02274 203 NEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKY 282 (505)
T ss_pred cCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHH
Confidence 0 00 0 013667888888999887753 22111 45666
Q ss_pred HHHC--CCeEeec-----------------------------------------cChhchHHHHHHhhCCCCCcEEEccC
Q 022271 106 AHSA--GVKVVPQ-----------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 106 ~~~~--G~~v~~~-----------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
+++. +..++.. .+.+..++++++.. ++|||++||
T Consensus 283 ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~---~vpVIadGG 359 (505)
T PLN02274 283 IKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH---GVPVIADGG 359 (505)
T ss_pred HHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc---CCeEEEeCC
Confidence 6552 3444321 01333466666654 799999999
Q ss_pred CCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 143 IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 143 I~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
|.++.|+++||++||++|+|||+|..|.||+.+..||+
T Consensus 360 I~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~ 397 (505)
T PLN02274 360 ISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQD 397 (505)
T ss_pred CCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeC
Confidence 99999999999999999999999999999999887654
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-19 Score=166.89 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=128.9
Q ss_pred cccccCCccceecCCCCCCCCc----HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----
Q 022271 3 WRGMLGFEYGIVQAPLGPDISG----PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---- 74 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~----~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---- 74 (300)
.++.+++++||+++||++|..+ .+|+.+++++|+++.++.+ ..+|+.++..++.+++.+++|||||.....
T Consensus 70 ~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ 148 (392)
T cd02808 70 AEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEG-GELPEEREGGGDIIKQVASGRFGVRPEYLNKADA 148 (392)
T ss_pred cCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhhheEEEecCCCCccCHHHcccCcE
Confidence 4677899999999999965543 7999999999999999985 589999999999999999999999863210
Q ss_pred ----------------------------------------C-------c----HHHHHHHHHcC--CcEEEEcCCC-CcH
Q 022271 75 ----------------------------------------P-------H----NENIKAILSEK--VAVLQVSWGE-YSE 100 (300)
Q Consensus 75 ----------------------------------------~-------~----~~~~~~~~e~g--~~~i~~~~G~-~~~ 100 (300)
| . .+.++.+.+.. .+++..-.+. .+.
T Consensus 149 ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~ 228 (392)
T cd02808 149 IEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG 228 (392)
T ss_pred EEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHH
Confidence 0 0 23455555543 4555443222 245
Q ss_pred HHHHHHHHCCCeEeec-------------------cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 101 ELVLEAHSAGVKVVPQ-------------------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~-------------------~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
++...++..|+..+.. .+++..++++++++.. .++|||++|||.++.|++++|++||
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGA 308 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGA 308 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCC
Confidence 5555555555665543 2356678888887631 2699999999999999999999999
Q ss_pred cEEEeccccccCcccC
Q 022271 158 QGICLGTRFVASEESY 173 (300)
Q Consensus 158 dgV~~GT~fl~t~Es~ 173 (300)
|+|++||+|+.+.+|.
T Consensus 309 d~V~ig~~~l~al~c~ 324 (392)
T cd02808 309 DAVGIGTAALIALGCI 324 (392)
T ss_pred CeeeechHHHHhcchH
Confidence 9999999999998874
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=156.65 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=121.8
Q ss_pred ccccCC--ccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC-
Q 022271 4 RGMLGF--EYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF- 74 (300)
Q Consensus 4 ~~~lg~--~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~- 74 (300)
+++||. ++||+++||+ |.+ ...|+.+++++|..+.++.....++++++ +..++|+++|++...
T Consensus 56 ~~~lg~~~~~Pi~iapm~-g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~~~~~~~ql~~~~~ 127 (299)
T cd02809 56 TTLLGQKLAMPFGIAPTG-LQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVA-------AAAPGPRWFQLYVPRD 127 (299)
T ss_pred eEECCeecCCCeeeCccc-ccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHH-------HhcCCCeEEEEeecCC
Confidence 457776 5899999997 565 45999999999999988763223444333 333479999998753
Q ss_pred Cc--HHHHHHHHHcCCcEEEEcCCCCc------HHHHHHHHHC-CCeEeec-----------------------------
Q 022271 75 PH--NENIKAILSEKVAVLQVSWGEYS------EELVLEAHSA-GVKVVPQ----------------------------- 116 (300)
Q Consensus 75 ~~--~~~~~~~~e~g~~~i~~~~G~~~------~~~v~~~~~~-G~~v~~~----------------------------- 116 (300)
+. .+.++.+.+.++++|.++.++|. .+.++++++. ++.++..
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~ 207 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQL 207 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCC
Confidence 22 45677778889999999998875 3667776653 4444321
Q ss_pred ---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCccc
Q 022271 117 ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172 (300)
Q Consensus 117 ---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es 172 (300)
.+++.+++++++.+.. ++|||++|||.+++|+.++|++|||+|++||+|+....+
T Consensus 208 ~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~ 265 (299)
T cd02809 208 DGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred CCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 2467789999888732 599999999999999999999999999999999987543
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=166.64 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=50.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
+++.+++++|||++||. +++.++||.+++++||+|+|+. .+++|+..++++++++
T Consensus 43 l~~~~~l~~Pii~a~M~-~vt~~~ma~a~a~~GglGvi~~--~~~~e~~~~~v~kvk~ 97 (495)
T PTZ00314 43 LTRNIRLKIPIVSSPMD-TVTEHKMAIAMALMGGIGVIHN--NCSIEEQVEEVRKVKR 97 (495)
T ss_pred ccCCcccCCceeecCcc-ccccHHHHHHHHHCCCeEEecC--CCCHHHHHHHHhhccc
Confidence 67889999999999999 7999999999999999999975 4799999999999985
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=153.18 Aligned_cols=168 Identities=23% Similarity=0.348 Sum_probs=125.7
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc---------CCcEEeeeecCC
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAF 74 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~---------~~P~gvnl~~~~ 74 (300)
++-+.++.|||.+||. .+++.+||.++++.||+|+|+. + .+.++..++++++++.. ...+++-+-...
T Consensus 31 ~~~~~l~iPivsa~MD-tVte~~mAiama~~Gglgvih~-~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~ 107 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMD-TVTESEMAIAMARLGGLGVIHR-N-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD 107 (352)
T ss_dssp STSEEESSSEEE-SST-TTSSHHHHHHHHHTTSEEEEES-S-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST
T ss_pred cCCEeecCceEecCcc-ccchHHHHHHHHHhcCCceecC-C-CCHHHHHHHHhhhccccccccccccccceEEEEecCCH
Confidence 4566789999999999 8999999999999999999997 3 68888888898887631 223455555444
Q ss_pred CcHHHHHHHHHcCCcEEEEc--CCCCcHH---HHHHHHH-CC-CeEeec-------------------------------
Q 022271 75 PHNENIKAILSEKVAVLQVS--WGEYSEE---LVLEAHS-AG-VKVVPQ------------------------------- 116 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~--~G~~~~~---~v~~~~~-~G-~~v~~~------------------------------- 116 (300)
.+.+.++.+++.+++++.+. .|. ... .++.+++ .+ +.|+..
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~-s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGH-SEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTT-SHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred HHHHHHHHHHHcCCCEEEccccCcc-HHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 56788999999999999874 344 232 2333332 22 444321
Q ss_pred -------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 117 -------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 117 -------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+.++.+.++.++.++.++||||.|||.++.|+.+||++|||.||||+.|..|.||+..
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~ 252 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGE 252 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCc
Confidence 34667777888776555899999999999999999999999999999999999999854
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=149.06 Aligned_cols=160 Identities=25% Similarity=0.342 Sum_probs=119.9
Q ss_pred ccC--CccceecCCCCCCCC------cHHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHhhcC-CcEEeeeecC
Q 022271 6 MLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLA 73 (300)
Q Consensus 6 ~lg--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~ 73 (300)
++| +++||+++||+ |.+ +++|+.+++++| ++|..+++ +.+|+.. +.++.+|+.+. .||.+|+...
T Consensus 46 ~~G~~l~~Pi~ia~mt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~ 122 (326)
T cd02811 46 FLGKRLSAPLLISAMT-GGSEKAKEINRNLAEAAEELGIAMGVGSQRAA-LEDPELA-ESFTVVREAPPNGPLIANLGAV 122 (326)
T ss_pred ECCceecCCEEEeCCC-CCChHHHHHHHHHHHHHHHcCCCeEecCchhh-ccChhhh-hHHHHHHHhCCCceEEeecCcc
Confidence 455 79999999999 667 799999999999 88888764 6788855 88999999876 9999998764
Q ss_pred C----Cc----------------------------------H---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHHC
Q 022271 74 F----PH----------------------------------N---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHSA 109 (300)
Q Consensus 74 ~----~~----------------------------------~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~~ 109 (300)
. .. . +.++.+.+. +++++.. .+|. ..+.+..+.++
T Consensus 123 ~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~-s~~~a~~l~~~ 201 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGI-SRETAKRLADA 201 (326)
T ss_pred ccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHHc
Confidence 3 10 1 334555554 6677654 2333 35667777777
Q ss_pred CCeEeec-------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 110 GVKVVPQ-------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 110 G~~v~~~-------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
|+..+.. .++...++++++.+. ++|||++|||.++.|+.++|++|||
T Consensus 202 Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd 279 (326)
T cd02811 202 GVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGAD 279 (326)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCC
Confidence 7766542 112345666666653 7999999999999999999999999
Q ss_pred EEEeccccccCcc
Q 022271 159 GICLGTRFVASEE 171 (300)
Q Consensus 159 gV~~GT~fl~t~E 171 (300)
+|++|++|+..--
T Consensus 280 ~V~i~~~~L~~~~ 292 (326)
T cd02811 280 LVGMAGPFLKAAL 292 (326)
T ss_pred EEEEcHHHHHHHh
Confidence 9999999997653
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=150.02 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=118.7
Q ss_pred CccceecCCCCCCCCc------HHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCC---
Q 022271 9 FEYGIVQAPLGPDISG------PELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFP--- 75 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~------~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~--- 75 (300)
+++||+++||+ |.|. ++||.+++++| ++|....+ +.+|+ +++.++.+|+.+ ++||.+||.....
T Consensus 59 l~~Pi~i~~Mt-Ggs~~~~~in~~La~~a~~~G~~~~~Gs~~~~-~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~ 135 (352)
T PRK05437 59 LSAPFLINAMT-GGSEKAKEINRKLAEAAEELGIAMGVGSQRAA-LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY 135 (352)
T ss_pred ecCCEEecccC-CCChhHHHHHHHHHHHHHHcCCCeEecccHhh-ccChh-hHHHHHHHHHHCCCceEEeecCccccCCC
Confidence 79999999999 6676 89999999999 89988774 67888 999999999987 8999999987432
Q ss_pred -c----------------------------------H---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHHCCCeEe
Q 022271 76 -H----------------------------------N---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 76 -~----------------------------------~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~~G~~v~ 114 (300)
. . +.++.+.+. +++++.. .+|. ..+.++.+.++|+..+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~-s~~~a~~l~~~Gvd~I 214 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGI-SKETAKRLADAGVKAI 214 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCC-cHHHHHHHHHcCCCEE
Confidence 0 1 334444443 6676654 2233 3566667777776665
Q ss_pred ec-----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 115 PQ-----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 115 ~~-----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.. .++...++++++.+ .++|||++|||.++.|+.++|++|||+|++||.
T Consensus 215 ~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~ 292 (352)
T PRK05437 215 DVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGP 292 (352)
T ss_pred EECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 42 11334666677663 279999999999999999999999999999999
Q ss_pred cccC
Q 022271 166 FVAS 169 (300)
Q Consensus 166 fl~t 169 (300)
|+..
T Consensus 293 ~l~~ 296 (352)
T PRK05437 293 FLKA 296 (352)
T ss_pred HHHH
Confidence 9986
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=151.47 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=52.1
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+++..+++++++.+..++|||+.|||.++.|+++||++|||.|++||.|..+.||+..-
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~ 373 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV 373 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCce
Confidence 35678888888764447999999999999999999999999999999999999998763
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=139.71 Aligned_cols=167 Identities=18% Similarity=0.137 Sum_probs=122.2
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHc
Q 022271 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE 86 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~ 86 (300)
+-+..|||.|.|. .+.+.+||.+.++.|++|+++- + +++|+..+++++...-..+-..|-+-....+.+.++.++++
T Consensus 42 ~~~~iPii~AnMd-tv~~~~mA~~la~~g~~~~iHk-~-~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 42 TYSGVPIIAANMD-TVGTFEMAAALSQHSIFTAIHK-H-YSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred eeeCCceEecCCC-cccCHHHHHHHHHCCCeEEEee-C-CCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 3478999999998 8999999999999999999997 3 58988888887755422222222111122345678888887
Q ss_pred C--CcEEEEc--CCC-------------------------CcHHHHHHHHHCCCeEeec-----------------cChh
Q 022271 87 K--VAVLQVS--WGE-------------------------YSEELVLEAHSAGVKVVPQ-----------------DGLI 120 (300)
Q Consensus 87 g--~~~i~~~--~G~-------------------------~~~~~v~~~~~~G~~v~~~-----------------~~~~ 120 (300)
+ +++|.+. .|. ...+-...+-++|+..+.. .+.+
T Consensus 119 ~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pql 198 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQL 198 (343)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHH
Confidence 5 8887653 232 1122233333444443321 2578
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+.+++++++....++|||+.|||.++.|+++||++|||+|++|+-|..+.|++.+-
T Consensus 199 tAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~ 254 (343)
T TIGR01305 199 SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEV 254 (343)
T ss_pred HHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCccee
Confidence 89999999886557999999999999999999999999999999999999988653
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=139.89 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=117.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHc--C
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE--K 87 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~--g 87 (300)
..|||.|+|. .+.+.+||.+.++.|++++++- ++++|+..+++++++.....-..|-+-....+.+.++.+++. +
T Consensus 46 giPii~AnMd-TV~~~~mA~~la~~g~~~~iHk--~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g 122 (346)
T PRK05096 46 GVPIIAANMD-TVGTFEMAKALASFDILTAVHK--HYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPA 122 (346)
T ss_pred CCceEecCCC-ccccHHHHHHHHHCCCeEEEec--CCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCC
Confidence 3999999998 8999999999999999999997 368998888888776432111222111112235677788874 8
Q ss_pred CcEEEEc--CCCC-------------------------cHHHHHHHHHCCCeEeec-----------------cChhchH
Q 022271 88 VAVLQVS--WGEY-------------------------SEELVLEAHSAGVKVVPQ-----------------DGLISLL 123 (300)
Q Consensus 88 ~~~i~~~--~G~~-------------------------~~~~v~~~~~~G~~v~~~-----------------~~~~~ll 123 (300)
+++|.+. .|.. ..+.++.+-++|+..+.. .+.++.+
T Consensus 123 ~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV 202 (346)
T PRK05096 123 LNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAV 202 (346)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHH
Confidence 8888653 2321 122233333344443321 2356667
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
.++.++.++.++|||+.|||.+..|+++||++|||.||||+-|..|.||+..-
T Consensus 203 ~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~ 255 (346)
T PRK05096 203 IECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEI 255 (346)
T ss_pred HHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcE
Confidence 77777665558999999999999999999999999999999999999998653
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-15 Score=130.20 Aligned_cols=146 Identities=15% Similarity=0.217 Sum_probs=104.2
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCC----------------------CHHHHHHHHHHHHhhcCCcEEee
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE----------------------APDYLRDLIRKTRSLTERPFGVG 69 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~----------------------~~~~l~~~i~~~r~~~~~P~gvn 69 (300)
||++|||+ |+++.+|+.++++.+|+++++..+.. ..+.+.+++.++++. +.|+++|
T Consensus 1 ~~~lApMa-g~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~-~~p~~vq 78 (233)
T cd02911 1 PVALASMA-GITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS-NVLVGVN 78 (233)
T ss_pred CceeeecC-CCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc-CCeEEEE
Confidence 89999999 89999999999999999999753311 234555666666543 6799999
Q ss_pred eecCCCc--HHHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCCCeEeec------------
Q 022271 70 VVLAFPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 70 l~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G~~v~~~------------ 116 (300)
+....+. .+.++.+.+ ..++|.+++|||.+ ++++.+++.++.|...
T Consensus 79 i~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 79 VRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred ecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHH
Confidence 9987653 344555544 46888888887632 3344444445444432
Q ss_pred ------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 117 ------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 117 ------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.+ .+..+.+++ + ++|||+.|||.|.+++.+++..|||+|++|+.
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~---~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--T---ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--C---CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 01 123333333 2 79999999999999999999999999999998
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=138.41 Aligned_cols=160 Identities=25% Similarity=0.339 Sum_probs=115.8
Q ss_pred cccC--CccceecCCCCCCCC------cHHHHHHHHhCC---ceEEecCCCCCCHHHHHHHHHHHHh-hcCCcEEeeeec
Q 022271 5 GMLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVL 72 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~~~l~~~i~~~r~-~~~~P~gvnl~~ 72 (300)
++|| +++||+++||+ |.+ +++|+.+++++| ++|...++ +.+|+.... .+.+|+ .++.|+.+|+..
T Consensus 46 ~~~g~~l~~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~~~~~~-~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 46 EFLGKRLKAPFYINAMT-GGSEEAGKINRNLARAARELGIPMGVGSQRAA-LKDPETADT-FEVVREEAPNGPLIANIGA 122 (333)
T ss_pred EECCccccCCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeEEcCchhh-ccChhhHhH-HHHHHHhCCCCcEEeecCc
Confidence 4455 79999999999 788 899999999999 88877663 667875544 477888 588999999864
Q ss_pred CCC--------------------------------------cH---HHHHHHHHc-CCcEEEE--cCCCCcHHHHHHHHH
Q 022271 73 AFP--------------------------------------HN---ENIKAILSE-KVAVLQV--SWGEYSEELVLEAHS 108 (300)
Q Consensus 73 ~~~--------------------------------------~~---~~~~~~~e~-g~~~i~~--~~G~~~~~~v~~~~~ 108 (300)
... +. +.++.+.+. +++++.. .+|. ..+.++.+.+
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~-~~~~a~~L~~ 201 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGI-SKEVAKLLAD 201 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHHHHHH
Confidence 211 01 345555554 6777764 3343 4667777888
Q ss_pred CCCeEeeccC-----------------------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 109 AGVKVVPQDG-----------------------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 109 ~G~~v~~~~~-----------------------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
+|+..+...+ +...++++++. ..++|||++|||.++.|+.++|++|||+
T Consensus 202 aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~ 279 (333)
T TIGR02151 202 AGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADA 279 (333)
T ss_pred cCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCe
Confidence 8877664311 11234444441 1279999999999999999999999999
Q ss_pred EEeccccccCc
Q 022271 160 ICLGTRFVASE 170 (300)
Q Consensus 160 V~~GT~fl~t~ 170 (300)
|++|+.|+..-
T Consensus 280 V~igr~~L~~~ 290 (333)
T TIGR02151 280 VGMARPFLKAA 290 (333)
T ss_pred ehhhHHHHHHH
Confidence 99999999654
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=138.22 Aligned_cols=184 Identities=23% Similarity=0.275 Sum_probs=147.4
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc---
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--- 76 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--- 76 (300)
-|++++| +.||+.++|.+..-++++++|.+|||..--++.+++.+++-+.+.|.++-.+. +.-+++|.+..+|+
T Consensus 27 kfsrLtG-r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~ 105 (717)
T COG4981 27 KFSRLTG-RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWK 105 (717)
T ss_pred chhhhcC-CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhh
Confidence 3789999 69999999997667899999999999999999888999999999999998764 45689998876654
Q ss_pred -----HHHHHHHHHcCC--cEEEEcCCCCcH----HHHHHHHHCCCeEeec-----------------------------
Q 022271 77 -----NENIKAILSEKV--AVLQVSWGEYSE----ELVLEAHSAGVKVVPQ----------------------------- 116 (300)
Q Consensus 77 -----~~~~~~~~e~g~--~~i~~~~G~~~~----~~v~~~~~~G~~v~~~----------------------------- 116 (300)
...++.+...|. +.|.++.|.|.. ++|+.+-.-|+..+..
T Consensus 106 ~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 106 LQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred hcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 456777777764 668889998753 4555555567776643
Q ss_pred -------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-----------CCCcEEEeccccccCccc
Q 022271 117 -------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-----------LGAQGICLGTRFVASEES 172 (300)
Q Consensus 117 -------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-----------lGAdgV~~GT~fl~t~Es 172 (300)
..++....+++.. .+|-|++.|||+++++.+.+|. |--||+.+||+-++|+|+
T Consensus 186 GraGGHHSweDld~llL~tYs~lR~~---~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEa 262 (717)
T COG4981 186 GRAGGHHSWEDLDDLLLATYSELRSR---DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEA 262 (717)
T ss_pred CccCCccchhhcccHHHHHHHHHhcC---CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhc
Confidence 0122233344443 3899999999999999998883 788999999999999999
Q ss_pred CCCHHHHHHHHcCCCcc
Q 022271 173 YAHPEYKRKLVEMDKTE 189 (300)
Q Consensus 173 ~~~~~~k~~i~~a~~t~ 189 (300)
..|+..|++|++++.+|
T Consensus 263 tTSp~vK~~lv~t~Gvd 279 (717)
T COG4981 263 TTSPAVKEALVATQGVD 279 (717)
T ss_pred cCCHHHHHHHhhCCCCC
Confidence 99999999999986555
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=140.60 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=68.9
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCC-------CHHHHH--------HHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA-------HPEYKR--------KLV 183 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~-------~~~~k~--------~i~ 183 (300)
.++.+.++.++.+..++|||+.|||.++.|++++|++||++|++|+.|..|.||+. ...||+ ++.
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~ 394 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVA 394 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHh
Confidence 56677777776544479999999999999999999999999999999999999998 455666 554
Q ss_pred cC--CCcceEEEecccCCCCCCCceecChhhH
Q 022271 184 EM--DKTEYTDVFGRARWPGAPHRVLQTPFFS 213 (300)
Q Consensus 184 ~a--~~t~~t~~~~~~~~~g~~~R~l~n~~~~ 213 (300)
+. .++.++..+ .++++|++.|.|..
T Consensus 395 ~~~~~~~~~~~~~-----~~~~~eGv~~~~~~ 421 (479)
T PRK07807 395 ARTAGDSAFDRAR-----KALFEEGISTSRMY 421 (479)
T ss_pred cccCccchhhhcc-----cCCCCCCccceeee
Confidence 32 233333333 36788888887654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=130.22 Aligned_cols=57 Identities=32% Similarity=0.452 Sum_probs=50.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+..++++.++.+..++|||+.|||.++.|+++||++||+.|++||.|..|.||+..
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCc
Confidence 456777787766445799999999999999999999999999999999999999865
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=121.49 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=115.5
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC--cHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--HNENIKAILS 85 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~~~~~~~e 85 (300)
.+.+|++-+.|. ...+.+||.+..+.|+++.+.- +++|+..+.+++++.. . +-+|+-.... +.+.++.+++
T Consensus 32 ~l~~P~~inAM~-t~in~~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k~~--~-L~v~~SvG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 32 KFKLPVVPANMQ-TIIDEKLAEQLAENGYFYIMHR---FDEESRIPFIKDMQER--G-LFASISVGVKACEYEFVTQLAE 104 (321)
T ss_pred EecCcEEeeccc-hhhhHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc--c-cEEEEEcCCCHHHHHHHHHHHh
Confidence 478999999998 6999999999999999999875 3888877776665432 2 2344444332 3467778888
Q ss_pred cC--CcEEEEcC--CC-------------------------CcHHHHHHHHHCCCeEeec-----------------cC-
Q 022271 86 EK--VAVLQVSW--GE-------------------------YSEELVLEAHSAGVKVVPQ-----------------DG- 118 (300)
Q Consensus 86 ~g--~~~i~~~~--G~-------------------------~~~~~v~~~~~~G~~v~~~-----------------~~- 118 (300)
.+ +++|.+.. |. ...+....+.++|+..+.. .+
T Consensus 105 a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 105 EALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred cCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 77 57775532 22 1233444455555544321 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+..+++++++. ++|||+.|||.++.|+++||++|||+|++|+.|..|.||+..
T Consensus 185 ~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~ 239 (321)
T TIGR01306 185 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGE 239 (321)
T ss_pred hHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCc
Confidence 345677788776 799999999999999999999999999999999999999865
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=123.51 Aligned_cols=175 Identities=16% Similarity=0.185 Sum_probs=115.9
Q ss_pred ccccC--CccceecCCCCCCCC--cH----HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS--GP----ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s--~~----~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +++||+-+||+ ... .+ .++.+..++|....++.....+.|++ .+.. ..+.|+.++|..+..
T Consensus 56 ~~~lG~~~~~Pi~iaP~~-~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v----~~~~-~~~~~~w~Qly~~~d 129 (344)
T cd02922 56 TTILGHKVSLPFFISPAA-LAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEI----VDAR-PPDQPLFFQLYVNKD 129 (344)
T ss_pred eEECCcccCCceeeChHH-HhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHH----HHhc-CCCCcEEEEEeecCC
Confidence 45676 68899999997 233 23 88999999998888876433444432 1111 123577788776532
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCC---------------------------------------------cHHHHHHHH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEY---------------------------------------------SEELVLEAH 107 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~---------------------------------------------~~~~v~~~~ 107 (300)
..+.++.+.+.|++.+.++.+.| ..+.+++++
T Consensus 130 ~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 209 (344)
T cd02922 130 RTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLR 209 (344)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHH
Confidence 25566777777777766543221 012233332
Q ss_pred ----------------------HCCCeEeec-----------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHH
Q 022271 108 ----------------------SAGVKVVPQ-----------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 108 ----------------------~~G~~v~~~-----------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aa 152 (300)
++|+..+.. .+++..++++++.++ ..++|||++|||.+|.|++++
T Consensus 210 ~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ka 289 (344)
T cd02922 210 KHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKA 289 (344)
T ss_pred HhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 333332221 235567888887542 126999999999999999999
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|++||++|++||+|+...++...+...+.+..
T Consensus 290 laLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~ 321 (344)
T cd02922 290 LCLGAKAVGLGRPFLYALSAYGEEGVEKAIQI 321 (344)
T ss_pred HHcCCCEEEECHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999988766666665554
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=124.10 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=109.6
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHH--HHHHHHHHhh---cCCcEEeeeecCCCc--HH
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYL--RDLIRKTRSL---TERPFGVGVVLAFPH--NE 78 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l--~~~i~~~r~~---~~~P~gvnl~~~~~~--~~ 78 (300)
.+.++.|+++|||+ |+|+..|...+.+.|+ |+..+. +.+.+.+ .....+.+.. ...|++++++.+.+. .+
T Consensus 5 ~~~~~~~~~lAPM~-g~td~~fR~l~~~~g~-~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 5 QYQLRNRLIAAPMA-GITDRPFRTLCYEMGA-GLTVSE-MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred CccCCCCEEecCCC-CCCcHHHHHHHHHHCC-CEEEEc-cEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 35578899999998 8999999999999885 554442 4443322 1122222211 236889999987764 34
Q ss_pred HHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec----------------------
Q 022271 79 NIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ---------------------- 116 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~---------------------- 116 (300)
.++.+.+.++++|.+++|||.+ ++++.+++ .+..+...
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 4566677899999999999732 12222222 12222210
Q ss_pred ------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCc
Q 022271 117 ------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~ 170 (300)
...+.++.++++.+ ++|||+.|||.|.+++.+++. .|||+|++|+.++..+
T Consensus 162 G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP 231 (321)
T PRK10415 162 GIQALTIHGRTRACLFNGEAEYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 (321)
T ss_pred CCCEEEEecCccccccCCCcChHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCC
Confidence 12456777787776 799999999999999999997 6999999999999864
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-13 Score=123.86 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=112.4
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-----cCCcEEeeeecCCCc--HHH
Q 022271 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-----TERPFGVGVVLAFPH--NEN 79 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-----~~~P~gvnl~~~~~~--~~~ 79 (300)
+.+++|+++|||. |+|+..|...+.+.| .+++.+. +.+.+.+....++.+.. .+.|+.+++..+.+. .+.
T Consensus 4 ~~~~~~l~lAPm~-~~t~~~fR~l~~~~g-~~~~~te-mi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 4 IQLKSRVVLAPMA-GVTDSPFRRLVAEYG-AGLTVCE-MVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred ccCCCCEEecCCC-CCCcHHHHHHHHHHC-CCEEEEC-CEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHH
Confidence 3468999999998 899999999999998 5777653 55555554333333322 268999999988763 455
Q ss_pred HHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec-----------------------
Q 022271 80 IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ----------------------- 116 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~----------------------- 116 (300)
++.+.+.|++.|.+++|+|.. ++++.+++ .++.+...
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 667778899999998887621 22222222 22222110
Q ss_pred -----------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-HCCCcEEEeccccccCc
Q 022271 117 -----------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -----------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-~lGAdgV~~GT~fl~t~ 170 (300)
...+..+.++++.+ ++|||+.|||.|++++.+++ ..|||+|++|+.++.-+
T Consensus 161 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P 229 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYSGEANWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNP 229 (319)
T ss_pred CCEEEEEcccccccCCCchhHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCC
Confidence 01345566666665 79999999999999999999 57999999999999764
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=121.13 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=114.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC--cHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--HNENIKAILS 85 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~~~~~~~e 85 (300)
.+.+|++.++|. ...+.+||....+.|+++.+.- +++|+..+..++.+. ..+-+|+-.... ..+.++.+++
T Consensus 35 ~l~~P~~inAM~-t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~~---~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANMQ-TIIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMHE---QGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEeccc-chhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhccc---cccEEEEEecCCHHHHHHHHHHHh
Confidence 367899999997 6899999999999999999875 388877777644432 223456655432 3467888889
Q ss_pred cCC--cEEEEcC--CC--CcHHHHHHHHHC--CCeEeec--------------------------------------cC-
Q 022271 86 EKV--AVLQVSW--GE--YSEELVLEAHSA--GVKVVPQ--------------------------------------DG- 118 (300)
Q Consensus 86 ~g~--~~i~~~~--G~--~~~~~v~~~~~~--G~~v~~~--------------------------------------~~- 118 (300)
+|+ ++|.+.. |. ...++++++++. +..|+.. .+
T Consensus 108 ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 108 EGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 854 9988732 11 123344444431 2333321 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.++.++++++++ ++|||+.|||.++.|++++|++|||+|++|+.|+.+.||+..
T Consensus 188 w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~ 242 (326)
T PRK05458 188 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGK 242 (326)
T ss_pred cHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCc
Confidence 244577887776 799999999999999999999999999999999999999765
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=125.17 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=46.6
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
+.-+-+++++.+..++||||.|||.++.|+++||++||++|++|+.|..|.||+..
T Consensus 314 ~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 314 FSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 33444454444334799999999999999999999999999999999999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=105.95 Aligned_cols=143 Identities=20% Similarity=0.349 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---------CcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------PHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------~~~~~~~~~~e~g~~~i~~~~ 95 (300)
..||.|+...|..|+-.. ++ +.|+.+|+.++.|+ ++|+... |..+.++.+.+.|+++|.+.+
T Consensus 2 ~~mA~Aa~~gGA~giR~~----~~----~dI~aik~~v~lPI-IGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa 72 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRAN----GV----EDIRAIKKAVDLPI-IGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA 72 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE----SH----HHHHHHHTTB-S-E-EEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred HHHHHHHHHCCceEEEcC----CH----HHHHHHHHhcCCCE-EEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence 478999999999998875 33 57888999999997 5665431 457899999999999999864
Q ss_pred C-C--C--cHHHHHHHHHCCCeEeec--------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 G-E--Y--SEELVLEAHSAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 G-~--~--~~~~v~~~~~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
- . | ..+++.++|+.+..++.+ .+.+.|+.++++. ++|||
T Consensus 73 T~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvI 148 (192)
T PF04131_consen 73 TDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVI 148 (192)
T ss_dssp SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEE
T ss_pred CCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEe
Confidence 2 2 1 368888899988888775 2357788888764 79999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+-|+|++++++.++|.+||++|++||+.....+ ....|.+++
T Consensus 149 aEGri~tpe~a~~al~~GA~aVVVGsAITrP~~--It~~F~~ai 190 (192)
T PF04131_consen 149 AEGRIHTPEQAAKALELGAHAVVVGSAITRPQE--ITKRFVDAI 190 (192)
T ss_dssp EESS--SHHHHHHHHHTT-SEEEE-HHHH-HHH--HHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHhcCCeEEEECcccCCHHH--HHHHHHHHH
Confidence 999999999999999999999999999877654 344455443
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=116.19 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=108.9
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH-------HHHH----HhhcCCcEEeeeecCCCc--H
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-------IRKT----RSLTERPFGVGVVLAFPH--N 77 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~-------i~~~----r~~~~~P~gvnl~~~~~~--~ 77 (300)
.|++.|||+ |+|+..+...+.+-|+.++..+. |.+.+.+... .... +.-.+.|+.++|+...+. .
T Consensus 1 ~~~~lAPMa-g~td~~fR~l~~~~g~~~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~ 78 (312)
T PRK10550 1 MRVLLAPME-GVLDSLVRELLTEVNDYDLCITE-FLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLA 78 (312)
T ss_pred CCeEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHH
Confidence 378999999 89999999999999877776653 4443222111 1111 112357999999998764 4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHC---CCeEeec-------------------
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSA---GVKVVPQ------------------- 116 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~---G~~v~~~------------------- 116 (300)
+.++.+.+.|.+.|.+++|||.+ ++++.++++ +..|...
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~ 158 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQ 158 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHH
Confidence 55667778899999999998742 222333322 2333221
Q ss_pred ------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCc
Q 022271 117 ------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~ 170 (300)
.+ .+..+.++++.+ ++|||+.|||.|++++.+++. -|||+|++|+.++..+
T Consensus 159 ~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~---~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 159 QAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL---TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIP 231 (312)
T ss_pred hcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc---CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCc
Confidence 00 244567777776 799999999999999999996 6999999999999874
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=104.52 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEE-e------e--eecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-V------G--VVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~g-v------n--l~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
.+++.+++++|+.|+... + .+.++++|+.++.|+- . | ++. .+..+.++.+.+.|+++|.+..
T Consensus 26 ~~~a~a~~~~G~~~~~~~----~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~-~~~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN----G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYI-TPTLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcC----C----HHHHHHHHHhCCCCEEEEEecCCCCCCceE-CCCHHHHHHHHHcCCCEEEEeC
Confidence 589999999999998753 3 3578888888899983 2 2 322 2456789999999999888754
Q ss_pred CC-------CcHHHHHHHHH-CCCeEeec-------------------c--------------ChhchHHHHHHhhCCCC
Q 022271 96 GE-------YSEELVLEAHS-AGVKVVPQ-------------------D--------------GLISLLPMVVDLIGDRD 134 (300)
Q Consensus 96 G~-------~~~~~v~~~~~-~G~~v~~~-------------------~--------------~~~~ll~~v~~~~~~~~ 134 (300)
.. ...++++.+++ .|+.++.. . ..+.+++++++.+ +
T Consensus 97 ~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~ 173 (221)
T PRK01130 97 TLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---G 173 (221)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---C
Confidence 32 22578888888 78777653 0 1245677777766 7
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+||+++|||.+++++.+++.+|||+|++||.++..
T Consensus 174 iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 99999999999999999999999999999998764
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=113.35 Aligned_cols=116 Identities=25% Similarity=0.325 Sum_probs=93.3
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
+.|+++|+.++.|+.|+-+. ..+.++.+.+.|++.|.++. |. . ..+ ...+++..++++++++.
T Consensus 213 ~~i~~lr~~~~~PvivKgV~---~~~dA~~a~~~GvD~I~vsn~GG--r-------~~d----~~~~t~~~L~ev~~av~ 276 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVL---TREDAIKAVEVGVAGIIVSNHGA--R-------QLD----YSPATISVLEEVVQAVG 276 (364)
T ss_pred HHHHHHHhccCCCEEEecCC---CHHHHHHHHhcCCCEEEEeCCCc--C-------CCC----CChHHHHHHHHHHHHHh
Confidence 56788888889999888663 35668889999999988762 21 0 011 11457889999998874
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
. ++|||++|||.++.|+.++|++||++|++|++|+...++...+.+++.+...
T Consensus 277 ~-~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l 329 (364)
T PLN02535 277 G-RVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEML 329 (364)
T ss_pred c-CCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHH
Confidence 2 6999999999999999999999999999999999998888888998887654
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-11 Score=109.39 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=47.0
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
..+-+|.+......+|||+.|||.+..++.+||.+||+.|+||.-+..+.|++..
T Consensus 341 TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGe 395 (503)
T KOG2550|consen 341 TAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGE 395 (503)
T ss_pred cchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcc
Confidence 3455566554445899999999999999999999999999999999999999863
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=113.54 Aligned_cols=115 Identities=25% Similarity=0.272 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC--CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~--G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.|+++|+.|+.|+.|+-+. ..+.++.+.+.|++.|+++. |... + ...+++..||+++++
T Consensus 213 W~di~wlr~~~~~PiivKgV~---~~~dA~~a~~~Gvd~I~VsnhGGrql----------d----~~~~t~~~L~ei~~a 275 (367)
T PLN02493 213 WKDVQWLQTITKLPILVKGVL---TGEDARIAIQAGAAGIIVSNHGARQL----------D----YVPATISALEEVVKA 275 (367)
T ss_pred HHHHHHHHhccCCCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCCC----------C----CchhHHHHHHHHHHH
Confidence 366888999999999888775 47788899999999998863 2211 0 114678999999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+.. ++|||++|||.+|.|+.++|++||++|.+|++|+...++..++...+.|-.
T Consensus 276 v~~-~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~ 329 (367)
T PLN02493 276 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 329 (367)
T ss_pred hCC-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 743 699999999999999999999999999999999998888888875555544
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=97.87 Aligned_cols=158 Identities=16% Similarity=0.269 Sum_probs=120.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC---------CcHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------PHNENIKA 82 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------~~~~~~~~ 82 (300)
|+=..||..-..-+.||.|.-.+|..|+...+ . +.|+.+|+..+.|+ ++++..+ |+.+.++.
T Consensus 23 al~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~g-v-------~dIkai~~~v~vPI-IGIiKrd~~~s~v~ITptlkeVd~ 93 (229)
T COG3010 23 ALPGEPLDSPEIVAAMALAAEQGGAVGIRIEG-V-------EDIKAIRAVVDVPI-IGIIKRDYPDSPVRITPTLKEVDA 93 (229)
T ss_pred cCCCCCCcchhHHHHHHHHHHhCCcceEeecc-h-------hhHHHHHhhCCCCe-EEEEecCCCCCCceecccHHHHHH
Confidence 33445675222346899998999999987652 1 46788898899997 6666532 34788999
Q ss_pred HHHcCCcEEEEcCC---CC---cHHHHHHHHHCCCeEeec---------------------------------cChhchH
Q 022271 83 ILSEKVAVLQVSWG---EY---SEELVLEAHSAGVKVVPQ---------------------------------DGLISLL 123 (300)
Q Consensus 83 ~~e~g~~~i~~~~G---~~---~~~~v~~~~~~G~~v~~~---------------------------------~~~~~ll 123 (300)
+.+.|+++|.+.+- +| -.+++.+.|..|...+.+ .+.+.|+
T Consensus 94 L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 94 LAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred HHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHH
Confidence 99999999988641 12 246677767777777765 3467788
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.++.++ +++|||.|.+.+++.+++++.+||++|.+|++....+| +...|-+++.+
T Consensus 174 k~l~~~----~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~--It~~F~~~ik~ 228 (229)
T COG3010 174 KQLSDA----GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE--ITQWFVDAIKS 228 (229)
T ss_pred HHHHhC----CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH--HHHHHHHHHhc
Confidence 888874 79999999999999999999999999999999988876 56666666543
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-10 Score=100.91 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=101.6
Q ss_pred CCCCCCcHHHHHHHHhCCceEEecCCC-------------------C-CC----HHHHHHHHHHHHhhcCCcEEeeeecC
Q 022271 18 LGPDISGPELVAAVANAGGLGLLRAPD-------------------W-EA----PDYLRDLIRKTRSLTERPFGVGVVLA 73 (300)
Q Consensus 18 M~~g~s~~~la~avs~aGglG~i~~~~-------------------~-~~----~~~l~~~i~~~r~~~~~P~gvnl~~~ 73 (300)
|+ |+++++++.+....=|+-+|+..+ + .+ .+.+.+++.+++ .+.|+.+|+-..
T Consensus 1 ma-g~~d~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~--~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MA-GITDAEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAE--SRALVSVNVRFV 77 (231)
T ss_pred CC-CcchHHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHh--hcCCEEEEEecC
Confidence 88 899999999876545566676432 1 11 245667777775 345899999876
Q ss_pred CCc--HHHHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCCCeEeec----------------
Q 022271 74 FPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQ---------------- 116 (300)
Q Consensus 74 ~~~--~~~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G~~v~~~---------------- 116 (300)
.+. .+.++.+ +.++++|.+++|||-+ ++++.+++.++.|...
T Consensus 78 ~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHH
Confidence 543 2333443 4579999998888642 2334444445554432
Q ss_pred ---------------c----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ---------------D----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ---------------~----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+..+.++++.++ ++|||+.|||.|.+|+.+++..|||+||+|+..+.
T Consensus 157 l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 1 13677888888762 49999999999999999999999999999998764
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=107.68 Aligned_cols=121 Identities=29% Similarity=0.363 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchH
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLL 123 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll 123 (300)
.+|.--.+.|+.+|+.|+.|+-++-+. ..+.+..++|+|++.|.++ .|+.-+ .+ ..++..|
T Consensus 206 id~Sl~W~Di~wLr~~T~LPIvvKGil---t~eDA~~Ave~G~~GIIVSNHGgRQlD-~v-------------pAtI~~L 268 (363)
T KOG0538|consen 206 IDPSLSWKDIKWLRSITKLPIVVKGVL---TGEDARKAVEAGVAGIIVSNHGGRQLD-YV-------------PATIEAL 268 (363)
T ss_pred CCCCCChhhhHHHHhcCcCCeEEEeec---ccHHHHHHHHhCCceEEEeCCCccccC-cc-------------cchHHHH
Confidence 455556778999999999999988776 3567888999999988765 333211 11 4588999
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|+|++++.+ ++||+..||+++|.|+.+||+|||.+|.+|+++++.--|......++.|-=
T Consensus 269 ~Evv~aV~~-ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~i 328 (363)
T KOG0538|consen 269 PEVVKAVEG-RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDI 328 (363)
T ss_pred HHHHHHhcC-ceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHH
Confidence 999999965 799999999999999999999999999999999999999999988887654
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-11 Score=110.24 Aligned_cols=115 Identities=25% Similarity=0.273 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC--CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW--GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~--G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.|+++|+.|+.|+.|+-+. ..+.++.+.+.|++.|.++. |... + ...+++..+|+++++
T Consensus 212 W~dl~wlr~~~~~PvivKgV~---~~~dA~~a~~~Gvd~I~VsnhGGrql--------d------~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVL---TGEDARIAIQAGAAGIIVSNHGARQL--------D------YVPATISALEEVVKA 274 (366)
T ss_pred HHHHHHHHhccCCCEEeecCC---CHHHHHHHHhcCCCEEEECCCCcCCC--------C------CchhHHHHHHHHHHH
Confidence 367888999999999988775 46788899999999998863 2210 0 114578999999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+.. ++|||++|||.+|.|++++|++||++|.+|++|+...+...++...+.|-.
T Consensus 275 ~~~-~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~ 328 (366)
T PLN02979 275 TQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 328 (366)
T ss_pred hCC-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 743 699999999999999999999999999999999998888888876555554
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=107.06 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=104.6
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHH-H-H-hhcCCcEEeeeecCCCc--HHHHHHHHHc
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRK-T-R-SLTERPFGVGVVLAFPH--NENIKAILSE 86 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~-~-r-~~~~~P~gvnl~~~~~~--~~~~~~~~e~ 86 (300)
|++.|||+ |+|+..+...+.+-|..++.-+. |.+.+.+...-.+ . + .-.+.|++++|....+. .+.++.+.+.
T Consensus 2 ~~~lAPM~-g~Td~~fR~l~~~~g~~~~~~TE-Mv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPML-DWTDRHFRYFLRLLSKHTLLYTE-MITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 78999998 89999999998888876666553 4444433322111 1 1 11368999999998764 4556677778
Q ss_pred CCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec------------------------------
Q 022271 87 KVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ------------------------------ 116 (300)
Q Consensus 87 g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~------------------------------ 116 (300)
+++.|.+++|||.. +++..+++ .++.|...
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 99999999988632 22222222 12222211
Q ss_pred ----c-------C---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ----D-------G---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ----~-------~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. + .+..+.++++.+ .++|||+.|||.|.+|+.+++. ||||||+|+.++..+
T Consensus 160 vHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~--~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP 230 (318)
T TIGR00742 160 VHARKAWLSGLSPKENREIPPLRYERVYQLKKDF--PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENP 230 (318)
T ss_pred EeCCchhhcCCCccccccCCchhHHHHHHHHHhC--CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCC
Confidence 0 0 123344555544 2699999999999999999996 999999999999864
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-10 Score=101.89 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=104.6
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCC----------------------------CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~~~l~~~i~~~r 59 (300)
.++.||+.|. + ..++.+........|++|++-.... ..++...+.+++.+
T Consensus 8 ~~~nP~~~aa-g-~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 85 (296)
T cd04740 8 RLKNPVILAS-G-TFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWL 85 (296)
T ss_pred EcCCCCEECC-C-CCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHh
Confidence 3678999873 1 1235556666688888888733210 01244555555555
Q ss_pred hhcCCcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcCCCCc---------------HHHHHHHHHC-CCeEeec-----
Q 022271 60 SLTERPFGVGVVLAFP--HNENIKAILSEKVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQ----- 116 (300)
Q Consensus 60 ~~~~~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~G~~~---------------~~~v~~~~~~-G~~v~~~----- 116 (300)
+..+.|+++|+....+ +.+.++.+.+.|++.|.+++++|. .++++.+++. ++.++..
T Consensus 86 ~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~ 165 (296)
T cd04740 86 REFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV 165 (296)
T ss_pred hcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc
Confidence 5567899999987653 245667777889999988776541 1334444433 3333321
Q ss_pred --------------------c---------------------C----------hhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 117 --------------------D---------------------G----------LISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 117 --------------------~---------------------~----------~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
. + .+.++.++++.+ ++|||+.|||.|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~ 242 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGGIAS 242 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEECCCCC
Confidence 0 0 124555666665 799999999999
Q ss_pred hHHHHHHHHCCCcEEEeccccccC
Q 022271 146 ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++++.+++.+|||+|++||.++.-
T Consensus 243 ~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 243 GEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHHHHcCCCEEEEchhhhcC
Confidence 999999999999999999999994
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-11 Score=110.33 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-----CCcHHHHHHHHHCCCeEeeccC
Q 022271 45 WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-----EYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-----~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
..+++.|.+.|.++|+++ ++|++|++......+.....+.+.++|+|.++.+ .-|....+ ..| .+
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d---~~G------lP 254 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMD---HVG------LP 254 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHH---HC---------
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHh---hCC------Cc
Confidence 358899999999999998 8999999987665555555588999999999742 11223333 344 45
Q ss_pred hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 119 LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 119 ~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
+...++++.+.+.. .++.++++|||.++.|++++++||||+|.+||.+|.+-.|.
T Consensus 255 ~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~ 313 (368)
T PF01645_consen 255 TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCI 313 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchH
Confidence 66677777776532 36999999999999999999999999999999999998875
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=106.94 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=106.6
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH-H-HHHH-hhcCCcEEeeeecCCCc--HHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-I-RKTR-SLTERPFGVGVVLAFPH--NENIKA 82 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~-i-~~~r-~~~~~P~gvnl~~~~~~--~~~~~~ 82 (300)
--+.|++.|||+ |+|+..+..-+.+.|+-+++.+. |.+.+.+... . +.++ .-.+.|+.+++....+. .+.++.
T Consensus 8 ~~~~~~~lAPM~-g~td~~fR~~~~~~g~~~~~~te-mv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~ 85 (333)
T PRK11815 8 LPSRRFSVAPMM-DWTDRHCRYFHRLLSRHALLYTE-MVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKL 85 (333)
T ss_pred CCCCCEEEeCCC-CCcCHHHHHHHHHhCCCCEEEEC-CEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHH
Confidence 346799999998 89999999988888875554442 3333322211 1 1111 11367999999998764 455677
Q ss_pred HHHcCCcEEEEcCCCCcH-------------------HHHHHHHHC-CCeEeec--------------------------
Q 022271 83 ILSEKVAVLQVSWGEYSE-------------------ELVLEAHSA-GVKVVPQ-------------------------- 116 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~-G~~v~~~-------------------------- 116 (300)
+.+.|++.|.+++|||.. ++++.++++ +..+...
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~ 165 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGC 165 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCC
Confidence 777899999999888622 333433331 2222210
Q ss_pred --------c----------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 --------D----------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 --------~----------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. ..+..+.++++.+ .++|||+.|||.|.+|+.+++. |||+|++|+.++.-+.
T Consensus 166 d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~--~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 166 DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF--PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 0 0133455555543 2799999999999999999997 7999999999998753
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-11 Score=109.78 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=91.0
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-----cCCcEEeeeecCCCc--HHHHHHHHHc
Q 022271 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-----TERPFGVGVVLAFPH--NENIKAILSE 86 (300)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-----~~~P~gvnl~~~~~~--~~~~~~~~e~ 86 (300)
|.|||. |+|+..|...+.+.|+-+...+. +.+.+.+-..-++.... .+.|+.++|..+.+. .+.++.+.+.
T Consensus 1 ~LAPM~-g~td~~fR~l~~~~g~~~~~~te-mi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~ 78 (309)
T PF01207_consen 1 ILAPMA-GVTDLPFRRLCREFGADDLTYTE-MISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAEL 78 (309)
T ss_dssp -E---T-TTSSHHHHHHHHCCTSSSBEE-S--EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCT
T ss_pred CccCCC-CCchHHHHHHHHHHCCCeEEEcC-CEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhcc
Confidence 468998 89999999999999988666553 55555443332222221 246999999998764 3455666667
Q ss_pred CCcEEEEcCCCCcHHHH-------------------HHHHH-CCCeEeec------------------------------
Q 022271 87 KVAVLQVSWGEYSEELV-------------------LEAHS-AGVKVVPQ------------------------------ 116 (300)
Q Consensus 87 g~~~i~~~~G~~~~~~v-------------------~~~~~-~G~~v~~~------------------------------ 116 (300)
+++.|.+++|||.+.++ ..+++ .++.|-..
T Consensus 79 ~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 79 GFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp T-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEe
Confidence 99999999999743222 22222 23333211
Q ss_pred ----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccC
Q 022271 117 ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 169 (300)
Q Consensus 117 ----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t 169 (300)
...+..+.++++.+ ++|||+.|||.+.+|+.+.+.. |+||||+|+..+..
T Consensus 159 ~Rt~~q~~~~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n 219 (309)
T PF01207_consen 159 GRTRKQRYKGPADWEAIAEIKEAL---PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGN 219 (309)
T ss_dssp CS-TTCCCTS---HHHHHHCHHC----TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-
T ss_pred cCchhhcCCcccchHHHHHHhhcc---cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhc
Confidence 12456777888877 7999999999999999999986 99999999887765
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=111.86 Aligned_cols=58 Identities=33% Similarity=0.336 Sum_probs=50.1
Q ss_pred hhchHHHHHHhhC------CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 119 LISLLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 119 ~~~ll~~v~~~~~------~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
.++.+++++++.+ +.++|||+.|||.++.|+++||++|||+|++|+.|..|.||+..-
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~ 394 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNK 394 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcE
Confidence 5667888887652 124999999999999999999999999999999999999998763
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=105.80 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=114.7
Q ss_pred ccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHH----HHHHHh-hcCCcEEeeeecCCCc--HH
Q 022271 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKTRS-LTERPFGVGVVLAFPH--NE 78 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~----i~~~r~-~~~~P~gvnl~~~~~~--~~ 78 (300)
....+.+++.|||+ |+|+..+..-+..-|+.+.+.+. +.+...+..- +..... ..+.|+.|++....|. .+
T Consensus 6 ~~~~~~~~~lAPM~-gvtd~~fR~l~~~~ga~~~~~TE-mv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~e 83 (323)
T COG0042 6 LIELRNRVILAPMA-GVTDLPFRRLARELGAYDLLYTE-MVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAE 83 (323)
T ss_pred cccccCcEEEecCC-CCccHHHHHHHHHhCCCceEEEc-cEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHH
Confidence 34468899999998 89999999988776764555543 4333322211 111111 1257999999998874 56
Q ss_pred HHHHHHHcCCcEEEEcCCCCcH-------------------HHHHHHHHCC--CeEeec---------------------
Q 022271 79 NIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAG--VKVVPQ--------------------- 116 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~~G--~~v~~~--------------------- 116 (300)
..+.+.+.++++|.+++|||.+ ++++.++++. +.|-..
T Consensus 84 aA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~ 163 (323)
T COG0042 84 AAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILED 163 (323)
T ss_pred HHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHh
Confidence 6778888999999999999743 3334444433 444321
Q ss_pred -------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcc
Q 022271 117 -------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~E 171 (300)
...+..+.++++.++ ++|||+.|+|.|.+++.++|. -|+|||++|...+.-+.
T Consensus 164 ~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 164 AGADALTVHGRTRAQGYLGPADWDYIKELKEAVP--SIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred cCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC--CCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCc
Confidence 125667888888883 399999999999999999999 58999999987766543
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=109.99 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
.+.|+++|+.++.|+.++=+ ...+.++.+.+.|++.|+++. .--+. .+. ..+++..||++++++.
T Consensus 242 W~~i~~lr~~~~~pvivKgV---~~~~dA~~a~~~G~d~I~vsn-hGGr~-----~d~------~~~t~~~L~ei~~~~~ 306 (383)
T cd03332 242 WEDLAFLREWTDLPIVLKGI---LHPDDARRAVEAGVDGVVVSN-HGGRQ-----VDG------SIAALDALPEIVEAVG 306 (383)
T ss_pred HHHHHHHHHhcCCCEEEecC---CCHHHHHHHHHCCCCEEEEcC-CCCcC-----CCC------CcCHHHHHHHHHHHhc
Confidence 46788899999999988844 346788899999999998863 11110 011 2578999999999885
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+ ++|||++|||.+|.|++++|++||++|.+|++|+..-.....+...+.|
T Consensus 307 ~-~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l 356 (383)
T cd03332 307 D-RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVL 356 (383)
T ss_pred C-CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHH
Confidence 3 6999999999999999999999999999999999654333333333333
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=108.09 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=85.9
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.|+++|+.++.|+.++-+. ..+.++.+.+.|++.|+++ .|.. ++ + ..+++..++++++++
T Consensus 211 ~~l~~lr~~~~~PvivKgv~---~~~dA~~a~~~G~d~I~vsnhGGr~----ld-----~-----~~~~~~~l~~i~~a~ 273 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQ---SPEDADVAINAGADGIWVSNHGGRQ----LD-----G-----GPASFDSLPEIAEAV 273 (351)
T ss_pred HHHHHHHHHhCCcEEEecCC---CHHHHHHHHHcCCCEEEEeCCCCcc----CC-----C-----CchHHHHHHHHHHHh
Confidence 55778888889999998542 4577889999999999884 2321 10 1 135678899999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.. ++|||++|||.++.|+.++|++||++|++|++|+..--....+...+.+.
T Consensus 274 ~~-~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~ 325 (351)
T cd04737 274 NH-RVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLE 325 (351)
T ss_pred CC-CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHH
Confidence 42 69999999999999999999999999999999998754444444444433
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=109.27 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-eccChhchHHHHHHhh
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV-PQDGLISLLPMVVDLI 130 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~-~~~~~~~ll~~v~~~~ 130 (300)
.+.|+++|+.++.|+.++=+. ..+.++.+.+.|++.|.++. . |+... ...+++..++++++++
T Consensus 234 W~di~~lr~~~~~pvivKgV~---s~~dA~~a~~~Gvd~I~Vs~-h------------GGr~~d~~~~t~~~L~~i~~a~ 297 (381)
T PRK11197 234 WKDLEWIRDFWDGPMVIKGIL---DPEDARDAVRFGADGIVVSN-H------------GGRQLDGVLSSARALPAIADAV 297 (381)
T ss_pred HHHHHHHHHhCCCCEEEEecC---CHHHHHHHHhCCCCEEEECC-C------------CCCCCCCcccHHHHHHHHHHHh
Confidence 356999999999999887763 57789999999999998763 1 11110 0146789999999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.. ++|||++|||.+|.|+.++|++||++|++|++|+..-.+...+...+.|-.
T Consensus 298 ~~-~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~ 350 (381)
T PRK11197 298 KG-DITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDL 350 (381)
T ss_pred cC-CCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHH
Confidence 42 699999999999999999999999999999999998766666666665554
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=99.72 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=103.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHHh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTRS 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r~ 60 (300)
++.||+.||+..+. +.+....+.++| +|++-... + ...+...+.++..+.
T Consensus 10 l~npi~~aag~~~~-~~~~~~~~~~~G-~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~ 87 (300)
T TIGR01037 10 FKNPLILASGIMGS-GVESLRRIDRSG-AGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVRE 87 (300)
T ss_pred CCCCCEeCCcCCCC-CHHHHHHHHHcC-CcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhc
Confidence 67899999953355 445555566764 67664310 0 123333334444333
Q ss_pred hcCCcEEeeeecCCCc--HHHHHHHHHc--CCcEEEEcCCCCc---------------HHHHHHHHHC-CCeEeec----
Q 022271 61 LTERPFGVGVVLAFPH--NENIKAILSE--KVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQ---- 116 (300)
Q Consensus 61 ~~~~P~gvnl~~~~~~--~~~~~~~~e~--g~~~i~~~~G~~~---------------~~~v~~~~~~-G~~v~~~---- 116 (300)
..+.|+.+|+....+. .+.++.+.+. +++.|.+++|||. .++++.+++. +..+...
T Consensus 88 ~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~ 167 (300)
T TIGR01037 88 EFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPN 167 (300)
T ss_pred cCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3457999999876542 3345555554 3899998887752 2334444332 3333221
Q ss_pred ---------------------c----C---------------------------hhchHHHHHHhhCCCCCcEEEccCCC
Q 022271 117 ---------------------D----G---------------------------LISLLPMVVDLIGDRDIPIIAAGGIV 144 (300)
Q Consensus 117 ---------------------~----~---------------------------~~~ll~~v~~~~~~~~iPViaaGGI~ 144 (300)
. + .+..+.++++.+ ++|||+.|||.
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~---~ipvi~~GGI~ 244 (300)
T TIGR01037 168 VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV---DIPIIGVGGIT 244 (300)
T ss_pred hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEECCCC
Confidence 0 0 013455566655 79999999999
Q ss_pred ChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 145 DARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 145 ~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+++++.+++..|||+|++||.++.-.+ .-..+++.+.
T Consensus 245 s~~da~~~l~~GAd~V~igr~~l~~p~--~~~~i~~~l~ 281 (300)
T TIGR01037 245 SFEDALEFLMAGASAVQVGTAVYYRGF--AFKKIIEGLI 281 (300)
T ss_pred CHHHHHHHHHcCCCceeecHHHhcCch--HHHHHHHHHH
Confidence 999999999999999999999998752 3333444443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=108.28 Aligned_cols=170 Identities=23% Similarity=0.263 Sum_probs=113.3
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +.+||+.+||+ +.. ...++.+..++|..-.++.....+.| ++.+. ...|...++..+..
T Consensus 50 t~~lG~~~s~P~~iaP~~-~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e----~ia~~---~~~~~~~Qly~~~d 121 (356)
T PF01070_consen 50 TTFLGQKLSMPFFIAPMG-GGGLAHPDGERALARAAAKAGIPMMLSSQSSASLE----EIAAA---SGGPLWFQLYPPRD 121 (356)
T ss_dssp EEETTEEESSSEEEEEES-TGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHH----HHHHH---CTSEEEEEEEGBSS
T ss_pred eeeCCccCCCCeEEcchh-hhhhhccchHHHHHHHHhccCcceeccCCccCCHH----HHHhh---ccCCeEEEEEEecC
Confidence 45677 57899999998 333 24899999999988888765333443 33322 23788899987654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCC----------------Cc-------------------------------------
Q 022271 76 H---NENIKAILSEKVAVLQVSWGE----------------YS------------------------------------- 99 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~----------------~~------------------------------------- 99 (300)
. .+.++.+.+.|++.+.++... |+
T Consensus 122 ~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 201 (356)
T PF01070_consen 122 RELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAA 201 (356)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHH
Confidence 2 456777888899888663211 00
Q ss_pred ------------HHHHHHHH-HCCCeEeec--------------------------------cChhchHHHHHHhhCCCC
Q 022271 100 ------------EELVLEAH-SAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 100 ------------~~~v~~~~-~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~ 134 (300)
.+.++.++ ...++++.. .+++..|++++++++ .+
T Consensus 202 ~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~-~~ 280 (356)
T PF01070_consen 202 RFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVG-DD 280 (356)
T ss_dssp HHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHT-TS
T ss_pred HHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhc-CC
Confidence 01122221 233443322 357889999999884 37
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+|||+.|||.+|.|++++|+|||++|.+|..|+..-.....+...+.|
T Consensus 281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~ 328 (356)
T PF01070_consen 281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVL 328 (356)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999976444444444443
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=98.48 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=108.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCC---------C--------------------------C--CCHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D--------------------------W--EAPDY 50 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~--------------------------~--~~~~~ 50 (300)
.++.||+.|... ...+.++.....++| +|.+-.. + + ..++.
T Consensus 7 ~~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~ 84 (289)
T cd02810 7 KLKNPFGVAAGP-LLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDV 84 (289)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHH
Confidence 367899998865 446788888877776 4443110 0 0 12456
Q ss_pred HHHHHHHHHhh-cCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCc--------------HHHHHHHHHC-CCe
Q 022271 51 LRDLIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (300)
Q Consensus 51 l~~~i~~~r~~-~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~--------------~~~v~~~~~~-G~~ 112 (300)
+.+++.+.++. .+.|+.+|+....+. .+.++.+.+.|+++|.+++++|. .++++.+++. +..
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~p 164 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIP 164 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCC
Confidence 66777777665 689999999876432 45677888889999999887751 1344444443 323
Q ss_pred Eeec---------------------------cC-------------------------------hhchHHHHHHhhCCCC
Q 022271 113 VVPQ---------------------------DG-------------------------------LISLLPMVVDLIGDRD 134 (300)
Q Consensus 113 v~~~---------------------------~~-------------------------------~~~ll~~v~~~~~~~~ 134 (300)
++.. .+ .+.++.++++.+. .+
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~-~~ 243 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LD 243 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC-CC
Confidence 2211 00 1223445555442 16
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+|||+.|||.|++++.+++.+|||+|++||+++..
T Consensus 244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999999999999999999999975
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=100.74 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHHH--------HH---HCCCeE
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE--------AH---SAGVKV 113 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~~--------~~---~~G~~v 113 (300)
.+++.+.+.++.+|+.++.|+.|++...... .+.++.+.+.|++.|+++--.+....++. .| ..|...
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 4789999999999998899999998764432 46778889999999876421111001110 11 011111
Q ss_pred eec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 114 VPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 114 ~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .-.+..+.++++.+.. ++|||+.|||.+++|+.+++.+|||+||+||.++.-
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~-~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~ 287 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEP-GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQ 287 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCC-CCcEEEECCCCCHHHHHHHHHcCCChheEceeeccc
Confidence 110 1136788888888732 699999999999999999999999999999999874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=94.01 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=98.7
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHH-----HhhcCCcEEeeeecCCCc--HHHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKT-----RSLTERPFGVGVVLAFPH--NENIKAIL 84 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~-----r~~~~~P~gvnl~~~~~~--~~~~~~~~ 84 (300)
|+++|||. ++|+..|...+.+.| ..++-+. +...+.+...-++. +...+.|+.+++....+. .+..+.+.
T Consensus 1 ~~~~aPm~-~~~~~~fR~l~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~ 77 (231)
T cd02801 1 KLILAPMV-GVTDLPFRLLCRRYG-ADLVYTE-MISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE 77 (231)
T ss_pred CeEeCCCC-CCcCHHHHHHHHHHC-CCEEEec-CEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58899997 899999999988888 4444432 32222221111111 112357888888765442 44556666
Q ss_pred HcCCcEEEEcCCCCc-------------------HHHHHHHHH-----------------------------CCCeEeec
Q 022271 85 SEKVAVLQVSWGEYS-------------------EELVLEAHS-----------------------------AGVKVVPQ 116 (300)
Q Consensus 85 e~g~~~i~~~~G~~~-------------------~~~v~~~~~-----------------------------~G~~v~~~ 116 (300)
+.|.+.|.+++|+|. .++++.+++ .|+..+..
T Consensus 78 ~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEE
Confidence 678888877766631 133333332 23222210
Q ss_pred -----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCcc
Q 022271 117 -----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~E 171 (300)
...+..+.++++.+ ++||+++|||.+.+++.+++.. |||+|++|+.++.-++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~ 221 (231)
T cd02801 158 HGRTREQRYSGPADWDYIAEIKEAV---SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221 (231)
T ss_pred CCCCHHHcCCCCCCHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCH
Confidence 01234445555554 7999999999999999999998 8999999999998754
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-09 Score=96.89 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCcH--------------HHHHHHHH-CC
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSE--------------ELVLEAHS-AG 110 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~--------------~~v~~~~~-~G 110 (300)
++...+.++++++..+.|+.+|+....+. .+.++.+.+.+++.|.+++++|+. ++++.+++ ..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS 165 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Confidence 45566667667666678999999875543 356667777889999887665321 22333332 23
Q ss_pred CeEeec-------------------------cC----------------------------hhchHHHHHHhhCCCCCcE
Q 022271 111 VKVVPQ-------------------------DG----------------------------LISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 111 ~~v~~~-------------------------~~----------------------------~~~ll~~v~~~~~~~~iPV 137 (300)
+.++.. .. .+..+.++++.+ ++||
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipI 242 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADL 242 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCE
Confidence 333321 00 012233344444 7999
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|+.|||.|++|+.++|.+|||+||+||.++.-
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 99999999999999999999999999999983
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=100.07 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
..+.|+++|+.++.|+-++=+ ...+.++.+.+.|++.|.++. |... .+ . ..+++..+++++++
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV---~~~eda~~a~~~G~d~I~VSnhGGrq---ld----~------~~~~~~~L~ei~~~ 287 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI---VTAEDAKRCIELGADGVILSNHGGRQ---LD----D------AIAPIEALAEIVAA 287 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC---CCHHHHHHHHHCCcCEEEECCCCcCC---Cc----C------CccHHHHHHHHHHH
Confidence 345799999999999877654 357789999999999998763 2111 11 0 13578899999998
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+ ++|||+.|||.+|.|+.++|++||++|++|++|+..-.....+...+.+
T Consensus 288 ~---~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l 337 (361)
T cd04736 288 T---YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVL 337 (361)
T ss_pred h---CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHH
Confidence 7 6999999999999999999999999999999999765444444444433
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=99.20 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--CCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG 131 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~--~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~ 131 (300)
.|+++|+.++.|+.|+-+. ..+.++.+.+.|++.|.++ .|.... .....+..|++++++++
T Consensus 219 ~i~~l~~~~~~PvivKGv~---~~eda~~a~~~Gvd~I~VS~HGGrq~~--------------~~~a~~~~L~ei~~av~ 281 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVKGPQ---CPEDADRALKAGASGIWVTNHGGRQLD--------------GGPAAFDSLQEVAEAVD 281 (367)
T ss_pred HHHHHHHhcCCCEEEeCCC---CHHHHHHHHHcCcCEEEECCcCccCCC--------------CCCcHHHHHHHHHHHhC
Confidence 4555555566666555332 2455566666666655433 121100 01346788999999874
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
. ++|||+.|||.++.|+.++|++||++|++|..|+..--....+...+.|-.
T Consensus 282 ~-~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~ 333 (367)
T TIGR02708 282 K-RVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEY 333 (367)
T ss_pred C-CCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 2 699999999999999999999999999999999997555556666665544
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=98.21 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCceEE----ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEE
Q 022271 25 PELVAAVANAGGLGL----LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQ 92 (300)
Q Consensus 25 ~~la~avs~aGglG~----i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~ 92 (300)
.+++..+.+++-.+. ++|+|. .++|.+.+.++++++.+++|+.|+|.++..+ .+.++.+.++|.+.|+
T Consensus 112 ~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~ 191 (310)
T COG0167 112 ADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLI 191 (310)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 477777788773222 355541 3788999999999999999999999973322 5567888899999987
Q ss_pred EcCCCCcHHHHHH-H------HHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 93 VSWGEYSEELVLE-A------HSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 93 ~~~G~~~~~~v~~-~------~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..--..+...++. - .+.|+..... .-.+.++.++.+.+.. ++|||+.|||.|++|+.+.+.+||+.||+|
T Consensus 192 ~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 192 AINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred EEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCC-CCcEEEecCcCcHHHHHHHHHcCCchheee
Confidence 5421111111111 0 1233333321 1246778888888743 699999999999999999999999999999
Q ss_pred cccccC
Q 022271 164 TRFVAS 169 (300)
Q Consensus 164 T~fl~t 169 (300)
|+++.-
T Consensus 271 Tal~~~ 276 (310)
T COG0167 271 TALIYK 276 (310)
T ss_pred eeeeee
Confidence 999876
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=96.73 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=105.8
Q ss_pred ccceecCCCCCCCCc---HHHHHHHHhCCceEE---ecCCCC-----------CCHHHHHHHHHHHHhhcCCcEEeeeec
Q 022271 10 EYGIVQAPLGPDISG---PELVAAVANAGGLGL---LRAPDW-----------EAPDYLRDLIRKTRSLTERPFGVGVVL 72 (300)
Q Consensus 10 ~~Pii~apM~~g~s~---~~la~avs~aGglG~---i~~~~~-----------~~~~~l~~~i~~~r~~~~~P~gvnl~~ 72 (300)
+.|+|.-=|+ +.+. .+++..+.++|.=++ ++|++. .+++.+++.++.+|+.++.|+.|+|.+
T Consensus 113 ~~pvIaSi~~-~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 113 DRILIASIME-EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CCcEEEEccC-CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 3588875544 3553 367777888774332 344432 478889999999999999999999997
Q ss_pred CCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH---------HCCCeEeec--cChhchHHHHHHhhCC---CCC
Q 022271 73 AFPH-NENIKAILSEKVAVLQVSWGEYSEELVL--EAH---------SAGVKVVPQ--DGLISLLPMVVDLIGD---RDI 135 (300)
Q Consensus 73 ~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~---------~~G~~v~~~--~~~~~ll~~v~~~~~~---~~i 135 (300)
+.++ .+.++.+.+.|++.|+..--.++...++ ..+ ..|...... .-.+..+.++++.++. .++
T Consensus 192 n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~i 271 (385)
T PLN02495 192 NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDR 271 (385)
T ss_pred ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCC
Confidence 6644 4567888899999987642111111121 100 112222110 0023445556665521 159
Q ss_pred cEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 136 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|||+.|||.+++|+.+++.+||+.||++|+++.-
T Consensus 272 pIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 272 SLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence 9999999999999999999999999999999974
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-08 Score=86.17 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=97.4
Q ss_pred CCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEe-eeecC-------CCcHHHHHHHHHcC
Q 022271 16 APLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGV-GVVLA-------FPHNENIKAILSEK 87 (300)
Q Consensus 16 apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gv-nl~~~-------~~~~~~~~~~~e~g 87 (300)
+||+-+..-.+++.+..++|.-+ +.. .++ +.++++|+.++.|+-. ..... .++.+.++.+.+.|
T Consensus 21 ~~~~~~~~i~~~a~~~~~~G~~~-~~~---~~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG 92 (219)
T cd04729 21 EPLHSPEIMAAMALAAVQGGAVG-IRA---NGV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG 92 (219)
T ss_pred CCcCcHHHHHHHHHHHHHCCCeE-EEc---CCH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC
Confidence 56653223357777777777654 332 244 3566677667889842 11110 12355889999999
Q ss_pred CcEEEEcCCC-------CcHHHHHHHHHCC-CeEeec-------------------c--------------ChhchHHHH
Q 022271 88 VAVLQVSWGE-------YSEELVLEAHSAG-VKVVPQ-------------------D--------------GLISLLPMV 126 (300)
Q Consensus 88 ~~~i~~~~G~-------~~~~~v~~~~~~G-~~v~~~-------------------~--------------~~~~ll~~v 126 (300)
+++|.+.... ...++++++++.| ..++.. . ..+.++.++
T Consensus 93 ad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i 172 (219)
T cd04729 93 ADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKEL 172 (219)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHH
Confidence 9988774221 2356777777777 554432 0 123566777
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
++.+ ++||++.|||.+++++.+++.+|||+|++||.++-..
T Consensus 173 ~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~ 213 (219)
T cd04729 173 RKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPE 213 (219)
T ss_pred HHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 7665 7999999999999999999999999999999987653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=98.07 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=100.6
Q ss_pred ccceecCCCCCCCCcH---HHHHHHHhCCceEE---ecCCC----C---CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc
Q 022271 10 EYGIVQAPLGPDISGP---ELVAAVANAGGLGL---LRAPD----W---EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~---~la~avs~aGglG~---i~~~~----~---~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~ 76 (300)
+.||+.- +. |.+.. +++..+.++|.=++ ++|.+ . ..++.+.+.++++|+.++.|+.|++.+....
T Consensus 99 ~~pvi~s-i~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~ 176 (325)
T cd04739 99 SIPVIAS-LN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSA 176 (325)
T ss_pred CCeEEEE-eC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 4677753 43 44433 66777777774333 22211 0 1125677889999998899999999865433
Q ss_pred -HHHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH--HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 77 -NENIKAILSEKVAVLQVSWGEYSEELVL--EAH--SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~--~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
.+.++.+.+.|++.|+++...+ ...++ ..+ ..+...... .-.+..+.++++.+ ++|||+.|||.|++|+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~-~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig~GGI~s~~Da 252 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFY-QPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAASGGVHDAEDV 252 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcC-CCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEEECCCCCHHHH
Confidence 5677888999999998863221 11111 100 011110000 11345566666665 7999999999999999
Q ss_pred HHHHHCCCcEEEeccccccC
Q 022271 150 VAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t 169 (300)
.++|.+|||+||+||.++.-
T Consensus 253 ~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 253 VKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred HHHHHcCCCeeEEehhhhhc
Confidence 99999999999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=94.04 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=101.0
Q ss_pred ccceecCCCCCCCCcHHHH---HHHHhCCceEEe----cCCC--------CCCHHHHHHHHHHHHhhcCCcEEeeeecCC
Q 022271 10 EYGIVQAPLGPDISGPELV---AAVANAGGLGLL----RAPD--------WEAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la---~avs~aGglG~i----~~~~--------~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~ 74 (300)
+.|++. -+. |.+..+++ ..+.++|+...+ +|.+ ..+++.+.+.++++|+.++.|+.|++....
T Consensus 91 ~~p~i~-si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 168 (301)
T PRK07259 91 DTPIIA-NVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV 168 (301)
T ss_pred CCcEEE-Eec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 567775 443 44544444 444566622222 2211 136889999999999988999999997543
Q ss_pred Cc-HHHHHHHHHcCCcEEEEcC---CCCcH-----HHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCC
Q 022271 75 PH-NENIKAILSEKVAVLQVSW---GEYSE-----ELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 75 ~~-~~~~~~~~e~g~~~i~~~~---G~~~~-----~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
.+ .+.++.+.+.|++.|.++. |.... .... ...|...... .-.+.++.++++.+ ++|||+.|||
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~--~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GGI 243 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILA--NVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGGI 243 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeec--CCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECCC
Confidence 32 4567788899999887632 21000 0000 0112111100 12467788888877 7999999999
Q ss_pred CChHHHHHHHHCCCcEEEeccccccC
Q 022271 144 VDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.|++++.+++..|||+|++||.++.-
T Consensus 244 ~~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 244 SSAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CCHHHHHHHHHcCCCceeEcHHHhcC
Confidence 99999999999999999999999984
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=98.42 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=102.6
Q ss_pred ccceecCCCCCCC-Cc---HHHHHHHHhCCceEE---ecCCC-----------CCCHHHHHHHHHHHHhhcCCcEEeeee
Q 022271 10 EYGIVQAPLGPDI-SG---PELVAAVANAGGLGL---LRAPD-----------WEAPDYLRDLIRKTRSLTERPFGVGVV 71 (300)
Q Consensus 10 ~~Pii~apM~~g~-s~---~~la~avs~aGglG~---i~~~~-----------~~~~~~l~~~i~~~r~~~~~P~gvnl~ 71 (300)
+.|+|. .+. |. +. .+++..+.++|.=++ ++|++ ..+++.+.+.++.+++.++.|+.|+|.
T Consensus 99 ~~p~i~-si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~ 176 (420)
T PRK08318 99 DRALIA-SIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT 176 (420)
T ss_pred CceEEE-Eec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC
Confidence 367663 443 44 33 355666666663222 23332 147899999999999988999999998
Q ss_pred cCCCc-HHHHHHHHHcCCcEEEEcCCCCcHHHHHH--------HHH---CCCeEeec--cChhchHHHHHHhhCCCCCcE
Q 022271 72 LAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLE--------AHS---AGVKVVPQ--DGLISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 72 ~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~~~v~~--------~~~---~G~~v~~~--~~~~~ll~~v~~~~~~~~iPV 137 (300)
+.... .+.++.+.+.|++.|++.--......++. +|. .|...... .-.+..+.++++++...++||
T Consensus 177 p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipI 256 (420)
T PRK08318 177 PNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPI 256 (420)
T ss_pred CCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCE
Confidence 65443 46678888999999885311111111211 111 11111110 013567777777652126999
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|+.|||.|++|+.+++.+|||+||+||.++.
T Consensus 257 ig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 257 SGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred EeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 9999999999999999999999999999997
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=89.02 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC------CCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA------FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~------~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.+.+.++++|+..+.|+. ++.. ...+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 74 ~~~~~~~~~~~~~r~~~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-DLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 74 INLNKILSILSEVNGEIKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIP-DLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCHHHHHHHHHHHhcCCCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566788888888876677863 3432 234778999999999999887 4553 35666777888776643
Q ss_pred -----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.| ...++.++++.. +.||...+||.+++++.++...||||
T Consensus 151 v~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 151 IAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNING 227 (263)
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCE
Confidence 01 223445555543 89999999999999999999999999
Q ss_pred EEeccccccCcc
Q 022271 160 ICLGTRFVASEE 171 (300)
Q Consensus 160 V~~GT~fl~t~E 171 (300)
|++||+|+-.-+
T Consensus 228 vVVGSalv~~i~ 239 (263)
T CHL00200 228 IVIGSACVQILL 239 (263)
T ss_pred EEECHHHHHHHH
Confidence 999999975443
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=87.37 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC------CCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA------FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~------~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+++.+.++++|+..+.|+. ++.. ...+..++.+.+.|++.+.+. ..|. .++.+.+++.|+..+..
T Consensus 61 ~~~~~~~~~~~~~r~~~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 61 TTLDSVISMLKEVAPQLSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVP-DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCHHHHHHHHHHHhcCCCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4667888889999876777863 3332 234678889999999988876 5553 35666777888776643
Q ss_pred -----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.| +..++.++++.. ++||+...||++++++.+++..||||
T Consensus 138 v~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 138 TTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT---DKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred eCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC---CCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 00 223455555543 89999999999999999999999999
Q ss_pred EEeccccccCc
Q 022271 160 ICLGTRFVASE 170 (300)
Q Consensus 160 V~~GT~fl~t~ 170 (300)
|.+||+|+-..
T Consensus 215 vIVGSalVk~i 225 (250)
T PLN02591 215 VIVGSAMVKAL 225 (250)
T ss_pred EEECHHHHHhh
Confidence 99999997543
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-09 Score=96.90 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=96.7
Q ss_pred cHHHHHHHHhCCce-EE----ecCCC------CCCHHHHHHHHHHHHhhcC-------CcEEeeeecCCC---cHHHHHH
Q 022271 24 GPELVAAVANAGGL-GL----LRAPD------WEAPDYLRDLIRKTRSLTE-------RPFGVGVVLAFP---HNENIKA 82 (300)
Q Consensus 24 ~~~la~avs~aGgl-G~----i~~~~------~~~~~~l~~~i~~~r~~~~-------~P~gvnl~~~~~---~~~~~~~ 82 (300)
..+++..+..++.. .. ++|.+ ..+++.+.+.++.+|+.++ +|+.|+|.+... ..+.++.
T Consensus 153 ~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~ 232 (335)
T TIGR01036 153 KEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADS 232 (335)
T ss_pred HHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHH
Confidence 45777666665521 11 24443 2367888888999887765 899999998765 3556788
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHH---HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 83 ILSEKVAVLQVSWGEYSEELVLEAH---SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~~~v~~~~---~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+.+.|++.|+..--....+.+...+ ..|+..... .-.+.++.++.+.+.. ++|||+.|||.|++|+.+++.+||
T Consensus 233 ~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~-~ipiig~GGI~~~~da~e~l~aGA 311 (335)
T TIGR01036 233 LVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQG-RLPIIGVGGISSAQDALEKIRAGA 311 (335)
T ss_pred HHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence 8899999998652111111111100 122221111 1135667777776632 599999999999999999999999
Q ss_pred cEEEeccccccC
Q 022271 158 QGICLGTRFVAS 169 (300)
Q Consensus 158 dgV~~GT~fl~t 169 (300)
+.||+||+++.-
T Consensus 312 ~~Vqv~ta~~~~ 323 (335)
T TIGR01036 312 SLLQIYSGFIYW 323 (335)
T ss_pred cHHHhhHHHHHh
Confidence 999999999863
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=85.60 Aligned_cols=121 Identities=22% Similarity=0.230 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEeeeecCCC-----cHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec
Q 022271 46 EAPDYLRDLIRKTRSL-TERPFGVGVVLAFP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~-----~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.+.+.++++|+. ++.|+- -++...| .+.+++.+.+.|++.+.+. ..|. .++++.+++.|+..+..
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip-Dlp~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA-DLPLEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC-CCChHHHHHHHHHHHHCCCcEEEE
Confidence 4667888889999875 678873 3333222 3678999999999999887 3443 45667778888764421
Q ss_pred -------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
......+.++++.. +.||++.|||.+++++.+++..||||
T Consensus 147 v~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADg 223 (256)
T TIGR00262 147 VAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADG 223 (256)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 01234555566554 68999999999999999999999999
Q ss_pred EEeccccccCcc
Q 022271 160 ICLGTRFVASEE 171 (300)
Q Consensus 160 V~~GT~fl~t~E 171 (300)
|++||+++-.-|
T Consensus 224 vVvGSaiv~~~~ 235 (256)
T TIGR00262 224 VIVGSAIVKIIE 235 (256)
T ss_pred EEECHHHHHHHH
Confidence 999999986544
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=92.87 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHc--CCcEEEEcCCCCcHHHHH--H----H---HHCCCe
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSE--KVAVLQVSWGEYSEELVL--E----A---HSAGVK 112 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~--g~~~i~~~~G~~~~~~v~--~----~---~~~G~~ 112 (300)
+++.+.+.++++|+.++.|+.|++.+.... .+.++.+.+. |++.|+..--..+...++ + + ...|..
T Consensus 141 ~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~ 220 (294)
T cd04741 141 DFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL 220 (294)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence 789999999999999999999999876532 2344555567 888877431000000111 0 0 011211
Q ss_pred Eeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 113 VVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 113 v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.... .-.+..+.++++.++. ++|||+.|||.|++|+.+++.+|||+||+||.++.
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~-~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPS-EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCC-CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 1110 1134566777777631 59999999999999999999999999999999996
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=92.88 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEeeeecCCC---cHHHHHHHHHcCCcEEEEcCCCCcHHHHH--HH-HHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFP---HNENIKAILSEKVAVLQVSWGEYSEELVL--EA-HSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~-----~P~gvnl~~~~~---~~~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~-~~~G~~v~ 114 (300)
.+++.+.+.++.+|+.++ .|+.|++..... ..+.++.+.+.|++.|.++.......... .. ...|..-.
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 467899999999998875 899999986543 24567778889999998764322111100 00 00111111
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .-.+..+.++++.+. .++|||+.|||.|++|+.+++..|||+||+||.|+.-
T Consensus 260 ~~~~~~~l~~v~~l~~~~~-~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 260 APLKERSTEVLRELYKLTG-GKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 00 113567778887763 1599999999999999999999999999999999864
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=95.84 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhh---------cCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcC---CCCcHHHHH-HH-HHC
Q 022271 47 APDYLRDLIRKTRSL---------TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSW---GEYSEELVL-EA-HSA 109 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~---------~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~---G~~~~~~v~-~~-~~~ 109 (300)
+++.+.+.++.+++. +++|+.|++.+.... .+.++.+.+.|++.|+.+- +.+ .++.. .. .+.
T Consensus 237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~-~dl~~~~~~~~~ 315 (409)
T PLN02826 237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRP-DSVLGHPHADEA 315 (409)
T ss_pred ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCc-cchhcccccccC
Confidence 567777777777543 358999999876542 4557788899999987652 222 11111 01 123
Q ss_pred CCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 110 GVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 110 G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|+..... .-.+..+.++++.+.+ ++|||+.|||.|++|+.+++.+||+.||++|.|+.-
T Consensus 316 GGlSG~pl~~~sl~~v~~l~~~~~~-~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 316 GGLSGKPLFDLSTEVLREMYRLTRG-KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CCcCCccccHHHHHHHHHHHHHhCC-CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 4333221 1246788888887743 699999999999999999999999999999999984
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=83.14 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=108.5
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHH-----------HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLR-----------DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~-----------~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~ 89 (300)
-+++++=|.-.-+||..+++... .-|.+++ +.|+++|+..+.|+ +.++-. .+...++.+.+.|++
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~--~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPV-IGi~K~-~~~~Ea~~L~eaGvD 89 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALE--RVPADIRAAGGVARMADPKMIKEIMDAVSIPV-MAKVRI-GHFVEAQILEALGVD 89 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeec--cCchhhhhcCCeeecCCHHHHHHHHHhCCCCe-EEeeeh-hHHHHHHHHHHcCCC
Confidence 37888888888999999998642 1122222 46888888888897 444432 236678899999999
Q ss_pred EEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------c------------------------------
Q 022271 90 VLQVSW-GEYSEELVLEAHS-AGVKVVPQ--------------------D------------------------------ 117 (300)
Q Consensus 90 ~i~~~~-G~~~~~~v~~~~~-~G~~v~~~--------------------~------------------------------ 117 (300)
+|.-+- -+|.++++...|. .+..++.+ .
T Consensus 90 iIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~ 169 (283)
T cd04727 90 MIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSE 169 (283)
T ss_pred EEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCH
Confidence 996331 1244567777765 36666654 0
Q ss_pred -----------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHH
Q 022271 118 -----------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 183 (300)
Q Consensus 118 -----------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~ 183 (300)
..+.+|.++++.+ ++||| +.|||.+++++..++.+||++|.+||.++.+..-. ....|++++.
T Consensus 170 ~t~~~~~~~~~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred HHHHhhhcccCCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 0234566666665 79997 99999999999999999999999999998653211 2344555554
Q ss_pred c
Q 022271 184 E 184 (300)
Q Consensus 184 ~ 184 (300)
.
T Consensus 247 ~ 247 (283)
T cd04727 247 H 247 (283)
T ss_pred h
Confidence 4
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=95.46 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH---HCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAH---SAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~-----~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~---~~G~~v~ 114 (300)
.+++.+.+.++++|+.++ .|+.|++...... .+.++.+.+.|++.|+++.+.....-+.... ..|....
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG 268 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG 268 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc
Confidence 367889999999999876 8999999965442 4567778889999999885432111011100 1121111
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .-.+..+.++++.+.. ++|||+.|||.|++|+.+++.+|||+||+||.++.-
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~-~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~ 324 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGG-RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE 324 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 00 0134577777777632 599999999999999999999999999999999864
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=85.33 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHH-hhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH---HHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r-~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~---~~v~~~~~~G~~v~~~- 116 (300)
.+.+.+.+.++++| +..+.|+.+ |.+.....+..++.+.+.|++.+.+. +.|++ ++++.+++.|+..+..
T Consensus 71 ~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 71 VTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 35567778888888 445678642 22222334678889999999988885 55543 5566667778776642
Q ss_pred ------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.....++.++++.. ++||++.+||.+++++.+++.. ||||
T Consensus 150 ap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGv 225 (258)
T PRK13111 150 APTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGV 225 (258)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEE
Confidence 01234666677655 7999999999999999999986 9999
Q ss_pred EeccccccCccc
Q 022271 161 CLGTRFVASEES 172 (300)
Q Consensus 161 ~~GT~fl~t~Es 172 (300)
.+||+|+-..|.
T Consensus 226 iVGSaiv~~~~~ 237 (258)
T PRK13111 226 IVGSALVKIIEE 237 (258)
T ss_pred EEcHHHHHHHHh
Confidence 999999977653
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-07 Score=82.48 Aligned_cols=143 Identities=21% Similarity=0.284 Sum_probs=99.4
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHH-----------HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLR-----------DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~-----------~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~ 89 (300)
-+++++=|.-.-+||...+++.. .-|..++ +.|+++++..+.|+ +.+.-. .+...++.+.+.|++
T Consensus 16 dv~~~eqa~iae~aga~avm~le--~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPV-ig~~ki-gh~~Ea~~L~~~GvD 91 (287)
T TIGR00343 16 DVVNPEQAKIAEEAGAVAVMALE--RVPADIRASGGVARMSDPKMIKEIMDAVSIPV-MAKVRI-GHFVEAQILEALGVD 91 (287)
T ss_pred EeCCHHHHHHHHHcCceEEEeec--cCchhhHhcCCeeecCCHHHHHHHHHhCCCCE-EEEeec-cHHHHHHHHHHcCCC
Confidence 37889999888899999998642 2233332 35778888788887 333321 235677888899999
Q ss_pred EEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------c------------------------------
Q 022271 90 VLQVSW-GEYSEELVLEAHS-AGVKVVPQ--------------------D------------------------------ 117 (300)
Q Consensus 90 ~i~~~~-G~~~~~~v~~~~~-~G~~v~~~--------------------~------------------------------ 117 (300)
+|.-+- -+|.++.+...|. .+..++.+ .
T Consensus 92 iIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~ 171 (287)
T TIGR00343 92 YIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLE 171 (287)
T ss_pred EEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 996332 2244555555554 35555543 0
Q ss_pred ------------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 ------------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 ------------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
..+.+|.++++.. ++||+ +.|||.|++++..++.+|||||.+||.+.-+.
T Consensus 172 ~~~~~~~a~~~~~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 172 EEDLAAVAKELRVPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred hhHHhhhhcccCCCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 1234566666654 79998 99999999999999999999999999998653
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-07 Score=79.58 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=93.9
Q ss_pred CcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCc--
Q 022271 23 SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYS-- 99 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~-- 99 (300)
...++|.+..++|.-++-..-.........+.++.+|+..+.|+-+.-+. .+.+.++.+.+.|++.|.+.. ..++
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i--~~~~~v~~~~~~Gad~v~l~~~~~~~~~ 109 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFI--IDPYQIYEARAAGADAVLLIVAALDDEQ 109 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCee--cCHHHHHHHHHcCCCEEEEeeccCCHHH
Confidence 34589999999887554321000011112246777777778888654222 234689999999999997642 2222
Q ss_pred -HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 100 -EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 100 -~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
+++++..+..|+.++.. ...+.++.++++.+. .++||++.|||.+++++.
T Consensus 110 ~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~ 188 (217)
T cd00331 110 LKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVK 188 (217)
T ss_pred HHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHH
Confidence 34444456677765432 011234566665531 268999999999999999
Q ss_pred HHHHCCCcEEEeccccccC
Q 022271 151 AALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t 169 (300)
+++.+|||||++||+++-.
T Consensus 189 ~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 189 RLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHHHcCCCEEEECHHHcCC
Confidence 9999999999999999854
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=77.21 Aligned_cols=147 Identities=27% Similarity=0.328 Sum_probs=94.0
Q ss_pred ecCCCCCCC--CcHHHHHHHHhCCceEEecCCCC-CCHH---HHH-HHHHHHHhhcCCcEEeeeecCCCcHHH---HHHH
Q 022271 14 VQAPLGPDI--SGPELVAAVANAGGLGLLRAPDW-EAPD---YLR-DLIRKTRSLTERPFGVGVVLAFPHNEN---IKAI 83 (300)
Q Consensus 14 i~apM~~g~--s~~~la~avs~aGglG~i~~~~~-~~~~---~l~-~~i~~~r~~~~~P~gvnl~~~~~~~~~---~~~~ 83 (300)
.+++|..+. ...+++..+.+.| .+.+..... .++. ... +.+..++...+.|+.+++....+.... .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~G-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 2 ILALLAGGPSGDPVELAKAAAEAG-ADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeeccccCchHHHHHHHHHHHcCC-CCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 467887332 3457777766654 444433210 0111 010 235556666688999999876554322 3688
Q ss_pred HHcCCcEEEEcCCCC-----cHHHHHHHHHC--CCeEeecc---------------------------C-----h---hc
Q 022271 84 LSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVPQD---------------------------G-----L---IS 121 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~-----~~~~v~~~~~~--G~~v~~~~---------------------------~-----~---~~ 121 (300)
.+.+++.|.++...+ ..++++.+++. +..++... + . ..
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~ 160 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADL 160 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHH
Confidence 899999999987764 35677777765 66655430 0 0 01
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
.+..+... .++||+++|||.+++++.+++.+|||+|++||
T Consensus 161 ~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 22223222 37999999999999999999999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-08 Score=91.86 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=98.7
Q ss_pred ccceecCCCCCCCCcH---HHHHHHHhCCceEE----ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 10 EYGIVQAPLGPDISGP---ELVAAVANAGGLGL----LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~---~la~avs~aGglG~----i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+.|+|..-+ |.+.. +++..+..+|.... ++|+|. .+++.+.+.++++|+.+++|+.|+|.+...
T Consensus 92 ~~pvI~Si~--G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~ 169 (310)
T PRK02506 92 NKPHFLSVV--GLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFD 169 (310)
T ss_pred CCCEEEEEE--eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCC
Confidence 368886544 46644 55555556663333 244321 268899999999999999999999998764
Q ss_pred cHHHHHHH---HHcCCcEEEEcC----CCCc-----HHHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 76 HNENIKAI---LSEKVAVLQVSW----GEYS-----EELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 76 ~~~~~~~~---~e~g~~~i~~~~----G~~~-----~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
..+..+.+ .+.+++.|...- |... ......-...|...... .-.+..+.++++.+.. ++|||+.|
T Consensus 170 ~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~-~ipIig~G 248 (310)
T PRK02506 170 IVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNP-SIQIIGTG 248 (310)
T ss_pred HHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCC-CCCEEEEC
Confidence 43333333 345666654421 1100 00010001112222111 1145677777777632 69999999
Q ss_pred CCCChHHHHHHHHCCCcEEEecccccc
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
||.+++|+.+++.+||+.||++|.++.
T Consensus 249 GI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 249 GVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 999999999999999999999999997
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=81.29 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~-~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.++..+.++++|+. .+.|+.+ |.+.+...+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEe
Confidence 4667788889999865 6678865 44444444667778888888877665 4443 23444555666665532
Q ss_pred ----------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ----------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ----------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.| +-.++..+++.. ++||+..-||+++++++++... ||||
T Consensus 155 aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGV 230 (265)
T COG0159 155 APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGV 230 (265)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence 01 234555555554 8999999999999999999999 9999
Q ss_pred EeccccccCcccCCC
Q 022271 161 CLGTRFVASEESYAH 175 (300)
Q Consensus 161 ~~GT~fl~t~Es~~~ 175 (300)
.+||+|+-.-|....
T Consensus 231 IVGSAiV~~i~~~~~ 245 (265)
T COG0159 231 IVGSAIVKIIEEGLD 245 (265)
T ss_pred EEcHHHHHHHHhccc
Confidence 999999988776543
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-07 Score=89.17 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=104.1
Q ss_pred cHHHHHHHHhCCceEEecCCC---CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC----
Q 022271 24 GPELVAAVANAGGLGLLRAPD---WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---- 95 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~---~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~---- 95 (300)
+++.+..--..=|.|.++... ..+++.|.+.|..+|+++ .++++|+|....+.....--+.++++|+|.++.
T Consensus 260 ~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GG 339 (485)
T COG0069 260 TPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGG 339 (485)
T ss_pred CHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCc
Confidence 345555444455677775432 358899999999999985 477999998766554444448889999999974
Q ss_pred -CCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhC----CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 96 -GEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 96 -G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~----~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|..|...++ .+| .+++..++++.+.+. ...+-|+++||+.|++|++.+++||||.|-+||..+.+.
T Consensus 340 TGAsP~~~~~---~~G------iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~ 410 (485)
T COG0069 340 TGASPLTSID---HAG------IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVAL 410 (485)
T ss_pred CCCCcHhHhh---cCC------chHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHh
Confidence 223444443 456 456667777777652 136899999999999999999999999999999999987
Q ss_pred ccC
Q 022271 171 ESY 173 (300)
Q Consensus 171 Es~ 173 (300)
-|.
T Consensus 411 GCi 413 (485)
T COG0069 411 GCI 413 (485)
T ss_pred hhH
Confidence 654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=78.53 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCceEEecC--CCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc-
Q 022271 25 PELVAAVANAGGLGLLRA--PDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~--~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~- 99 (300)
.++|.+..++|.-++... ..+ -+. +.|+.+|+.++.|+-.+=+.. +..+++.+.+.|+++|.+.....+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~----~~l~~v~~~v~iPvl~kdfi~--~~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSL----EYLRAARAAVSLPVLRKDFII--DPYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCH----HHHHHHHHhcCCCEEeeeecC--CHHHHHHHHHcCCCEEEEEeccCCH
Confidence 689999899887665321 111 122 567778887889986543332 344799999999999987643312
Q ss_pred ---HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 100 ---EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 100 ---~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.++++.+++.|..++.. ...+....++.+.+.+ ++|+|+.|||.++++
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed 225 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPED 225 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHH
Confidence 35666667778776543 0123344555554421 469999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCc
Q 022271 149 YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..++.+|||+|.+||.++.++
T Consensus 226 ~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 226 LKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred HHHHHHcCCCEEEECHHHcCCC
Confidence 9999999999999999999764
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=77.88 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=43.1
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++||+++|||.+.+|+.+++..|||||++||+|+..
T Consensus 177 ~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 177 NFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 356788888776 799999999999999999999999999999999865
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-07 Score=80.63 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecC-CC-----cHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLA-FP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~-~~-----~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
.+...+.++++|+.++.|+. ++.. .+ .+..++.+.+.|++.+.+. ..|+ .++++.++++|+..+..
T Consensus 61 ~~~~~~~~~~vr~~~~~pv~--lm~y~n~~~~~G~~~fi~~~~~aG~~giiip-Dl~~ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 61 LKDVLELVKEIRKKNTIPIV--LMGYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHHhhcCCCCEE--EEEecCHHHHhCHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 34566778888877777853 3333 11 3678899999999988874 2332 35666777788765532
Q ss_pred ---------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 ---------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 ---------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
. .....+.++++.. ++||++.|||.+.+++..+... ||+|+
T Consensus 138 P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~---~~pI~vggGI~~~e~~~~~~~~-ADgvV 213 (242)
T cd04724 138 PTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT---DLPIAVGFGISTPEQAAEVAKY-ADGVI 213 (242)
T ss_pred CCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC---CCcEEEEccCCCHHHHHHHHcc-CCEEE
Confidence 0 1224455555543 7999999999999999999999 99999
Q ss_pred eccccccCcccC
Q 022271 162 LGTRFVASEESY 173 (300)
Q Consensus 162 ~GT~fl~t~Es~ 173 (300)
+||+|+-..|..
T Consensus 214 vGSaiv~~~~~~ 225 (242)
T cd04724 214 VGSALVKIIEEG 225 (242)
T ss_pred ECHHHHHHHHhc
Confidence 999998776543
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.2e-08 Score=90.51 Aligned_cols=67 Identities=30% Similarity=0.427 Sum_probs=57.1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.+++..||++++++.. ++||++.|||++|.|+++||+|||++|.+|.+||..-.....+...+.|-.
T Consensus 257 ~st~~~L~ei~~av~~-~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~ 323 (360)
T COG1304 257 ISTADSLPEIVEAVGD-RIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEI 323 (360)
T ss_pred CChHHHHHHHHHHhCC-CeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHH
Confidence 6789999999999852 499999999999999999999999999999999998766665555554443
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.5e-08 Score=88.49 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=92.9
Q ss_pred ccceecCCCCCCCC---cH---HHHHHHHhCCc--eEE-ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecC
Q 022271 10 EYGIVQAPLGPDIS---GP---ELVAAVANAGG--LGL-LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLA 73 (300)
Q Consensus 10 ~~Pii~apM~~g~s---~~---~la~avs~aGg--lG~-i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~ 73 (300)
..|||..-++ .+ .. +++..+. +|. +=+ ++|++. .+++...+.++.+|+.++.|+.|+|.+.
T Consensus 96 ~~pvi~Si~~--~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~ 172 (295)
T PF01180_consen 96 DIPVIASING--DSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPN 172 (295)
T ss_dssp CEEEEEEE-T--SSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-ST
T ss_pred ceeEEEEeec--CCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 5688875543 45 33 4444443 343 222 355432 1345555666777888899999999987
Q ss_pred CCcH---HHHHHHHHcCCcEEEEcCCCCcHHHHH--HHH-----HCCCeEeec--cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 74 FPHN---ENIKAILSEKVAVLQVSWGEYSEELVL--EAH-----SAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 74 ~~~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~--~~~-----~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
.++. +.+..+.+.+++.|...-..+....++ ..+ ..|..-... .-.+..+.++++.++. ++|||+.|
T Consensus 173 ~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~-~i~Iig~G 251 (295)
T PF01180_consen 173 FTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ-DIPIIGVG 251 (295)
T ss_dssp SSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT-SSEEEEES
T ss_pred CCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc-ceEEEEeC
Confidence 6653 345555578999887421110000010 000 112222211 1246677888888732 59999999
Q ss_pred CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
||.|++|+.+++.+||+.||++|.++..
T Consensus 252 GI~s~~da~e~l~aGA~~Vqv~Sal~~~ 279 (295)
T PF01180_consen 252 GIHSGEDAIEFLMAGASAVQVCSALIYR 279 (295)
T ss_dssp S--SHHHHHHHHHHTESEEEESHHHHHH
T ss_pred CcCCHHHHHHHHHhCCCHheechhhhhc
Confidence 9999999999999999999999999764
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-07 Score=82.15 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHH-hhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r-~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.+++.+.++++| +..+.|+-+ |.+.....+..++.+.+.|++.+.+- ..|+ .++.+.+++.|+..+..
T Consensus 69 ~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip-DLP~ee~~~~~~~~~~~gl~~I~lv 147 (259)
T PF00290_consen 69 FTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP-DLPPEESEELREAAKKHGLDLIPLV 147 (259)
T ss_dssp --HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET-TSBGGGHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHcCCeEEEEE
Confidence 46677888899999 667778744 22222223556777777777777765 4443 34445556667665542
Q ss_pred ----------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ----------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ----------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
. .+..++..+++.. ++||++.-||++++++.+.. .|||||
T Consensus 148 ~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGv 223 (259)
T PF00290_consen 148 APTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGV 223 (259)
T ss_dssp ETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEE
T ss_pred CCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEE
Confidence 1 1234566666665 89999999999999999888 999999
Q ss_pred EeccccccCccc
Q 022271 161 CLGTRFVASEES 172 (300)
Q Consensus 161 ~~GT~fl~t~Es 172 (300)
.+||+|+-.-+.
T Consensus 224 IVGSa~v~~i~~ 235 (259)
T PF00290_consen 224 IVGSAFVKIIEE 235 (259)
T ss_dssp EESHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 999999987654
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=74.41 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
..+.+++.|..++-.-.. .....+++.+.|...+.. .....++..+++.. ++|||+.|||.+++|
T Consensus 115 aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~---~vpVI~egGI~tped 189 (248)
T cd04728 115 AAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA---DVPVIVDAGIGTPSD 189 (248)
T ss_pred HHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC---CCcEEEeCCCCCHHH
Confidence 344555558777733223 345677777888777643 12455677777664 799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHHc
Q 022271 149 YVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 184 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~~ 184 (300)
+..++.+|||||.+||+..-+..-. ....|+.++..
T Consensus 190 a~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 190 AAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999997433211 13445555443
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-06 Score=73.62 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC--C----Cc-H---HHHHHHHHcCCcEE-EEcCCCCcHHHHHHHHHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA--F----PH-N---ENIKAILSEKVAVL-QVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~--~----~~-~---~~~~~~~e~g~~~i-~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
.+.++--..-+-.|++++.++ |+|=.. . |+ . +..+.+++.|..++ ..+ . .....+++.+.|...+
T Consensus 73 ~ta~eAv~~a~lare~~~~~~-iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~-~--d~~~ak~l~~~G~~~v 148 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNW-IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT-D--DPVLAKRLEEAGCAAV 148 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCe-EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC-C--CHHHHHHHHHcCCCEe
Confidence 344444444444566655444 554321 1 11 2 33444455577777 333 2 3456777777887776
Q ss_pred ec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHH
Q 022271 115 PQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 183 (300)
Q Consensus 115 ~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~ 183 (300)
.. .....++..+++.. ++|||+.|||++++|+.+++.+|||||.+||+..-+..-. ....|++++.
T Consensus 149 mPlg~pIGsg~gi~~~~~i~~i~e~~---~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 149 MPLGAPIGSGLGLLNPYNLRIIIEQA---DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 43 11345566666654 7999999999999999999999999999999997532211 2345555554
Q ss_pred c
Q 022271 184 E 184 (300)
Q Consensus 184 ~ 184 (300)
.
T Consensus 226 a 226 (250)
T PRK00208 226 A 226 (250)
T ss_pred H
Confidence 3
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-06 Score=73.13 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=85.0
Q ss_pred HHHHHHHhCCceEEecCCC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+.+..+.++| +..+..-. -.+..++.+.+++++++.. +++++++.+ ++++.+.+.|++.|.+.....+...+.
T Consensus 25 ~~~~~~~~~g-v~~v~lr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~~~~~~ 98 (212)
T PRK00043 25 EVVEAALEGG-VTLVQLREKGLDTRERLELARALKELCR-RYGVPLIVN----DRVDLALAVGADGVHLGQDDLPVADAR 98 (212)
T ss_pred HHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 4444555666 44442210 1345556667777766543 467777763 467788888888887654332333333
Q ss_pred HHHHCCCeEe--------------------ec---cC-----------hhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 105 EAHSAGVKVV--------------------PQ---DG-----------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 105 ~~~~~G~~v~--------------------~~---~~-----------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
..++.+..+. .. .. .+..+.++++..+ ++||++.||| +.+.+.
T Consensus 99 ~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 99 ALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAP 175 (212)
T ss_pred HHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 3333333332 21 00 1456777777662 3999999999 789999
Q ss_pred HHHHCCCcEEEeccccccC
Q 022271 151 AALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t 169 (300)
+++.+||++|.+||.+..+
T Consensus 176 ~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 176 EVLEAGADGVAVVSAITGA 194 (212)
T ss_pred HHHHcCCCEEEEeHHhhcC
Confidence 9999999999999998765
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=76.51 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHhCCceEEecCC----------C---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 22 ISGPELVAAVANAGGLGLLRAP----------D---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~----------~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
+++++=+.-...+|...+.... + +.+|+ .|+++|+..+.|+-...-. .+...++.+.+.|+
T Consensus 24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~----~I~aIk~~V~iPVigk~Ri--gh~~Ea~~L~~~Gv 97 (293)
T PRK04180 24 VVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPK----MIEEIMDAVSIPVMAKARI--GHFVEAQILEALGV 97 (293)
T ss_pred eCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHH----HHHHHHHhCCCCeEEeehh--hHHHHHHHHHHcCC
Confidence 5666666555555553332110 0 23564 4557777788887432221 23566788889999
Q ss_pred cEEEEcC-CCCcHHHHHHHHH-CCCeEeec--------------------------------------------------
Q 022271 89 AVLQVSW-GEYSEELVLEAHS-AGVKVVPQ-------------------------------------------------- 116 (300)
Q Consensus 89 ~~i~~~~-G~~~~~~v~~~~~-~G~~v~~~-------------------------------------------------- 116 (300)
++|.-+- -+|.++.+...|. .+..++.+
T Consensus 98 DiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt 177 (293)
T PRK04180 98 DYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMS 177 (293)
T ss_pred CEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9996331 1233455555543 35555443
Q ss_pred -----------cChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -----------DGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -----------~~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
...+.+|.++++.. ++||+ +.|||.|++++..++.+||++|.+||.+..+.
T Consensus 178 ~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 178 EDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred HHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 01345677777765 79998 99999999999999999999999999998653
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=77.22 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCC------cHHHHHHHHHCCCeEeec------
Q 022271 53 DLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEY------SEELVLEAHSAGVKVVPQ------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~------~~~~v~~~~~~G~~v~~~------ 116 (300)
+.++++|+.++.|+.+ |.+ .....+.++.+.+.|++.+.++. .| ..++++.+++.|+..+..
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~-~~~~~~~i~~~~~~Gadgvii~d-lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDY-VDSLDNFLNMARDVGADGVLFPD-LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchh-hhCHHHHHHHHHHcCCCEEEECC-CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 5778888778889731 221 12235678899999999999872 22 246777788888887643
Q ss_pred ----------------------cC------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------------------DG------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------------------~~------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+ ....+.++++... +.||++.|||.+.+++..++..|||++++||.++-
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 1123344444432 47999999999999999999999999999999986
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 220 ~ 220 (244)
T PRK13125 220 E 220 (244)
T ss_pred H
Confidence 4
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=71.38 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++.+|+. ++.|+.+.+....+....++.+.+.|++++.++.-.+ ..++++.+++.|++++..
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 467777765 6788888877776666668899999999999875322 246788888889888741
Q ss_pred ----------c------Ch------hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------D------GL------ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------~------~~------~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. +. ...+.++++. .++||++.|||. .+.+.+++..|||+|.+||.+.-
T Consensus 122 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 122 LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 0 01 1122333322 279999999995 99999999999999999999753
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.42 E-value=9e-06 Score=69.57 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE---- 101 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~---- 101 (300)
+...+..++|.-.+.-.-.-.+.....+.++++++.+. +++++++.+. .++.+.+.|++.+.+........
T Consensus 16 ~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~----~~~~a~~~g~~~vh~~~~~~~~~~~~~ 90 (196)
T cd00564 16 EVVEAALKGGVTLVQLREKDLSARELLELARALRELCR-KYGVPLIIND----RVDLALAVGADGVHLGQDDLPVAEARA 90 (196)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEeC----hHHHHHHcCCCEEecCcccCCHHHHHH
Confidence 44555566664332111111356667777888887764 6888888743 46677788888775543222211
Q ss_pred ----------------HHHHHHHCCCeEeec--------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHH
Q 022271 102 ----------------LVLEAHSAGVKVVPQ--------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 102 ----------------~v~~~~~~G~~v~~~--------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~a 151 (300)
-+.+..+.|...+.. ...+..+.++++.. ++||++.|||. .+.+..
T Consensus 91 ~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~GGi~-~~~i~~ 166 (196)
T cd00564 91 LLGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIGGIT-PENAAE 166 (196)
T ss_pred HcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCCC-HHHHHH
Confidence 222333445554421 11235666666654 79999999995 789999
Q ss_pred HHHCCCcEEEeccccccC
Q 022271 152 ALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t 169 (300)
++.+||++|.+||.++..
T Consensus 167 ~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 167 VLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHcCCCEEEEehHhhcC
Confidence 999999999999998865
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=93.16 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-----CCCcHHHHHHHHHCCCeEeeccCh
Q 022271 46 EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-----GEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-----G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
.++|.|.+.|.++|+.+ ..|++|++.......+...-+.++++|+|.++. |.-|...+ +..| .+.
T Consensus 978 ySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~---~~~G------lP~ 1048 (1485)
T PRK11750 978 YSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSV---KYAG------SPW 1048 (1485)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHH---hhCC------ccH
Confidence 47888999999999886 569999998654333333356678999999874 22233333 3455 333
Q ss_pred hchHHHHHHhhC----CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 120 ISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 120 ~~ll~~v~~~~~----~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
..-|+++.+.+. ..++.|+++||+.|++|+++|++||||.|.+||.+|.+..|.
T Consensus 1049 e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi 1106 (1485)
T PRK11750 1049 ELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK 1106 (1485)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH
Confidence 444556655542 136999999999999999999999999999999999998884
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=69.70 Aligned_cols=140 Identities=26% Similarity=0.321 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCCCCCCHHHH-HHHHHHHHhhcCC-cEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAPDWEAPDYL-RDLIRKTRSLTER-PFGVGVVLAFPHNENIKAILSEKVAVLQVSWG 96 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~~~~~~~~l-~~~i~~~r~~~~~-P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G 96 (300)
|+++++-+..+.++| .+|++... .++..+ .++.+++++.... +..|.++.+....+..+.+.+.++++|-++..
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAP--KSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 678888887777777 47887542 355555 5566666665543 46778888777677788888999999999855
Q ss_pred CCcHHHHHHHHH-CCCeEee---c-------------------------c------C---hhchHHHHHHhhCCCCCcEE
Q 022271 97 EYSEELVLEAHS-AGVKVVP---Q-------------------------D------G---LISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 97 ~~~~~~v~~~~~-~G~~v~~---~-------------------------~------~---~~~ll~~v~~~~~~~~iPVi 138 (300)
. +.+.++.+++ .|..++. . . + .+.+++++. . ++|++
T Consensus 83 e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~---~~Pvi 156 (203)
T cd00405 83 E-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S---RKPVI 156 (203)
T ss_pred C-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c---CCCEE
Confidence 4 4456666664 2433331 1 0 0 122333332 2 68999
Q ss_pred EccCCCChHHHHHHHHCC-CcEEEeccccccC
Q 022271 139 AAGGIVDARGYVAALSLG-AQGICLGTRFVAS 169 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t 169 (300)
++||| |++.+.+++..| ++||-+.|.+...
T Consensus 157 laGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 157 LAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred EECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 99999 999999999999 9999999998755
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=76.44 Aligned_cols=123 Identities=23% Similarity=0.367 Sum_probs=95.2
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHS 108 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~ 108 (300)
+..|++|.+- +.+++-+.+.++++++.++.|+-+++-..... .+.++.+.+.|++.+.++ |+... .
T Consensus 113 a~~g~yGa~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH-GRtr~-------~ 181 (358)
T KOG2335|consen 113 AKRGGYGAFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH-GRTRE-------Q 181 (358)
T ss_pred HhcCCcccee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe-cccHH-------h
Confidence 3456666543 46899999999999999999999998776543 467888889999999999 66321 1
Q ss_pred CCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccC
Q 022271 109 AGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVAS 169 (300)
Q Consensus 109 ~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t 169 (300)
.|.+.. .-.+..+..|++.+. ++|||+.|+|.+.+|+-.++. -||||||.|...|..
T Consensus 182 kg~~~~--pad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N 239 (358)
T KOG2335|consen 182 KGLKTG--PADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN 239 (358)
T ss_pred cCCCCC--CcCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcC
Confidence 232221 346778888999883 499999999999999999999 899999999765543
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=73.83 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=79.1
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEe-cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecC---------------
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA--------------- 73 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i-~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~--------------- 73 (300)
+.|++.++ |+.+.+=+..+.++|.-+++ +...+.+|+.+.+..++..+. ..++.+++...
T Consensus 74 ~~pv~~~g---gi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~ 149 (232)
T TIGR03572 74 FMPLTVGG---GIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRR 149 (232)
T ss_pred CCCEEEEC---CCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcc
Confidence 45766533 56665555555566644443 322235666555555443211 01223322110
Q ss_pred ---CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 74 ---FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 74 ---~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
....+.++.+.+.|++.+.++ +..... ...| ..+.++.++++.+ ++||+++|||.+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~G~d~i~i~-~i~~~g-----~~~g-------~~~~~~~~i~~~~---~ipvia~GGi~s~~di~ 213 (232)
T TIGR03572 150 ATGRDPVEWAREAEQLGAGEILLN-SIDRDG-----TMKG-------YDLELIKTVSDAV---SIPVIALGGAGSLDDLV 213 (232)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEe-CCCccC-----CcCC-------CCHHHHHHHHhhC---CCCEEEECCCCCHHHHH
Confidence 011345556666666666555 221100 0111 2467888888876 79999999999999999
Q ss_pred H-HHHCCCcEEEecccc
Q 022271 151 A-ALSLGAQGICLGTRF 166 (300)
Q Consensus 151 a-al~lGAdgV~~GT~f 166 (300)
+ ....|||+|++||+|
T Consensus 214 ~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 214 EVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHcCCCEEEEehhh
Confidence 9 666999999999998
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.1e-06 Score=73.04 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=87.4
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+. ++.|+=|-|+...| +.+++...+.|++.|+++.-.. +..+++.+|+.|++....
T Consensus 48 ~i~~i~~~~~~~~~dvHLMv~~p-~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 48 ICKALRDYGITAPIDVHLMVKPV-DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred HHHHHHHhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 57778877 68999999998654 5688999999999999986421 457888899999887643
Q ss_pred ---------------------cChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---------------------DGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---------------------~~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++..++ .++||.+.|||. .+.+......|||++++||.+...
T Consensus 127 ~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 127 DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 0123345556555421 248999999998 889999999999999999997643
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-06 Score=74.44 Aligned_cols=48 Identities=33% Similarity=0.494 Sum_probs=44.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-HCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++ ..|++||.+|++|.+.
T Consensus 184 d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 184 DLELLKSFRNAL---KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 567888888886 89999999999999999999 7999999999999998
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=70.88 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=44.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||+++|||.+.+|+.+++..|||||++||.|+...
T Consensus 178 ~~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 178 NFELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 467888888876 7999999999999999999999999999999997764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.2e-06 Score=72.27 Aligned_cols=113 Identities=15% Similarity=0.262 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC---C-CcHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E-YSEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G---~-~~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|++++.|+.+-|+...| .+.++.+.+.|++.|+++.| . .+...++.+++.|..+...
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p-~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~ 133 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNP-EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEP 133 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCH-HHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 57888888899999999998754 45788889999999988887 2 1345566666666554322
Q ss_pred ---c----------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---D----------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---~----------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. ..+..+.++++.. .++||.+.||| +.+.+......|||++.+||.+...
T Consensus 134 ~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 134 VVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred HHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 0 0122334444432 25899999999 7899999999999999999997653
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=72.51 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=43.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++.+.+ ++||+++|||.+.+++.+++.. |||+|++|++|..-.
T Consensus 181 ~~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 181 DLELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 467788888776 8999999999999999999997 999999999998753
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=71.67 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=44.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.|.+|+.+++..| |+||++|++|+...
T Consensus 178 d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 178 NVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence 467888888876 79999999999999999999998 99999999997653
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=69.67 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC---------------
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------- 74 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------- 74 (300)
|=....|=- ....+...+++++|.=.++-.|.. .+.+.+.+.++++|+ ++.|+-. +..+.
T Consensus 10 h~~liDP~k--~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~~lPvil-fp~~~~~i~~~aDa~l~~sv 85 (232)
T PRK04169 10 HVTLLDPDK--PLPDEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-YDLPVIL-FPGNIEGISPGADAYLFPSV 85 (232)
T ss_pred EEEEECCCC--CCCHHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-CCCCEEE-eCCCccccCcCCCEEEEEEE
Confidence 334455654 333344478889887666644322 567889999999998 8888744 21110
Q ss_pred -----Cc------HHHHHHHHHcCCcEE-----EEcCC-----------CC--cHHHHHHH----HHCCCeEeec-----
Q 022271 75 -----PH------NENIKAILSEKVAVL-----QVSWG-----------EY--SEELVLEA----HSAGVKVVPQ----- 116 (300)
Q Consensus 75 -----~~------~~~~~~~~e~g~~~i-----~~~~G-----------~~--~~~~v~~~----~~~G~~v~~~----- 116 (300)
++ .+.+..+...+..++ .+.-| +| .++++... +-.|..++..
T Consensus 86 lNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~ 165 (232)
T PRK04169 86 LNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGG 165 (232)
T ss_pred ecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 00 122233322233222 11111 11 12333222 1235444433
Q ss_pred ---cChhchHHHHHHhhCCCCC-cEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 ---DGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 ---~~~~~ll~~v~~~~~~~~i-PViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.....++.++++.+ +. ||+..|||++.+++.+++..|||+|++||.|.-..+
T Consensus 166 ~g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 166 AGDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 11367888888876 67 999999999999999999999999999999985543
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=69.68 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++++|+.++.|+.+.++...+ .+.++.+.+.|++.|.++.+.. +.+.++.+++.|+.++..
T Consensus 47 ~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (211)
T cd00429 47 PVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYL 125 (211)
T ss_pred HHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH
Confidence 46777777666788888888754 4568888899999998875421 234455555666654322
Q ss_pred ------------cC---------hhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------DG---------LISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+ .+..+.++++... ..++||+++|||.. +.+..++..|||+|.+||.+...
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCC
Confidence 01 1123444444431 01389999999996 99999999999999999999854
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-05 Score=65.76 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=89.9
Q ss_pred HHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc---HHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH---NENIK 81 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~---~~~~~ 81 (300)
+++..++++|.=+++-.+.. .+.+.+.+.++.+|+.+++|+-+ +..+. ++ ..+.+
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil-fp~~~~~i~~~aD~~~~~sllns~~~~~i~g~~~~ 93 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL-FPGNVNGLSRYADAVFFMSLLNSADTYFIVGAQIL 93 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE-ECCCccccCcCCCEEEEEEeecCCCcchhhhHHHH
Confidence 46678889887666643322 58899999999999988999865 11110 10 22333
Q ss_pred HH---HHcCCcEEE-----EcCC--------------CCcH---HHHHHHHHCCCeEeec--------cChhchHHHHHH
Q 022271 82 AI---LSEKVAVLQ-----VSWG--------------EYSE---ELVLEAHSAGVKVVPQ--------DGLISLLPMVVD 128 (300)
Q Consensus 82 ~~---~e~g~~~i~-----~~~G--------------~~~~---~~v~~~~~~G~~v~~~--------~~~~~ll~~v~~ 128 (300)
.+ .+.+..++. ++-| .+++ .+...++..|.++++. .....++.++++
T Consensus 94 ~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~ 173 (205)
T TIGR01769 94 GAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK 173 (205)
T ss_pred HHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH
Confidence 33 555544332 2111 1222 2333445678888775 124567888888
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+ ++|++..|||+|.+++.+++..|||+|++|
T Consensus 174 ~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 174 AS---GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred hh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 77 799999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=72.56 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++.. ||++|++||+|....
T Consensus 185 d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~ 234 (253)
T PRK02083 185 DLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGE 234 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCC
Confidence 467888888876 7999999999999999999975 999999999998763
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-05 Score=66.45 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---H
Q 022271 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---E 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~ 100 (300)
+++.++ .+++-.+=.+ .+.++.. -+.|+.+|+. ++.++.+.+....+....++.+.+.|+++|++++-.++ .
T Consensus 16 ~~~~~l--~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~ 92 (206)
T TIGR03128 16 ELAEKV--ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIK 92 (206)
T ss_pred HHHHHc--ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHH
Confidence 566665 3567666432 0111221 3466677665 45567777655455455689999999999998865432 5
Q ss_pred HHHHHHHHCCCeEeec------------------------c-C---------hhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 101 ELVLEAHSAGVKVVPQ------------------------D-G---------LISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~------------------------~-~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
++++.+++.|+.++.. . + .+..+.++++.+. .+++.+.||| +.
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~ 169 (206)
T TIGR03128 93 GAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVK--EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CH
Confidence 7788888899888642 0 0 1112344444442 4667679999 88
Q ss_pred HHHHHHHHCCCcEEEeccccccC
Q 022271 147 RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.+..++..||+++.+||.+...
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcCC
Confidence 89999999999999999997654
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=71.76 Aligned_cols=49 Identities=29% Similarity=0.463 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH---CCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS---LGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~---lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++|||++|||.+.+|+.+++. .|||||++|++++...
T Consensus 178 d~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 178 NLELLREVCART---DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 577888888876 799999999999999999875 4999999999998764
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-05 Score=66.49 Aligned_cols=133 Identities=15% Similarity=0.229 Sum_probs=94.0
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc----CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT----ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE 101 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~----~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~ 101 (300)
+++.++.+ ||+.++-- .+.+|+.+ +.|+++++.. +..+|++-+. +.++++.+++.|++++..- +. .++
T Consensus 29 ~~~~al~~-~Gi~~iEi-t~~~~~a~-~~i~~l~~~~~~~p~~~vGaGTV~---~~~~~~~a~~aGA~FivsP-~~-~~~ 100 (213)
T PRK06552 29 KISLAVIK-GGIKAIEV-TYTNPFAS-EVIKELVELYKDDPEVLIGAGTVL---DAVTARLAILAGAQFIVSP-SF-NRE 100 (213)
T ss_pred HHHHHHHH-CCCCEEEE-ECCCccHH-HHHHHHHHHcCCCCCeEEeeeeCC---CHHHHHHHHHcCCCEEECC-CC-CHH
Confidence 55555444 66887744 24556544 5677776643 2347776664 5788999999999999865 33 467
Q ss_pred HHHHHHHCCCeEeec--------------------c--C--hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 102 LVLEAHSAGVKVVPQ--------------------D--G--LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~--------------------~--~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+++.+++.|+.+++. . . ....+..++..+ .++|+++.|||. .+.+..++..||
T Consensus 101 v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~--p~ip~~atGGI~-~~N~~~~l~aGa 177 (213)
T PRK06552 101 TAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPL--PQVNVMVTGGVN-LDNVKDWFAAGA 177 (213)
T ss_pred HHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhC--CCCEEEEECCCC-HHHHHHHHHCCC
Confidence 888888888888764 0 0 123455555444 259999999996 789999999999
Q ss_pred cEEEeccccccC
Q 022271 158 QGICLGTRFVAS 169 (300)
Q Consensus 158 dgV~~GT~fl~t 169 (300)
+++.+|+.+...
T Consensus 178 ~~vavgs~l~~~ 189 (213)
T PRK06552 178 DAVGIGGELNKL 189 (213)
T ss_pred cEEEEchHHhCc
Confidence 999999999654
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-05 Score=67.44 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC--C----Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA--F----PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~--~----~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
.+.++--..-+-.|++.+.++ |+|=.. . |+ .+..+.+++.|-.+.-.-. +..-+.+++.+.|+..+=
T Consensus 73 ~tA~EAv~~A~laRe~~~t~w-IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~--~D~v~akrL~d~GcaavM 149 (247)
T PF05690_consen 73 RTAEEAVRTARLAREAFGTNW-IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT--DDPVLAKRLEDAGCAAVM 149 (247)
T ss_dssp SSHHHHHHHHHHHHHTTS-SE-EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-SEBE
T ss_pred CCHHHHHHHHHHHHHHcCCCe-EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCC--CCHHHHHHHHHCCCCEEE
Confidence 455554444555577766554 555332 1 22 3456777788887776542 344567888899987652
Q ss_pred c----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHHc
Q 022271 116 Q----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 184 (300)
Q Consensus 116 ~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~~ 184 (300)
- ......+..+++.. ++|||..+||+++.|++.++.+|||+|.+-|+...+..-. -..++|.++..
T Consensus 150 PlgsPIGSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 150 PLGSPIGSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp EBSSSTTT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 2 12445778888887 8999999999999999999999999999999986654321 12446665554
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-05 Score=70.07 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEe-cCCCCCCHHHHHHHHHHHHhhcCC-cEEeee---------------ec
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTER-PFGVGV---------------VL 72 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i-~~~~~~~~~~l~~~i~~~r~~~~~-P~gvnl---------------~~ 72 (300)
+.||+.++ |+.+.+-+.....+|.-+++ +..-..+|+.+.+..++.-+ ++ -+.+++ -.
T Consensus 74 ~~pv~~~G---Gi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~--~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 74 FIPLTVGG---GIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGS--QCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCCEEEEC---CCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCC--CCEEEEEEeccCCCCCCccEEEEEeC
Confidence 45766532 67777666666667765544 32223466666555444410 11 112211 11
Q ss_pred CC-----CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 73 AF-----PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 73 ~~-----~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
+. ...+.++.+.+.|++.|.++ +... ..... -..+.++.++++.+ ++|||++|||.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iivt-~i~~-----~g~~~-------g~~~~~~~~i~~~~---~ipvia~GGi~s~~ 212 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILLT-SMDK-----DGTKS-------GYDLELTKAVSEAV---KIPVIASGGAGKPE 212 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEe-CcCc-----ccCCC-------CCCHHHHHHHHHhC---CCCEEEeCCCCCHH
Confidence 11 11345566667777776665 2211 00001 12467888888886 79999999999999
Q ss_pred HHHHHHHCC-CcEEEeccccccCc
Q 022271 148 GYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
++.+++..| +|||++||+|....
T Consensus 213 di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 213 HFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCCcceeeEhHHHhCCC
Confidence 999999998 99999999987653
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.6e-05 Score=67.07 Aligned_cols=49 Identities=29% Similarity=0.486 Sum_probs=44.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+.++.++++.+ ++||+++|||.+.+++.+++.+||++|++||+++....
T Consensus 182 ~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 182 TEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 56788888876 79999999999999999999999999999999988765
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=67.18 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=89.0
Q ss_pred HHHHHHHHhCC--ceEEe-cCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--
Q 022271 25 PELVAAVANAG--GLGLL-RAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (300)
Q Consensus 25 ~~la~avs~aG--glG~i-~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~-- 98 (300)
.+.+.++.++| .+++. ..+.+ .+...-.+.++++|+.++.|+-+.++...+ .+.++.+.+.|++.|.++.+.+
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~~~~~ 92 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPEASEH 92 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccCCchh
Confidence 35666677766 45553 11111 111223356777777666777677777643 5678888899999998885421
Q ss_pred cHHHHHHHHHCCCeEeec-----------------------------cC------hhchHHHHHHhhCC--CCCcEEEcc
Q 022271 99 SEELVLEAHSAGVKVVPQ-----------------------------DG------LISLLPMVVDLIGD--RDIPIIAAG 141 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-----------------------------~~------~~~ll~~v~~~~~~--~~iPViaaG 141 (300)
+...++.+++.|..++.. .+ .+..+.++++.++. .++|++++|
T Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G 172 (210)
T TIGR01163 93 IHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG 172 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 124445555666553321 00 11233444444321 137999999
Q ss_pred CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 142 GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
||. .+.+.+++..|||++.+||.+..+
T Consensus 173 GI~-~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 173 GVN-DDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred CcC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 995 699999999999999999999854
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=73.99 Aligned_cols=114 Identities=26% Similarity=0.348 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCC-----c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFP-----H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~-----~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
.+.+.++++|+.. +.|+++.+-.... . .+.++.+.+.|++.|.++.|........ . .. ... ....
T Consensus 193 ~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~-~-~~-~~~-~~~~ 268 (327)
T cd02803 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI-I-PP-PYV-PEGY 268 (327)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc-c-CC-CCC-Ccch
Confidence 4567788888876 5689998775421 1 3457788889999999987653211100 0 00 000 0012
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+.+++.+++.. |||.|++|+.|+..+
T Consensus 269 ~~~~~~~ir~~~---~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 269 FLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred hHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCc
Confidence 356677788877 7999999999999999999998 899999999999865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=65.18 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------cC--hhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
+..+.+++.|..+.-... +..-+.+++.+.|+..+=- .| .-..+..+++.. ++|||..+||+++.
T Consensus 128 ~Aae~Lv~eGF~VlPY~~--~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vpVivdAGIgt~s 202 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYIN--ADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENA---KIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHHHCCCEEeecCC--CCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcC---CCcEEEeCCcCCHH
Confidence 456777788877765542 3445678888999876521 12 344666677665 79999999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCc
Q 022271 148 GYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|++.++.+|||||.+.|+..-+.
T Consensus 203 Da~~AmElGaDgVL~nSaIakA~ 225 (267)
T CHL00162 203 EASQAMELGASGVLLNTAVAQAK 225 (267)
T ss_pred HHHHHHHcCCCEEeecceeecCC
Confidence 99999999999999999998543
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.9e-05 Score=66.47 Aligned_cols=48 Identities=27% Similarity=0.545 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++||+++|||++-.|+.++..+ |.+||.+|+++..-
T Consensus 179 n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 179 NVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred CHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence 456888898888 8999999999999999999999 99999999998754
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=62.47 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=87.7
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC-CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.++.++| +..+-.. ..++.. .+.++++++... ..+|...+. +.+.++.+++.|++++... +. ..++++
T Consensus 20 ~~~~~l~~~G-~~~vev~-~~~~~~-~~~i~~l~~~~~~~~iGag~v~---~~~~~~~a~~~Ga~~i~~p-~~-~~~~~~ 91 (190)
T cd00452 20 ALAEALIEGG-IRAIEIT-LRTPGA-LEAIRALRKEFPEALIGAGTVL---TPEQADAAIAAGAQFIVSP-GL-DPEVVK 91 (190)
T ss_pred HHHHHHHHCC-CCEEEEe-CCChhH-HHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEEcC-CC-CHHHHH
Confidence 5666656544 6666432 344543 347888877653 556766553 4678899999999988654 22 356666
Q ss_pred HHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 105 EAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
..++.|..++.. .+ ...++..++..+ .++|+++.||| +.+.+..++..|+++|
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~v 168 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVAV 168 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEEE
Confidence 666666665543 11 123344443333 25999999999 9999999999999999
Q ss_pred Eeccccc
Q 022271 161 CLGTRFV 167 (300)
Q Consensus 161 ~~GT~fl 167 (300)
.+|+.+.
T Consensus 169 ~v~s~i~ 175 (190)
T cd00452 169 GGGSLLP 175 (190)
T ss_pred EEchhcc
Confidence 9999887
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=63.37 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=89.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
+++.++.+ ||+.++--. +.+++.+ +.|+++++... ..+|++-+. ..++++.+++.|++++.... ...+++
T Consensus 26 ~~~~a~~~-gGi~~iEvt-~~~~~~~-~~i~~l~~~~~~~~~iGaGTV~---~~~~~~~a~~aGA~fivsp~--~~~~v~ 97 (206)
T PRK09140 26 AHVGALIE-AGFRAIEIP-LNSPDPF-DSIAALVKALGDRALIGAGTVL---SPEQVDRLADAGGRLIVTPN--TDPEVI 97 (206)
T ss_pred HHHHHHHH-CCCCEEEEe-CCCccHH-HHHHHHHHHcCCCcEEeEEecC---CHHHHHHHHHcCCCEEECCC--CCHHHH
Confidence 55555444 668877432 3455444 46777765443 356766654 57889999999999987742 234566
Q ss_pred HHHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 104 LEAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
+..+..|..++.. .+ -...+.++++.+. .++|+++.||| +.+.+..++..||++
T Consensus 98 ~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~ 175 (206)
T PRK09140 98 RRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAG 175 (206)
T ss_pred HHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeE
Confidence 6666666555432 11 1234555554441 14999999999 889999999999999
Q ss_pred EEeccccccC
Q 022271 160 ICLGTRFVAS 169 (300)
Q Consensus 160 V~~GT~fl~t 169 (300)
|.+||.+...
T Consensus 176 vav~s~l~~~ 185 (206)
T PRK09140 176 FGLGSALYRP 185 (206)
T ss_pred EEEehHhccc
Confidence 9999999763
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.6e-05 Score=65.78 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=50.0
Q ss_pred hhchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCC
Q 022271 119 LISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~ 186 (300)
.+.|+.++.+.- ++|| ++||||.|+.|.+-++.||||||.+||...-+. -++.+-++|+++.
T Consensus 194 p~elv~~~~~~g---rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~---~P~~~A~AIV~A~ 257 (296)
T COG0214 194 PYELVKEVAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS---NPEKRAKAIVEAT 257 (296)
T ss_pred hHHHHHHHHHhC---CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC---CHHHHHHHHHHHH
Confidence 356677766643 4555 799999999999999999999999999988764 5788888999863
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=62.98 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCceEEecC----CCC-----CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRA----PDW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~----~~~-----~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
.+-+.++.++| ...+.. ++| ..| ..++++|+.|+.|+-|-||...| ..+++...++|++.|+++.
T Consensus 19 ~~el~~~~~ag-ad~iH~DVMDghFVPNiTfGp----~~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad~It~H~ 92 (220)
T COG0036 19 GEELKALEAAG-ADLIHIDVMDGHFVPNITFGP----PVVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGADIITFHA 92 (220)
T ss_pred HHHHHHHHHcC-CCEEEEeccCCCcCCCcccCH----HHHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCCEEEEEe
Confidence 35566677777 444432 111 123 35777888899999999999765 6789999999999999986
Q ss_pred CC--CcHHHHHHHHHCCCeEeec----------------------------cC-------hhchHHHHHHhhCCC-CCcE
Q 022271 96 GE--YSEELVLEAHSAGVKVVPQ----------------------------DG-------LISLLPMVVDLIGDR-DIPI 137 (300)
Q Consensus 96 G~--~~~~~v~~~~~~G~~v~~~----------------------------~~-------~~~ll~~v~~~~~~~-~iPV 137 (300)
-. -....++.+|+.|++.... .+ .+.=+.++++...+. ++-+
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~I 172 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILI 172 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEE
Confidence 32 2468899999999887643 01 222333444443211 4568
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
-+.||| +.+.+..+.++|||-+++|| +++.... |++.+..
T Consensus 173 eVDGGI-~~~t~~~~~~AGad~~VaGS-alF~~~d-----~~~~i~~ 212 (220)
T COG0036 173 EVDGGI-NLETIKQLAAAGADVFVAGS-ALFGADD-----YKATIRE 212 (220)
T ss_pred EEeCCc-CHHHHHHHHHcCCCEEEEEE-EEeCCcc-----HHHHHHH
Confidence 899999 56688888899999999999 5554321 6666554
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00037 Score=62.30 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=51.4
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.++++++.+.|+. ++.+ +| .+.++.++.+.. ++||+++|||++.+|+.+++.+|+++|.+||+|.-
T Consensus 150 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 150 LFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 35666666665532 2222 22 367788888775 79999999999999999999999999999999863
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=65.98 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=72.4
Q ss_pred HHHHHhhcCCcEEeeeecCC-----CcHHHHHHHHHcCCcEEEEcCC---CCc---HHHHHHHHHCCCeEeec-------
Q 022271 55 IRKTRSLTERPFGVGVVLAF-----PHNENIKAILSEKVAVLQVSWG---EYS---EELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~-----~~~~~~~~~~e~g~~~i~~~~G---~~~---~~~v~~~~~~G~~v~~~------- 116 (300)
|..+++.++.|++..-+... ..+..++.+.+.|++.|.+... .+. .+.+..+++.|+.++..
T Consensus 48 l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~ 127 (223)
T PRK04302 48 IRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETS 127 (223)
T ss_pred HHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 44555545667765333221 1244578888888888876531 111 24555566677765532
Q ss_pred -------------cC-----h--------hchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -------------DG-----L--------ISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -------------~~-----~--------~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+ + -..+.++.+.++. .++||++.|||.+.+++..++..|||||.+||+++-
T Consensus 128 ~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 128 AAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 00 0 1112232222321 269999999999999999999999999999999996
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
+
T Consensus 208 ~ 208 (223)
T PRK04302 208 A 208 (223)
T ss_pred C
Confidence 5
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.5e-05 Score=73.45 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCC------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
-+.+.|+.+|+..+.|+++.+-... .. .+.++.+.+.|++.|.++.|.....-. . ... -...
T Consensus 194 f~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~-----~---~~~-~~~~ 264 (337)
T PRK13523 194 FLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARI-----D---VYP-GYQV 264 (337)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-----C---CCc-cccH
Confidence 4556788888877889998887532 11 245567777899999999875311000 0 000 0134
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.+..++++.+ ++||++.|+|.|++++.++|.-| ||.|.+|+.+++-++
T Consensus 265 ~~~~~ik~~~---~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 313 (337)
T PRK13523 265 PFAEHIREHA---NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPY 313 (337)
T ss_pred HHHHHHHhhc---CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCcc
Confidence 5667788776 79999999999999999999987 999999999998765
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00027 Score=62.41 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=87.6
Q ss_pred cHHHHHHHHhCCceEEecCCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc------
Q 022271 24 GPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH------ 76 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~------ 76 (300)
..+.+.++++.|.=.++-.|.. .+.+.+.+.++++|+.+ .|+-+ +..+. ++
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvil-fp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 93 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYG-LPIIL-FPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQ 93 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEE-eCCCccccCcCCCEEEEEEeecCCCchHHHhHH
Confidence 4578889999987676644322 57789999999999754 77754 11110 00
Q ss_pred HHHHHHHHHcCCcEE-----EEcCCC-----------C--cHHHHHHH----HHCCCeEeecc-----C---hhchHHHH
Q 022271 77 NENIKAILSEKVAVL-----QVSWGE-----------Y--SEELVLEA----HSAGVKVVPQD-----G---LISLLPMV 126 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i-----~~~~G~-----------~--~~~~v~~~----~~~G~~v~~~~-----~---~~~ll~~v 126 (300)
.+.+..+.+.+..++ .+.-|. | .++++... +--|.+++..+ + ...++.++
T Consensus 94 ~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v 173 (223)
T TIGR01768 94 IEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEV 173 (223)
T ss_pred HHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHH
Confidence 122333333333222 122111 0 12222211 11365655431 1 25677777
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++.+. ++||+..|||+|.+++..++.+|||+|++||.+.-.
T Consensus 174 ~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 174 KKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 77653 699999999999999999999999999999998754
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=71.50 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCC------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
..+.+.++.+|+.. +.|+++.+-... .. .+.++.+.+.+++.|.++.|....... ..+ ...
T Consensus 205 rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~-------~~~-~~~ 276 (336)
T cd02932 205 RFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-------IPV-GPG 276 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc-------cCC-Ccc
Confidence 45677888899876 678888876421 11 244566777899999988764321100 000 001
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
-...+..++++.+ ++||++.|||.+++++.+++..| ||.|++|+.+++-++
T Consensus 277 ~~~~~~~~ir~~~---~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~ 328 (336)
T cd02932 277 YQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPY 328 (336)
T ss_pred ccHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCcc
Confidence 1245667788877 79999999999999999999998 999999999998764
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00033 Score=60.47 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=79.6
Q ss_pred HHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH---
Q 022271 26 ELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--- 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~--- 100 (300)
+......++| ...+- .. ..+..++.+.+++++...+ ++++.++.+. ..+.+.+.+++.|.+..+..+.
T Consensus 17 ~~~~~~~~~g-~~~v~lR~~-~~~~~~~~~~~~~l~~~~~-~~~~~l~i~~----~~~la~~~g~~GvHl~~~~~~~~~~ 89 (196)
T TIGR00693 17 NRVEAALKGG-VTLVQLRDK-GSNTRERLALAEKLQELCR-RYGVPFIVND----RVDLALALGADGVHLGQDDLPASEA 89 (196)
T ss_pred HHHHHHHhcC-CCEEEEecC-CCCHHHHHHHHHHHHHHHH-HhCCeEEEEC----HHHHHHHcCCCEEecCcccCCHHHH
Confidence 4444555666 44432 21 1356666677777766532 2344444432 3556666666666554332111
Q ss_pred -----------------HHHHHHHHCCCeEeec---------c---C--hhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 101 -----------------ELVLEAHSAGVKVVPQ---------D---G--LISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 101 -----------------~~v~~~~~~G~~v~~~---------~---~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
+-+.+..+.|...+.. . + .+..+.++++... ++||++.||| +.+.+
T Consensus 90 r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~ 166 (196)
T TIGR00693 90 RALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENA 166 (196)
T ss_pred HHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHH
Confidence 1122344456665431 0 1 2456666665542 5999999999 68999
Q ss_pred HHHHHCCCcEEEeccccccC
Q 022271 150 VAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t 169 (300)
..++.+|++||.+|+.++.+
T Consensus 167 ~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 167 AEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHHHcCCCEEEEhHHhhCC
Confidence 99999999999999999865
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=68.42 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=52.6
Q ss_pred cHHHHHHHHHCCCeEeec----c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.++.+.+.+.|..++.+ + ..+.++.++.+.+ ++|||++|||++.+|+.+++.+||++|.+||+|..
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345666666666544433 2 2577889998886 79999999999999999999999999999999854
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00039 Score=62.05 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=52.1
Q ss_pred cHHHHHHHHHC-CCeEeec---c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSA-GVKVVPQ---D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~-G~~v~~~---~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.++++++.+. +-.++.+ . ..+.++.++.+.+ ++||+++|||++.+|+.+++.+|+++|.+||++...
T Consensus 148 ~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 148 PEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 45666666554 2222222 1 2456778888776 799999999999999999999999999999998765
Q ss_pred c
Q 022271 170 E 170 (300)
Q Consensus 170 ~ 170 (300)
.
T Consensus 225 ~ 225 (233)
T cd04723 225 G 225 (233)
T ss_pred C
Confidence 3
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=62.62 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCeEeec-------------
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~v~~~------------- 116 (300)
.+.++++++.++.|+.+.++...+ .++++.+.+.|++.|.++.+.+ +...++.+++.|..++..
T Consensus 50 ~~~~~~i~~~~~~~~~v~l~v~d~-~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~ 128 (220)
T PRK05581 50 PPVVEAIRKVTKLPLDVHLMVENP-DRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDV 128 (220)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHH
Confidence 456777777665788888888754 4466777899999998886532 124455556666664322
Q ss_pred -------------cC---------hhchHHHHHHhhCCC--CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -------------DG---------LISLLPMVVDLIGDR--DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -------------~~---------~~~ll~~v~~~~~~~--~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+ .+..+.++++..... +++|.++|||.. +.+..++..|+|+|.+||.++-.+
T Consensus 129 ~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~ 205 (220)
T PRK05581 129 LDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAP 205 (220)
T ss_pred HhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCC
Confidence 00 112333343333111 134678999988 799999999999999999998644
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=63.09 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-C--CcHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-E--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+.++.|+=|-|+...| ..+++.+.+.|++.|+++.- + .+..+++.+|+.|++....
T Consensus 50 ~i~~ir~~t~~~~DvHLMv~~P-~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 50 FVSQVKKLASKPLDVHLMVTDP-QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred HHHHHHhcCCCCeEEEEEecCH-HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 5777888889999999998765 55899999999999999875 2 2467889999999887643
Q ss_pred ------------cC---------hhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------DG---------LISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.| .+.-+.++++..++ .++-+-+.|||. .+-+..+..+|||.+++||..++.
T Consensus 129 ~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 129 HLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 01 22233334433322 246799999997 558889999999999999875654
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=61.60 Aligned_cols=46 Identities=28% Similarity=0.481 Sum_probs=40.0
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..+.++.+.+ ++||++.||| +.+++..++..||++|.+|+.|...
T Consensus 138 ~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 138 LEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 35666676665 7999999999 9999999999999999999999864
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00034 Score=61.98 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
.++.+|+. ++.|+=|-|+...| +.+++.+.+.|++.|+++.-. .+...++.+|+.|++....
T Consensus 52 ~i~~lr~~~~~~~~dvHLMv~~P-~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 52 VCQALRKHGITAPIDVHLMVEPV-DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred HHHHHHhhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHH
Confidence 67788888 68999999998754 568899999999999998742 1457888899999886543
Q ss_pred ------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+.-+.++++...+ .++.|-++|||. .+.+..+...|||.+++||.+..
T Consensus 131 ~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 131 PELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFN 204 (223)
T ss_pred hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence 0 122233344443321 247799999996 67888999999999999998553
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.3e-05 Score=69.04 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=53.3
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|+.-++. ...+.++.++++.+ ++||++.|||.+.+|+..++.+||++|++||.++.
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 445555555555443332 12466788888887 79999999999999999999999999999999997
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 109 ~p 110 (254)
T TIGR00735 109 NP 110 (254)
T ss_pred Ch
Confidence 64
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.9e-05 Score=69.50 Aligned_cols=105 Identities=22% Similarity=0.272 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCC-cEEeeeecCC---------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTER-PFGVGVVLAF---------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~-P~gvnl~~~~---------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.|+.+|+..+. |+++.+.... .. .+.++.+.+.+++.|.++.|...... .
T Consensus 204 f~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-------------~ 270 (338)
T cd02933 204 FLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-------------E 270 (338)
T ss_pred HHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-------------c
Confidence 466778888887543 8888876431 11 24566777789999999777532111 1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+..++++.+ ++||++.|||. ++++.+++..| ||.|.+|+.|++-++
T Consensus 271 ~~~~~~~~~ik~~~---~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~ 322 (338)
T cd02933 271 DQPPDFLDFLRKAF---KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPD 322 (338)
T ss_pred ccchHHHHHHHHHc---CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcC
Confidence 23457778888887 79999999997 99999999986 999999999998753
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=63.92 Aligned_cols=66 Identities=24% Similarity=0.451 Sum_probs=49.3
Q ss_pred cHHHHHHHHHCCCeEe-e-c---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVV-P-Q---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~-~-~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.++++++.+.|+.-+ . + +| .+.++.++++.+ ++|||++|||++.+|+.++...|++||.+|++|.
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 4566666666654422 1 1 22 467888898888 8999999999999999999999999999999984
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00049 Score=62.09 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=87.2
Q ss_pred cHHHHHHHHhCCceE--EecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc--
Q 022271 24 GPELVAAVANAGGLG--LLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS-- 99 (300)
Q Consensus 24 ~~~la~avs~aGglG--~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~-- 99 (300)
-.+++.+..++|.-+ ++....| ..--.+.++.+|+.++.|+--+=+. -++.++......|++.|.+-....+
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~--F~Gs~~dL~~v~~~~~~PvL~KDFI--id~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKF--FGGSLEDLRAVRKAVDLPVLRKDFI--IDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCC--CHHHHHHHHHHHHHSSS-EEEES-----SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC--CCCCHHHHHHHHHHhCCCcccccCC--CCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 357888877777533 3332222 1233356778888888887554222 2467788888899999876544333
Q ss_pred --HHHHHHHHHCCCeEeec------------------------cChhc----hHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 100 --EELVLEAHSAGVKVVPQ------------------------DGLIS----LLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 100 --~~~v~~~~~~G~~v~~~------------------------~~~~~----ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
.++++.++..|..++.- ..++. ...++...+. .++.+|+.+||.+.+|+
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCc-cceeEEeecCCCCHHHH
Confidence 24555566677766542 11222 2223333322 15889999999999999
Q ss_pred HHHHHCCCcEEEeccccccCcc
Q 022271 150 VAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+...|+|||.+|+.|+.++.
T Consensus 225 ~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 225 RRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp HHHCTTT-SEEEESHHHHTSSS
T ss_pred HHHHHCCCCEEEECHHHhCCCC
Confidence 9999999999999999998853
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=61.31 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++.+|+.|+.|+=|-|+...| +.+++.+.+.|++.|++++-. .+...++.+|+.|+++...
T Consensus 48 ~~i~~l~~~t~~~~DvHLMv~~P-~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l 126 (210)
T PRK08005 48 KTIQAVAQQTRHPLSFHLMVSSP-QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLA 126 (210)
T ss_pred HHHHHHHhcCCCCeEEEeccCCH-HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH
Confidence 36777888889999999998765 558999999999999998742 2457888899999887643
Q ss_pred ------------cC---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ------------DG---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ------------~~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.| .+.-+.++++... +..+-+.|||. .+-+..+...|||.+++||.+..
T Consensus 127 ~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~--~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 127 LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP--AAECWADGGIT-LRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc--cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhC
Confidence 00 1122233333322 34699999996 66788999999999999998653
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00069 Score=59.20 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=92.6
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.+..+ ||+.++-- .+.+++.+ +.|+++++.. +..+|.+-+. +.+.++.+++.|++++... +. .+++++
T Consensus 24 ~~~~al~~-~Gi~~iEi-t~~t~~a~-~~i~~l~~~~~~~~vGAGTVl---~~~~a~~a~~aGA~FivsP-~~-~~~v~~ 95 (204)
T TIGR01182 24 PLAKALIE-GGLRVLEV-TLRTPVAL-DAIRLLRKEVPDALIGAGTVL---NPEQLRQAVDAGAQFIVSP-GL-TPELAK 95 (204)
T ss_pred HHHHHHHH-cCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55655555 55777643 24565544 4677776543 4557777664 5788999999999999655 43 468888
Q ss_pred HHHHCCCeEeec--------------------cCh-----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 105 EAHSAGVKVVPQ--------------------DGL-----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~~-----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+++.|+.+++. .+. ..++..++.-+ .++|+++.|||.- ..+..+|..|+.+
T Consensus 96 ~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ptGGV~~-~N~~~~l~aGa~~ 172 (204)
T TIGR01182 96 HAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPF--PQVRFCPTGGINL-ANVRDYLAAPNVA 172 (204)
T ss_pred HHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccC--CCCcEEecCCCCH-HHHHHHHhCCCEE
Confidence 888888888764 111 22333333333 3799999999965 8999999999999
Q ss_pred EEecccccc
Q 022271 160 ICLGTRFVA 168 (300)
Q Consensus 160 V~~GT~fl~ 168 (300)
|.+||.+.-
T Consensus 173 vg~Gs~L~~ 181 (204)
T TIGR01182 173 CGGGSWLVP 181 (204)
T ss_pred EEEChhhcC
Confidence 999998774
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=62.93 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=52.7
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-----C-CcEEEe
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-----G-AQGICL 162 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-----G-AdgV~~ 162 (300)
+.++++++.+.|+. ++.+ +| .+.++.++++.. ++|||++|||++-+|+.++..+ | ++||.+
T Consensus 146 ~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 146 PVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 45667777766643 2222 22 567888888876 8999999999999999999997 6 999999
Q ss_pred ccccccC
Q 022271 163 GTRFVAS 169 (300)
Q Consensus 163 GT~fl~t 169 (300)
|++|.--
T Consensus 223 g~Al~~g 229 (241)
T PRK14114 223 GRAFLEG 229 (241)
T ss_pred ehHHHCC
Confidence 9998543
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=69.45 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCcE--EeeeecCCC-----c----HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 49 DYLRDLIRKTRSLTERPF--GVGVVLAFP-----H----NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~--gvnl~~~~~-----~----~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.-+.+.++.+|+..+.+| ++-+-.... . .+.++.+.+.| ++.|.++.|..... ....+...-.....
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~-~~~~~~~~~~~~~~ 270 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL-LGLAHVVPSMGMPP 270 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc-cccccccCCCCCCc
Confidence 456677888898876554 444443221 1 24567777887 89999987753211 00000000000000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....++.++++.+ ++||++.|+|.|.+++.+++..| ||+|.+|+.+++-++
T Consensus 271 ~~~~~~~~~ik~~~---~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 271 GPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred chhHHHHHHHHHHc---CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 11345667777777 79999999999999999999975 999999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00055 Score=60.38 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=49.0
Q ss_pred HHCCCeEeecc-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 107 HSAGVKVVPQD-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 107 ~~~G~~v~~~~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.-|.+++... ....++.++++.+. ++||+..|||+|.+++..++.+|||+|++||.+.-.
T Consensus 145 e~~g~~ivyLe~SG~~~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 145 EYLGMPIVYLEYSGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHcCCeEEEeCCCCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 44677766542 24566777777642 699999999999999999999999999999999875
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0005 Score=59.69 Aligned_cols=134 Identities=20% Similarity=0.326 Sum_probs=89.3
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.+. |+.++-- .+.+++.+ +.|+++++. .+.-+|++-+. +.++++.+++.|++++..- +. .++++
T Consensus 23 ~~~~~al~~g-Gi~~iEi-T~~t~~a~-~~I~~l~~~~p~~~vGAGTV~---~~e~a~~a~~aGA~FivSP-~~-~~~v~ 94 (196)
T PF01081_consen 23 VPIAEALIEG-GIRAIEI-TLRTPNAL-EAIEALRKEFPDLLVGAGTVL---TAEQAEAAIAAGAQFIVSP-GF-DPEVI 94 (196)
T ss_dssp HHHHHHHHHT-T--EEEE-ETTSTTHH-HHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEEES-S---HHHH
T ss_pred HHHHHHHHHC-CCCEEEE-ecCCccHH-HHHHHHHHHCCCCeeEEEecc---CHHHHHHHHHcCCCEEECC-CC-CHHHH
Confidence 4677776664 4777643 24566544 566666654 34557776664 5789999999999999876 33 57889
Q ss_pred HHHHHCCCeEeec-------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ-------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~-------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .|-..++..++.-+ .++|+++.|||.- ..+..+|.+|+.
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~--p~~~~~ptGGV~~-~N~~~~l~ag~~ 171 (196)
T PF01081_consen 95 EYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPF--PDLPFMPTGGVNP-DNLAEYLKAGAV 171 (196)
T ss_dssp HHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT--TT-EEEEBSS--T-TTHHHHHTSTTB
T ss_pred HHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC--CCCeEEEcCCCCH-HHHHHHHhCCCE
Confidence 9999999888864 11134555555444 3799999999975 689999999999
Q ss_pred EEEeccccccC
Q 022271 159 GICLGTRFVAS 169 (300)
Q Consensus 159 gV~~GT~fl~t 169 (300)
+|.+||.+.-.
T Consensus 172 ~vg~Gs~L~~~ 182 (196)
T PF01081_consen 172 AVGGGSWLFPK 182 (196)
T ss_dssp SEEEESGGGSH
T ss_pred EEEECchhcCH
Confidence 99999876543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=57.95 Aligned_cols=132 Identities=18% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHhCCceEEecCCCC--------CCHHH---HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE-----
Q 022271 30 AVANAGGLGLLRAPDW--------EAPDY---LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV----- 93 (300)
Q Consensus 30 avs~aGglG~i~~~~~--------~~~~~---l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~----- 93 (300)
+..++|.=|++-. |+ .+|+. +...+.++|...+.|+|||+.-+++ .+.+..+...+.++|=.
T Consensus 36 ~l~~~GvD~vive-N~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~-~aal~iA~a~ga~FIRv~~~~g 113 (257)
T TIGR00259 36 ALEEGGVDAVMFE-NFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDA-VAALAIAMAVGAKFIRVNVLTG 113 (257)
T ss_pred HHHhCCCCEEEEe-cCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCC-HHHHHHHHHhCCCEEEEccEee
Confidence 3445666666643 32 13443 4445667777788899999998654 45667777777777632
Q ss_pred ----cCCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchHHH
Q 022271 94 ----SWGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLLPM 125 (300)
Q Consensus 94 ----~~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll~~ 125 (300)
..|.. ..++++.-++ ..++++.+ ...+..+.+
T Consensus 114 ~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~ 193 (257)
T TIGR00259 114 VYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKL 193 (257)
T ss_pred eEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHH
Confidence 11110 1233332222 34444433 124566777
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++++.. +.||+.+||+ +++-+.+++.. |||+.+||.|=
T Consensus 194 vr~~~~--~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 194 AKETVK--DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHhccC--CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 776542 6899999999 67889999987 99999999986
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=61.07 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=60.3
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-ec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV-PQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~-~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
..+.+++.|-.+...-.. .....+++.+.|...+ +. ...-..+..+++.. ++||+.++||+++.|
T Consensus 189 aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~---~vpVivdAGIg~~sd 263 (326)
T PRK11840 189 ATEILVKEGFQVMVYCSD--DPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGA---TVPVLVDAGVGTASD 263 (326)
T ss_pred HHHHHHHCCCEEEEEeCC--CHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcC---CCcEEEeCCCCCHHH
Confidence 344455558777333223 3456677777777422 21 11345666666664 799999999999999
Q ss_pred HHHHHHCCCcEEEeccccccC
Q 022271 149 YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t 169 (300)
++.++.+|||||.+-|+..-+
T Consensus 264 a~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 264 AAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHHcCCCEEEEcceeccC
Confidence 999999999999999999743
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00065 Score=64.97 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=100.4
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCc--eEEecCCC-CCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHH
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGG--LGLLRAPD-WEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGg--lG~i~~~~-~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e 85 (300)
+.|.+|-.+- ..+..+-..-+.+.+. .+++=.|. ...... .+.++++|+. +++++-+.|...++....++.+.+
T Consensus 171 ~~p~L~vALD-~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G-~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~ 248 (391)
T PRK13307 171 DPPYLQVALD-LPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFG-LEVISKIREVRPDAFIVADLKTLDTGNLEARMAAD 248 (391)
T ss_pred ccceEEEecC-CCCHHHHHHHHHhcccccceEEEECHHHHHHhC-HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHh
Confidence 4577887776 2444433333344442 34432210 000000 1457777776 678999999998876655888999
Q ss_pred cCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec----c----------------------------ChhchHHHHHHhh
Q 022271 86 EKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ----D----------------------------GLISLLPMVVDLI 130 (300)
Q Consensus 86 ~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~----~----------------------------~~~~ll~~v~~~~ 130 (300)
.|++.+++++-.+ ....++.+++.|+.++.+ . +.+.-+.++++..
T Consensus 249 aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~ 328 (391)
T PRK13307 249 ATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAG 328 (391)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHHHHHHHHhC
Confidence 9999999985332 245677788889887762 0 0112233444331
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+++|.++|||. .+.+..++..|||.+.+||....+
T Consensus 329 --~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 329 --GKILVAVAGGVR-VENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred --CCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence 268999999998 888999999999999999986543
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.4e-05 Score=70.05 Aligned_cols=121 Identities=16% Similarity=0.306 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcC----C--cEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 50 YLRDLIRKTRSLTE----R--PFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 50 ~l~~~i~~~r~~~~----~--P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
-+.+.++.+|+..+ . |+++.+-.... . .+.++.+.+.|++.|.++.|..... .. ...
T Consensus 196 ~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~-~~---~~~---- 267 (353)
T cd04735 196 FPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK-SR---RGR---- 267 (353)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc-cc---cCC----
Confidence 36677888888654 3 45554443221 1 2456777788999999987653210 00 000
Q ss_pred eccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCC
Q 022271 115 PQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 115 ~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~ 187 (300)
......+.++++.++ .++|||+.|||.|++++.+++..|||+|.+|+.|++.+ .+-+++.+...
T Consensus 268 --~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadP------dl~~k~~~G~~ 331 (353)
T cd04735 268 --DDNQTIMELVKERIA-GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDP------DWVEKIKEGRE 331 (353)
T ss_pred --cchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCc------cHHHHHHcCCh
Confidence 112345555666653 26999999999999999999999999999999999874 35555555433
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=65.76 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=43.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++++.+ ++||++.|||.+.+++..++..||++|++||.++..
T Consensus 59 ~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 59 MLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred cHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 467788888876 799999999999999999999999999999998865
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00082 Score=65.34 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=83.0
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEA 106 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~ 106 (300)
.+....++|.-|+...+ ..+...+.+.++.+|+. +.++++.++......+.++.+.+.|++.|.++.|.. ..
T Consensus 73 ~v~~a~~aGAdgV~v~g-~~~~~~~~~~i~~a~~~-G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~-~~----- 144 (430)
T PRK07028 73 EVEMAAKAGADIVCILG-LADDSTIEDAVRAARKY-GVRLMADLINVPDPVKRAVELEELGVDYINVHVGID-QQ----- 144 (430)
T ss_pred HHHHHHHcCCCEEEEec-CCChHHHHHHHHHHHHc-CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccc-hh-----
Confidence 45555677877766322 22333455667777763 556666554433335567778888999997764431 10
Q ss_pred HHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 107 HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 107 ~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..+ ...+..+.++++.+ ++||++.||| +.+.+..++..||++|.+||.+...
T Consensus 145 -~~~------~~~~~~l~~l~~~~---~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 145 -MLG------KDPLELLKEVSEEV---SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred -hcC------CChHHHHHHHHhhC---CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 001 12346777777765 7999999999 6889999999999999999998764
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.001 Score=58.83 Aligned_cols=134 Identities=10% Similarity=0.149 Sum_probs=90.4
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh-----hcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-----LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE 100 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~-----~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~ 100 (300)
+++.++.+ ||+.++-- .+.+|+.+ +.|+++++ ..+..+|++-+. +.++++.+++.|++++..- +. .+
T Consensus 31 ~~~~al~~-gGi~~iEi-T~~tp~a~-~~i~~l~~~~~~~~p~~~vGaGTVl---~~e~a~~a~~aGA~FiVsP-~~-~~ 102 (222)
T PRK07114 31 KVIKACYD-GGARVFEF-TNRGDFAH-EVFAELVKYAAKELPGMILGVGSIV---DAATAALYIQLGANFIVTP-LF-NP 102 (222)
T ss_pred HHHHHHHH-CCCCEEEE-eCCCCcHH-HHHHHHHHHHHhhCCCeEEeeEeCc---CHHHHHHHHHcCCCEEECC-CC-CH
Confidence 55555555 66777743 24455433 33444432 123457777665 5788999999999999876 43 46
Q ss_pred HHHHHHHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCC-hHHHHHHHHC
Q 022271 101 ELVLEAHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSL 155 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~-g~~v~aal~l 155 (300)
++++.+++.|+.+++. .+ -..++..+..-+ .++|+++.|||.- ...+..+|..
T Consensus 103 ~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~--p~i~~~ptGGV~~~~~n~~~yl~a 180 (222)
T PRK07114 103 DIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM--PWTKIMPTGGVEPTEENLKKWFGA 180 (222)
T ss_pred HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccC--CCCeEEeCCCCCcchhcHHHHHhC
Confidence 8888888888888764 11 122333333222 3799999999985 5899999999
Q ss_pred CCcEEEeccccccC
Q 022271 156 GAQGICLGTRFVAS 169 (300)
Q Consensus 156 GAdgV~~GT~fl~t 169 (300)
|+.+|.+||-..-.
T Consensus 181 Ga~avg~Gs~L~~~ 194 (222)
T PRK07114 181 GVTCVGMGSKLIPK 194 (222)
T ss_pred CCEEEEEChhhcCc
Confidence 99999999987643
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=65.98 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=44.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+.+++.+++..||++|++||.++..+
T Consensus 62 ~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 62 MLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred hHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 467888888877 7999999999999999999999999999999998864
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00087 Score=58.33 Aligned_cols=127 Identities=22% Similarity=0.406 Sum_probs=83.3
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------CC-
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-------GE- 97 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-------G~- 97 (300)
..+.| +..||.-++--. .+|+ .++.+|+.++.|++|--+ +.+.+-.++++|++.|.+.- |.
T Consensus 31 ~i~~A-A~~ggAt~vDIA--adp~----LV~~~~~~s~lPICVSaV----ep~~f~~aV~AGAdliEIGNfDsFY~qGr~ 99 (242)
T PF04481_consen 31 AIVKA-AEIGGATFVDIA--ADPE----LVKLAKSLSNLPICVSAV----EPELFVAAVKAGADLIEIGNFDSFYAQGRR 99 (242)
T ss_pred HHHHH-HHccCCceEEec--CCHH----HHHHHHHhCCCCeEeecC----CHHHHHHHHHhCCCEEEecchHHHHhcCCe
Confidence 33443 444655554321 3564 677888899999998654 35566677778888876521 11
Q ss_pred --------------------------C----c---HHHHHHHHHCCCeEeeccC--------------------hhchHH
Q 022271 98 --------------------------Y----S---EELVLEAHSAGVKVVPQDG--------------------LISLLP 124 (300)
Q Consensus 98 --------------------------~----~---~~~v~~~~~~G~~v~~~~~--------------------~~~ll~ 124 (300)
| - -.+..++.+.|+.++.++| ++.-..
T Consensus 100 f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay 179 (242)
T PF04481_consen 100 FSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAY 179 (242)
T ss_pred ecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHH
Confidence 1 1 1344556678888887622 233334
Q ss_pred HHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 125 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 125 ~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++.+++ ++||+.+.||++- .+--+++.||+||-+|++.=
T Consensus 180 ~ISr~v---~iPVlcASGlS~v-T~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 180 AISRAV---SIPVLCASGLSAV-TAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred HHHhcc---CCceEeccCcchh-hHHHHHHcCCcccchhHHhh
Confidence 455555 8999999999765 56788999999999998753
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=55.85 Aligned_cols=134 Identities=21% Similarity=0.368 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCceEEecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------
Q 022271 25 PELVAAVANAGGLGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~------- 95 (300)
.+++.++.++| +.++--- .. +..++.+.+++.+..+ -.+.+.+. ..+.++.+++.|+++|....
T Consensus 27 ~~~~~~~~~~G-v~~vqlr-~k~~~~~e~~~~~~~~~~~~--~~g~gtvl---~~d~~~~A~~~gAdgv~~p~~~~~~~~ 99 (187)
T PRK07455 27 LQMAEAVAAGG-MRLIEIT-WNSDQPAELISQLREKLPEC--IIGTGTIL---TLEDLEEAIAAGAQFCFTPHVDPELIE 99 (187)
T ss_pred HHHHHHHHHCC-CCEEEEe-CCCCCHHHHHHHHHHhCCCc--EEeEEEEE---cHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 35666666544 6665321 12 3334444444433321 23444333 24788888888888875532
Q ss_pred -----------CCCcHHHHHHHHHCCCeEeeccCh-----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 96 -----------GEYSEELVLEAHSAGVKVVPQDGL-----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 96 -----------G~~~~~~v~~~~~~G~~v~~~~~~-----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
|+-...-+.+..+.|...+...++ ...+.+++..+. ++|+++.||| +.+.+..++..||++
T Consensus 100 ~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 100 AAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLG--HIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 111112222333445444432222 345566665542 5999999999 779999999999999
Q ss_pred EEecccccc
Q 022271 160 ICLGTRFVA 168 (300)
Q Consensus 160 V~~GT~fl~ 168 (300)
|.+||.++-
T Consensus 177 vav~s~i~~ 185 (187)
T PRK07455 177 VGLSGQLFP 185 (187)
T ss_pred EEEehhccc
Confidence 999998753
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=64.03 Aligned_cols=49 Identities=29% Similarity=0.465 Sum_probs=43.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.++++.+ ++||++.|||.+-+++..++.+||++|++||.++-.+
T Consensus 62 ~~~~i~~i~~~~---~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~ 110 (233)
T PRK00748 62 NLELIEAIVKAV---DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP 110 (233)
T ss_pred cHHHHHHHHHHC---CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence 456777777776 7999999999999999999999999999999998754
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=57.41 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=40.2
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+|+..=..++.+.+ .++|||++|||++.+|+.++..+|++||.+|++|...
T Consensus 167 dGt~~G~d~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 167 DGTLTGIEEIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred hhcccCHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 34443333555543 2799999999999999999999999999999998654
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0018 Score=56.38 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=90.1
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.+..+ ||+.++-- .+.+|+.+ +.|+++++.. +.-+|++-+. +.++++.+++.|++++..- +. .+++++
T Consensus 20 ~ia~al~~-gGi~~iEi-t~~tp~a~-~~I~~l~~~~~~~~vGAGTVl---~~e~a~~ai~aGA~FivSP-~~-~~~vi~ 91 (201)
T PRK06015 20 PLARALAA-GGLPAIEI-TLRTPAAL-DAIRAVAAEVEEAIVGAGTIL---NAKQFEDAAKAGSRFIVSP-GT-TQELLA 91 (201)
T ss_pred HHHHHHHH-CCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEeeEeCc---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55555445 56777643 24566544 4677776543 3457776664 5788999999999999776 33 468888
Q ss_pred HHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 105 EAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+++.|+.+++. .+ -..++..++.-+ .++|+++.|||.. +.+..+|.+|+..
T Consensus 92 ~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl--p~~~l~ptGGV~~-~n~~~~l~ag~~~ 168 (201)
T PRK06015 92 AANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCPTGGISL-KNARDYLSLPNVV 168 (201)
T ss_pred HHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhC--CCCcEEecCCCCH-HHHHHHHhCCCeE
Confidence 888888888764 11 123344444333 3799999999965 6999999999997
Q ss_pred EEeccccc
Q 022271 160 ICLGTRFV 167 (300)
Q Consensus 160 V~~GT~fl 167 (300)
+..||.+.
T Consensus 169 ~~ggs~l~ 176 (201)
T PRK06015 169 CVGGSWVA 176 (201)
T ss_pred EEEchhhC
Confidence 77766555
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=59.05 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+.+ +.|+=+.|++..| ...++.+.+.|++.|++++-.. +...++.+++.|..+...
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~p-~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSNP-EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCH-HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 4677788877 8899889986543 5577999999999999986432 346777788888776543
Q ss_pred -c--C----------------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -D--G----------------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -~--~----------------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. + .+.-+.++++... +..+.++|||.. +.+..+...|||.+++||....
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~--~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP--HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc--cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC
Confidence 0 0 1122233333321 477999999965 5888999999999999998553
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=67.33 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCC--------------------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAF--------------------PH---NENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~--------------------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.-+.+.|+++|+.. +-|+++.+-... .. .+.++.+.+.|++.|.++.|... ...
T Consensus 202 rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~-~~~ 280 (382)
T cd02931 202 RFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYD-AWY 280 (382)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCc-ccc
Confidence 34667788888876 347888776421 01 24567777889999999977531 100
Q ss_pred HHHHHCCCeEeeccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHH
Q 022271 104 LEAHSAGVKVVPQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 104 ~~~~~~G~~v~~~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
... - ......+ ...+..++++.+ ++||++.|||.+++++.+++..| ||.|.+|+.|++-++ +-++
T Consensus 281 ~~~---~-~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~------l~~k 347 (382)
T cd02931 281 WNH---P-PMYQKKGMYLPYCKALKEVV---DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPD------VVNK 347 (382)
T ss_pred ccc---C-CccCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCcc------HHHH
Confidence 000 0 0000011 234566777777 79999999999999999999976 999999999998753 4455
Q ss_pred HHcCC
Q 022271 182 LVEMD 186 (300)
Q Consensus 182 i~~a~ 186 (300)
+.+..
T Consensus 348 ~~~g~ 352 (382)
T cd02931 348 IRRGR 352 (382)
T ss_pred HHcCC
Confidence 55443
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00055 Score=59.76 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec--------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~-------------- 116 (300)
+.++++|+.++.|+=|-|+...| ..+++.+.+.|++.|+++.-. .+.++++.+++.|+++...
T Consensus 47 ~~i~~i~~~~~~~~DvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 47 DIIKAIRKITDLPLDVHLMVENP-ERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYL 125 (201)
T ss_dssp HHHHHHHTTSSSEEEEEEESSSG-GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG
T ss_pred HHHHHHhhcCCCcEEEEeeeccH-HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHh
Confidence 46778888899999999999876 458999999999999998632 2468899999999987643
Q ss_pred ------------c---------ChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 117 ------------D---------GLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 117 ------------~---------~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
. ..+.=+.++++... +.++.+.+.|||... .+..+..+|||.+++||...
T Consensus 126 ~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 126 DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 0 01222333333322 135899999999765 77889999999999998754
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0032 Score=56.79 Aligned_cols=148 Identities=22% Similarity=0.347 Sum_probs=91.1
Q ss_pred HHHhCCceEEecCCCC--------CCHHH---HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc----
Q 022271 30 AVANAGGLGLLRAPDW--------EAPDY---LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---- 94 (300)
Q Consensus 30 avs~aGglG~i~~~~~--------~~~~~---l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~---- 94 (300)
+..++|.=|++-. |+ .+|+. +...+.++|+..+.|+|||+..+.+ .+.+..+...|.++|=..
T Consensus 37 ~l~~~GvDgiive-N~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~-~aalaiA~A~ga~FIRv~~~~g 114 (254)
T PF03437_consen 37 ALEEGGVDGIIVE-NMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDP-KAALAIAAATGADFIRVNVFVG 114 (254)
T ss_pred HHHHCCCCEEEEe-cCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCC-HHHHHHHHHhCCCEEEecCEEc
Confidence 3456676677643 32 24444 3445666777778899999997654 455666667777776311
Q ss_pred -----CCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchHHH
Q 022271 95 -----WGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLLPM 125 (300)
Q Consensus 95 -----~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll~~ 125 (300)
.|.. ..++++.-++ +.++++.+ ...+..+.+
T Consensus 115 ~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~ 194 (254)
T PF03437_consen 115 AYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKR 194 (254)
T ss_pred eecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHH
Confidence 1110 1222222222 23444433 224567788
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC--cccCCCHHHHHHHHc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS--EESYAHPEYKRKLVE 184 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t--~Es~~~~~~k~~i~~ 184 (300)
+++.+ ++||+..+|+ |.+-+.+.|.. |||+.+||.|=-. -+.+.++.--+++++
T Consensus 195 vr~~~---~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 195 VREAV---PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred HHhcC---CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHH
Confidence 88877 6999999998 67788888876 9999999998743 234455554444443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00025 Score=66.81 Aligned_cols=118 Identities=18% Similarity=0.344 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecC------CCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLA------FPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~------~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
.-+.+.|+++|+.. +-|+++.+-.. ... .+.++.+.+.+++.|.++.|..... ....+ .........
T Consensus 200 rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~-~~~~~-~~~~~~~~~ 277 (338)
T cd04733 200 RLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESP-AMAGA-KKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCc-ccccc-ccCCccccc
Confidence 34567788888875 35788877531 111 3456777788999999987752111 00000 000000000
Q ss_pred C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+ ...+..++++.+ ++||++.|+|.+.+++.+++..| ||.|.||+.+++-++
T Consensus 278 ~~~~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 278 AYFLEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPD 330 (338)
T ss_pred hhhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCcc
Confidence 1 235566788877 89999999999999999999986 899999999998764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=55.91 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=94.6
Q ss_pred CCCcHHHHHHHHhCCc--eEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAGG--LGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++.+|. +|++... -+.++++.++.+..+.. .+ -|+++.+.+.++..+.+.+.++++|-++
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlH- 82 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VK-VVGVFVNESIEEILEIAEELGLDAVQLH- 82 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CC-EEEEECCCCHHHHHHHHHhcCCCEEEEC-
Confidence 5777777777777764 8888653 14567777766666654 12 4777888777888888888999999999
Q ss_pred CCCcHHHHHHHHHCC-CeEeecc-------------------------------C------hhchHHHHHHhhCCCCCcE
Q 022271 96 GEYSEELVLEAHSAG-VKVVPQD-------------------------------G------LISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 96 G~~~~~~v~~~~~~G-~~v~~~~-------------------------------~------~~~ll~~v~~~~~~~~iPV 137 (300)
|..+.+.++.+++.. +.++... + .+.+++.. .. ..|+
T Consensus 83 G~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~---~~~~ 157 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL---SKPV 157 (208)
T ss_pred CCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc---cCCE
Confidence 555788899998754 5555320 0 23344443 11 6789
Q ss_pred EEccCCCChHHHHHHHHCCC-cEEEeccc
Q 022271 138 IAAGGIVDARGYVAALSLGA-QGICLGTR 165 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGA-dgV~~GT~ 165 (300)
+.|||| +++.+..++.++. .||=+-|.
T Consensus 158 ~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 158 MLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred EEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 999999 7889999999887 77766543
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00085 Score=59.43 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++.. .|.-++++...+. ....+.+.+.|+++|-++.|-.+ .| .+.
T Consensus 104 ~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~---------~g-------at~ 166 (221)
T PRK00507 104 DWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST---------GG-------ATV 166 (221)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC-------CCH
Confidence 4678888999888854 4667888765443 34467778899999988776421 11 234
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..+..+++.+. .+++|.++|||.|.+++.+++.+||+-+-..
T Consensus 167 ~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 167 EDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 44444555543 2699999999999999999999999976543
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=63.98 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=55.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|.++++...+.|+..++. ...+.++.++.+.+ ++||.+.|||.|.+++..+|.+||+.|.+||..+..
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~---~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKL---DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 455666666666654443 22467888888887 799999999999999999999999999999999876
Q ss_pred cc
Q 022271 170 EE 171 (300)
Q Consensus 170 ~E 171 (300)
+|
T Consensus 111 p~ 112 (241)
T PRK14024 111 PE 112 (241)
T ss_pred HH
Confidence 44
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00064 Score=58.85 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=45.0
Q ss_pred hchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 120 ISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
++|+.+..+.- .+|| +++||+.++.|++-++.+|+|||.+|+...-+. -+.....+|+++
T Consensus 196 ~dLv~~t~q~G---rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~---dP~k~a~aiVqA 257 (296)
T KOG1606|consen 196 YDLVKQTKQLG---RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSG---DPVKRARAIVQA 257 (296)
T ss_pred HHHHHHHHHcC---CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCC---CHHHHHHHHHHH
Confidence 45666666543 5776 699999999999999999999999999887663 244444556664
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0023 Score=56.33 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------cC--hhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
.+..+.++++|-.+.-.... ..-+.+++.+.|+..+-- .| .-..+.-+++.. ++|||..-||+++
T Consensus 120 l~Aae~Lv~eGF~VlPY~~d--D~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviVDAGiG~p 194 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTD--DPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIVDAGIGTP 194 (262)
T ss_pred HHHHHHHHhCCCEEeeccCC--CHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhC---CCCEEEeCCCCCh
Confidence 34567788888777655432 345677888999886521 11 334566677766 8999999999999
Q ss_pred HHHHHHHHCCCcEEEeccccccCcc
Q 022271 147 RGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.|++.++.+|+|+|.+-|+...+..
T Consensus 195 SdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 195 SDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred hHHHHHHhcccceeehhhHhhccCC
Confidence 9999999999999999998876654
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=57.62 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=39.1
Q ss_pred hchHHHHHHhhCCCCCcEEEccCC--CChHH----HHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGI--VDARG----YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI--~~g~~----v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++.. ++||+++||| .|.++ +..++..||+||.+|+.++..+
T Consensus 168 ~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 168 AESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence 45566777665 7999999998 56666 7888999999999999999665
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00048 Score=61.97 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=64.2
Q ss_pred CCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..||.++.+..++.|...+|. .+...++.++++.+ ++||.+.|||++ +++..+|.+||+.|.+||..+..+.
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvVDLg~~n~~~i~~i~~~~---~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVIMLGPNNDDAAKEALHAY---PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcHHHHHHHHHhC---CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCC
Confidence 346688888888999887775 23566777787776 799999999998 9999999999999999999887532
Q ss_pred cCCCHHHHHHHHc
Q 022271 172 SYAHPEYKRKLVE 184 (300)
Q Consensus 172 s~~~~~~k~~i~~ 184 (300)
..++.+++....
T Consensus 113 -i~~~~~~~i~~~ 124 (253)
T TIGR02129 113 -FDLKRLKEIVSL 124 (253)
T ss_pred -CCHHHHHHHHHH
Confidence 223444444444
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=55.44 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC-C---
Q 022271 25 PELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-Y--- 98 (300)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~-~--- 98 (300)
.+.+.++.++|-+..+- .- ..+.+++.+..+++++++. .+++.++.++ .++.+.+.+++.|-+.... +
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K-~l~~~~~~~~a~~l~~l~~-~~gv~liINd----~~dlA~~~~adGVHLg~~d~~~~~ 102 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQY-GLDEATFQKQAEKLVPVIQ-EAGAAALIAG----DSRIAGRVKADGLHIEGNLAALAE 102 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCC-CCCHHHHHHHHHHHHHHHH-HhCCEEEEeC----HHHHHHHhCCCEEEECccccCHHH
Confidence 35555555655233331 11 2467788888888887653 2344455432 2444555555554332111 0
Q ss_pred -----------------cHHHHHHHHHCCCeEeec------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 99 -----------------SEELVLEAHSAGVKVVPQ------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 99 -----------------~~~~v~~~~~~G~~v~~~------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
..+-..+..+.|...+.. ...+.++..+++.+ ++||+|-||| +.+++
T Consensus 103 ~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~ 178 (221)
T PRK06512 103 AIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASA 178 (221)
T ss_pred HHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHH
Confidence 112122233445444321 01234566666665 7999999999 89999
Q ss_pred HHHHHCCCcEEEeccccccCc
Q 022271 150 VAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~ 170 (300)
..++..||+||.+-+.++..+
T Consensus 179 ~~~~~~GA~giAvisai~~~~ 199 (221)
T PRK06512 179 VEVAETGAEFVALERAVFDAH 199 (221)
T ss_pred HHHHHhCCCEEEEhHHhhCCC
Confidence 999999999999999998654
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0049 Score=54.98 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=48.9
Q ss_pred cHHHHHHHHHCCC-eEeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGV-KVVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~-~v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.++++++.+.|+ .++.+ +| .+.++.++.+. ..|+|++|||++-+|+.++..+|++||.+|+++.
T Consensus 148 ~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 148 VIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred HHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence 4577777777664 22222 22 45677777654 3569999999999999999999999999999975
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0044 Score=55.67 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=87.2
Q ss_pred cHHHHHHHHhCCc--eEEecCCCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc
Q 022271 24 GPELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (300)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~ 99 (300)
..++|....++|. +-++.-+.| -+. +.++++|+.++.|+-.+=+. .++.++......|++.|.+.....+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~----~~l~~v~~~v~~PvL~KDFI--id~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSL----EDLKSVSSELKIPVLRKDFI--LDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCH----HHHHHHHHhcCCCEEecccc--CCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 3467777777665 333322212 133 45677777777787443222 2466777777789999876543332
Q ss_pred ----HHHHHHHHHCCCeEeec------------------------cChh----chHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 100 ----EELVLEAHSAGVKVVPQ------------------------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 100 ----~~~v~~~~~~G~~v~~~------------------------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++++..+..|..++.- ..++ ....++...+. .++.+|+.+||.+++
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~ 215 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRS 215 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHH
Confidence 23455556666665532 1122 22233333332 267899999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCc
Q 022271 148 GYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
|+..+... +|||.+||.++.++
T Consensus 216 d~~~l~~~-~davLvG~~lm~~~ 237 (247)
T PRK13957 216 DLDKFRKL-VDAALIGTYFMEKK 237 (247)
T ss_pred HHHHHHHh-CCEEEECHHHhCCC
Confidence 99998876 99999999999874
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00056 Score=64.79 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcCC--cEEeeeecCC-----Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 48 PDYLRDLIRKTRSLTER--PFGVGVVLAF-----PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~--P~gvnl~~~~-----~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
...+.+.++++|+..+. |+++.+.... .. .+.++.+.+.+++.|.++.|..... +.. .... ...
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~-~~~---~~~~-~~~ 261 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEAR-VPT---IATS-VPR 261 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-Ccc---cccc-CCc
Confidence 34566778888887654 4555544321 11 2456777788999999976632100 000 0000 000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+..++++.+ ++||++.|+|.+.+++..++..| +|.|++|+.+++-++
T Consensus 262 ~~~~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~ 314 (353)
T cd02930 262 GAFAWATAKLKRAV---DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPD 314 (353)
T ss_pred hhhHHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCcc
Confidence 01234566788877 89999999999999999999976 999999999998754
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.006 Score=54.81 Aligned_cols=68 Identities=28% Similarity=0.167 Sum_probs=51.3
Q ss_pred cHHHHHHHHHCCCe-Eeec----cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH---HCCCcEEEeccc
Q 022271 99 SEELVLEAHSAGVK-VVPQ----DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL---SLGAQGICLGTR 165 (300)
Q Consensus 99 ~~~~v~~~~~~G~~-v~~~----~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal---~lGAdgV~~GT~ 165 (300)
+.++++++.+.|+. ++.+ +| .+.++.++++.. ++|||++|||++-+|+.+.- ..|++||.+|++
T Consensus 151 ~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~---~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~A 227 (243)
T TIGR01919 151 LEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART---DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKL 227 (243)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC---CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHH
Confidence 45677777777643 2222 22 467888888876 79999999999999999864 469999999999
Q ss_pred cccC
Q 022271 166 FVAS 169 (300)
Q Consensus 166 fl~t 169 (300)
|.--
T Consensus 228 l~~g 231 (243)
T TIGR01919 228 LYAR 231 (243)
T ss_pred HHcC
Confidence 8543
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00019 Score=65.61 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhh-cCC------cEEeeeecCCCc---HHHHHHHHHcCCcEEEEcC---CCCcHHHHHHHH-HCCCeEe
Q 022271 49 DYLRDLIRKTRSL-TER------PFGVGVVLAFPH---NENIKAILSEKVAVLQVSW---GEYSEELVLEAH-SAGVKVV 114 (300)
Q Consensus 49 ~~l~~~i~~~r~~-~~~------P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~---G~~~~~~v~~~~-~~G~~v~ 114 (300)
.+|++++.++... ..+ |+-+.+-+.... ++...++.+.+.+.++.+. ..|+.-.....+ +.|+.-.
T Consensus 231 ~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG 310 (398)
T KOG1436|consen 231 SDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSG 310 (398)
T ss_pred HHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCC
Confidence 4566666665332 122 444444332211 3455566677787776552 222222222222 2343333
Q ss_pred ec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 115 PQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 115 ~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.- .-....++++...++. +||||..|||.+|.|+.+-+.+||+.||++|+|..--= .+-+..|+.+.+
T Consensus 311 ~plk~~st~~vR~mY~lt~g-~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp-~i~~kIk~El~~ 380 (398)
T KOG1436|consen 311 PPLKPISTNTVRAMYTLTRG-KIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGP-AIIEKIKRELSA 380 (398)
T ss_pred CccchhHHHHHHHHHHhccC-CCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCc-hhHHHHHHHHHH
Confidence 21 1134567777777654 79999999999999999999999999999999976422 234556666554
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=61.37 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=48.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~ 186 (300)
.+.++.++.+.+ ++||++.|||.+.+++.+++..|||.|++||..+.. ++.+++......
T Consensus 61 ~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d-----p~~~~~i~~~~g 120 (234)
T cd04732 61 NLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN-----PELVKELLKEYG 120 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC-----hHHHHHHHHHcC
Confidence 456778888776 799999999999999999999999999999998854 344555555443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=61.44 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=51.4
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|+..++. ......+.++.+.. ++|+++.|||.|.+++..++.+|||+|.+||..+-
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 455666666666555443 12345666666655 79999999999999999999999999999998875
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 111 ~ 111 (241)
T PRK13585 111 N 111 (241)
T ss_pred C
Confidence 4
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0049 Score=54.22 Aligned_cols=136 Identities=22% Similarity=0.393 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.+ ||+..+--. +.+++.+ +.|+++|+. .+.-+|.+... +.+.++.+.+.|++++..- +. .++++
T Consensus 30 ~~i~~al~~-~Gi~~iEit-l~~~~~~-~~I~~l~~~~p~~~IGAGTVl---~~~~a~~a~~aGA~FivsP-~~-~~~vi 101 (212)
T PRK05718 30 VPLAKALVA-GGLPVLEVT-LRTPAAL-EAIRLIAKEVPEALIGAGTVL---NPEQLAQAIEAGAQFIVSP-GL-TPPLL 101 (212)
T ss_pred HHHHHHHHH-cCCCEEEEe-cCCccHH-HHHHHHHHHCCCCEEEEeecc---CHHHHHHHHHcCCCEEECC-CC-CHHHH
Confidence 356666555 557666432 4555443 566777654 34567777765 4578999999999998775 33 34777
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .+ -...+..++.-+ .++|+++.|||.- +.+..++..|+.
T Consensus 102 ~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~ptGGV~~-~ni~~~l~ag~v 178 (212)
T PRK05718 102 KAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPF--PDVRFCPTGGISP-ANYRDYLALPNV 178 (212)
T ss_pred HHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccC--CCCeEEEeCCCCH-HHHHHHHhCCCE
Confidence 7777777777743 11 122333333333 3699999999965 899999999954
Q ss_pred EEEeccccccCccc
Q 022271 159 GICLGTRFVASEES 172 (300)
Q Consensus 159 gV~~GT~fl~t~Es 172 (300)
+.+|..+|...+.
T Consensus 179 -~~vggs~L~~~~~ 191 (212)
T PRK05718 179 -LCIGGSWMVPKDA 191 (212)
T ss_pred -EEEEChHhCCcch
Confidence 4444555555443
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0005 Score=61.16 Aligned_cols=46 Identities=13% Similarity=0.336 Sum_probs=41.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.+.++.++.+.+ ++||+++|||++-+|+.+++.+||++|.+||..+
T Consensus 61 n~~~i~~i~~~~---~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 61 NLDVVKNIIRET---GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred hHHHHHHHHhhC---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 456777887765 7999999999999999999999999999999876
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=54.38 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecC---CCcHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec----c---
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLA---FPHNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ----D--- 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~---~~~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~--- 117 (300)
..+.+.++++++. +|..-||+=.- ..++.-++.+.+.. ++.|... -...++..++.|...+.. +
T Consensus 31 ~~l~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~a 105 (175)
T PF04309_consen 31 GNLKDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSA 105 (175)
T ss_dssp CCHHHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHH
Confidence 3466677777765 44454665332 24578889998876 9998875 246889999999888764 0
Q ss_pred ------------C-----hhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 118 ------------G-----LISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 118 ------------~-----~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+ +--++|.+.+.+++ .++||||+|=|.|.+++.++|..||++|-...+=|+
T Consensus 106 l~~~~~~i~~~~PD~vEilPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 106 LETGIKQIEQSKPDAVEILPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHHHHHHT-SEEEEESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHHHHHHhhcCCCEEEEchHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 0 11256777776543 479999999999999999999999999987765443
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0051 Score=55.40 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCCe---------Eeec-------
Q 022271 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVK---------VVPQ------- 116 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~~---------v~~~------- 116 (300)
++.+|+ +.|+=|-|+...| +.+++.+.+.|++.|+++.-.. +...+..+|+.|++ ....
T Consensus 69 i~~i~~--~~p~DvHLMV~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~ 145 (254)
T PRK14057 69 VGQLPQ--TFIKDVHLMVADQ-WTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL 145 (254)
T ss_pred HHHhcc--CCCeeEEeeeCCH-HHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH
Confidence 344444 4688888888654 5688999999999999986421 45778888988863 2211
Q ss_pred -------------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 117 -------------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 117 -------------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. ..+.-+.++++..++ .++-|-+.|||.. +-+..+..+|||.+++||.+
T Consensus 146 e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 146 DVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHh
Confidence 0 012223333333322 2477999999954 48889999999999999986
Q ss_pred cc
Q 022271 167 VA 168 (300)
Q Consensus 167 l~ 168 (300)
..
T Consensus 225 F~ 226 (254)
T PRK14057 225 FR 226 (254)
T ss_pred hC
Confidence 54
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0062 Score=57.84 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=95.0
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+||+. -. ...++.|..++|..-+++.....+.|++ .+. ..+.|+..+|.....
T Consensus 72 t~llG~~~~~Pv~iaP~g~-~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev----~~~--~~~~~~wfQlY~~~d 144 (367)
T TIGR02708 72 IEFLGHKLKSPFIMAPVAA-HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEI----SEA--LNGTPHWFQFYMSKD 144 (367)
T ss_pred eeeCCcccccccccCcHHH-hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHH----Hhh--cCCCceEEEEeccCC
Confidence 45677 578999999972 22 2578889999998877766433344433 222 135678888877543
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCCc-----HHHH-------------HHHHHCCCeEee-------ccChhchHHHHH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEYS-----EELV-------------LEAHSAGVKVVP-------QDGLISLLPMVV 127 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~~-----~~~v-------------~~~~~~G~~v~~-------~~~~~~ll~~v~ 127 (300)
..+.++.+.+.|.+.+.+....|. ++.- ..+......... ..-++..+.+++
T Consensus 145 r~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~ 224 (367)
T TIGR02708 145 DGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIA 224 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHH
Confidence 256788888999998877543320 0000 000000000000 011345677777
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.. ++||++= ||.+.+++..+...|+|+|+++
T Consensus 225 ~~~---~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 225 GYS---GLPVYVK-GPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred Hhc---CCCEEEe-CCCCHHHHHHHHHcCcCEEEEC
Confidence 766 7999976 7999999999999999999884
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0036 Score=55.16 Aligned_cols=144 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred CcHHHHHHHHhCCceEEecCCC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------------Cc-----
Q 022271 23 SGPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAF--------------------PH----- 76 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~--------------------~~----- 76 (300)
-..+.+.+++++|-=+++-.|. ..+.+.+++.++++|+.++.|+-+ +..+. ++
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvil-fP~~~~~is~~aDavff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVIL-FPGSPSGISPYADAVFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEE-ecCChhccCccCCeEEEEEEecCCCcccccch
Confidence 3458888999999877764332 246688999999999888887632 11100 00
Q ss_pred -HHHHHHHHHcCCcEE-----EEcCC-----------CC--cHHHHHHH----HHCCCeEeec-----cChhchHHHHHH
Q 022271 77 -NENIKAILSEKVAVL-----QVSWG-----------EY--SEELVLEA----HSAGVKVVPQ-----DGLISLLPMVVD 128 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i-----~~~~G-----------~~--~~~~v~~~----~~~G~~v~~~-----~~~~~ll~~v~~ 128 (300)
.+.+..+.+.+-.++ ++.-| +| .+++.... +--|.+++.. .+.-.....++.
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 111222222222221 11111 11 12222211 1246666543 122233334444
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++ ..|+|..|||.+++++.++..+|||.++.||.+--.
T Consensus 188 v~~--~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~ 226 (240)
T COG1646 188 VLS--DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEED 226 (240)
T ss_pred hhc--cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecC
Confidence 332 469999999999999999999999999999976433
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=61.96 Aligned_cols=116 Identities=14% Similarity=0.245 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCC---------Cc-H---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAF---------PH-N---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~---------~~-~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
-+.+.|+.+|+.. +.|+++.+-.+. .. + +.++.+.+.|++.|.++.|....+.. .|
T Consensus 196 f~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-----~~---- 266 (361)
T cd04747 196 FAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF-----EG---- 266 (361)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc-----Cc----
Confidence 4667788888875 468898876421 11 2 33555677899999888763110000 01
Q ss_pred eccChhchHHHHHHhhCCCCCcEEEccCC------------------CChHHHHHHHHCC-CcEEEeccccccCcccCCC
Q 022271 115 PQDGLISLLPMVVDLIGDRDIPIIAAGGI------------------VDARGYVAALSLG-AQGICLGTRFVASEESYAH 175 (300)
Q Consensus 115 ~~~~~~~ll~~v~~~~~~~~iPViaaGGI------------------~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~ 175 (300)
....+..++++.+ ++||++.|+| .|++++.+++.-| ||.|.+|+.+++-+
T Consensus 267 ---~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP----- 335 (361)
T cd04747 267 ---SELNLAGWTKKLT---GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDP----- 335 (361)
T ss_pred ---cchhHHHHHHHHc---CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCc-----
Confidence 1234556677776 7999999999 5999999999976 99999999999864
Q ss_pred HHHHHHHHcCC
Q 022271 176 PEYKRKLVEMD 186 (300)
Q Consensus 176 ~~~k~~i~~a~ 186 (300)
.+-+++.+..
T Consensus 336 -~~~~k~~~g~ 345 (361)
T cd04747 336 -AWVAKVREGR 345 (361)
T ss_pred -HHHHHHHcCC
Confidence 3555555543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0065 Score=62.23 Aligned_cols=149 Identities=14% Similarity=0.150 Sum_probs=91.8
Q ss_pred HHHHHHHHhCCc--eEEecCCCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc-
Q 022271 25 PELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (300)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~- 99 (300)
.+++....++|. +-++.-..| -+. +.++++|+.++.|+-.+=|. -++.++......|++.|.+-....+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~----~~l~~vr~~v~~PvLrKDFI--id~~QI~ea~~~GADavLLI~~~L~~ 146 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSL----DDFDKVRAAVHIPVLRKDFI--VTDYQIWEARAHGADLVLLIVAALDD 146 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCH----HHHHHHHHhCCCCEEecccc--CCHHHHHHHHHcCCCEeehhHhhcCH
Confidence 467777677665 333322211 133 45677777778887443222 2466777888888888876443322
Q ss_pred ---HHHHHHHHHCCCeEeec------------------------cChh----chHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 100 ---EELVLEAHSAGVKVVPQ------------------------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 100 ---~~~v~~~~~~G~~v~~~------------------------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.++++..++.|..++.- ..++ ....++...+. .++.+|+.+||.+++|
T Consensus 147 ~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d 225 (695)
T PRK13802 147 AQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVFGAVE 225 (695)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCCCHHH
Confidence 34455555666665532 0111 11222333332 2678999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 149 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+..+...|+|+|.+|+.++.++. .....++.+
T Consensus 226 ~~~l~~~G~davLIGeslm~~~d--p~~~~~~l~ 257 (695)
T PRK13802 226 VEDYARAGADAVLVGEGVATADD--HELAVERLV 257 (695)
T ss_pred HHHHHHCCCCEEEECHHhhCCCC--HHHHHHHHH
Confidence 99999999999999999999853 233444444
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0047 Score=55.52 Aligned_cols=140 Identities=17% Similarity=0.239 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCc--eEEecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--
Q 022271 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (300)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~-- 98 (300)
.+++.+..++|. +-++.-..|. ++ +.++.+|+..+.|+-.+=|.. ++.++......|++.|.+-....
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~----e~L~~v~~~v~~PvL~KDFii--D~yQI~~Ar~~GADavLLI~~~L~~ 142 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGSF----EDLRAVRAAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALDD 142 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCCH----HHHHHHHHhcCCCeeeccCCC--CHHHHHHHHHcCcccHHHHHHhcCH
Confidence 467777777664 3333322221 33 356778888888875543332 23444445555555442211000
Q ss_pred --cHHH--------------------HHHHHHCCCeEeec----cChh----chHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 99 --SEEL--------------------VLEAHSAGVKVVPQ----DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 99 --~~~~--------------------v~~~~~~G~~v~~~----~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.+++ +++..+.|.+++.. ..++ ....++...+. .++.+|.-+||.+++|
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~~d 221 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCC-CCcEEEecCCCCCHHH
Confidence 1222 33333455555543 1111 12222333332 2578999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcc
Q 022271 149 YVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+......||+|+.+||.++.++.
T Consensus 222 v~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 222 VRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred HHHHHHcCCCEEEecHHHhcCCC
Confidence 99999999999999999998853
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=59.29 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred cHHHHHHHHH-CCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHS-AGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~-~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
|.+..+.+.+ .|+.-+|. ...+.++.++.+.+ ++||.+.|||.+-+++.+++.+||+-|.+||..+
T Consensus 33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~---~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 33 AEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT---TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc---CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4556666666 56555443 12466788888766 7999999999999999999999999999999888
Q ss_pred cCc
Q 022271 168 ASE 170 (300)
Q Consensus 168 ~t~ 170 (300)
-.+
T Consensus 110 ~~~ 112 (234)
T PRK13587 110 QDT 112 (234)
T ss_pred cCH
Confidence 653
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0041 Score=59.07 Aligned_cols=110 Identities=27% Similarity=0.386 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCC------c----HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFP------H----NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~------~----~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
+.+.++.+|+..+ .|+++-|..... . .+.++.+.+.| ++.+.++.|.... .+.......
T Consensus 202 ~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~--------~~~~~~~~~ 273 (363)
T COG1902 202 LLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYER--------GGTITVSGP 273 (363)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccC--------CCCcccccc
Confidence 5567788888764 478887776433 1 34577777888 6999887654311 000000001
Q ss_pred C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+ ...+...++..+ .+|||++|+|.+++.+.++++-| ||.|-||+.|++-++
T Consensus 274 ~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~ 326 (363)
T COG1902 274 GYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPD 326 (363)
T ss_pred chhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCcc
Confidence 1 223333455555 69999999999999999999998 999999999998643
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00045 Score=61.25 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=81.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----------------
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---------------- 74 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~---------------- 74 (300)
|=....|=- ....+....++++|.=.++-.|. .+-..+++.++.+++.++.|+-. ++..
T Consensus 10 h~~liDPdK--~~~~~~~~~~~~~gtDai~VGGS-~~~~~~d~vv~~ik~~~~lPvil--fPg~~~~vs~~aDail~~sv 84 (230)
T PF01884_consen 10 HATLIDPDK--PNPEEALEAACESGTDAIIVGGS-DTGVTLDNVVALIKRVTDLPVIL--FPGSPSQVSPGADAILFPSV 84 (230)
T ss_dssp EEEEE-TTS--S-HHHHHHHHHCTT-SEEEEE-S-THCHHHHHHHHHHHHHSSS-EEE--ETSTCCG--TTSSEEEEEEE
T ss_pred eEEEECCCC--CCcHHHHHHHHhcCCCEEEECCC-CCccchHHHHHHHHhcCCCCEEE--eCCChhhcCcCCCEEEEEEE
Confidence 444456743 45566666678888766665432 22446667777788778888632 2211
Q ss_pred -----Cc---HH---HHHHHHHcCCcEEE-----EcCCC-----------C--cHHHHHHH----HHCCCeEeec---cC
Q 022271 75 -----PH---NE---NIKAILSEKVAVLQ-----VSWGE-----------Y--SEELVLEA----HSAGVKVVPQ---DG 118 (300)
Q Consensus 75 -----~~---~~---~~~~~~e~g~~~i~-----~~~G~-----------~--~~~~v~~~----~~~G~~v~~~---~~ 118 (300)
++ .. .+..+.+.+-.++. +.-|. | .++++... +-.|.+++.. -|
T Consensus 85 lNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSG 164 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSG 164 (230)
T ss_dssp TTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TT
T ss_pred ecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 10 12 22333333444442 22221 1 11222211 1245555543 12
Q ss_pred hhchH-HHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLL-PMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll-~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...-+ ++++++++. .++|+|..|||.|.+++.+++..|||.|++||.|--.
T Consensus 165 a~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 165 AYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp SSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred CCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 33334 333333211 3899999999999999999999999999999998544
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=55.84 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=52.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.+.|+..+++.+ ++||||+||-++.++..+++..| ||++...+-|=...= .-...|+.+.+.
T Consensus 187 Dl~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~--~i~evK~yL~~~ 249 (256)
T COG0107 187 DLELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEI--TIGEVKEYLAEQ 249 (256)
T ss_pred CHHHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcc--cHHHHHHHHHHc
Confidence 577999999998 89999999999999999999988 999999999877642 345677776653
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=61.05 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhcCC--cEEeeeecCC--------CcHH---HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTER--PFGVGVVLAF--------PHNE---NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~--P~gvnl~~~~--------~~~~---~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.++.+|+..+. |+++.+.... ..++ .++.+ +..++++.++.|.... ... -......
T Consensus 202 f~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l-~~~~D~i~vs~g~~~~-~~~-----~~~~~~~ 274 (370)
T cd02929 202 FWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEML-DELPDLWDVNVGDWAN-DGE-----DSRFYPE 274 (370)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHH-HhhCCEEEecCCCccc-ccc-----ccccCCc
Confidence 466778888887654 4555554321 1122 23333 3348999888775311 000 0000000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.-...+..++++.+ ++|||+.|||.+++++.+++..| ||.|.+|+.|++-+ .+-+++.+.
T Consensus 275 ~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP------~l~~k~~~g 335 (370)
T cd02929 275 GHQEPYIKFVKQVT---SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADP------FLPKKIREG 335 (370)
T ss_pred cccHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCc------hHHHHHHcC
Confidence 01245666777776 79999999999999999999987 99999999999874 355555543
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0049 Score=54.15 Aligned_cols=135 Identities=22% Similarity=0.353 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH--
Q 022271 25 PELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE-- 100 (300)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~-- 100 (300)
.+.+.+.-+.| +-.+- .-+ .+.++..+..++++++..+ +++-++.+ +.++.+++.+++.|-+.....+.
T Consensus 24 ~~~ve~al~~G-v~~vQlR~K~-~~~~~~~~~a~~~~~lc~~-~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ 96 (211)
T COG0352 24 LEWVEAALKGG-VTAVQLREKD-LSDEEYLALAEKLRALCQK-YGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAE 96 (211)
T ss_pred HHHHHHHHhCC-CeEEEEecCC-CChHHHHHHHHHHHHHHHH-hCCeEEec----CcHHHHHhCCCCEEEcCCcccchHH
Confidence 45555555545 44441 111 2344445556666665432 33444443 23566666666666554332122
Q ss_pred ------------------HHHHHHHHCCCeEeec-------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 101 ------------------ELVLEAHSAGVKVVPQ-------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 101 ------------------~~v~~~~~~G~~v~~~-------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
+-..+..+.|...+.. ...+..+..+++.. .+|++|-||| |.+.+
T Consensus 97 ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv 172 (211)
T COG0352 97 ARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENV 172 (211)
T ss_pred HHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHH
Confidence 2222333334333321 11345666777665 6999999999 77899
Q ss_pred HHHHHCCCcEEEeccccccCc
Q 022271 150 VAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~ 170 (300)
...+..||+||.+-|+++.+.
T Consensus 173 ~~v~~~Ga~gVAvvsai~~a~ 193 (211)
T COG0352 173 PEVLEAGADGVAVVSAITSAA 193 (211)
T ss_pred HHHHHhCCCeEEehhHhhcCC
Confidence 999999999999999998753
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0078 Score=56.82 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.7
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..+..+.+.. ++||+|-|||. .+.+..++..||+||.+++.++.+
T Consensus 283 le~l~~~~~~~---~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 283 LEYLKYAAKEA---PIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHHHHHHHHhC---CCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhCC
Confidence 45566666554 79999999995 889999999999999999999864
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=67.60 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCC--C----c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAF--P----H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~--~----~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
-+.+.++.+|+.. +.|+++.+-... + . .+.++.+.+.|++.|.++.|........ ..+ ..-
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~---~~~-----~~~ 674 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKP---VYG-----RMY 674 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCC---CcC-----ccc
Confidence 4556778888864 468998877532 1 1 2456777788999999987653110000 000 001
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
...+..++++.+ ++||++.|+|.+++++..++..| ||.|.+|+.|++-++
T Consensus 675 ~~~~~~~ik~~~---~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~ 725 (765)
T PRK08255 675 QTPFADRIRNEA---GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPA 725 (765)
T ss_pred cHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc
Confidence 123456677776 79999999999999999999965 999999999999865
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.005 Score=58.34 Aligned_cols=147 Identities=20% Similarity=0.176 Sum_probs=92.3
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. -. ...++.|..++|..=+++.....+.|++.+ ..+.|+..+|...+.
T Consensus 56 ttllG~~~~~P~~iaP~g~-~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~-------a~~~~~wfQLY~~~r 127 (361)
T cd04736 56 ASLFGKVWSAPLVIAPTGL-NGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVAR-------QADGDLWFQLYVVHR 127 (361)
T ss_pred eeECCccccccccccHHHH-HhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHh-------hcCCCeEEEEEecCH
Confidence 45677 567999999862 21 247788888888776676543345554432 235688899988542
Q ss_pred --cHHHHHHHHHcCCcEEEEcCCCC----------------cH----HHHHHH---------HHCCCeEeec--------
Q 022271 76 --HNENIKAILSEKVAVLQVSWGEY----------------SE----ELVLEA---------HSAGVKVVPQ-------- 116 (300)
Q Consensus 76 --~~~~~~~~~e~g~~~i~~~~G~~----------------~~----~~v~~~---------~~~G~~v~~~-------- 116 (300)
.++.++.+.+.|++.+.++...| ++ .+.+-+ ...|..-+..
T Consensus 128 ~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~ 207 (361)
T cd04736 128 ELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAID 207 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccc
Confidence 14567888889999987653221 10 001100 0001000000
Q ss_pred ------------c--ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 117 ------------D--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 117 ------------~--~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
. -++..+..+++.. +.|||..| |.+.+++..+..+|+|+|.+
T Consensus 208 ~~~~~~~~~~~~d~~~~w~~i~~ir~~~---~~pviiKg-V~~~eda~~a~~~G~d~I~V 263 (361)
T cd04736 208 VEVQAALMSRQMDASFNWQDLRWLRDLW---PHKLLVKG-IVTAEDAKRCIELGADGVIL 263 (361)
T ss_pred hhhHHHHHHhccCCcCCHHHHHHHHHhC---CCCEEEec-CCCHHHHHHHHHCCcCEEEE
Confidence 0 1334566677665 78999985 99999999999999999998
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.026 Score=48.14 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=72.0
Q ss_pred cHHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhc---CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC
Q 022271 24 GPELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLT---ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~---~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~ 98 (300)
..+.+.++.++| +..+- .. ..+.+++.+.+++++++. +.++-+|= ..+.+.+.+++.|-+.....
T Consensus 14 ~~~~l~~~~~~g-v~~v~lR~k-~~~~~~~~~~a~~l~~~~~~~~~~liin~--------~~~la~~~~~dGvHl~~~~~ 83 (180)
T PF02581_consen 14 FLEQLEAALAAG-VDLVQLREK-DLSDEELLELARRLAELCQKYGVPLIIND--------RVDLALELGADGVHLGQSDL 83 (180)
T ss_dssp HHHHHHHHHHTT--SEEEEE-S-SS-HHHHHHHHHHHHHHHHHTTGCEEEES---------HHHHHHCT-SEEEEBTTSS
T ss_pred HHHHHHHHHHCC-CcEEEEcCC-CCCccHHHHHHHHHHHHhhcceEEEEecC--------CHHHHHhcCCCEEEeccccc
Confidence 345555666666 55542 21 146777888888777653 34454442 34555556666665543221
Q ss_pred cHH--------------------HHHHHHHCCCeEeec-------------cChhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 99 SEE--------------------LVLEAHSAGVKVVPQ-------------DGLISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 99 ~~~--------------------~v~~~~~~G~~v~~~-------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
+.. -+.++.+.|...+.. .--+..+.++.+.. ++||+|-||| |
T Consensus 84 ~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~ 159 (180)
T PF02581_consen 84 PPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-T 159 (180)
T ss_dssp SHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---
T ss_pred chHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-C
Confidence 111 133334444443321 01245666777766 7999999999 7
Q ss_pred hHHHHHHHHCCCcEEEeccc
Q 022271 146 ARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~ 165 (300)
.+++..+..+||+||.+-++
T Consensus 160 ~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 160 PENIPELREAGADGVAVISA 179 (180)
T ss_dssp TTTHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEee
Confidence 88999999999999988653
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=58.31 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=52.8
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|..-++. ...+.++.++++.+ ++||+++|||.+-+++..++..|+++|++||..+.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 456666666666543321 12456778888776 79999999999999999999999999999998876
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 109 ~~ 110 (232)
T TIGR03572 109 NP 110 (232)
T ss_pred CH
Confidence 53
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0015 Score=57.82 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=58.6
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++...+.|+.-++. . ..+.++.++.+.+ ++|+...|||.+.+++..++.+||+.|++||..+-
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 455666666665543332 1 1356788888776 79999999999999999999999999999999885
Q ss_pred CcccCCCHHHHHHHHcCC
Q 022271 169 SEESYAHPEYKRKLVEMD 186 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~a~ 186 (300)
. ++.+++......
T Consensus 107 d-----~~~~~~~~~~~g 119 (230)
T TIGR00007 107 N-----PDLVKELLKEYG 119 (230)
T ss_pred C-----HHHHHHHHHHhC
Confidence 3 344666555543
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0075 Score=57.05 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=93.7
Q ss_pred ccccC--CccceecCCCCCCC-C----cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc
Q 022271 4 RGMLG--FEYGIVQAPLGPDI-S----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH 76 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~-s----~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~ 76 (300)
+++|| +..|++.+||+..- . ...++.+..++|..-+++.....+.|++.+ .. .+.|..+++..+...
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~----~~--~~~~~wfQlY~~~d~ 137 (351)
T cd04737 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAK----AS--NGGPKWFQLYMSKDD 137 (351)
T ss_pred eEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHH----hc--CCCCeEEEEeecCCH
Confidence 45677 57799999997311 1 247888888999777776643345554422 21 145788888876542
Q ss_pred ---HHHHHHHHHcCCcEEEEcCCCCc-----HHHHHHH---------HHC--CCeE----------eeccChhchHHHHH
Q 022271 77 ---NENIKAILSEKVAVLQVSWGEYS-----EELVLEA---------HSA--GVKV----------VPQDGLISLLPMVV 127 (300)
Q Consensus 77 ---~~~~~~~~e~g~~~i~~~~G~~~-----~~~v~~~---------~~~--G~~v----------~~~~~~~~ll~~v~ 127 (300)
++.++.+.+.|++.+.++...|. ++.-... ... +... +...-+...+..++
T Consensus 138 ~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 217 (351)
T cd04737 138 GFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIA 217 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHH
Confidence 56788888999998877654321 1100000 000 0000 00011345566777
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+.. ++||++= ||.+++++..+...|+|+|.+
T Consensus 218 ~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 218 KIS---GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred HHh---CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 766 7999977 589999999999999999999
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=58.84 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 98 YSEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.|.++++.+.+.|+.-++. ...+.++.++.+.. ++||++.|||.+-+++.+++.+|+++|.+||..+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASEC---FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhC---CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 3567778887877654432 12467888888876 7999999999999999999999999999998766
Q ss_pred cC
Q 022271 168 AS 169 (300)
Q Consensus 168 ~t 169 (300)
-.
T Consensus 108 ~~ 109 (258)
T PRK01033 108 ED 109 (258)
T ss_pred cC
Confidence 44
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=52.40 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHCCC--eEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGV--KVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~G~--~v~~~------------- 116 (300)
.++.+|+ +.|+=|-|+...| +.+++.+.++|++.|+++.-.. +...++.+|+.|. +....
T Consensus 61 ~i~~i~~--~~~~DvHLMv~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~ 137 (228)
T PRK08091 61 AIKQFPT--HCFKDVHLMVRDQ-FEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPY 137 (228)
T ss_pred HHHHhCC--CCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHH
Confidence 3455553 6789899988764 5689999999999999987421 4578888999998 65432
Q ss_pred -------------c---------ChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -------------D---------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -------------~---------~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. ..+.-+.++++..++ .++-|-+.|||. .+-+..+...|||.+++||.+..
T Consensus 138 l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 138 LDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred HhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhC
Confidence 0 122233344443322 246799999996 66888999999999999998543
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=58.96 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=53.5
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.+.+.+.|+.-++. ...+.++.++.+.+ .+||.+.|||++.+++..++.+||+-|.+||..+.
T Consensus 31 P~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~---~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 31 PVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKET---GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHS---SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcC---CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 456677776777766654 12456777888776 79999999999999999999999999999999886
Q ss_pred Ccc
Q 022271 169 SEE 171 (300)
Q Consensus 169 t~E 171 (300)
.+|
T Consensus 108 ~~~ 110 (229)
T PF00977_consen 108 DPE 110 (229)
T ss_dssp CCH
T ss_pred chh
Confidence 643
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=56.66 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=93.6
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...|+..+|++ ... ...++.|..++|..-+++.....+.|++. +. ..+.|+..+|..+..
T Consensus 77 t~llG~~~~~P~~iAP~g-~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa----~~--~~~~~~wfQlY~~~d 149 (383)
T cd03332 77 VELFGRTLAAPLLLAPIG-VQELFHPDAELATARAAAELGVPYILSTASSSSIEDVA----AA--AGDAPRWFQLYWPKD 149 (383)
T ss_pred eeeCCccccccceechHH-HHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHH----hh--cCCCCcEEEeeCCCC
Confidence 45677 57799999997 222 34788888899988888753334554432 22 134578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCC---------------cH--HHHHH-HHH--------CCC-eE------------
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEY---------------SE--ELVLE-AHS--------AGV-KV------------ 113 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~---------------~~--~~v~~-~~~--------~G~-~v------------ 113 (300)
. .+.++.+.+.|++.+.++...| .. ..+.. +.. .+. .-
T Consensus 150 r~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (383)
T cd03332 150 DDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVA 229 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHH
Confidence 2 5678888899999987753221 10 00000 000 000 00
Q ss_pred ------eeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 114 ------VPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 114 ------~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+...-++.-+..+++.. ++|||+- ||.+.+|+..+..+|+|+|.+.
T Consensus 230 ~~~~~~~~~~~tW~~i~~lr~~~---~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 230 RFVSVFSGPSLTWEDLAFLREWT---DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred HHHHhcCCCCCCHHHHHHHHHhc---CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 00011345566666665 7998876 8899999999999999999984
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.028 Score=49.27 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.+... .--|.++.+.+.++..+.+.+.++++|.++
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~---~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNH---IDKVCVVVNPDLTTIEHILSNTSINTIQLH- 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCC---CCEEEEEeCCCHHHHHHHHHhCCCCEEEEC-
Confidence 678888777788877 59998422 245677666655554321 113667777666777777778999999999
Q ss_pred CCCcHHHHHHHHHC--CCeEee
Q 022271 96 GEYSEELVLEAHSA--GVKVVP 115 (300)
Q Consensus 96 G~~~~~~v~~~~~~--G~~v~~ 115 (300)
|..+.+.++.+++. ++.++.
T Consensus 83 G~e~~~~~~~l~~~~~~~~iik 104 (207)
T PRK13958 83 GTESIDFIQEIKKKYSSIKIIK 104 (207)
T ss_pred CCCCHHHHHHHhhcCCCceEEE
Confidence 44467788888753 356554
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.018 Score=49.69 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=95.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCCC-C---------------------CCHHHHHHHHHHHHhh-cCCcEE
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-W---------------------EAPDYLRDLIRKTRSL-TERPFG 67 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~---------------------~~~~~l~~~i~~~r~~-~~~P~g 67 (300)
.|.|-++-- .+++-.=.-..-+.||.+.|-.+- | .+.+++.+.++++|.. ..-|+.
T Consensus 21 vtfiTaG~P-~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIi 99 (268)
T KOG4175|consen 21 VTFITAGDP-DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPII 99 (268)
T ss_pred EEEEecCCC-cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCccccee
Confidence 455555553 455443333445667777663210 1 2334555566666554 234443
Q ss_pred e----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHH---HHHHHHCCCeEeec------------------------
Q 022271 68 V----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL---VLEAHSAGVKVVPQ------------------------ 116 (300)
Q Consensus 68 v----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~---v~~~~~~G~~v~~~------------------------ 116 (300)
. |=+.....+..++.+.+.|+..+.+- ..||++. -.+++++|+..+..
T Consensus 100 LmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-DlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 100 LMGYYNPILRYGVENYIQVAKNAGANGFIIV-DLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred eeecccHHHhhhHHHHHHHHHhcCCCceEec-cCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 2 11112234677888888888776665 4566543 34566788877653
Q ss_pred -----cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -----DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -----~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.| +-+|+.+|+++.+ +.|+-..-||++++.....=.. ||||++|+..+-
T Consensus 179 SrmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 179 SRMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred EeccccccHHHHHHHHHHHHHHHHHhcC--CCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 01 3357788888764 7999999999999998887777 999999998754
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=56.78 Aligned_cols=69 Identities=22% Similarity=0.138 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 98 YSEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+|.+......+.|...+|. .....++.++.+.+ .+||...|||+|.+++..+|.+||+-|.+||..+-
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~~---~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKLL---VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHHHHC---CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4556666667777766654 12456788888776 79999999999999999999999999999998775
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 109 ~ 109 (243)
T TIGR01919 109 N 109 (243)
T ss_pred C
Confidence 4
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.01 Score=51.97 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCcEEeeee-cCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec--c---------
Q 022271 53 DLIRKTRSLTERPFGVGVV-LAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ--D--------- 117 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~-~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~--~--------- 117 (300)
+.++++|+.+..|+=+.++ ...+....++.+.+.|++.|+++.-.. ....++.+++.|..++.. .
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~ 124 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFI 124 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCH
Confidence 4567777766444445554 222223445788899999999986321 245667778888887542 0
Q ss_pred --------------C---------hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccC
Q 022271 118 --------------G---------LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 118 --------------~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t 169 (300)
| .+.-+.++++... .++ .+..|||.... .+..++..|||.+++|+....+
T Consensus 125 ~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~-~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~ 198 (215)
T PRK13813 125 QPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLG-DEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA 198 (215)
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcC-CCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC
Confidence 0 1112223433331 122 34889999863 5888999999999999876544
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=51.33 Aligned_cols=137 Identities=27% Similarity=0.392 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHhCCc--eEEecCCC---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAGG--LGLLRAPD---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++.+=+..++++|. +|++.... +.++++.++ +.+... |.-|.++.+.+..+.++.+.+.++++|-++
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~----l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLH- 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARE----LVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQLH- 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHH----HHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEEE--
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHH----HHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEEEC-
Confidence 5667766667777776 99986532 234444333 333333 346888888877888888999999999999
Q ss_pred CCCcHHHHHHHHHCCCeEeec------------------------------cC---hhchHHHHHHhhCCCCCcEEEccC
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ------------------------------DG---LISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~------------------------------~~---~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
|..+.++++.++ .+..++.. .| .+++++++.+.. .+.|++.|||
T Consensus 79 G~e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~--~~~p~iLAGG 155 (197)
T PF00697_consen 79 GDESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESY--SPKPVILAGG 155 (197)
T ss_dssp SGG-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT---GTSTEEEESS
T ss_pred CCCCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhc--ccCcEEEEcC
Confidence 555677777665 45555432 00 234555554422 1589999999
Q ss_pred CCChHHHHHHHH-CCCcEEEeccccc
Q 022271 143 IVDARGYVAALS-LGAQGICLGTRFV 167 (300)
Q Consensus 143 I~~g~~v~aal~-lGAdgV~~GT~fl 167 (300)
| +++-+..++. .+..||=+-|.+=
T Consensus 156 l-~p~NV~~ai~~~~p~gvDvsSGvE 180 (197)
T PF00697_consen 156 L-NPENVREAIRQVRPYGVDVSSGVE 180 (197)
T ss_dssp ---TTTHHHHHHHC--SEEEESGGGE
T ss_pred C-ChHHHHHHHHhcCceEEEeCCccc
Confidence 9 5668888888 8999988866553
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0037 Score=55.79 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|.++.+...+.|..-+|. ...+.++.++.+.+ .+||.+.|||.+-+++.++|.+||+-|.+||..+..
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~---~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW---PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC---CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 455666666666654443 22466777777766 799999999999999999999999999999987654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.028 Score=49.20 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----HHHHHHHCCCeEeec-----------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE----LVLEAHSAGVKVVPQ----------- 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~----~v~~~~~~G~~v~~~----------- 116 (300)
+.++.+|++ .++++-..+-..+.-.-.++.+.++|++++.+.+-. +.+ .++..|+.|..+...
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 456667776 567776666554444556778888888888876322 322 333345556555432
Q ss_pred -----------------------cC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc-
Q 022271 117 -----------------------DG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE- 171 (300)
Q Consensus 117 -----------------------~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E- 171 (300)
.. .+..+..+++..+ ...+|-.+||| +++++..+...|++-|.+|+.+..+..
T Consensus 124 ~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~-~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp 201 (217)
T COG0269 124 KWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD-LGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKDP 201 (217)
T ss_pred HHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc-cCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCCH
Confidence 11 2456677776652 13789999999 789999999999999999999888765
Q ss_pred cCCCHHHHHHH
Q 022271 172 SYAHPEYKRKL 182 (300)
Q Consensus 172 s~~~~~~k~~i 182 (300)
..+...+++.+
T Consensus 202 ~~~a~~~~~~i 212 (217)
T COG0269 202 AEAARKFKEEI 212 (217)
T ss_pred HHHHHHHHHHH
Confidence 33444555554
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.026 Score=56.42 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=51.9
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.+.++.++.+.+ ++||||+||+++.+|+.+++. .|||++..++-|-...- .....|+.+.+.
T Consensus 470 d~~l~~~v~~~~---~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~--~~~~~k~~l~~~ 532 (538)
T PLN02617 470 DIELVKLVSDAV---TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEV--PISSVKEHLLEE 532 (538)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCC--CHHHHHHHHHHC
Confidence 367888888887 899999999999999999998 67999999999988743 356678777753
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=55.18 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=93.5
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+|++. .. ...+|.+..++|..-+++.....+.|++. +..+.|+..++..+..
T Consensus 64 t~~lG~~~~~P~~iaP~g~-~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva-------~~~~~~~wfQlY~~~d 135 (364)
T PLN02535 64 TTILGYTISAPIMIAPTAM-HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVA-------SSCNAVRFLQLYVYKR 135 (364)
T ss_pred eEECCccccccceechHHH-hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHH-------hcCCCCeEEEEeccCC
Confidence 45677 567999999862 22 24788888899988777664334555443 2345688888887653
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCCc-----HH-----------HHHHHHHCCCe-------------EeeccChhchH
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEYS-----EE-----------LVLEAHSAGVK-------------VVPQDGLISLL 123 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~~-----~~-----------~v~~~~~~G~~-------------v~~~~~~~~ll 123 (300)
..+.++.+.+.|.+.+.+....|- .+ .+......+.. .+...-++.-+
T Consensus 136 r~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i 215 (364)
T PLN02535 136 RDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDI 215 (364)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHH
Confidence 256788888999998877543320 11 01100000000 00001144556
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..+++.. ++|||+ .||.+++++..+..+|+|+|.+.
T Consensus 216 ~~lr~~~---~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 216 EWLRSIT---NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHhcc---CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 6666654 799765 67899999999999999999884
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.023 Score=53.79 Aligned_cols=149 Identities=12% Similarity=0.110 Sum_probs=92.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. .. ...+|.|..++|..-+++.....+.|++. + ..+.|...++..+..
T Consensus 61 t~llG~~~~~P~~iAP~g~-~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa----~---a~~~~~wfQLY~~~D 132 (366)
T PLN02979 61 TTVLGFKISMPIMVAPTAM-QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA----S---TGPGIRFFQLYVYKN 132 (366)
T ss_pred eEECCcccCccceecHHHH-HhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHH----h---ccCCCeEEEEeecCC
Confidence 45677 577999999962 22 24888999999988888764334555432 2 234578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCCc-----HH-----------HHHHHHHC--CC-e-------------EeeccChh
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEYS-----EE-----------LVLEAHSA--GV-K-------------VVPQDGLI 120 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~~-----~~-----------~v~~~~~~--G~-~-------------v~~~~~~~ 120 (300)
. .+.++.+.+.|.+.+.+....|. ++ ........ +- . .+...-++
T Consensus 133 r~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW 212 (366)
T PLN02979 133 RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSW 212 (366)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCH
Confidence 2 56788888999998877533220 00 00011000 00 0 00001133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
.-+..+++.. ++|||+ .||.+.+|+..+..+|+|+|.++.
T Consensus 213 ~dl~wlr~~~---~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 213 KDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred HHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 4456666554 899776 556899999999999999999943
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.034 Score=47.29 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=35.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+..+.++++..+ .++||++.||+.+.+.+..++.+||+|+.+|
T Consensus 158 ~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 158 TVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 4455666666552 1579999999999999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0099 Score=55.63 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++.+|+.+||.+++|+..+...|+|+|.+|+.|+.++.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 56789999999999999999999999999999998753
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.019 Score=53.24 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+..+.++++.. ++||+|-||| +.+.+...+..||+||.+=+.|
T Consensus 269 ~~~~~~~~~~~---~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 269 WEGFAALIAGV---PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 34566666665 7999999999 9999999999999999987765
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0058 Score=55.29 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 98 YSEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.|.++.+..++.|...+|. ...+.++.++++ + ++||=..|||++ +++..+|.+||+-|.+||..+...
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~---~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~ 118 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-Y---PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDG 118 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-C---CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCC
Confidence 3678888888889877775 224566777777 5 799999999997 999999999999999999988764
Q ss_pred ccCCCHHHHHHHHc
Q 022271 171 ESYAHPEYKRKLVE 184 (300)
Q Consensus 171 Es~~~~~~k~~i~~ 184 (300)
| ..+.+-+.+.+
T Consensus 119 ~--~~p~~v~~~~~ 130 (262)
T PLN02446 119 Q--IDLERLKDLVR 130 (262)
T ss_pred C--CCHHHHHHHHH
Confidence 3 33444444433
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=53.68 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+...+.......+.+..+++.|+++|.+.- ++.+.++++ ++.
T Consensus 167 ~i~~~v~~~k~~~--p~~~~I~VEv~tleea~~A~~~GaDiI~LDn--~~~e~l~~~--------------------v~~ 222 (273)
T PRK05848 167 DLKEFIQHARKNI--PFTAKIEIECESLEEAKNAMNAGADIVMCDN--MSVEEIKEV--------------------VAY 222 (273)
T ss_pred cHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHHHcCCCEEEECC--CCHHHHHHH--------------------HHH
Confidence 4566777777653 3223333444467788888899999998762 233333322 111
Q ss_pred hC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+ ..++.+.++||| |.+.+.++..+|+|.+.+|+.+-..
T Consensus 223 ~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 223 RNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred hhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 11 125779999999 9999999999999999999977643
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.045 Score=49.47 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=36.8
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCC--ChHH----HHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIV--DARG----YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~--~g~~----v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++.. ++||+++|||. |.++ +..++.+||+|+.+|+.++...
T Consensus 181 ~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 181 IDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 45566666655 79999999999 5444 4555689999999999988653
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.035 Score=52.78 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=91.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| +..||+.+|++. .. ...+|.+..++|..-+++...-.+.|++. +..+.|+..+|..+..
T Consensus 62 t~~lG~~~~~Pi~iAP~g~-~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva-------~~~~~~~wfQlY~~~D 133 (367)
T PLN02493 62 TTVLGFKISMPIMVAPTAM-QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVA-------STGPGIRFFQLYVYKN 133 (367)
T ss_pred eEECCccccccceechHHH-HhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHH-------hcCCCCcEEEEeecCC
Confidence 45677 578999999962 22 23788888899987777663334555442 2235578888887654
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCCc-----HHH-----------HHHHHHC--CC-e-------------EeeccChh
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEYS-----EEL-----------VLEAHSA--GV-K-------------VVPQDGLI 120 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~~-----~~~-----------v~~~~~~--G~-~-------------v~~~~~~~ 120 (300)
. .+.++.+.+.|.+.+.+....|. .+. ...+... +- . .+...-++
T Consensus 134 r~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW 213 (367)
T PLN02493 134 RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSW 213 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCH
Confidence 2 56788888999998877543220 000 0000000 00 0 00001133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.-+..+++.. ++|||+ .||.+.+|+..+..+|+|+|.+.
T Consensus 214 ~di~wlr~~~---~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 214 KDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred HHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHHcCCCEEEEC
Confidence 4456666554 799776 56679999999999999999994
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.028 Score=49.13 Aligned_cols=133 Identities=20% Similarity=0.368 Sum_probs=89.3
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.|+-+ ||+..+=- .+.+|..+ +.|+.+++.. +--+|.+-+. +.++++.+.+.|.+++..- |. .+++++
T Consensus 29 ~~a~Ali~-gGi~~IEI-Tl~sp~a~-e~I~~l~~~~p~~lIGAGTVL---~~~q~~~a~~aGa~fiVsP-~~-~~ev~~ 100 (211)
T COG0800 29 PLAKALIE-GGIPAIEI-TLRTPAAL-EAIRALAKEFPEALIGAGTVL---NPEQARQAIAAGAQFIVSP-GL-NPEVAK 100 (211)
T ss_pred HHHHHHHH-cCCCeEEE-ecCCCCHH-HHHHHHHHhCcccEEcccccc---CHHHHHHHHHcCCCEEECC-CC-CHHHHH
Confidence 55555555 66777643 24555443 4566665543 3345555544 5789999999999999765 55 578999
Q ss_pred HHHHCCCeEeeccC--------------hhchH-------HHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 105 EAHSAGVKVVPQDG--------------LISLL-------PMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 105 ~~~~~G~~v~~~~~--------------~~~ll-------~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.+++.|+.+++... .+.++ +...++++. .+++++..|||+.- .+..++++|+.+|-
T Consensus 101 ~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~-N~~~yla~gv~avG 179 (211)
T COG0800 101 AANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLD-NAADYLAAGVVAVG 179 (211)
T ss_pred HHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHH-HHHHHHhCCceEEe
Confidence 99999998886511 12222 223334332 36999999999766 99999999988888
Q ss_pred eccccc
Q 022271 162 LGTRFV 167 (300)
Q Consensus 162 ~GT~fl 167 (300)
+||-+.
T Consensus 180 ~Gs~l~ 185 (211)
T COG0800 180 LGSWLV 185 (211)
T ss_pred cCcccc
Confidence 887665
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.091 Score=46.62 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHhCCceEEecCCCC--------CCHHHH---HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc--
Q 022271 28 VAAVANAGGLGLLRAPDW--------EAPDYL---RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-- 94 (300)
Q Consensus 28 a~avs~aGglG~i~~~~~--------~~~~~l---~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~-- 94 (300)
+.+..++|.=|+|-. || .+|+.. ...+++++.....|+|||+.-+++ ...+..+...|+++|-++
T Consensus 40 A~~leegG~DavivE-N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~-vaA~~IA~a~gA~FIRVN~~ 117 (263)
T COG0434 40 AAALEEGGVDAVIVE-NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA-VAALAIAYAVGADFIRVNVL 117 (263)
T ss_pred HHHHHhCCCcEEEEe-ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc-HHHHHHHHhcCCCEEEEEee
Confidence 344556676676643 33 234443 334556666678899999997654 344555666677776321
Q ss_pred -------CCCC---cHHHHHHHHH--CCCeEeec---------------------------------------cChhchH
Q 022271 95 -------WGEY---SEELVLEAHS--AGVKVVPQ---------------------------------------DGLISLL 123 (300)
Q Consensus 95 -------~G~~---~~~~v~~~~~--~G~~v~~~---------------------------------------~~~~~ll 123 (300)
.|.. ..++++.-+. .+++++.+ ......|
T Consensus 118 tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el 197 (263)
T COG0434 118 TGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEEL 197 (263)
T ss_pred eceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHH
Confidence 1211 1222222111 34555543 1245566
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
..++++. +.||++..|+ +.+-+...|.. |||+.+||-|=
T Consensus 198 ~~a~~~~---~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 198 KLAKEAV---DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHHHhcc---CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 6677766 7999999998 56777888888 99999998764
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.11 Score=45.78 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHH----HHHHHHHCCCeEeec--c--------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE----LVLEAHSAGVKVVPQ--D-------- 117 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~----~v~~~~~~G~~v~~~--~-------- 117 (300)
+.++.+|+. +++++-+.|...++.....+.+.+.|++.++++.-. ..+ .++..++.|..+..+ .
T Consensus 45 ~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 45 KAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 347777776 688999999988877666656889999999998532 333 444445567665543 0
Q ss_pred ---------------------C---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 ---------------------G---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 ---------------------~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
| .-..+..+++... .+..+..+|||.-. .+......|||.+++|++...++
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a~ 198 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGAA 198 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCCC
Confidence 0 0112233444332 23448999999743 22334555999999999955553
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.018 Score=52.42 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=36.9
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCC--ChHHHHHHH----HCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIV--DARGYVAAL----SLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~--~g~~v~aal----~lGAdgV~~GT~fl~t 169 (300)
..++.++++.. ++||+++|||. |.+++.+.+ .+||+|+.+|+..+-.
T Consensus 185 ~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 185 PESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 34556665543 79999999999 777766664 8999999999998865
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0078 Score=54.49 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=50.4
Q ss_pred cHHHHHHHHHCCCe--Eeec---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC--CCcEEEecccc
Q 022271 99 SEELVLEAHSAGVK--VVPQ---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 166 (300)
Q Consensus 99 ~~~~v~~~~~~G~~--v~~~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l--GAdgV~~GT~f 166 (300)
+.+++.+..+.|+. ++.. +| .+.++.++.+.+ ++|||++|||++-+|+.+...+ |..+|.+|.++
T Consensus 165 ~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~---~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 165 VDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS---PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 45666666666543 2222 22 567888998886 8999999999999999999998 57899999997
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.025 Score=49.25 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhcC-CcEEeeeecCCC--c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 48 PDYLRDLIRKTRSLTE-RPFGVGVVLAFP--H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~-~P~gvnl~~~~~--~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
.+.+.++|.++++..+ .|+-+ +.... . ....+.+.|.|+++|-++.|-++ .| .+....
T Consensus 100 ~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~---------~~----at~~~v 164 (203)
T cd00959 100 YEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP---------GG----ATVEDV 164 (203)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC----CCHHHH
Confidence 3566777777776643 34333 32221 1 23456677778888877755321 00 001122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.++.++.. .++||.++|||.|.+++.+++.+||+-+
T Consensus 165 ~~~~~~~~----~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 165 KLMKEAVG----GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHhC----CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 33333333 2799999999999999999999999843
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.022 Score=50.05 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhcC-CcEEeeeecCCC---c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccCh
Q 022271 47 APDYLRDLIRKTRSLTE-RPFGVGVVLAFP---H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~-~P~gvnl~~~~~---~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
+.+.+.++|+++++..+ .|+=| +.... . ....+.+.+.|+++|=++.|-.+ .| .+
T Consensus 100 ~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~---------~g-------at 161 (211)
T TIGR00126 100 NEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA---------GG-------AT 161 (211)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC---------CC-------CC
Confidence 45677777777776543 33333 33221 1 23456677788888877755321 01 12
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
..-+..+++.+++ ++||-++|||.|.+++.+++.+||+-+
T Consensus 162 ~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 162 VEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 2222223333332 699999999999999999999999853
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0079 Score=53.68 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=53.8
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|-++++.+.+.|..-+|. .....++.++.+.. ..||...|||++-+++..++.+||+-|.+||..+..
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~---~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIG---FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 567777777777765553 12345666666632 259999999999999999999999999999988876
Q ss_pred cc
Q 022271 170 EE 171 (300)
Q Consensus 170 ~E 171 (300)
+|
T Consensus 109 p~ 110 (232)
T PRK13586 109 FN 110 (232)
T ss_pred HH
Confidence 43
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.041 Score=52.61 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred ccccC--CccceecCCCCCCCC------cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+++|| ...||+.+|++. .. ...+|.+..++|..=+++.....+.|++. +..+.|+..+|..+..
T Consensus 62 t~llG~~~~~Pi~iAP~g~-~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia-------~~~~~~~wfQlY~~~D 133 (381)
T PRK11197 62 TTLFGEKLSMPVALAPVGL-TGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVA-------PAIKRPMWFQLYVLRD 133 (381)
T ss_pred eEECCcccccchhhChHHH-hhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHH-------hccCCCeEEEEEecCC
Confidence 45677 577999999962 22 35788888899975555543223444442 2245688888876653
Q ss_pred c---HHHHHHHHHcCCcEEEEcCCCC---------------cH----HHHHHH----------HHCCCeEe---ec----
Q 022271 76 H---NENIKAILSEKVAVLQVSWGEY---------------SE----ELVLEA----------HSAGVKVV---PQ---- 116 (300)
Q Consensus 76 ~---~~~~~~~~e~g~~~i~~~~G~~---------------~~----~~v~~~----------~~~G~~v~---~~---- 116 (300)
. .+.++.+.+.|.+.+.+....| |. .+.+.+ ...+-.-+ .+
T Consensus 134 r~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~ 213 (381)
T PRK11197 134 RGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGK 213 (381)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccccc
Confidence 2 5678888889999887754322 10 011100 00000000 00
Q ss_pred -c----------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 -D----------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 -~----------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
. -++.-+..+++.. ++||| ..||.+.+++..++.+|+|+|.++
T Consensus 214 ~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~---~~pvi-vKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 214 PTGLEDYIGWLGNNFDPSISWKDLEWIRDFW---DGPMV-IKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred ccchhHHHHHHHhccCCCCCHHHHHHHHHhC---CCCEE-EEecCCHHHHHHHHhCCCCEEEEC
Confidence 0 1223366677765 78965 577899999999999999999883
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0078 Score=54.01 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-++.+.+.+.|...+|. . ..+.++.++.+.+ .||...|||++-+++..++.+||+-|.+||..+-
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~----~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA----EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc----CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 567777777778765553 1 1346677777654 6999999999999999999999999999998776
Q ss_pred Ccc
Q 022271 169 SEE 171 (300)
Q Consensus 169 t~E 171 (300)
.+|
T Consensus 108 ~p~ 110 (241)
T PRK14114 108 DPS 110 (241)
T ss_pred CHH
Confidence 543
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.023 Score=55.63 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------- 116 (300)
.++++|+.++.|+-.+=+. -++.++......|++.|.+-....+ .++++..++.|..++.-
T Consensus 101 ~l~~vr~~v~~PvLrKDFi--id~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 101 FLPIVRAIVTQPILCKDFI--IDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHhCCCCEEecccc--CCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 4567777777777443222 2456677777778887765332222 23445555566555432
Q ss_pred -----------cChh----chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 -----------DGLI----SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -----------~~~~----~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..++ ..-.++...+. .++.+|+.+||.+++|+..+. .|||||.+|+.++.++.
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d 246 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDD 246 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCC
Confidence 1111 11222333332 268899999999999998865 48999999999999853
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=43.67 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+..+.++| .+|++... -+.++++.++..+.++. ..--|.++.....++..+.+.+.++++|.++.
T Consensus 9 Gi~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~---~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 9 GITTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPP---FVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred CCCcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 677777777777776 59998422 23566666655554432 11235567766667777888889999999995
Q ss_pred CCCcHHHHHHHHH-CCCeEee
Q 022271 96 GEYSEELVLEAHS-AGVKVVP 115 (300)
Q Consensus 96 G~~~~~~v~~~~~-~G~~v~~ 115 (300)
. .+.+.++.+++ .+..++.
T Consensus 86 ~-e~~~~~~~l~~~~~~~iik 105 (210)
T PRK01222 86 D-ETPEFCRQLKRRYGLPVIK 105 (210)
T ss_pred C-CCHHHHHHHHhhcCCcEEE
Confidence 4 45677877775 3555553
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.066 Score=49.45 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=83.0
Q ss_pred CccceecCC-CCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 9 FEYGIVQAP-LGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 9 ~~~Pii~ap-M~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
++.||+.|. +. -.+.+++.....+| +|++-.+. + ..++...+.+...+
T Consensus 11 ~~nPv~~aag~~--~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 87 (301)
T PRK07259 11 LKNPVMPASGTF--GFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWL 87 (301)
T ss_pred CCCCcEECCcCC--CCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHH
Confidence 678999865 32 34558888776666 55542211 0 11233333333333
Q ss_pred hhcCCcEEeeeecCCCc--HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCC-CeEeec-cChhchHHHHHHhhCCCC
Q 022271 60 SLTERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAG-VKVVPQ-DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 60 ~~~~~P~gvnl~~~~~~--~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G-~~v~~~-~~~~~ll~~v~~~~~~~~ 134 (300)
+..+.|+.+|+....+. .+.++.+.++| ++.|.++++||.. ..| ...... .-+..++..|++++ +
T Consensus 88 ~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~-------~~gg~~~~~~~~~~~eiv~~vr~~~---~ 157 (301)
T PRK07259 88 EEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV-------KHGGMAFGTDPELAYEVVKAVKEVV---K 157 (301)
T ss_pred hccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC-------CCCccccccCHHHHHHHHHHHHHhc---C
Confidence 33478999999876542 45567777788 9999999998631 122 222211 11345555666655 7
Q ss_pred CcEEEccC--CCChHHHHHHH-HCCCcEEEe
Q 022271 135 IPIIAAGG--IVDARGYVAAL-SLGAQGICL 162 (300)
Q Consensus 135 iPViaaGG--I~~g~~v~aal-~lGAdgV~~ 162 (300)
+||++=-. +.+...+++.+ ..|+|++.+
T Consensus 158 ~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 158 VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 89887433 44555566544 589999876
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=55.75 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCCc------H---HHHHHHHHcCCcEEEEcCCCCcHHHHH-HHHHCCCeEeecc
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFPH------N---ENIKAILSEKVAVLQVSWGEYSEELVL-EAHSAGVKVVPQD 117 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~~------~---~~~~~~~e~g~~~i~~~~G~~~~~~v~-~~~~~G~~v~~~~ 117 (300)
-+.+.|+.+|+.. +.|+++.+...... + +.++.+.+.+++++.++.+.... ... ...... .... .
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~-~ 277 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVH-WSEPRPSPPF-DFEP-G 277 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEE-EEBTSSTTTT-TTTT-T
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhcccccccccc-cccccccccc-cccc-c
Confidence 3566788888874 46788888776431 2 23566667777766543222100 000 000000 0000 0
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
..+.+...+++.+ ++|||+.|||.+++.+.+++..| ||.|.||+.|++-++
T Consensus 278 ~~~~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 278 YNLDLAEAIKKAV---KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp TTHHHHHHHHHHH---SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhhhhc---CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 1234566777777 79999999999999999999987 999999999998754
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.024 Score=54.79 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=79.4
Q ss_pred HHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE-----------
Q 022271 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV----------- 93 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~----------- 93 (300)
+.+..+.++| +-.+-.- -..+.+++.+.++++++++. .+++.++.++ .++.+++.+++.|-+
T Consensus 221 ~~ve~aL~aG-v~~VQLReK~ls~~el~~la~~l~~l~~-~~gv~LiIND----~~dlAl~~gAdGVHLGQeDL~~~~aR 294 (437)
T PRK12290 221 EWIERLLPLG-INTVQLRIKDPQQADLEQQIIRAIALGR-EYNAQVFIND----YWQLAIKHQAYGVHLGQEDLEEANLA 294 (437)
T ss_pred HHHHHHHhCC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEEC----HHHHHHHcCCCEEEcChHHcchhhhh
Confidence 4566666766 3443110 01466788888888887653 2455555543 355555555555533
Q ss_pred -----------cCCCCcHHHHHHHHHCCCeEeec---c-------C----hhchHHHHHHhhCC------CCCcEEEccC
Q 022271 94 -----------SWGEYSEELVLEAHSAGVKVVPQ---D-------G----LISLLPMVVDLIGD------RDIPIIAAGG 142 (300)
Q Consensus 94 -----------~~G~~~~~~v~~~~~~G~~v~~~---~-------~----~~~ll~~v~~~~~~------~~iPViaaGG 142 (300)
+.-+ ..+ +.+..+.|...+.. . + -+..+.++++.+.. .++||+|-||
T Consensus 295 ~ilg~~~iIGvStHs-~eE-l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGG 372 (437)
T PRK12290 295 QLTDAGIRLGLSTHG-YYE-LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGG 372 (437)
T ss_pred hhcCCCCEEEEecCC-HHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECC
Confidence 2211 122 23333445444322 0 0 12345555544310 2699999999
Q ss_pred CCChHHHHHHHHCCCcEEEeccccccC
Q 022271 143 IVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 143 I~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
| +.+.+..++..||+||.+=+.++.+
T Consensus 373 I-~~~Ni~~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 373 I-DQSNAEQVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred c-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 9 8899999999999999999998854
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.077 Score=46.62 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=37.0
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+.++.+.. .++||+|-|||. .+.+.+.+..||+||.+-+.++.+.
T Consensus 148 ~l~~~~~~~--~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 148 QLARHVERL--ADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHHHHhc--CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhCCC
Confidence 345555442 269999999995 8899999999999999999998554
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.065 Score=53.19 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCceEEecC-CCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--------------
Q 022271 25 PELVAAVANAGGLGLLRA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA-------------- 89 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~-~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~-------------- 89 (300)
.+.+....++| +..+-. .-..+.+++.+.+++++++..+ +++.++.+.. .+.+.+.+++
T Consensus 310 ~~~l~~~l~~G-v~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~liind~----~~lA~~~~adGvHl~~~d~~~~~~ 383 (502)
T PLN02898 310 VDAVRAAIEGG-ATIVQLREKEAETREFIEEAKACLAICRS-YGVPLLINDR----VDVALACDADGVHLGQSDMPVRLA 383 (502)
T ss_pred HHHHHHHHHcC-CCEEEEccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEcCh----HHHHHhcCCCEEEeChHhcCHHHH
Confidence 34566666766 444421 0124667777888887766432 3444454321 2222222222
Q ss_pred --------EEEEcCCCCcHHHHHHHHHCCCeEeec---c----------ChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 90 --------VLQVSWGEYSEELVLEAHSAGVKVVPQ---D----------GLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 90 --------~i~~~~G~~~~~~v~~~~~~G~~v~~~---~----------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
+|..++.. ..+ +.+..+.|...+.. . --+..+.++++.. ++||++-||| +.+.
T Consensus 384 r~~~~~~~~iG~S~h~-~~e-~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiGGI-~~~~ 457 (502)
T PLN02898 384 RSLLGPGKIIGVSCKT-PEQ-AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIGGI-SASN 457 (502)
T ss_pred HHhcCCCCEEEEeCCC-HHH-HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEECCC-CHHH
Confidence 34444433 233 34444566665532 0 0234566666554 7999999999 5889
Q ss_pred HHHHHHCCCc---EEEeccccccC
Q 022271 149 YVAALSLGAQ---GICLGTRFVAS 169 (300)
Q Consensus 149 v~aal~lGAd---gV~~GT~fl~t 169 (300)
+..++..||+ ||.+++.++-+
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcC
Confidence 9999999999 99999999854
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=53.65 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=47.9
Q ss_pred cHHHHHHHHHCCCeEeecc------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 99 SEELVLEAHSAGVKVVPQD------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~~------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
..++++.+.++|+.++... +...-+.++.+.+ ++|||+ |+|.|.+++.+++..|||+|++|+.
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~---~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL---DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC---CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 3577788888998877631 1233355555555 799997 9999999999999999999998743
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.062 Score=46.16 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=81.9
Q ss_pred HHHHHHhhcCCc--EEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERP--FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P--~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~------------- 116 (300)
.++.+|+.+++| |-+-++... .++.++.+.++|+..++++.-. -+..+++++|+.|.++...
T Consensus 53 vV~slR~~~~~~~ffD~HmMV~~-Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~ 131 (224)
T KOG3111|consen 53 VVESLRKHTGADPFFDVHMMVEN-PEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPL 131 (224)
T ss_pred HHHHHHhccCCCcceeEEEeecC-HHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHh
Confidence 467778877776 566666643 3678999999999999998521 1468999999999998753
Q ss_pred ---------------cC----hhchHHHHHHhhCCCCCcEE-EccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ---------------DG----LISLLPMVVDLIGDRDIPII-AAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ---------------~~----~~~ll~~v~~~~~~~~iPVi-aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.| ..+.+|.|...-....-+.| ..||+. +..+-++..+||+.++.||+...+.
T Consensus 132 ~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a~ 204 (224)
T KOG3111|consen 132 AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAA 204 (224)
T ss_pred hccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeecCC
Confidence 01 12455665543311123344 899995 5678889999999999999998874
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.028 Score=53.59 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=46.2
Q ss_pred cHHHHHHHHHCCCeEeeccC------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 99 SEELVLEAHSAGVKVVPQDG------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~~~------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
..+.++.+.++|+.++...+ ...-+.++.+.. ++|||+ |+|.|.+++.+++.+|||+|++|.
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~---~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL---DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC---CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 35777788889988776421 122233344443 799999 999999999999999999999983
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.014 Score=51.19 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.++.+...+.|...++. .+.+..+..+++.+ ++||+.-|+|.+..++..++.+|||+|.+|+..+-
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence 34455555555555543 24567777788776 79999999999999999999999999999988654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.12 Score=47.56 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=40.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEcc--CCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaG--GI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+..|.++.+.+ ++|+++=| || +.+++.+++..|+++|-+.|.+...
T Consensus 188 ~~~~L~~i~~~~---~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 188 RFDRLQEINDVV---HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHHH
Confidence 356788888877 79999999 88 4567999999999999999999873
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.27 Score=48.18 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.+. .--|.++.+.+..+..+.+.+.++++|.++
T Consensus 263 Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~-----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH- 336 (454)
T PRK09427 263 GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP-----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH- 336 (454)
T ss_pred CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC-----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC-
Confidence 678888888888877 49997421 2456776666555543 223667777666677777888999999999
Q ss_pred CCCcHHHHHHHHHC---CCeEeeccC-----------------------------hhchHHHHHHhhCCCCCcEEEccCC
Q 022271 96 GEYSEELVLEAHSA---GVKVVPQDG-----------------------------LISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 96 G~~~~~~v~~~~~~---G~~v~~~~~-----------------------------~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
|..+.+.++.+++. ++.++.... .+.+++ ... ..|++.||||
T Consensus 337 G~e~~~~~~~l~~~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~---~~~---~~p~iLAGGL 410 (454)
T PRK09427 337 GDEDQAYIDALREALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLP---GQS---LDNVLLAGGL 410 (454)
T ss_pred CCCCHHHHHHHHhhcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhh---hcc---cCCEEEECCC
Confidence 55566778887752 344443200 011111 111 3578888887
Q ss_pred CChHHHHHHHHCCCcEEEecccc
Q 022271 144 VDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+++.+..++..+..||=+-|.+
T Consensus 411 -~peNV~~ai~~~P~gVDVsSGV 432 (454)
T PRK09427 411 -NPDNCQQAAQLGCAGLDFNSGV 432 (454)
T ss_pred -CHHHHHHHHhcCCCEEEeCCcc
Confidence 5666666667777777775554
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.26 Score=44.68 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+++++| .+||+... -+.++++.++..+.++... .--|.++...+.++.++.+.+.++++|.++.
T Consensus 53 Git~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~--~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 53 GITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREGG--AKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccC--ccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 678888787778877 49998422 2467777776666554211 1136667776667778888889999999994
Q ss_pred CCCcHHHHHHHH
Q 022271 96 GEYSEELVLEAH 107 (300)
Q Consensus 96 G~~~~~~v~~~~ 107 (300)
..+.+.++.++
T Consensus 131 -~e~~~~~~~l~ 141 (256)
T PLN02363 131 -NGSRAAFSRLV 141 (256)
T ss_pred -CCCHHHHHHhh
Confidence 44566666665
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.022 Score=50.74 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred cHHHHHHHHHCCCeEeec---cC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---DG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-+......+.|...+|. .+ ...++.++++.+ ++||=..|||+|-+++.+.|.+|++-|.+||.-+-
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 566777777888888876 11 346777777776 89999999999999999999999999999998743
Q ss_pred CcccCCCHHHHHHHHcCCC
Q 022271 169 SEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~a~~ 187 (300)
. ++..|+.+.+-.+
T Consensus 110 ~-----p~~v~~~~~~~g~ 123 (241)
T COG0106 110 N-----PDLVKELCEEYGD 123 (241)
T ss_pred C-----HHHHHHHHHHcCC
Confidence 3 5567776666543
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=50.67 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=45.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+.++.++.+.+ .+|+-.+|||.+-+|+.+.|.+|||-|-+.|+-+..+|
T Consensus 62 ~~~vv~r~A~~v---fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~ 111 (256)
T COG0107 62 MLDVVERVAEQV---FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPE 111 (256)
T ss_pred HHHHHHHHHhhc---eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChH
Confidence 567777888777 89999999999999999999999999999999888765
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.07 Score=49.12 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... ++++| ...+.+.+..+++.|+|+|-+.--. + +-++++ ++.++.
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~~~GaD~I~LDn~~-~-e~l~~a----------------v~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEALEYGADIIMLDNMP-V-DLMQQA----------------VQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHHHcCCCEEEECCCC-H-HHHHHH----------------HHHHHh
Confidence 5667777777542 23333 2235677777888899999886222 2 223321 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.. .++|+.++||| |.+.+.++...|+|++.+|+.+.-+
T Consensus 240 ~~--~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa 277 (288)
T PRK07428 240 QN--PRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRS 277 (288)
T ss_pred cC--CCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCC
Confidence 11 27899999999 7999999999999999999876643
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.14 Score=46.71 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+...++++|+.. ++++++-.- +.+.+..+.+.++|+|-+.- ...+.+ .++++
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~----t~eea~~A~~~gaDyI~ld~--~~~e~l--------------------k~~v~ 217 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE----SLEEAEEAAEAGADIIMLDN--MKPEEI--------------------KEAVQ 217 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC----CHHHHHHHHHcCCCEEEECC--CCHHHH--------------------HHHHH
Confidence 445566777654 345554332 34556666777888777742 112222 23333
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++. .+||.+.||| +.+.+.++...|+|++.+|..+-..
T Consensus 218 ~~~~-~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa 256 (265)
T TIGR00078 218 LLKG-RVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSV 256 (265)
T ss_pred HhcC-CCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCC
Confidence 3321 4899999999 7899999999999999997765544
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=47.04 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... +.+|+ -. .+.++++.+.+.++|.|.+.. . ....+.++++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igv--sv--~tleea~~A~~~gaDyI~lD~-~---------------------~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEV--ET--ETEEQVREAVAAGADIIMFDN-R---------------------TPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEE--Ee--CCHHHHHHHHHcCCCEEEECC-C---------------------CHHHHHHHHH
Confidence 5666777777643 23333 22 235566666778888887631 1 1233334444
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++ .++||.|.||| +.+.+.++...|+|+|.+|..+-
T Consensus 228 ~~~-~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 228 LVP-SAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred hcC-CCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 432 15888899999 89999999999999999998654
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.4 Score=44.12 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=44.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccC--CCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGG--I~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++++.+ ++|+++-|| |. .+++.+++.+|++.|-++|.+... ....+|+.+
T Consensus 191 ~~e~l~~i~~~~---~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a----~~~~~~~~~ 248 (286)
T PRK06801 191 DFARLAAIHQQT---GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQA----ALAAVEQRM 248 (286)
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHH----HHHHHHHHH
Confidence 456778887776 799999999 76 467899999999999999998776 344555555
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.026 Score=50.27 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=35.8
Q ss_pred hchHHHHHHhhCCCCCc----EEEccCC------CChHHHHHHHHCCC--cEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIP----IIAAGGI------VDARGYVAALSLGA--QGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iP----ViaaGGI------~~g~~v~aal~lGA--dgV~~GT~f 166 (300)
..++.++.+.. ++| |.++||| .+.+++.+++.+|| .|+..|...
T Consensus 178 ~~~~~~~~~~~---~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 178 VELMRKAVEAA---PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp HHHHHHHHHTH---SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred HHHHHHHHHhc---CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 45556666655 688 9999999 99999999999999 898888654
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.017 Score=52.12 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=38.8
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC--CCcEEEecccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRFVA 168 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l--GAdgV~~GT~fl~ 168 (300)
.+.++.++.+.+ ++||||+||+++-+|+.+...+ |..++.+|.++.-
T Consensus 189 dlel~~~l~~~~---~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 189 DEELVSKLGEWS---PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 467888888876 8999999999999999988554 6777888877654
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.16 Score=46.25 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+...++++|+... ++++|..- +.+.+..+++.++++|.+.- ..+ +.++++ +..+.+
T Consensus 167 ~~~~v~~~r~~~~~~~~I~vev~----t~eea~~A~~~gaD~I~ld~-~~~-e~l~~~----------------v~~i~~ 224 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVE----TLEEAEEALEAGADIIMLDN-MSP-EELKEA----------------VKLLKG 224 (269)
T ss_pred HHHHHHHHHHhCCCCCeEEEecC----CHHHHHHHHHcCCCEEEECC-CCH-HHHHHH----------------HHHhcc
Confidence 3355777777642 44555442 34566666778888887752 222 223221 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. .++||.+.||| +.+.+.++...|+|++.+|+.+-..
T Consensus 225 ~---~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 225 L---PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred C---CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 1 26899999999 5789999999999999998766554
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.2 Score=45.62 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=58.1
Q ss_pred HHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
...++++|+.. +++++|-.- +.+.+..+.+.++++|.+.- . . ...+.++++.
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~----s~eea~~A~~~gaDyI~ld~-~-~--------------------~e~l~~~~~~ 222 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE----TLEQLKEALEAGADIIMLDN-M-S--------------------PEELREAVAL 222 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC----CHHHHHHHHHcCCCEEEECC-c-C--------------------HHHHHHHHHH
Confidence 34566666653 234444332 34556666677777777641 1 1 1233344444
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++. ++|+.+.||| +.+.+..+...|+|++.+|+.+--.
T Consensus 223 ~~~-~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 223 LKG-RVLLEASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred cCC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 321 5899999999 7899999999999999999976533
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=45.74 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+.+++....+.-++++..... ....+.+.+.|+++|=+|.|-.+ .| .+.
T Consensus 107 ~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~---------~g-------AT~ 170 (228)
T COG0274 107 NWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSA---------GG-------ATV 170 (228)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCC---------CC-------CCH
Confidence 578888889988887655445677765432 23467778889999977766421 01 123
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
.-+.-+++.+. .++.|=++|||+|.+|+.+++.+||.
T Consensus 171 edv~lM~~~vg-~~vgvKaSGGIrt~eda~~~i~aga~ 207 (228)
T COG0274 171 EDVKLMKETVG-GRVGVKASGGIRTAEDAKAMIEAGAT 207 (228)
T ss_pred HHHHHHHHHhc-cCceeeccCCcCCHHHHHHHHHHhHH
Confidence 32333333332 26889999999999999999999954
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.034 Score=55.57 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHCCCeEeec---cC----------hhchHHHHHHhhCCCCCcEEEccCCCCh-----------HHHHH
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ---DG----------LISLLPMVVDLIGDRDIPIIAAGGIVDA-----------RGYVA 151 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~---~~----------~~~ll~~v~~~~~~~~iPViaaGGI~~g-----------~~v~a 151 (300)
|. |-++.+...+.|+.-++. .+ .+.++.++.+.+ .+||-+.|||.|- +++.+
T Consensus 267 gd-Pve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 267 GK-PVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CC-HHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHHHHHH
Confidence 54 567788888888865543 11 255777777766 7999999999998 56899
Q ss_pred HHHCCCcEEEeccccccCc
Q 022271 152 ALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~ 170 (300)
+|.+|||-|.+||.-+..+
T Consensus 343 ~l~~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAA 361 (538)
T ss_pred HHHcCCCEEEEChHHHhCh
Confidence 9999999999999777653
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.052 Score=51.64 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
..+|++.+ ++||++.|++ |++.+.+++.-| ||.|.||+.|++-++ +-+++.+
T Consensus 284 ~~~ik~~~---~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd------~~~k~~~ 336 (362)
T PRK10605 284 REKVRARF---HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPD------LVARLQR 336 (362)
T ss_pred HHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCcc------HHHHHhc
Confidence 34566665 7899999997 899999999998 999999999998753 5555555
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.49 Score=43.48 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=58.2
Q ss_pred HHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEcc--CCCChHHHHHHH
Q 022271 77 NENIKAIL-SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAAL 153 (300)
Q Consensus 77 ~~~~~~~~-e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaG--GI~~g~~v~aal 153 (300)
.+.+...+ +.|++.+.+++|.... .-. +. . .-.+.+|.++++.+ ++|+++=| ||.+ +++.+++
T Consensus 155 ~eea~~f~~~tgvD~Lavs~Gt~hg-~~~-----~~---~-~l~~e~L~~i~~~~---~iPlv~hGgSGi~~-e~i~~~i 220 (282)
T TIGR01859 155 PDEAEQFVKETGVDYLAAAIGTSHG-KYK-----GE---P-GLDFERLKEIKELT---NIPLVLHGASGIPE-EQIKKAI 220 (282)
T ss_pred HHHHHHHHHHHCcCEEeeccCcccc-ccC-----CC---C-ccCHHHHHHHHHHh---CCCEEEECCCCCCH-HHHHHHH
Confidence 33344444 3677777776664211 000 10 0 11367888898887 79999999 8854 5799999
Q ss_pred HCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 154 SLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 154 ~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
..|+++|-++|-+..+ .....|+.+
T Consensus 221 ~~Gi~kiNv~T~l~~a----~~~~~~~~~ 245 (282)
T TIGR01859 221 KLGIAKINIDTDCRIA----FTAAIRKVL 245 (282)
T ss_pred HcCCCEEEECcHHHHH----HHHHHHHHH
Confidence 9999999999998765 344455555
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.31 Score=44.65 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=48.2
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
+.+.++.+++.++|+|.+. ....+.++ ++++.++ .++|+.++||| +.+.+.++...
T Consensus 198 tleea~eA~~~gaD~I~LD--~~~~e~l~--------------------~~v~~~~-~~i~leAsGGI-t~~ni~~~a~t 253 (277)
T PRK05742 198 SLDELRQALAAGADIVMLD--ELSLDDMR--------------------EAVRLTA-GRAKLEASGGI-NESTLRVIAET 253 (277)
T ss_pred CHHHHHHHHHcCCCEEEEC--CCCHHHHH--------------------HHHHHhC-CCCcEEEECCC-CHHHHHHHHHc
Confidence 3566666777777777663 22223233 2223222 16899999999 79999999999
Q ss_pred CCcEEEeccccccC
Q 022271 156 GAQGICLGTRFVAS 169 (300)
Q Consensus 156 GAdgV~~GT~fl~t 169 (300)
|+|++.+|+.+-..
T Consensus 254 GvD~Isvg~lt~s~ 267 (277)
T PRK05742 254 GVDYISIGAMTKDV 267 (277)
T ss_pred CCCEEEEChhhcCC
Confidence 99999999865443
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.18 Score=46.08 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=55.7
Q ss_pred HHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 52 RDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 52 ~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
.+.++++|+.. +++++|-.- +.+.+..+.+.++++|-+.- ..|.. ++ .++..++...
T Consensus 171 ~~av~~~R~~~~~~~IgVev~----t~eea~~A~~~gaD~I~ld~-~~p~~-l~----------------~~~~~~~~~~ 228 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD----SLEEALAAAEAGADILQLDK-FSPEE-LA----------------ELVPKLRSLA 228 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC----CHHHHHHHHHcCCCEEEECC-CCHHH-HH----------------HHHHHHhccC
Confidence 45666676653 234444322 23455556678888887752 22221 11 1222222221
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++|+++.||| +.+.+.++...|+|++.+|.-+-
T Consensus 229 --~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~~ 262 (272)
T cd01573 229 --PPVLLAAAGGI-NIENAAAYAAAGADILVTSAPYY 262 (272)
T ss_pred --CCceEEEECCC-CHHHHHHHHHcCCcEEEEChhhc
Confidence 26999999999 88999999999999997776543
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=40.62 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=44.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCC-ChHH----HHHH
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIV-DARG----YVAA 152 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~-~g~~----v~aa 152 (300)
++|.++|.+....|++++++.+.+.+..++.. ..++..++++.+.+++ .++||+..|.+. .+.+ ..+.
T Consensus 25 ~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L 104 (128)
T cd02072 25 EAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRF 104 (128)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHH
Confidence 34555555544444555555555555444432 2244455555555432 268899988875 2233 3557
Q ss_pred HHCCCcEEEe
Q 022271 153 LSLGAQGICL 162 (300)
Q Consensus 153 l~lGAdgV~~ 162 (300)
.++|.++|.=
T Consensus 105 ~~~Gv~~vf~ 114 (128)
T cd02072 105 KEMGFDRVFA 114 (128)
T ss_pred HHcCCCEEEC
Confidence 7899998763
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.69 Score=42.93 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=86.0
Q ss_pred CccceecCC--------CCCCCCcHH-HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh-hcCCcEEeeeecC-----
Q 022271 9 FEYGIVQAP--------LGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLA----- 73 (300)
Q Consensus 9 ~~~Pii~ap--------M~~g~s~~~-la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~-~~~~P~gvnl~~~----- 73 (300)
+++-+-.+| +. |..+++ +...+.++|. ..+.. +.- .++.... ..+.|+-+.+-..
T Consensus 38 ~DHG~~~Gp~~~~~~~~~~-gl~dp~~~i~~~~~~g~-dav~~----~~G----~l~~~~~~~~~~~lIlkl~~~t~l~~ 107 (304)
T PRK06852 38 GDQKIEHLNDDFYGEGIAK-DDADPEHLFRIASKAKI-GVFAT----QLG----LIARYGMDYPDVPYLVKLNSKTNLVK 107 (304)
T ss_pred ccCCcccCCcccccccCCc-ccCCHHHHHHHHHhcCC-CEEEe----CHH----HHHhhccccCCCcEEEEECCCCCcCC
Confidence 567777788 86 787775 7777777664 33322 122 2222211 1345655554431
Q ss_pred ----CCc---HHHHHHHHHcC------CcEEEE--cCCCCc--------HHHHHHHHHCCCeEeec--------------
Q 022271 74 ----FPH---NENIKAILSEK------VAVLQV--SWGEYS--------EELVLEAHSAGVKVVPQ-------------- 116 (300)
Q Consensus 74 ----~~~---~~~~~~~~e~g------~~~i~~--~~G~~~--------~~~v~~~~~~G~~v~~~-------------- 116 (300)
.+. ...++.++..| ++.|.+ .+|... .++++++++.|+.++..
T Consensus 108 ~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~ 187 (304)
T PRK06852 108 TSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDP 187 (304)
T ss_pred cccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccH
Confidence 111 12366677766 666654 345421 24556677778777642
Q ss_pred ----------------------c-----ChhchHHHHHHhhCCCCCcEEEccCCCCh-HH----HHHHHH-CCCcEEEec
Q 022271 117 ----------------------D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG----YVAALS-LGAQGICLG 163 (300)
Q Consensus 117 ----------------------~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~----v~aal~-lGAdgV~~G 163 (300)
. +....+.++++... .+||+.+||=... ++ +..++. .||.||.+|
T Consensus 188 ~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 188 HLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 1 22345666666542 6999999998853 33 445667 899999999
Q ss_pred cccccC
Q 022271 164 TRFVAS 169 (300)
Q Consensus 164 T~fl~t 169 (300)
+-..-.
T Consensus 266 RNIfQ~ 271 (304)
T PRK06852 266 RNIHQK 271 (304)
T ss_pred hhhhcC
Confidence 654444
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=40.74 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=46.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCC
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
..|.+++....-.+++++++...+.+..++.. ...+..++++.+.+++ .+++|++.|.+ ..++......+|.
T Consensus 28 ~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~~~~l~~~Gv 106 (132)
T TIGR00640 28 DLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI-PPQDFDELKEMGV 106 (132)
T ss_pred hCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHhHHHHHHCCC
Confidence 34555555543334555555555555555443 2244566666666643 14666664445 5678888999999
Q ss_pred cEEE-eccc
Q 022271 158 QGIC-LGTR 165 (300)
Q Consensus 158 dgV~-~GT~ 165 (300)
|++. .||.
T Consensus 107 d~~~~~gt~ 115 (132)
T TIGR00640 107 AEIFGPGTP 115 (132)
T ss_pred CEEECCCCC
Confidence 8765 3443
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.39 Score=50.18 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=39.9
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..+.++++.++..++||+|-||| +.+++.+++..||+||.+-+.++.+
T Consensus 153 ~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 153 DGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred HHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46777777662113999999999 8999999999999999999999854
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.2 Score=41.05 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=44.7
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+.++.++.+++ ++|++.-||=..+ +++.+++.+|...|-+||-+..+ .....|+.+
T Consensus 188 ~~~l~~I~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a----~~~~~~~~l 244 (283)
T PRK07998 188 IPLLKRIAEVS---PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA----FITTVGKAY 244 (283)
T ss_pred HHHHHHHHhhC---CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH----HHHHHHHHH
Confidence 56788888876 8999999999988 67888999999999999987655 234455544
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=46.96 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=52.9
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.....+.|...+.. -|.+..+.+++..+ ++||+.-..|.|..++..+..+|||+|.+=.+++-
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v---~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL---KIPVLRKDFILDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc---CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 455666666666654432 45788999999987 79999999999999999999999999977555543
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.66 Score=41.99 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCcEEeeeecCC-----Cc----HHHHHHHHHcCCcEEEE--cCCCCc--------HHHHHHHHHCCCeEeec-------
Q 022271 63 ERPFGVGVVLAF-----PH----NENIKAILSEKVAVLQV--SWGEYS--------EELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 63 ~~P~gvnl~~~~-----~~----~~~~~~~~e~g~~~i~~--~~G~~~--------~~~v~~~~~~G~~v~~~------- 116 (300)
+.|+-+.+.... +. ...++.++..|++.|.+ .+|+.. ..++..+++.|..++..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 667777665531 11 23467777888888764 456543 24455567778776542
Q ss_pred -------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCC-h-----HHHHHHHHCCCcE
Q 022271 117 -------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVD-A-----RGYVAALSLGAQG 159 (300)
Q Consensus 117 -------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~-g-----~~v~aal~lGAdg 159 (300)
.+...-+.++++.. .+||+.+||=.+ . +-...++..||.|
T Consensus 157 ~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G 233 (265)
T COG1830 157 IKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMG 233 (265)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcc
Confidence 12234556666665 699999999888 2 2245677799999
Q ss_pred EEeccccccCcccCCCHHHHHHHH
Q 022271 160 ICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 160 V~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+.+|+-..-.+ .+...-++|.
T Consensus 234 ~~~GRNifQ~~---~p~~m~~Ai~ 254 (265)
T COG1830 234 VAVGRNIFQHE---DPEAMVKAIQ 254 (265)
T ss_pred hhhhhhhhccC---ChHHHHHHHH
Confidence 99997655443 2444444443
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.23 Score=45.19 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=86.1
Q ss_pred CccceecCCCCCCCCcH-HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHH-hhcCCcEEeeeecCC-----Cc----H
Q 022271 9 FEYGIVQAPLGPDISGP-ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTR-SLTERPFGVGVVLAF-----PH----N 77 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~-~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r-~~~~~P~gvnl~~~~-----~~----~ 77 (300)
+++-+..+|+. |.-+. +....+.. | ...+.. +.-. ++... ...+.|+-+.+-... ++ .
T Consensus 29 ~DHG~~~Gp~~-gl~~~~~~~~~i~~-~-~da~~~----~~G~----~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~ 97 (264)
T PRK08227 29 FDHGYFQGPTT-GLERIDINIAPLFP-Y-ADVLMC----TRGI----LRSVVPPATNKPVVLRASGGNSILKELSNEAVA 97 (264)
T ss_pred CCCccccCCCc-cccChHHHHHHHhh-c-CCEEEe----ChhH----HHhcccccCCCcEEEEEcCCCCCCCCCCcccce
Confidence 67778888887 66543 44445554 4 322221 2222 22221 223456656554321 11 1
Q ss_pred HHHHHHHHcCCcEEEEc--CCCCc--------HHHHHHHHHCCCeEeec-------------------------------
Q 022271 78 ENIKAILSEKVAVLQVS--WGEYS--------EELVLEAHSAGVKVVPQ------------------------------- 116 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~--~G~~~--------~~~v~~~~~~G~~v~~~------------------------------- 116 (300)
..++.+++.|++.|+++ +|... .+++++++++|+.++..
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~ 177 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT 177 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec
Confidence 24777888899888753 45431 24556677888877653
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCCh-HH----HHHHHHCCCcEEEeccccccC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG----YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~----v~aal~lGAdgV~~GT~fl~t 169 (300)
.-+-.-+.+++++. .+||+.+||=... ++ +..++..||.||.+|+-..-.
T Consensus 178 ~y~~~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 178 YYVEEGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred CCCHHHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 00113456666654 7999999998853 33 445677999999999665554
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.058 Score=51.87 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=38.8
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+..++++.+ ++|||++|+| +.+.+.+++..| ||.|.+|+.|++-++
T Consensus 304 ~a~~ik~~v---~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPd 350 (391)
T PLN02411 304 LMRTLRRAY---QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPD 350 (391)
T ss_pred HHHHHHHHc---CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 335566666 7999999999 678899999998 999999999998754
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.17 Score=47.39 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHH
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMV 126 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v 126 (300)
+...+++++.++..+.|+.+|+....+. .+.++.+.+.+++.|.++.++++.+- ...|...- .....++..+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~----~~~g~~~~--~~~~eiv~~v 158 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDP----DISGAEVE--QRYLDILRAV 158 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC----CcccchHH--HHHHHHHHHH
Confidence 4445555555544578999999775442 35667777789999999988743110 00111000 1134566666
Q ss_pred HHhhCCCCCcEEEc--cCCCChHHHHHH-HHCCCcEEEecccc
Q 022271 127 VDLIGDRDIPIIAA--GGIVDARGYVAA-LSLGAQGICLGTRF 166 (300)
Q Consensus 127 ~~~~~~~~iPViaa--GGI~~g~~v~aa-l~lGAdgV~~GT~f 166 (300)
++.+ ++||++= ..+.+-.+++++ ...|||++.+-.++
T Consensus 159 ~~~~---~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 159 KSAV---TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred Hhcc---CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 6665 7898875 344455566554 56899999986664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=45.50 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHH-HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~-l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~ 94 (300)
|+++.+-+..+.++| .+|++... -+.++++ .++.++.++. ..+--|.++.+.+.++..+.+.+.+.++|.++
T Consensus 9 Git~~eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~--~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 9 GIKDSALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRK--AGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCC--CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 577777777777777 59998422 2456777 4555554432 12234677877766777888888999999999
Q ss_pred CCCCc---HHHHHHHHHCCCeEeecc-----C-------------------------------hhchHHHHHHhhCCCCC
Q 022271 95 WGEYS---EELVLEAHSAGVKVVPQD-----G-------------------------------LISLLPMVVDLIGDRDI 135 (300)
Q Consensus 95 ~G~~~---~~~v~~~~~~G~~v~~~~-----~-------------------------------~~~ll~~v~~~~~~~~i 135 (300)
|..+ .+.++.+++.++.++... . .+++++. .. .+.
T Consensus 87 -G~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~~----~~-~~~ 160 (610)
T PRK13803 87 -GAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFYN----YN-FKF 160 (610)
T ss_pred -CCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhhh----cc-cCC
Confidence 4445 677777776666555320 0 0111111 10 147
Q ss_pred cEEEccCCCChHHHHHHHHC-CCc--EEEeccccc
Q 022271 136 PIIAAGGIVDARGYVAALSL-GAQ--GICLGTRFV 167 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~l-GAd--gV~~GT~fl 167 (300)
|++.|||| +++.+..++.. ... ||=+-|.+=
T Consensus 161 p~iLAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE 194 (610)
T PRK13803 161 PFFLSGGL-SPTNFDRIINLTHPQILGIDVSSGFE 194 (610)
T ss_pred cEEEEeCC-CHHHHHHHHhhhCCCceEEEccCccc
Confidence 99999999 56689999974 555 777766553
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.29 Score=41.31 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=32.0
Q ss_pred hHHHHHHhhC-CCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 122 LLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 122 ll~~v~~~~~-~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
..|++.+.+. +.++||||+|=|.+-+++.+||..||-+|-
T Consensus 131 v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 131 VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 4455554432 247999999999999999999999999886
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.81 Score=44.70 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHH-HCCCeEeec-----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC--CcEEEeccc
Q 022271 100 EELVLEAH-SAGVKVVPQ-----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG--AQGICLGTR 165 (300)
Q Consensus 100 ~~~v~~~~-~~G~~v~~~-----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG--AdgV~~GT~ 165 (300)
+.++.++. +.|...+.. ...+..+-++.+.++. .+|||..|.|-+-+|-..-+..+ .++||+|..
T Consensus 409 ~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~-~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRG 487 (614)
T KOG2333|consen 409 HELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKS-ALPLIGNGDILSWEDWYERLNQNPNVDSVMIARG 487 (614)
T ss_pred HHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhccc-CceeEecCccccHHHHHHHhhcCCCcceEEeecc
Confidence 45666665 566554432 2367899999998752 49999999999999988888876 899999975
Q ss_pred cc
Q 022271 166 FV 167 (300)
Q Consensus 166 fl 167 (300)
-|
T Consensus 488 AL 489 (614)
T KOG2333|consen 488 AL 489 (614)
T ss_pred cc
Confidence 44
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.18 Score=44.66 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH--CCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS--LGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~--lGAdgV~~GT~fl 167 (300)
|.++++.+.+.|...+|. ...+.++.++.+. +||...|||++.+++..++. .||+-|.+||..+
T Consensus 38 P~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~-----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 38 PDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKR-----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhh-----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 456666666666655443 1235566666653 59999999999999999976 2699999999888
Q ss_pred cCc
Q 022271 168 ASE 170 (300)
Q Consensus 168 ~t~ 170 (300)
-.+
T Consensus 113 ~~p 115 (221)
T TIGR00734 113 DIT 115 (221)
T ss_pred CCH
Confidence 643
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.59 Score=38.17 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=47.5
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCCh-----HHHH
Q 022271 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDA-----RGYV 150 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g-----~~v~ 150 (300)
+...|.++|.+....|++++++.+.+.+..++.. ......++++.+.+++ .+++|++.|.+.++ ++..
T Consensus 27 lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~ 106 (137)
T PRK02261 27 LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEK 106 (137)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHH
Confidence 3345666666665556666666666655555442 1122333444443321 26888998888544 3456
Q ss_pred HHHHCCCcEEEec
Q 022271 151 AALSLGAQGICLG 163 (300)
Q Consensus 151 aal~lGAdgV~~G 163 (300)
.+..+|.|.|.-+
T Consensus 107 ~l~~~G~~~vf~~ 119 (137)
T PRK02261 107 KFKEMGFDRVFPP 119 (137)
T ss_pred HHHHcCCCEEECc
Confidence 7778998888763
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.37 Score=45.07 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--EEEEcCCCCcH--HHHHHHHHCC--CeEeec-------
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA--VLQVSWGEYSE--ELVLEAHSAG--VKVVPQ------- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~--~i~~~~G~~~~--~~v~~~~~~G--~~v~~~------- 116 (300)
.+.+.+.++-+.++. +++ +...+.+++...+.+.+.+ .+..+.|..++ +.+..+.++| ..++..
T Consensus 45 ~in~~LA~~a~~~G~-~~i--~hK~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s 121 (321)
T TIGR01306 45 IIDEKLAEQLAENGY-FYI--MHRFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS 121 (321)
T ss_pred hhhHHHHHHHHHcCC-EEE--EecCCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch
Confidence 555666665444322 222 1111333434444444332 34445565433 4555666777 355443
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
...+..+..+++.. +.|.+.+|.|.+.+++..++..|||+|.+|
T Consensus 122 ~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 122 NSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 22455677777765 688999999999999999999999999998
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.66 Score=37.81 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCC-hHHH----HH
Q 022271 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVD-ARGY----VA 151 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~-g~~v----~a 151 (300)
.++|.+++.+....|++++++.+++.+..++.. ..++..++++.+.+++ .+++|+..|++.- ..|. .+
T Consensus 26 ~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~ 105 (134)
T TIGR01501 26 TNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKR 105 (134)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHH
Confidence 345666666655555666666666666655543 2245556666666532 2566666665432 2332 35
Q ss_pred HHHCCCcEEEec
Q 022271 152 ALSLGAQGICLG 163 (300)
Q Consensus 152 al~lGAdgV~~G 163 (300)
+.++|.++|.=+
T Consensus 106 l~~~Gv~~vF~p 117 (134)
T TIGR01501 106 FKEMGFDRVFAP 117 (134)
T ss_pred HHHcCCCEEECc
Confidence 777999888754
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.9 Score=39.82 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=38.6
Q ss_pred hchHHHHHHhhCCCCCcEEEccC--CCChHHHHHHHHCCCcEEEecccccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGG--I~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.+|.++.+.+. ++|+++=|| |.+ +++.+++..|++.|-++|.+..
T Consensus 190 ~e~L~~i~~~~~--~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 190 LDHLEKLTEAVP--GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHHHHhcc--CCCEEEECCCCCCH-HHHHHHHHcCCCEEEEccHHHH
Confidence 457788888762 499999999 744 6799999999999999999886
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.91 Score=41.83 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+...+.......+.++.+++.|+++|-+.--. |++ ++++ ++.
T Consensus 182 ~i~~av~~~r~~~--~~~~kIeVEv~tleea~~a~~agaDiImLDnms-pe~-l~~a--------------------v~~ 237 (290)
T PRK06559 182 SVQKAIAQARAYA--PFVKMVEVEVESLAAAEEAAAAGADIIMLDNMS-LEQ-IEQA--------------------ITL 237 (290)
T ss_pred cHHHHHHHHHHhC--CCCCeEEEECCCHHHHHHHHHcCCCEEEECCCC-HHH-HHHH--------------------HHH
Confidence 4566777777654 333334444456778888889999999887333 333 3321 122
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+++ ++.+-++||| +.+.+.++-..|+|.+.+|..+--.
T Consensus 238 ~~~-~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 238 IAG-RSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred hcC-ceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 221 5789999999 7889999999999999999866533
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.78 Score=42.07 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++- ......+++..+++.|+++|-+.-- .| +.++++ +..+..
T Consensus 168 ~i~~av~~~r~~~~~~kIe----VEv~~leea~~a~~agaDiI~LDn~-~~-e~l~~~----------------v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVE----VEVESLEDALKAAKAGADIIMLDNM-TP-EEIREV----------------IEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcEE----EEeCCHHHHHHHHHcCcCEEEECCC-CH-HHHHHH----------------HHHHHh
Confidence 3566677776642 23332 2223567777788888888887632 23 333321 111221
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.-...++.+.++||| +.+.+.++...|+|.+.+|+.+-
T Consensus 226 ~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 226 EGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred cCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 110125889999999 99999999999999999998765
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.31 Score=45.64 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=55.6
Q ss_pred cHHHHHHHHHcCC---cEEEEcCCCCc--HHHHHHHHHCC--CeEeec-------cChhchHHHHHHhhCCCCCcEEEcc
Q 022271 76 HNENIKAILSEKV---AVLQVSWGEYS--EELVLEAHSAG--VKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 76 ~~~~~~~~~e~g~---~~i~~~~G~~~--~~~v~~~~~~G--~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaG 141 (300)
.+++.+.+..... ..+.++.|.-+ .+.++.+.++| ..++.. ...+..+..+++.. .-+.|.+|
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~---p~~~viaG 156 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAF---PEHTIMAG 156 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhC---CCCeEEEe
Confidence 3445555544222 23444556533 24455566664 665543 23566778888765 44678899
Q ss_pred CCCChHHHHHHHHCCCcEEEec
Q 022271 142 GIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 142 GI~~g~~v~aal~lGAdgV~~G 163 (300)
.|.|++++..++.+|||+|.+|
T Consensus 157 NV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 157 NVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred cccCHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999876
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.57 Score=44.98 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhc-CCcEEeeeecCCC---cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc-Chhch
Q 022271 48 PDYLRDLIRKTRSLT-ERPFGVGVVLAFP---HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD-GLISL 122 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~-~~P~gvnl~~~~~---~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~-~~~~l 122 (300)
.+...++++++++.. +.|+-++++.... +.+.++.+.+.|++.+.+++.||... -.+..|..+..+. .+-.+
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~---~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM---PERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC---CcCccchhhccCHHHHHHH
Confidence 344444555665444 6799899876333 24567777788999999999887421 1112233333321 12223
Q ss_pred HHHHHHhhCCCCCcEEE--ccCCCChHHHHH-HHHCCCcEEEeccccc
Q 022271 123 LPMVVDLIGDRDIPIIA--AGGIVDARGYVA-ALSLGAQGICLGTRFV 167 (300)
Q Consensus 123 l~~v~~~~~~~~iPVia--aGGI~~g~~v~a-al~lGAdgV~~GT~fl 167 (300)
+..|++.. ++||++ +-.+.+-..++. +...|||||.+-..+.
T Consensus 174 ~~~Vk~~~---~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 174 CGWINAKA---TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHhh---cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 34444443 688875 445666667666 5668999999976664
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.5 Score=38.82 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=58.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHH
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~a 151 (300)
....+.+.|.++|....-.+|.+++...-+..+.++.. -+-..++|++++++++ .++. +.+||+-...|..+
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~ 110 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQE 110 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHH
Confidence 34555577888887655455677777776666666553 2356788888888753 2455 57888888889888
Q ss_pred HHHCCCcEEEe
Q 022271 152 ALSLGAQGICL 162 (300)
Q Consensus 152 al~lGAdgV~~ 162 (300)
...+|.+++.-
T Consensus 111 l~~~G~~~if~ 121 (143)
T COG2185 111 LKEMGVDRIFG 121 (143)
T ss_pred HHHhCcceeeC
Confidence 88899998863
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.1 Score=41.04 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHH
Q 022271 49 DYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVV 127 (300)
Q Consensus 49 ~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~ 127 (300)
+.+.+.++++|+.. .+++-|-+ ...++++.+++.|+++|.+. +.+|+++.+.. ..+.
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv----~tleea~ea~~~GaDiI~lD-n~~~e~l~~~v-----------------~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA----DTIEQALTVLQASPDILQLD-KFTPQQLHHLH-----------------ERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCcCEEEEC-CCCHHHHHHHH-----------------HHHh
Confidence 36778888888753 34454444 35778888889999999998 44444433321 1121
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.. ..++.|-++||| +.+.+.++...|+|.+.+|..+.+
T Consensus 231 ~~--~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 231 FF--DHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred cc--CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceec
Confidence 11 126789999999 788999999999999999987654
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.29 Score=46.32 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCeEeecc-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQD-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++..+ ..+..+..+++... ++||| +|.|.|++.+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC--CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 566777888998887642 24567777777763 58877 788999999999999999999997
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=41.15 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.+.++++|+.. |+..++.....+.+.+..+++.|+++|-+.-- .|++ ++++ ++.
T Consensus 178 ~i~~av~~~r~~~--~~~~kIeVEv~slee~~ea~~~gaDiImLDn~-s~e~-l~~a--------------------v~~ 233 (281)
T PRK06543 178 DLTEALRHVRAQL--GHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF-SLDD-LREG--------------------VEL 233 (281)
T ss_pred HHHHHHHHHHHhC--CCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC-CHHH-HHHH--------------------HHH
Confidence 4777888888764 33233344444677888888999999999733 3443 3321 111
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+++ ...+-++||| |.+.+.++...|.|.+.+|..+--
T Consensus 234 ~~~-~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths 270 (281)
T PRK06543 234 VDG-RAIVEASGNV-NLNTVGAIASTGVDVISVGALTHS 270 (281)
T ss_pred hCC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 111 4579999999 778899999999999999985543
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.4 Score=37.66 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred CcEEEccCCCChH-----------HHHHHHHCCCcEEEeccccccCcc
Q 022271 135 IPIIAAGGIVDAR-----------GYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 135 iPViaaGGI~~g~-----------~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
-.+...+||. +. ....++..|||++++|+...-++.
T Consensus 169 ~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 169 DFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred ceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 3567789996 33 577889999999999998877643
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.65 Score=42.04 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC---cH----HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccCh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP---HN----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~----~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
+.+.+.++|+++++....+.-++++.... .+ ...+.+.+.|+++|=++.|--+. |. +...
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~---------gA----t~ed 179 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPV---------NA----TLEA 179 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC---------CC----CHHH
Confidence 45677788888887654234456555432 22 24567778888888776653210 00 0011
Q ss_pred hchHHHHHHhhC-CCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 120 ISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 120 ~~ll~~v~~~~~-~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
..++.+...... ..++-|=++|||.|.+++.+++.+|.+
T Consensus 180 v~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 180 ARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 222222221110 125789999999999999999998765
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.7 Score=41.86 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHHh------CCceEEecCC------------CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc---HHH
Q 022271 21 DISGPELVAAVAN------AGGLGLLRAP------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NEN 79 (300)
Q Consensus 21 g~s~~~la~avs~------aGglG~i~~~------------~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~---~~~ 79 (300)
|.+++++|.+++. +|+.=-.+|. -..+|+.+...|..+-+....|+-+++-.-... -+.
T Consensus 89 gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~l 168 (477)
T KOG2334|consen 89 GTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKL 168 (477)
T ss_pred cCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHH
Confidence 5789999998874 4432222221 135789888888888777788988887654332 456
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCC---hHHHHHHHH-C
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVD---ARGYVAALS-L 155 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~---g~~v~aal~-l 155 (300)
++.+..-|+.++.+++-.- ++--+ + ..+-..+.++.+++. .||||+.||+.+ ..|+..... .
T Consensus 169 v~ri~~tgi~ai~vh~rt~-d~r~~---~--------~~~~~~i~~i~~~~~--~V~vi~ng~~~~~e~y~Di~~~~~~~ 234 (477)
T KOG2334|consen 169 VKRICATGIAAITVHCRTR-DERNQ---E--------PATKDYIREIAQACQ--MVPVIVNGGSMDIEQYSDIEDFQEKT 234 (477)
T ss_pred HHHHHhcCCceEEEEeecc-ccCCC---C--------CCCHHHHHHHHHHhc--cceEeeccchhhHHhhhhHHHHHHHh
Confidence 7888889999998885221 10000 0 235567778888873 499999999999 777777655 6
Q ss_pred CCcEEEeccc
Q 022271 156 GAQGICLGTR 165 (300)
Q Consensus 156 GAdgV~~GT~ 165 (300)
|+++|++...
T Consensus 235 ~~~~vmiAR~ 244 (477)
T KOG2334|consen 235 GADSVMIARA 244 (477)
T ss_pred ccchhhhhHh
Confidence 9999999763
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.4 Score=35.99 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
++=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+
T Consensus 73 eeGL~iL~~vk~~~GlpvvTeV~----~~~~~~~~ae~-vDilQI 112 (281)
T PRK12457 73 DEGLRIFEEVKARFGVPVITDVH----EVEQAAPVAEV-ADVLQV 112 (281)
T ss_pred HHHHHHHHHHHHHHCCceEEEeC----CHHHHHHHhhh-CeEEee
Confidence 44556788888887777754443 45566666665 666655
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.5 Score=37.12 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcC-Cc-EEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE-RP-FGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~-~P-~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... .+ +.|- ....+.++.+++.++++|-+.-.. | +.+++ .+.++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VE----v~~~ee~~ea~~~g~d~I~lD~~~-~-~~~~~----------------~v~~l~- 122 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVE----VENLEEAEEALEAGADIIMLDNMS-P-EDLKE----------------AVEELR- 122 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEE----ESSHHHHHHHHHTT-SEEEEES-C-H-HHHHH----------------HHHHHH-
T ss_pred HHHHHHHHHHhCCCCceEEEE----cCCHHHHHHHHHhCCCEEEecCcC-H-HHHHH----------------HHHHHh-
Confidence 5566777777532 22 3332 235778888999999999987443 3 33332 122232
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .++.+.++||| |.+.+.++...|+|.+.+|+....+
T Consensus 123 ~~~-~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 123 ELN-PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp HHT-TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred hcC-CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 222 25889999999 6778999999999999999865443
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.5 Score=37.21 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=29.5
Q ss_pred chHHHHHHhhCCCCCcEEEc----cCCCC--hHHHHHHHHCCCcEEEecccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAA----GGIVD--ARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaa----GGI~~--g~~v~aal~lGAdgV~~GT~f 166 (300)
..++.+++.. +.|||.. +|+++ ..-..+|+++||||+++=+.|
T Consensus 174 ~ai~~lk~~~---~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 174 MAVPIIQQKT---DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred HHHHHHHHHh---CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4567777655 7999986 33322 134668889999999986554
|
|
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.033 Score=47.22 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=35.4
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCH
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAP 48 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~ 48 (300)
+-.++.+|++.|+|. .++.+++|.++++.||+|++.. | +++
T Consensus 42 ~~i~l~iP~vSA~MD-tVtea~mAi~ma~~GGIGVih~-n-m~~ 82 (170)
T COG0516 42 PGIGVNIPQVSAAMD-TVTEARMAIAMARDGGIGVMHG-N-MLA 82 (170)
T ss_pred CCcccCchHHHHHHH-HHHHHHHhHHHHHcCCeEEEec-c-ccH
Confidence 336788999999999 7999999999999999999986 4 344
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.53 E-value=3.7 Score=37.83 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
.++.||+.|.=. .-.+.+....+..+| +|.+-... + ...+...+.+++.+
T Consensus 7 ~l~nPi~~Asg~-~~~~~e~~~~~~~~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~ 84 (294)
T cd04741 7 TISPPLMNAAGP-WCTTLEDLLELAASS-TGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTIS 84 (294)
T ss_pred eCCCCCEECCCC-CCCCHHHHHHHHHcC-CcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHh
Confidence 367899987632 235667777777754 66552210 1 12344444455444
Q ss_pred hh---cCCcEEeeeecCCCc--HHHHHHHHHc---CCcEEEEcCCCCcHHHHHHHHHCCCeEeec--cChhchHHHHHHh
Q 022271 60 SL---TERPFGVGVVLAFPH--NENIKAILSE---KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--DGLISLLPMVVDL 129 (300)
Q Consensus 60 ~~---~~~P~gvnl~~~~~~--~~~~~~~~e~---g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~ 129 (300)
+. .++|+.+++... +. .+.++.+.+. +++.|.++.+||.. .|..-+.. .-+..++..+++.
T Consensus 85 ~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~--------~~~~~~~~~~~~~~~i~~~v~~~ 155 (294)
T cd04741 85 DGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV--------PGKPPPAYDFDATLEYLTAVKAA 155 (294)
T ss_pred hhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC--------CCcccccCCHHHHHHHHHHHHHh
Confidence 32 468999999876 32 2334555554 68999999999741 11111111 1234455556555
Q ss_pred hCCCCCcEEEccCC-CChHHHH---HHH-HC--CCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGI-VDARGYV---AAL-SL--GAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI-~~g~~v~---aal-~l--GAdgV~~GT~f 166 (300)
+ ++||++==.. .|..++. ..+ +. |+|+|.+-..+
T Consensus 156 ~---~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~ 196 (294)
T cd04741 156 Y---SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTL 196 (294)
T ss_pred c---CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccC
Confidence 5 6887753222 2333333 322 35 89999986544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.8 Score=39.76 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.+.++++|+.. |+...+.......+.++.+++.|+++|-+.--. |++ +++ .++.+
T Consensus 180 i~~ai~~~r~~~--~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s-~e~-l~~--------------------av~~~ 235 (281)
T PRK06106 180 VREAIRRARAGV--GHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT-PDT-LRE--------------------AVAIV 235 (281)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC-HHH-HHH--------------------HHHHh
Confidence 556677777654 222233333345667777888899999887332 333 332 22222
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+. ..|+-++||| |.+.+.++-..|.|.+.+|..+-
T Consensus 236 ~~-~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 236 AG-RAITEASGRI-TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CC-CceEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 21 5789999999 67889999999999999998654
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.58 Score=45.15 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 101 ELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.++.+-++|+.++.. .....++.++++... +++ +.+|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP--NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC--CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 5677778899998874 224556777766542 454 67899999999999999999999887
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.21 E-value=2.9 Score=39.50 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=81.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----------------------C-----CCHHHHHHHHHHHHhh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----------------------W-----EAPDYLRDLIRKTRSL 61 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----------------------~-----~~~~~l~~~i~~~r~~ 61 (300)
++.||+.|. + -..+.+......++| +|.+-... + .+-..++..++++++.
T Consensus 58 l~nPi~~As-G-~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~ 134 (344)
T PRK05286 58 FPNPVGLAA-G-FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA 134 (344)
T ss_pred CCCCCEECC-C-CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence 577998754 3 234567777777766 44442110 0 0011133344444433
Q ss_pred -cCCcEEeeeecCC------CcHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC
Q 022271 62 -TERPFGVGVVLAF------PHNENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG 131 (300)
Q Consensus 62 -~~~P~gvnl~~~~------~~~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~ 131 (300)
.+.|+++|+..+. ..++..+.+.+. +++.+.++++||..+ |...... .....++.+|++.++
T Consensus 135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~--------g~~~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP--------GLRDLQYGEALDELLAALKEAQA 206 (344)
T ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC--------CcccccCHHHHHHHHHHHHHHHh
Confidence 5689999997652 124444444444 489999999987321 1111111 124567777777762
Q ss_pred C--CCCcEEEccC--CC--ChHHHHHH-HHCCCcEEEeccccc
Q 022271 132 D--RDIPIIAAGG--IV--DARGYVAA-LSLGAQGICLGTRFV 167 (300)
Q Consensus 132 ~--~~iPViaaGG--I~--~g~~v~aa-l~lGAdgV~~GT~fl 167 (300)
. .++||++==. +. +-..++++ ...|||++.+-.++.
T Consensus 207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTL 249 (344)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence 0 0278876433 32 13344444 458999999977664
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.26 Score=42.66 Aligned_cols=56 Identities=25% Similarity=0.454 Sum_probs=44.7
Q ss_pred HCCCeEeec--cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 108 SAGVKVVPQ--DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 108 ~~G~~v~~~--~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
..|+.++.. .| ..+++..+.+.. .-||+.+|||.-.+++.-+..+|.+||.+||+.
T Consensus 151 ~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTal 213 (229)
T COG1411 151 DPGLIVLDIGAVGTKSGPDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVATAL 213 (229)
T ss_pred CCCeEEEEccccccccCCCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeehhhh
Confidence 357666643 22 456777777664 679999999999999999999999999999975
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.7 Score=34.51 Aligned_cols=69 Identities=25% Similarity=0.356 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC---CCCcEEEccCCCChHHHH
Q 022271 74 FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 74 ~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~ 150 (300)
.|.++.++.+.+.++++|.+++-. .. ....++++.+.+++ .++++++.|.+ -.++..
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~--~~-----------------~~~~~~~~~~~L~~~~~~~i~i~~GG~~-~~~~~~ 96 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLS--GG-----------------HMTLFPEVIELLRELGAGDILVVGGGII-PPEDYE 96 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccc--hh-----------------hHHHHHHHHHHHHhcCCCCCEEEEECCC-CHHHHH
Confidence 344566666666666666665422 11 12223333333321 14665555554 456788
Q ss_pred HHHHCCCcEEEe
Q 022271 151 AALSLGAQGICL 162 (300)
Q Consensus 151 aal~lGAdgV~~ 162 (300)
.+.++|.|++.=
T Consensus 97 ~~~~~G~d~~~~ 108 (122)
T cd02071 97 LLKEMGVAEIFG 108 (122)
T ss_pred HHHHCCCCEEEC
Confidence 889999987653
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.1 Score=41.30 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred HHHHHHhhc-CCcEEeeeecC-CCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHH
Q 022271 54 LIRKTRSLT-ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVD 128 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~-~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~ 128 (300)
.++++++.. +.|+.++++.. .+. .+.++.+.+.+++.|.++++||.. .. .+..|..+..+ .-+..++..+++
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~--~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MP--ERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CC--CCCCchhhccCHHHHHHHHHHHHH
Confidence 344444433 57888888876 332 344566666789999999999743 11 12334444332 123445555655
Q ss_pred hhCCCCCcEEEccCC--CChHHHHH-HHHCCCcEEEecccccc
Q 022271 129 LIGDRDIPIIAAGGI--VDARGYVA-ALSLGAQGICLGTRFVA 168 (300)
Q Consensus 129 ~~~~~~iPViaaGGI--~~g~~v~a-al~lGAdgV~~GT~fl~ 168 (300)
.+ ++||++=-.. .+-.+++. +...|||+|.+-..+..
T Consensus 166 ~~---~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 166 AV---KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred hc---CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 54 6888775332 23334444 56689999998776654
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.52 Score=46.64 Aligned_cols=55 Identities=15% Similarity=0.360 Sum_probs=50.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
+++.+++++||+++||. ++|..+|+.+|+++|++|+|+. + +++++..++++++++
T Consensus 34 l~~~~~~~~Piv~a~m~-~vT~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~vk~ 88 (486)
T PRK05567 34 LTKNIRLNIPLLSAAMD-TVTEARMAIAMAREGGIGVIHK-N-MSIEEQAEEVRKVKR 88 (486)
T ss_pred hhhhcCcCcCEEeCCCC-CcCHHHHHHHHHhCCCCCEecC-C-CCHHHHHHHHHHhhh
Confidence 67899999999999999 7999999999999999999986 4 589999999998875
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=9.3 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=41.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.+|.++.+.+ ++|++.=||-+.+ +++.++..+|..-|-++|-+-..
T Consensus 191 ~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 239 (285)
T PRK07709 191 GFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIE 239 (285)
T ss_pred CHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 356788888887 8999999999988 67889999999999999987554
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=91.26 E-value=9.4 Score=35.10 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 188 df~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~ 245 (282)
T TIGR01858 188 DFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIA----FSGAVKAYF 245 (282)
T ss_pred CHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467889998888 89999999888775 5778999999999999988765 234455554
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.58 Score=46.20 Aligned_cols=150 Identities=25% Similarity=0.302 Sum_probs=99.2
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh---cCCcEE-----------------
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL---TERPFG----------------- 67 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~---~~~P~g----------------- 67 (300)
+++.||+.+||. .++..+||.++++.||+|+|.. | +++++..+++++++.. ...|+-
T Consensus 41 ~l~~P~vsa~md-tvTe~~MAi~~A~~GGigvIh~-n-~~i~~qae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~ 117 (475)
T TIGR01303 41 GTTIPLVVANMT-AVAGRRMAETVARRGGIVILPQ-D-LPIPAVKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR 117 (475)
T ss_pred ccccceeeccch-hhHHHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhc
Confidence 468899999999 8999999999999999999997 4 5787777777666432 011110
Q ss_pred -------------eeeecC--------------------------CCcHHHHHHHHHcCCcEEE-Ec-CC----------
Q 022271 68 -------------VGVVLA--------------------------FPHNENIKAILSEKVAVLQ-VS-WG---------- 96 (300)
Q Consensus 68 -------------vnl~~~--------------------------~~~~~~~~~~~e~g~~~i~-~~-~G---------- 96 (300)
++++.. .+..+.++.+.+.+...+- +. -|
T Consensus 118 ~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~D 197 (475)
T TIGR01303 118 AHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTG 197 (475)
T ss_pred CCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 011100 0013455666666654321 11 00
Q ss_pred ------C--------------------CcHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCC
Q 022271 97 ------E--------------------YSEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 97 ------~--------------------~~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
. ...+.+..+.++|+.++.. .....++.++++.. .++|||+ |.+
T Consensus 198 Ll~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~ 274 (475)
T TIGR01303 198 ALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNV 274 (475)
T ss_pred HHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-ecc
Confidence 0 0135556666778777654 22456777777754 2799998 779
Q ss_pred CChHHHHHHHHCCCcEEEec
Q 022271 144 VDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~G 163 (300)
.|.+++..++.+|||+|-+|
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CCHHHHHHHHHhCCCEEEEC
Confidence 99999999999999998853
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.4 Score=40.83 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=62.0
Q ss_pred HHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHH------cCCcEEEEcCCC-CcHHHHHHHHHCCCeEeeccChhch
Q 022271 51 LRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS------EKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQDGLISL 122 (300)
Q Consensus 51 l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e------~g~~~i~~~~G~-~~~~~v~~~~~~G~~v~~~~~~~~l 122 (300)
+.+.++++|+. -..++...+.....+.+.+..+++ .|+++|-+.-.. +|.+ + ......
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~-~-------------~~~~e~ 251 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-G-------------DVDVSM 251 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc-c-------------CCCHHH
Confidence 44556666662 223343444444445677777778 888888876331 1111 0 012222
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.+.++.++. ..|+-++||| +.+.+.++-..|.|.+.+|..+-
T Consensus 252 l~~av~~~~~-~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 252 LKEAVELING-RFETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred HHHHHHhhCC-CceEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 3333333322 5789999999 68889999999999999997554
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.61 Score=46.39 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec--cccccCc
Q 022271 101 ELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG--TRFVASE 170 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G--T~fl~t~ 170 (300)
+-++.+.++|+.++..+. .+..+.++++... ++ .|.+|+|.|.+++..++.+|||+|.+| +...++.
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p--~~-~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t 326 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP--EL-DVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTT 326 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC--CC-cEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccC
Confidence 556666778888876421 3467777777541 33 566899999999999999999999876 5544443
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.14 E-value=3.6 Score=37.32 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=30.3
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHH------HHHHHHCCCcEEEe
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARG------YVAALSLGAQGICL 162 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~------v~aal~lGAdgV~~ 162 (300)
++.+|-+++.. ..|||+.=-=.+|+. +.++++.||||+++
T Consensus 203 i~aV~~~kq~T---HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmi 248 (286)
T COG2876 203 ISAVPILKQET---HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMI 248 (286)
T ss_pred hHHHHHHHhhc---CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEE
Confidence 45677777775 799999765555554 45788999999997
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=91.12 E-value=9.5 Score=35.19 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=47.1
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.+.++.++.+.+ ++|++.=||=+.+ +++.++...|..-|-++|-+... .....|+.+.
T Consensus 194 d~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~~ 252 (288)
T TIGR00167 194 DFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA----FAAAVRNYYA 252 (288)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH----HHHHHHHHHH
Confidence 456888898888 8999999999998 57889999999999999988665 3445555553
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.11 E-value=12 Score=34.39 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=44.7
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+..+ .....|+.+
T Consensus 190 dfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a----~~~~~~~~~ 247 (286)
T PRK12738 190 DFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA----FAGAVKAWF 247 (286)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467889998887 89999999887764 5778999999999999988665 234445544
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=91.05 E-value=10 Score=33.20 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=78.3
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCC-cHHHHHHHHHC
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA 109 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~-~~~~v~~~~~~ 109 (300)
.+.+-+.++-. .++++..+..+.+.+..=+ .+=+....+. .+.++.+.+..++ +.+..|.. ..+-++.+.++
T Consensus 6 ~~~~liaVlr~---~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 6 REAKIVPVIRI---DDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred hhCCEEEEEec---CCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHc
Confidence 44555555543 3666655555555442111 1222223232 3445555554445 33443432 34556667778
Q ss_pred CCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 110 GVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 110 G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
|...+...+ +-+++.+..++.++|++. |+.|+.++..|+.+||+.|=+ +.-++..-+.|-+.|..
T Consensus 80 GA~FivsP~---~~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~vKl-----FPA~~~GG~~yikal~~ 144 (204)
T TIGR01182 80 GAQFIVSPG---LTPELAKHAQDHGIPIIP--GVATPSEIMLALELGITALKL-----FPAEVSGGVKMLKALAG 144 (204)
T ss_pred CCCEEECCC---CCHHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEEEE-----CCchhcCCHHHHHHHhc
Confidence 877775433 345666555444788888 999999999999999998876 33232222556555554
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.03 E-value=11 Score=34.80 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHH-HHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARG-YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++|++.=||=+.+.+ +.+++.+|..-|-++|-+...
T Consensus 190 d~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a 238 (284)
T PRK12737 190 DFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIA 238 (284)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHH
Confidence 456799998887 899999999887765 778999999999999987654
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.2 Score=37.65 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=81.6
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC---------C-------------C-----CCHHHHHHHHHHHHh-
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------D-------------W-----EAPDYLRDLIRKTRS- 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~-------------~-----~~~~~l~~~i~~~r~- 60 (300)
++.||+.|. + ...+.+.......+ |+|++-.+ + + .+...++..++++++
T Consensus 55 l~NPi~lAs-G-~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 55 FPNPLGLAA-G-FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCCcEeCC-c-cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhc
Confidence 577998743 2 23456677777777 46665221 1 0 011224444555543
Q ss_pred hcCCcEEeeeecCC------CcHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC
Q 022271 61 LTERPFGVGVVLAF------PHNENIKAILSEK--VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG 131 (300)
Q Consensus 61 ~~~~P~gvnl~~~~------~~~~~~~~~~e~g--~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~ 131 (300)
..+.|++||+..+. ..+++.+.+.+.+ ++.+.++..||... |...... ..+..++..|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~--------~~~~~~~~~~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP--------GLRDLQYKAELRDLLTAVKQEQD 203 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC--------CcccccCHHHHHHHHHHHHHHHH
Confidence 24579999986552 1245555555444 89999988776311 2111111 124455666666552
Q ss_pred C----CCCcEEEccC--CC--ChHHHHH-HHHCCCcEEEeccccc
Q 022271 132 D----RDIPIIAAGG--IV--DARGYVA-ALSLGAQGICLGTRFV 167 (300)
Q Consensus 132 ~----~~iPViaaGG--I~--~g~~v~a-al~lGAdgV~~GT~fl 167 (300)
. .++||++==. +. +-.++++ +...|||||.+-..+.
T Consensus 204 ~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 204 GLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred hhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 0 1288876433 33 3445554 5568999999987764
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=3.5 Score=37.75 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
++=-+.++++|+.++.|+--.++ +.++++.+.+. +|++.+
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~----~~~q~~~vae~-~DilQI 112 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVH----ESSQCEAVGKV-ADIIQI 112 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeC----CHHHHHHHHhh-CcEEee
Confidence 34446788888888777754444 45566666665 566655
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=13 Score=34.12 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=44.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++++.+ ++|+++=||+..+ +++.++..+|..-|-++|-+..+ .....|+.+
T Consensus 186 ~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a----~~~~~~~~~ 243 (283)
T PRK08185 186 QMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA----FFKKVREIL 243 (283)
T ss_pred CHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH----HHHHHHHHH
Confidence 466788888877 8999999999766 55778999999999999987665 234455544
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=90.47 E-value=8.4 Score=36.71 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred hchHHHHHHhhCCCCCcEEE-ccCCCC---h--HHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 120 ISLLPMVVDLIGDRDIPIIA-AGGIVD---A--RGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPVia-aGGI~~---g--~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
+..++.+++.. ++||+. ..-... - .-..+|.++||||+++=+.| .++...+
T Consensus 276 l~~i~~lk~~~---~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~a~~ 332 (360)
T PRK12595 276 ISAVPILKQET---HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAVALS 332 (360)
T ss_pred HHHHHHHHHHh---CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCCCCC
Confidence 45677777765 799999 433322 1 13456789999999998888 5444333
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.97 Score=42.38 Aligned_cols=61 Identities=28% Similarity=0.474 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCeEeecc---C----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQD---G----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~---~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+-++|+.++... + ...++.++++... ++||++ |.+.+.+++..++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 355666678898876531 1 2445666666541 488877 99999999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=90.40 E-value=13 Score=34.10 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=41.7
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++...|..-|-++|.+...
T Consensus 184 ~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 184 DFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 356888898888 89999999999984 5899999999999999988655
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=90.30 E-value=7.9 Score=33.09 Aligned_cols=109 Identities=26% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHHHHHHcCCcEEEEcCCCCc-HHHHHHHHHCCCeEeeccChhchH
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGEYS-EELVLEAHSAGVKVVPQDGLISLL 123 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~G~~~-~~~v~~~~~~G~~v~~~~~~~~ll 123 (300)
.+++.+.+.++.+.+..=+ .+-+....+ ..+.++.+.+.-+++. +..|... .+-++.+.+.|...++..+..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~--- 86 (190)
T cd00452 13 DDAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLD--- 86 (190)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCC---
Confidence 3566665555555442111 122222222 2345555555444332 2223322 556677777777766643322
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+++.++.+..++|++. |+.|.+++..++.+|||.+.+
T Consensus 87 ~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 87 PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 2333332222678776 888999999999999999997
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.9 Score=32.73 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHH
Q 022271 73 AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 73 ~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aa 152 (300)
..|.++.++.+.+.++++|.+++-... .... ...++.++++... .+++|+.+|...+. .-..+
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~~--~~~~-------------~~~~i~~l~~~~~-~~~~i~vGG~~~~~-~~~~~ 98 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLTT--HMTL-------------MKEVIEELKEAGL-DDIPVLVGGAIVTR-DFKFL 98 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccc--cHHH-------------HHHHHHHHHHcCC-CCCeEEEECCCCCh-hHHHH
Confidence 334566677777777777777643211 1111 1233444444321 16888888887775 33567
Q ss_pred HHCCCcEEEe
Q 022271 153 LSLGAQGICL 162 (300)
Q Consensus 153 l~lGAdgV~~ 162 (300)
..+|+|++.-
T Consensus 99 ~~~G~D~~~~ 108 (119)
T cd02067 99 KEIGVDAYFG 108 (119)
T ss_pred HHcCCeEEEC
Confidence 8899998764
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.18 E-value=14 Score=34.10 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=45.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 190 d~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~~ 247 (284)
T PRK09195 190 DFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIA----FSQALKNYL 247 (284)
T ss_pred CHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467888998887 89999999887764 5778999999999999988755 345555555
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.14 E-value=14 Score=34.15 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.++.++.+.+ ++|++.=||=+.+ +++.+++.+|..-|-++|-+-..
T Consensus 191 d~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a 239 (286)
T PRK08610 191 GFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIA 239 (286)
T ss_pred CHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHH
Confidence 367888898887 8999999999988 67888999999999999987655
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=4.9 Score=37.07 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++-|= ....+.+..+++.|+++|-+.- ..|++ +++. ++.+..
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVE----v~tl~ea~eal~~gaDiI~LDn-m~~e~-vk~a----------------v~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVE----VDSLEQLDEVLAEGAELVLLDN-FPVWQ-TQEA----------------VQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEE----cCCHHHHHHHHHcCCCEEEeCC-CCHHH-HHHH----------------HHHHhc
Confidence 3456677777642 3444332 2345677777889999998873 22333 3321 111111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
. . .++.+.++||| |.+.+.++-..|+|.+.+|+.+--
T Consensus 243 ~-~-~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 243 R-A-PTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred c-C-CCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcC
Confidence 1 1 26889999999 788999999999999999986653
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=90.07 E-value=2.3 Score=41.16 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=63.6
Q ss_pred HHHHHhhc-CCcEEeeeecC-CCc--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHh
Q 022271 55 IRKTRSLT-ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDL 129 (300)
Q Consensus 55 i~~~r~~~-~~P~gvnl~~~-~~~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~ 129 (300)
++++++.. +.|+.+++... .+. .+.++.+.+.+++.|.++.++|. .+. .+..|..+..+ ..+..++..+++.
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~--~~~~g~~~~~~~~~~~~i~~~v~~~ 166 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMS--ERGMGSAVGQVPELVEMYTRWVKRG 166 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-Ccc--ccCCcccccCCHHHHHHHHHHHHhc
Confidence 33443333 57888888876 332 45666777789999999999975 211 12344444432 1234455555555
Q ss_pred hCCCCCcEEE--ccCCCChHHHHH-HHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIA--AGGIVDARGYVA-ALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPVia--aGGI~~g~~v~a-al~lGAdgV~~GT~f 166 (300)
+ ++||++ .-.+.+-..++. +...||||+.+=..+
T Consensus 167 ~---~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (420)
T PRK08318 167 S---RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTI 203 (420)
T ss_pred c---CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEeccc
Confidence 4 678775 334455556665 456899999964444
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.03 E-value=12 Score=34.82 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=98.7
Q ss_pred ccccC--CccceecCCCCC----CCCcH--HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 4 RGMLG--FEYGIVQAPLGP----DISGP--ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 4 ~~~lg--~~~Pii~apM~~----g~s~~--~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
+..|| +..||..||-++ .. +. .-|.|.+.+|..-+++.-...++|++ .+. ....-...+|.....
T Consensus 60 TtvlG~~i~~Pi~iapTa~qkma~p-dGE~~taraa~~~~~~~i~Ss~at~S~EdI----~~a--ap~~~rwfQLYvykd 132 (363)
T KOG0538|consen 60 TTVLGQKISAPIMIAPTAMQKMAHP-DGELATARAAQAAGTIMILSSWATCSVEDI----ASA--APPGIRWFQLYVYKD 132 (363)
T ss_pred ceeccccccceeEEcchHHHhccCC-cccHHHHHHHHhcCCcEEEechhcCCHHHH----Hhh--CCCCcEEEEEEecCc
Confidence 34566 677999998531 12 22 44566677787666654222355433 222 112223345554432
Q ss_pred ---cHHHHHHHHHcCCcEEEEcCCCC-----cHHHHHHHHH------C------CCeEee------------c-cC--hh
Q 022271 76 ---HNENIKAILSEKVAVLQVSWGEY-----SEELVLEAHS------A------GVKVVP------------Q-DG--LI 120 (300)
Q Consensus 76 ---~~~~~~~~~e~g~~~i~~~~G~~-----~~~~v~~~~~------~------G~~v~~------------~-~~--~~ 120 (300)
.++.++.+.+.|.+++.+....| ..++-..+.. . ...+.. + .+ .+
T Consensus 133 r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W 212 (363)
T KOG0538|consen 133 RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSW 212 (363)
T ss_pred hHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCCh
Confidence 25678888899999887654332 1111111100 0 000000 0 01 12
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe---ccccccCcccCCCHHHHHHHHcCCCcceEEEec
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL---GTRFVASEESYAHPEYKRKLVEMDKTEYTDVFG 195 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~---GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~ 195 (300)
.=++-++... +.||++= ||-+++|+..|...|++|+.+ |-|=+ .+.+++-..-..++++-+.-+.+.++
T Consensus 213 ~Di~wLr~~T---~LPIvvK-Gilt~eDA~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V~lD 284 (363)
T KOG0538|consen 213 KDIKWLRSIT---KLPIVVK-GVLTGEDARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPVFLD 284 (363)
T ss_pred hhhHHHHhcC---cCCeEEE-eecccHHHHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEEEEe
Confidence 2234444443 7898765 689999999999999999999 44544 34566766777777764443444443
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=89.65 E-value=8.9 Score=34.75 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=32.7
Q ss_pred hchHHHHHHhhCCCCCcEEE-ccCCCC-----hHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPVia-aGGI~~-----g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+..++.+++.. ++||+. ++-... ..-..+|.++||+|+++=+.|-..
T Consensus 183 l~~i~~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 183 LSAVPVLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred HHHHHHHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 45667777665 799999 454443 344558889999999887665443
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.8 Score=38.36 Aligned_cols=65 Identities=23% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHHHCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal~lG 156 (300)
+.++.+.+.|++++.+++-.| ..+..+.++++..+. .+=-++.+|-|.|.+++.+++.+|
T Consensus 31 ~~~~al~~gGi~~iEiT~~tp-------------------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aG 91 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNRGD-------------------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLG 91 (222)
T ss_pred HHHHHHHHCCCCEEEEeCCCC-------------------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcC
Confidence 345666666777776666443 122333344332211 011379999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 92 A~FiV 96 (222)
T PRK07114 92 ANFIV 96 (222)
T ss_pred CCEEE
Confidence 98655
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.4 Score=38.26 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++++.+++-.| ..+..+.++++... + -++.+|.|.|.+++..++.+|
T Consensus 23 ~~~~~al~~gGi~~iEiT~~t~-------------------~a~~~I~~l~~~~p--~-~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 23 VPIAEALIEGGIRAIEITLRTP-------------------NALEAIEALRKEFP--D-LLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp HHHHHHHHHTT--EEEEETTST-------------------THHHHHHHHHHHHT--T-SEEEEES--SHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEecCCc-------------------cHHHHHHHHHHHCC--C-CeeEEEeccCHHHHHHHHHcC
Confidence 3455666666666666665442 23345555666652 3 479999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 81 A~Fiv 85 (196)
T PF01081_consen 81 AQFIV 85 (196)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 98665
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.27 E-value=4.3 Score=37.57 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE-ccCCCChHHHH---HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGYV---AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia-aGGI~~g~~v~---aa 152 (300)
.+.++.+++.|++.|... |.- .+..-.-+ .--..++..+++.+++ ++|||+ .|+..+.+.+. .+
T Consensus 28 ~~lv~~li~~Gv~gi~~~-Gtt-GE~~~Ls~---------eEr~~v~~~~v~~~~g-rvpviaG~g~~~t~eai~lak~a 95 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVL-GTT-GESPTLTL---------EERKEVLEAVVEAVGG-RVPVIAGVGSNSTAEAIELAKHA 95 (299)
T ss_pred HHHHHHHHHcCCCEEEEC-CCC-ccchhcCH---------HHHHHHHHHHHHHHCC-CCcEEEecCCCcHHHHHHHHHHH
Confidence 456778888888888765 321 11000000 0012455667777653 689888 55555555544 44
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+||||+++=++|..-.--..--.|=++|.++.+.. ..++.. |++.+.-+..+++.++.
T Consensus 96 ~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lP-vilYN~---P~~tg~~l~~e~i~~la 155 (299)
T COG0329 96 EKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLP-VILYNI---PSRTGVDLSPETIARLA 155 (299)
T ss_pred HhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCC-EEEEeC---ccccCCCCCHHHHHHHh
Confidence 5699999999999998643222333444455554554 235531 44444445545554443
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.5 Score=38.31 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+.++.+.+.|+++|.+.+..| ..+..+.++++.. +--+|.+|-|.|.+++..++.+||
T Consensus 20 ~ia~al~~gGi~~iEit~~tp-------------------~a~~~I~~l~~~~---~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTP-------------------AALDAIRAVAAEV---EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCc-------------------cHHHHHHHHHHHC---CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 345566666666666665442 2344455555554 225799999999999999999998
Q ss_pred cEEE
Q 022271 158 QGIC 161 (300)
Q Consensus 158 dgV~ 161 (300)
+.++
T Consensus 78 ~Fiv 81 (201)
T PRK06015 78 RFIV 81 (201)
T ss_pred CEEE
Confidence 8654
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=7.3 Score=35.31 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEE
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~ 93 (300)
+=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+
T Consensus 68 eGL~~L~~vk~~~GlpvvTeV~----~~~~~~~v~~~-~DilQI 106 (264)
T PRK05198 68 EGLKILQEVKETFGVPVLTDVH----EPEQAAPVAEV-VDVLQI 106 (264)
T ss_pred HHHHHHHHHHHHHCCceEEEeC----CHHHHHHHHhh-CcEEEE
Confidence 3346788888887777755444 45566666665 666655
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=89.09 E-value=8.9 Score=33.61 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred hchHHHHHHhhCCCC-CcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 120 ISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~-iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+.++.++.+.++..+ ..=|.+.|+.+..++..++.+|||.|-+.-
T Consensus 141 ~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 141 MELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 456666666553223 335667789999999999999999998853
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=19 Score=33.60 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChH----------------------HHHHHHHCCCcEEEeccccccCcccCCCHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDAR----------------------GYVAALSLGAQGICLGTRFVASEESYAHPE 177 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~----------------------~v~aal~lGAdgV~~GT~fl~t~Es~~~~~ 177 (300)
+.+|.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+..+ ....
T Consensus 193 f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a----~~~~ 265 (307)
T PRK05835 193 FERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIA----FIAE 265 (307)
T ss_pred HHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHH----HHHH
Confidence 56788888887 89999999999887 7888899999999998877655 2344
Q ss_pred HHHHH
Q 022271 178 YKRKL 182 (300)
Q Consensus 178 ~k~~i 182 (300)
.|+.+
T Consensus 266 ~~~~~ 270 (307)
T PRK05835 266 VRKVA 270 (307)
T ss_pred HHHHH
Confidence 55544
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=89.01 E-value=8.1 Score=34.93 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEc
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~ 94 (300)
+=-+.++++|+.++.|+---++ +.++++.+.+. +|++.+.
T Consensus 60 eGL~iL~~vk~~~glpvvTeV~----~~~~~~~vae~-vDilQIg 99 (258)
T TIGR01362 60 EGLKILQKVKEEFGVPILTDVH----ESSQCEPVAEV-VDIIQIP 99 (258)
T ss_pred HHHHHHHHHHHHhCCceEEEeC----CHHHHHHHHhh-CcEEEeC
Confidence 3446788888888777755444 45666666666 7777653
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins | Back alignment and domain information |
|---|
Probab=88.64 E-value=3 Score=36.16 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=52.6
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC--C--CCcEEEccCCCChHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD--R--DIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~--~--~iPViaaGGI~~g~~v~aa 152 (300)
..+...|.+++.+....|++++++.+++.+..++.. ...+..+.++.+.++. . +++|++.|...+.+ -+
T Consensus 104 ~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~ 180 (201)
T cd02070 104 TMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE---FA 180 (201)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH---HH
Confidence 344568999988877788889999998888777653 1223333444443321 2 68999999988864 34
Q ss_pred HHCCCcEEE
Q 022271 153 LSLGAQGIC 161 (300)
Q Consensus 153 l~lGAdgV~ 161 (300)
-.+|||+..
T Consensus 181 ~~~GaD~~~ 189 (201)
T cd02070 181 DEIGADGYA 189 (201)
T ss_pred HHcCCcEEE
Confidence 456999764
|
A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=6.5 Score=36.36 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+.+.++++|+... + ..+-....+.++++.+++.|+++|-+.-. .|++ ++++ ++.+
T Consensus 192 i~~av~~~r~~~~-~--~kIeVEvetleea~eA~~aGaDiImLDnm-spe~-l~~a--------------------v~~~ 246 (294)
T PRK06978 192 VGAALDAAFALNA-G--VPVQIEVETLAQLETALAHGAQSVLLDNF-TLDM-MREA--------------------VRVT 246 (294)
T ss_pred HHHHHHHHHHhCC-C--CcEEEEcCCHHHHHHHHHcCCCEEEECCC-CHHH-HHHH--------------------HHhh
Confidence 4455666665422 1 12233334567788888899999988733 3333 3321 1112
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+. ++.+-++||| +.+-+.++-..|.|.+.+|..+--
T Consensus 247 ~~-~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galths 282 (294)
T PRK06978 247 AG-RAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKD 282 (294)
T ss_pred cC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence 11 5789999999 688899999999999999975543
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.3 Score=36.26 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
.+.+.++++|+.. .+++-|-+ ...++++.+++.|+++|.+.- ..|+ .++++. .+ +..
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv----~tleqa~ea~~agaDiI~LDn-~~~e-~l~~av-------------~~---~~~ 232 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEA----DTPKEAIAALRAQPDVLQLDK-FSPQ-QATEIA-------------QI---APS 232 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCCCEEEECC-CCHH-HHHHHH-------------HH---hhc
Confidence 5667788887753 23343333 467888888999999999963 2233 343321 11 111
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. ..++.+-++||| +.+.+.++-..|+|.+.+|..+
T Consensus 233 ~--~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 233 L--APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred c--CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 1 126789999999 7889999999999999998753
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.26 E-value=20 Score=32.67 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=73.6
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhcC--CcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-....|.=|++.+|. .++.++-.+.++.+.+..+ .|+-+++..... ..+..+.+.+.|++.|.+..
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5555556678767664321 3677777777777766532 455555433211 12345555666776665421
Q ss_pred --CCC-cHHHHHHHH----HCCCeEeec------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 --GEY-SEELVLEAH----SAGVKVVPQ------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 --G~~-~~~~v~~~~----~~G~~v~~~------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
..+ ++++++..+ ..+..++.. .+.+..+.++.+... .+..|+
T Consensus 103 ~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~-~~~~v~ 181 (285)
T TIGR00674 103 YYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAP-DDFVVL 181 (285)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcC-CCeEEE
Confidence 111 122222211 123333211 123444555554432 134444
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+ +...+...+.+|++|.+.|+..+..++
T Consensus 182 ~G----~d~~~~~~~~~G~~G~i~~~~~~~P~~ 210 (285)
T TIGR00674 182 SG----DDALTLPMMALGGKGVISVTANVAPKL 210 (285)
T ss_pred EC----chHHHHHHHHcCCCEEEehHHHhhHHH
Confidence 43 224567788999999999988876654
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=12 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCcEEEccCCCChH-----HHHHH---HHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIVDAR-----GYVAA---LSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~~g~-----~v~aa---l~lGAdgV~~GT~fl~t 169 (300)
.+||+.+||=.... .+..+ +..||.|+.+|+-..-.
T Consensus 281 ~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~ 324 (348)
T PRK09250 281 RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQR 324 (348)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcC
Confidence 58999999988542 25567 88999999999654433
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=88.06 E-value=4.5 Score=37.26 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~aa 152 (300)
..+++.+++.|++.+.+. |... +... +...--..++..+++.+++ ++||++.=|-.+-++. ..+
T Consensus 24 ~~lv~~~~~~Gv~gi~v~-GstG-E~~~---------Ls~~Er~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A 91 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVG-GTSG-EPGS---------LTLEERKQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFA 91 (294)
T ss_pred HHHHHHHHHcCCCEEEEC-ccCc-cccc---------CCHHHHHHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHH
Confidence 456778888888888765 3211 1000 0000023455566666643 6999977666566554 355
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhh
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNW 215 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~ 215 (300)
.++|||+|++.+++........--.|=+.|.++. +.. ..++. .|+..+..+....+.++
T Consensus 92 ~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lp-v~iYn---~P~~tg~~l~~~~l~~L 151 (294)
T TIGR02313 92 EEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFP-IIIYN---IPGRAAQEIAPKTMARL 151 (294)
T ss_pred HHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCC-EEEEe---CchhcCcCCCHHHHHHH
Confidence 6699999999999887643222233444455554 433 23443 24444444555555554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.66 E-value=5.9 Score=36.91 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=78.7
Q ss_pred cccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------CC-------------------CHHHHHHHH
Q 022271 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WE-------------------APDYLRDLI 55 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~-------------------~~~~l~~~i 55 (300)
+++| .+.|++.|.=. -..+.+...+..+-| +|++-.+. .. +-..++..+
T Consensus 5 ~~~Gl~f~NPl~lAaG~-~~~~~~~~~~~~~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 5 EILGLKFPNPLGLAAGF-DGKNGEELDALAALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred eecceecCCCCeEcccC-CccCHHHHHHHHhcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 4555 46688875421 124667777778777 77763211 00 111233444
Q ss_pred HHHHhhc--CCcEEeeeecCC----C--cHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHH
Q 022271 56 RKTRSLT--ERPFGVGVVLAF----P--HNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPM 125 (300)
Q Consensus 56 ~~~r~~~--~~P~gvnl~~~~----~--~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~ 125 (300)
++++... ..|+++|+..+. . ..+.+..+.+.+ ++.+.++..||..+--..+ ... +.+-.++.+
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l-------~~~~e~l~~l~~~ 155 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRAL-------GQDPELLEKLLEA 155 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhh-------ccCHHHHHHHHHH
Confidence 4443321 225666665442 1 245666667777 8999998888731111111 000 123344445
Q ss_pred HHHhhCCCCCcEEEccC--CCChHHHHHH-HHCCCcEEEec
Q 022271 126 VVDLIGDRDIPIIAAGG--IVDARGYVAA-LSLGAQGICLG 163 (300)
Q Consensus 126 v~~~~~~~~iPViaaGG--I~~g~~v~aa-l~lGAdgV~~G 163 (300)
|++.. ++||++==. +.+-.+++++ ...|+||+.+=
T Consensus 156 vk~~~---~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 156 VKAAT---KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAI 193 (310)
T ss_pred HHhcc---cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 55554 688876433 5555555544 45899999874
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.57 E-value=8.7 Score=37.24 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=55.1
Q ss_pred cEEeeeecCCC----cHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhC------
Q 022271 65 PFGVGVVLAFP----HNENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIG------ 131 (300)
Q Consensus 65 P~gvnl~~~~~----~~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~------ 131 (300)
|+|||+-.+.. .+++++.+... .++.+.++.-+|.-+ |...... ..+..++.+|++..+
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp--------glr~lq~~~~l~~ll~~V~~~~~~~~~~~ 259 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP--------GLRKLQGRKQLKDLLKKVLAARDEMQWGE 259 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC--------CcccccChHHHHHHHHHHHHHHHHhhhcc
Confidence 89999966532 23444444333 389999988776311 2221111 224455555554321
Q ss_pred CCCCcEEEccC-CCChHH---HH-HHHHCCCcEEEecccccc
Q 022271 132 DRDIPIIAAGG-IVDARG---YV-AALSLGAQGICLGTRFVA 168 (300)
Q Consensus 132 ~~~iPViaaGG-I~~g~~---v~-aal~lGAdgV~~GT~fl~ 168 (300)
..++||++=.. ..+.++ ++ .+...|+|||.+-..++.
T Consensus 260 ~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~ 301 (409)
T PLN02826 260 EGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTIS 301 (409)
T ss_pred ccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc
Confidence 12689999774 233334 33 467799999999876653
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.56 E-value=7.2 Score=36.10 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+++-| .....+.++.+++.|+++|-+.--. |+ .++++ ++.
T Consensus 195 i~~av~~~r~~~~~~kIeV----Ev~sleea~ea~~~gaDiI~LDn~s-~e-~~~~a--------------------v~~ 248 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV----EVENLDELDQALKAGADIIMLDNFT-TE-QMREA--------------------VKR 248 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE----EeCCHHHHHHHHHcCCCEEEeCCCC-hH-HHHHH--------------------HHh
Confidence 556666666542 233332 2234677888888899999887332 33 33322 111
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++. ++.+-++||| |.+.+.++-..|+|.+.+|..+-
T Consensus 249 ~~~-~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 249 TNG-RALLEVSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred hcC-CeEEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 221 6789999999 67889999999999999997543
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=3.1 Score=39.16 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHcC---CcEEEEcCCCCcH--HHHHHHHH--CCCeEeec-------cChhchHHHHHHhhCCCCCcEEEc
Q 022271 75 PHNENIKAILSEK---VAVLQVSWGEYSE--ELVLEAHS--AGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAA 140 (300)
Q Consensus 75 ~~~~~~~~~~e~g---~~~i~~~~G~~~~--~~v~~~~~--~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaa 140 (300)
+.+++.+.+...+ ...+.++.|.-+. +.++.+.+ +|+.++.. ...+..+..+++.+. +++ |.+
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~-vIa 156 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP--DKT-ICA 156 (346)
T ss_pred CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCc-EEE
Confidence 3355555554443 2344555565432 34444555 47776654 235677888887762 555 678
Q ss_pred cCCCChHHHHHHHHCCCcEEEec
Q 022271 141 GGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 141 GGI~~g~~v~aal~lGAdgV~~G 163 (300)
|.|.|++.+...+..|||+|=+|
T Consensus 157 GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 157 GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred ecccCHHHHHHHHHcCCCEEEEc
Confidence 99999999999999999998654
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.05 E-value=6.3 Score=37.30 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+..+++.. ++|||+- ||.+.+++..+...|+|+|.+..
T Consensus 205 i~~l~~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 205 IKWLRKHT---KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHhc---CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 34444443 7899888 78999999999999999999843
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.98 E-value=13 Score=35.00 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=30.9
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCCh------HHHHHHHHCCCcEEEeccccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDA------RGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g------~~v~aal~lGAdgV~~GT~fl 167 (300)
+..++.+++.. ..|||+.-.=+.| .-..+|.++||||+++=..|-
T Consensus 251 l~ai~~lk~~~---~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 251 LSAVPVIKKLT---HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred HHHHHHHHHhc---CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 34566666655 7999885443344 345788999999999965553
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.4 Score=37.31 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++-+++-.||.+++|++.+-..|..+|.+|-..+-.
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhc
Confidence 788999999999999999999999999999777654
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=86.71 E-value=6.9 Score=35.53 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC-----------------CCCHHHHHHHHH-HHHhh-cCCc
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------WEAPDYLRDLIR-KTRSL-TERP 65 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------~~~~~~l~~~i~-~~r~~-~~~P 65 (300)
+...-..|||.++-+ .-|.+..+..||..+|-..+ |.+..++-.+.. ++--. .+.|
T Consensus 9 ~~i~~~~pIig~gaG-----tGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP 83 (268)
T PF09370_consen 9 AQIKAGKPIIGAGAG-----TGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP 83 (268)
T ss_dssp HHHHTT--EEEEEES-----SHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-
T ss_pred HHHhCCCceEEEeec-----cchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC
Confidence 334456789875432 25777788888888873211 224444333332 22222 2468
Q ss_pred EEeeeecCCCc---HHHHHHHHHcCCcEEEEcC----------------CCC---cHHHHHHHHHCCCe-----------
Q 022271 66 FGVGVVLAFPH---NENIKAILSEKVAVLQVSW----------------GEY---SEELVLEAHSAGVK----------- 112 (300)
Q Consensus 66 ~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~----------------G~~---~~~~v~~~~~~G~~----------- 112 (300)
+-.++...+|+ ...++.+.+.|...|...- |.- --+.+..+|+.|..
T Consensus 84 ViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A 163 (268)
T PF09370_consen 84 VIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQA 163 (268)
T ss_dssp EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHH
T ss_pred EEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHH
Confidence 77777777765 5678888888888775421 110 01344444444433
Q ss_pred ---------Eeec---------cC---------hhchHHHHHHhhCC--CC-CcEEEccCCCChHHHHHHHH--CCCcEE
Q 022271 113 ---------VVPQ---------DG---------LISLLPMVVDLIGD--RD-IPIIAAGGIVDARGYVAALS--LGAQGI 160 (300)
Q Consensus 113 ---------v~~~---------~~---------~~~ll~~v~~~~~~--~~-iPViaaGGI~~g~~v~aal~--lGAdgV 160 (300)
++.. .+ ....+.++.++.+. .+ +-++-.|-|.+++|+...+. -|++|.
T Consensus 164 ~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf 243 (268)
T PF09370_consen 164 RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF 243 (268)
T ss_dssp HHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred HHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 3221 00 22355566665432 13 55666777999999999998 578999
Q ss_pred Eeccccc
Q 022271 161 CLGTRFV 167 (300)
Q Consensus 161 ~~GT~fl 167 (300)
+=||.|=
T Consensus 244 ~G~Ss~E 250 (268)
T PF09370_consen 244 IGASSME 250 (268)
T ss_dssp EESTTTT
T ss_pred ecccchh
Confidence 9888763
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=86.21 E-value=9.9 Score=34.44 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
.++++.+++.|++.|.+. |.-. +... +...--..++..+++..++ ++||++.-|=.+-++.. .+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~-GstG-E~~~---------ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a 88 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVL-GTTG-EAPT---------LTDEERKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHA 88 (281)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCc-cccc---------CCHHHHHHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHH
Confidence 567888888899888765 3311 1000 0000023455666666543 68988776655555433 44
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
-.+|||+|++-.++........--.|=+.|.++.+..+ .++. .|...+..+......++.+
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi-~iYn---~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPV-ILYN---IPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHhc
Confidence 56899999999998876321112223334444443332 2443 2455556676666666543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=86.04 E-value=25 Score=31.45 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=89.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecC------------CCCCCHHHHHHHHHHHHhhcCCcEEeee
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA------------PDWEAPDYLRDLIRKTRSLTERPFGVGV 70 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~------------~~~~~~~~l~~~i~~~r~~~~~P~gvnl 70 (300)
|.+++.-.-||+. | ++-++--+..+.++|.=.++-. .+..+.+++.+.++.+...++.|+-+.+
T Consensus 1 ~r~l~~~~~~i~~-~---~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~ 76 (243)
T cd00377 1 LRALLESGGPLVL-P---GAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADA 76 (243)
T ss_pred ChhHHhCCCcEEe-c---CCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEc
Confidence 3455554456663 2 4556666666666664333211 1134668888888888887888987766
Q ss_pred ecCCCc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC-CCCcEEEc-----
Q 022271 71 VLAFPH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD-RDIPIIAA----- 140 (300)
Q Consensus 71 ~~~~~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~-~~iPViaa----- 140 (300)
-.-... .+.++.+.+.|+..|.+--+..++. . .+-.+..++...-....+..++++.++ .+++|+|-
T Consensus 77 ~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~-~--g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~ 153 (243)
T cd00377 77 DTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKK-C--GHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL 153 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCcc-c--cCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh
Confidence 543322 3457777788999887721111110 0 000111111111122334445555433 36777776
Q ss_pred ---cCCCChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCC
Q 022271 141 ---GGIVDARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 141 ---GGI~~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~ 187 (300)
.|+.+.-. ..++..+|||+|++=+.. +..+-+++.+.-+
T Consensus 154 ~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~ 196 (243)
T cd00377 154 AGEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPD 196 (243)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCC
Confidence 23322221 335566999999985443 4455555665533
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.82 E-value=27 Score=31.74 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=29.7
Q ss_pred chHHHHHHhhCCCCCcEEE-ccCCCC-----hHHHHHHHHCCCcEEEeccccc
Q 022271 121 SLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPVia-aGGI~~-----g~~v~aal~lGAdgV~~GT~fl 167 (300)
..++.+++.. +.||+. ..-... .....++.++||+|+++=+.|-
T Consensus 186 ~~i~~lk~~~---~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 186 AAVAVIKELS---HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHHHHHhcc---CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 3455555444 799999 344333 4567788999999999865543
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.65 E-value=29 Score=31.91 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=44.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChH-HHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDAR-GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~-~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.+.++.++.+.+ ++|++.=||=+.+. ++.++..+|..-|-++|-+... .....|+.+
T Consensus 190 d~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a----~~~~~~~~~ 247 (284)
T PRK12857 190 DFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA----FVARLREVL 247 (284)
T ss_pred CHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH----HHHHHHHHH
Confidence 467888898887 79999999988775 4778999999999999987665 234445544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=85.48 E-value=7.6 Score=36.34 Aligned_cols=106 Identities=13% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHhh--cCCcEEeeeecCCCc------HHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhc
Q 022271 53 DLIRKTRSL--TERPFGVGVVLAFPH------NENIKAILSE--KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLIS 121 (300)
Q Consensus 53 ~~i~~~r~~--~~~P~gvnl~~~~~~------~~~~~~~~e~--g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ 121 (300)
..++++++. .+.|+++|+...... ++..+.+.+. .++.+.++++||... |...... .....
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~--------g~~~~~~~~~~~~ 187 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP--------GLRDLQGKEALRE 187 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC--------ccccccCHHHHHH
Confidence 344444433 468999999876421 3444444443 489999999997421 1111111 12345
Q ss_pred hHHHHHHhhC--CCCCcEEEcc--CCC--ChHHHHHHH-HCCCcEEEecccc
Q 022271 122 LLPMVVDLIG--DRDIPIIAAG--GIV--DARGYVAAL-SLGAQGICLGTRF 166 (300)
Q Consensus 122 ll~~v~~~~~--~~~iPViaaG--GI~--~g~~v~aal-~lGAdgV~~GT~f 166 (300)
++..+++.+. ..++||++== +.. +-..+++++ ..|||+|.+-.++
T Consensus 188 iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 188 LLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred HHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6666766652 0126766532 333 334455444 4899999876554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=26 Score=33.34 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=29.7
Q ss_pred hchHHHHHHhhCCCCCcEEEcc----CCCCh--HHHHHHHHCCCcEEEecccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAG----GIVDA--RGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaG----GI~~g--~~v~aal~lGAdgV~~GT~f 166 (300)
+..++.+++.. ++|||+.- |.++. .-..+|+++||||+++=+.|
T Consensus 260 l~ai~~lk~~~---~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 260 LSVIPVLRSLT---HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred HHHHHHHHHhh---CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 45677776665 79998864 33322 23557788999999995544
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.6 Score=43.37 Aligned_cols=60 Identities=28% Similarity=0.389 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 101 ELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.++.+.++|+.+++... .+..+.++++... ++||++ |.+.|.+++..++.+|||+|.+|
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 445556678888876421 2456777777642 577666 99999999999999999999864
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.62 E-value=27 Score=30.64 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=81.2
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcC---CcEEEEcCCCC-cHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEK---VAVLQVSWGEY-SEE 101 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g---~~~i~~~~G~~-~~~ 101 (300)
+...+.+.+.+.++-. .++++.....+.+.+.. -+ .+=+....+. .+.++.+.+.- ++ +.+..|.. ..+
T Consensus 6 ~~~~l~~~~vi~vir~---~~~~~a~~~~~al~~~G-i~-~iEit~~~~~a~~~i~~l~~~~~~~p~-~~vGaGTV~~~~ 79 (213)
T PRK06552 6 ILTKLKANGVVAVVRG---ESKEEALKISLAVIKGG-IK-AIEVTYTNPFASEVIKELVELYKDDPE-VLIGAGTVLDAV 79 (213)
T ss_pred HHHHHHHCCEEEEEEC---CCHHHHHHHHHHHHHCC-CC-EEEEECCCccHHHHHHHHHHHcCCCCC-eEEeeeeCCCHH
Confidence 4455666777777654 36666655555554421 11 1222333232 34455554432 23 33444542 345
Q ss_pred HHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHH
Q 022271 102 LVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 181 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~ 181 (300)
-++...++|...+... .+-+++.++.++.++|++. |..|+.++..++.+|||.|.+ | ..+. ....|-+.
T Consensus 80 ~~~~a~~aGA~FivsP---~~~~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl---F--Pa~~-~G~~~ik~ 148 (213)
T PRK06552 80 TARLAILAGAQFIVSP---SFNRETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL---F--PGST-LGPSFIKA 148 (213)
T ss_pred HHHHHHHcCCCEEECC---CCCHHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE---C--Cccc-CCHHHHHH
Confidence 5666777787776532 3445555554434788876 899999999999999999997 3 2222 33555555
Q ss_pred HHc
Q 022271 182 LVE 184 (300)
Q Consensus 182 i~~ 184 (300)
+..
T Consensus 149 l~~ 151 (213)
T PRK06552 149 IKG 151 (213)
T ss_pred Hhh
Confidence 544
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=84.48 E-value=29 Score=31.35 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=58.0
Q ss_pred ccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecC------------CCCCCHHHHHHHHHHHHhhcCCc-EEe
Q 022271 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA------------PDWEAPDYLRDLIRKTRSLTERP-FGV 68 (300)
Q Consensus 2 ~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~------------~~~~~~~~l~~~i~~~r~~~~~P-~gv 68 (300)
+|.++..-..||+. | ++-+...|..+.++|.=.++.. .+..+.+++...++.+++.++.| +-+
T Consensus 3 ~lr~l~~~~~~l~~-~---~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~via 78 (254)
T cd06557 3 DLQKMKKAGEKIVM-L---TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVA 78 (254)
T ss_pred hHHHHHhCCCcEEE-E---eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 35566655567764 2 4556667777777774333211 01246777888888887777888 444
Q ss_pred eee-cCCCc--H---H-HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 69 GVV-LAFPH--N---E-NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 69 nl~-~~~~~--~---~-~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
.+- ..... + + ..+.+.+.|+..|-+--|....+.|+.+.++|+.|+
T Consensus 79 D~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 79 DMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGIPVM 131 (254)
T ss_pred eCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCee
Confidence 442 11111 1 1 233444477777766433212344455555665544
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.79 E-value=6.5 Score=34.51 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
....+.+++.|.+.|.+.+-+|. ..+.++++++.. .--+|.||=|-|++++.++.++|
T Consensus 28 ~~~a~Ali~gGi~~IEITl~sp~-------------------a~e~I~~l~~~~---p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 28 LPLAKALIEGGIPAIEITLRTPA-------------------ALEAIRALAKEF---PEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred HHHHHHHHHcCCCeEEEecCCCC-------------------HHHHHHHHHHhC---cccEEccccccCHHHHHHHHHcC
Confidence 34567777888888887776541 234555666665 23489999999999999999998
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 86 a~fiV 90 (211)
T COG0800 86 AQFIV 90 (211)
T ss_pred CCEEE
Confidence 87553
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=5.2 Score=37.53 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCc--EEEEcCCCCcH--HHHHHHHHCCC--eEeec-------
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA--VLQVSWGEYSE--ELVLEAHSAGV--KVVPQ------- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~--~i~~~~G~~~~--~~v~~~~~~G~--~v~~~------- 116 (300)
.+.+.+.++-+.++. +++ +.....++......+.+++ ++..+.|..++ +-++++-++|+ .++..
T Consensus 48 ~iN~~LA~~a~~~G~-~~~--~~k~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~ 124 (326)
T PRK05458 48 IIDEKIAEWLAENGY-FYI--MHRFDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS 124 (326)
T ss_pred hhHHHHHHHHHHcCC-EEE--EecCCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch
Confidence 566666666444422 222 2211223334444444443 34444454332 34555567754 66553
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.....++.++++... ++| +.+|.|.|.+++..+..+|||++.+|
T Consensus 125 ~~~~e~I~~ir~~~p--~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 125 DSVINMIQHIKKHLP--ETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhhCC--CCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 224567777777652 344 56777999999999999999999886
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=13 Score=34.19 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=70.3
Q ss_pred HHHHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HH
Q 022271 77 NENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VA 151 (300)
Q Consensus 77 ~~~~~~~~e-~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~a 151 (300)
..+++.+++ .|++.|.+. |.-. +... +...--..++..+++.+++ ++|||+.=|=.+-+++ ..
T Consensus 27 ~~li~~l~~~~Gv~gi~v~-GstG-E~~~---------Ls~eEr~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~ 94 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVG-GSTG-EAFL---------LSTEEKKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKY 94 (293)
T ss_pred HHHHHHHHhcCCCCEEEEC-CCcc-cccc---------CCHHHHHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHH
Confidence 567888888 999988775 3211 1000 0000023455566666643 6899986654455554 34
Q ss_pred HHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 152 ALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
+-.+|||+|++-+++........--.|=+.+.++.+.. ..++. .|...+..+..+++.++.+
T Consensus 95 a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lP-v~iYn---~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 95 ATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNP-MIVYN---IPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCC-EEEEe---CchhhccCCCHHHHHHHhc
Confidence 56799999999999876642112222334444444433 23443 2444455666666666543
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.42 E-value=14 Score=33.85 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+++.++++|+. .|+-.++-......++++.++++|+|+|-+. ...|+++-+.. .++ .
T Consensus 173 ~i~~Av~~aR~~--~~~~~kIEVEvesle~~~eAl~agaDiImLD-Nm~~e~~~~av--------------~~l----~- 230 (280)
T COG0157 173 SITEAVRRARAA--APFTKKIEVEVESLEEAEEALEAGADIIMLD-NMSPEELKEAV--------------KLL----G- 230 (280)
T ss_pred cHHHHHHHHHHh--CCCCceEEEEcCCHHHHHHHHHcCCCEEEec-CCCHHHHHHHH--------------HHh----c-
Confidence 366778888875 3665666665567889999999999999997 33344332221 111 1
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+. .++-+=++||| +.+.+.++-..|.|.+-+|...
T Consensus 231 ~~-~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 231 LA-GRALLEASGGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred cC-CceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 11 14667889999 6788999999999999998543
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=83.39 E-value=15 Score=34.12 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHHHHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTR 59 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~i~~~r 59 (300)
.++.||+.|.=. ...+.+....+..+| +|.+-... + ...+...+.+++.+
T Consensus 10 ~l~NPv~~AsG~-~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~ 87 (310)
T PRK02506 10 KFDNCLMNAAGV-YCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ 87 (310)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence 367899987632 224566666677777 66552210 0 12355555566655
Q ss_pred hhc-CCcEEeeeecCCC--cHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHHHHhhCCCC
Q 022271 60 SLT-ERPFGVGVVLAFP--HNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 60 ~~~-~~P~gvnl~~~~~--~~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v~~~~~~~~ 134 (300)
+.. +.|+-+++..... +.+.++.+.+.+ ++.|.++..||- +. .+..+..+ ..+..++..|++.+ +
T Consensus 88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn---~~----~~~~~g~d~~~~~~i~~~v~~~~---~ 157 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPN---VP----GKPQIAYDFETTEQILEEVFTYF---T 157 (310)
T ss_pred hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCC---CC----CccccccCHHHHHHHHHHHHHhc---C
Confidence 543 5888888766443 244556666666 899999988862 11 11111111 12445666666665 6
Q ss_pred CcEEE--ccCCCChHHHHHHH-HCCCcE
Q 022271 135 IPIIA--AGGIVDARGYVAAL-SLGAQG 159 (300)
Q Consensus 135 iPVia--aGGI~~g~~v~aal-~lGAdg 159 (300)
+||++ .--+ +-.+++++. .+++++
T Consensus 158 ~Pv~vKlsp~~-~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 158 KPLGVKLPPYF-DIVHFDQAAAIFNKFP 184 (310)
T ss_pred CccEEecCCCC-CHHHHHHHHHHhCcCc
Confidence 78774 2223 445555443 234443
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.37 E-value=30 Score=30.16 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred HHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHH-cCCcEEEEcCCCC-cHHHHHHH
Q 022271 30 AVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILS-EKVAVLQVSWGEY-SEELVLEA 106 (300)
Q Consensus 30 avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e-~g~~~i~~~~G~~-~~~~v~~~ 106 (300)
...+.+.+.++-. .+++++.+..+.+.+-. --.+-+....+. .+.++.+.+ ++.+ +.+..|.. ..+-++..
T Consensus 6 ~l~~~~~~~v~r~---~~~~~~~~~~~a~~~gG--i~~iEvt~~~~~~~~~i~~l~~~~~~~-~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 6 PFTKLPLIAILRG---ITPDEALAHVGALIEAG--FRAIEIPLNSPDPFDSIAALVKALGDR-ALIGAGTVLSPEQVDRL 79 (206)
T ss_pred HHHhCCEEEEEeC---CCHHHHHHHHHHHHHCC--CCEEEEeCCCccHHHHHHHHHHHcCCC-cEEeEEecCCHHHHHHH
Confidence 3455666776654 37777766666665421 112334333332 345555554 3334 33444432 35667777
Q ss_pred HHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 107 HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 107 ~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
.++|...++....-.-+.+.+.. .++|++.. ..|..++..+..+|||.|.+
T Consensus 80 ~~aGA~fivsp~~~~~v~~~~~~---~~~~~~~G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 80 ADAGGRLIVTPNTDPEVIRRAVA---LGMVVMPG--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHcCCCEEECCCCCHHHHHHHHH---CCCcEEcc--cCCHHHHHHHHHcCCCEEEE
Confidence 88888888753322222222222 25666554 99999999999999999985
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.9 Score=42.29 Aligned_cols=55 Identities=13% Similarity=0.389 Sum_probs=47.9
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
|++-++++.||+.+||. .+|..+|+.++++.|++|+|.. + +++++-.++++++++
T Consensus 27 ~~~~~~l~~p~~s~~md-tvTe~ema~~ma~~gg~GvI~~-n-~~~e~q~~~V~~Vk~ 81 (450)
T TIGR01302 27 ITRNIKLNIPILSSPMD-TVTESRMAIAMAREGGIGVIHR-N-MSIEEQAEQVKRVKR 81 (450)
T ss_pred cccccCcCCCeeecCCC-ccCHHHHHHHHHhcCCCceeec-C-CCHHHHHHHHhhhcc
Confidence 56778899999999998 7999999999999999999986 4 678877777777765
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=83.23 E-value=36 Score=30.97 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=80.5
Q ss_pred HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcC
Q 022271 25 PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~ 95 (300)
.+++.-..++|.=|++.++. .++.++-.+.++.+.+.. +.|+-+++-..... .+.++.+.+.|++.+.+..
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 46777777888878775532 257777777777776643 35776666543321 4566777778888776531
Q ss_pred ---CCC-cHHHHHHHH----HCCCeEeec----------------------------c--ChhchHHHHHHhhCCCCCcE
Q 022271 96 ---GEY-SEELVLEAH----SAGVKVVPQ----------------------------D--GLISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 96 ---G~~-~~~~v~~~~----~~G~~v~~~----------------------------~--~~~~ll~~v~~~~~~~~iPV 137 (300)
..+ .+++++..+ ..+..++.. . +.+.-+.++..... .+..|
T Consensus 105 P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~~~~~~~~~~~~~-~~~~v 183 (289)
T PF00701_consen 105 PYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGDLERLIQLLRAVG-PDFSV 183 (289)
T ss_dssp STSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSBHHHHHHHHHHSS-TTSEE
T ss_pred cccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchhHHHHHHHhhhcc-cCeee
Confidence 111 222332221 234444421 1 12222334444432 14443
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..| +...+..++.+|++|++.|+..+..++
T Consensus 184 -~~G---~d~~~~~~l~~G~~G~is~~~n~~P~~ 213 (289)
T PF00701_consen 184 -FCG---DDELLLPALAAGADGFISGLANVFPEL 213 (289)
T ss_dssp -EES---SGGGHHHHHHTTSSEEEESGGGTHHHH
T ss_pred -ecc---ccccccccccccCCEEEEcccccChHH
Confidence 444 555688999999999999998877644
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase | Back alignment and domain information |
|---|
Probab=82.91 E-value=5.1 Score=35.18 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=53.4
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHH---H
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVA---A 152 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~a---a 152 (300)
.+...|.+++.+....|++++++.+++.+..++.. ..++..++++.+.++ ..+++|+..|...+.+-... +
T Consensus 111 ~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~ 190 (213)
T cd02069 111 ILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAP 190 (213)
T ss_pred HHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhcc
Confidence 34457999999988888899999999988887764 123334444444442 23788888888777655433 2
Q ss_pred HHCCCcEE
Q 022271 153 LSLGAQGI 160 (300)
Q Consensus 153 l~lGAdgV 160 (300)
-..|||+-
T Consensus 191 ~~~gad~y 198 (213)
T cd02069 191 EYDGPVVY 198 (213)
T ss_pred ccCCCceE
Confidence 34788863
|
This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy). |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=82.39 E-value=38 Score=30.60 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=73.9
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCC--cHHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP--HNENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~--~~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-..+.|.=|++.++. .++.++-++.++.+++.. +.|+-+++..... ..+..+.+.+.|++.+.+..
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5555556667666664432 357777777777776654 3465555443221 13445566666777665531
Q ss_pred ---CCCcHHHHHHHH---H-CCCeEeec------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 ---GEYSEELVLEAH---S-AGVKVVPQ------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 ---G~~~~~~v~~~~---~-~G~~v~~~------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
...++++++..+ + .++.++.. .+.+..+.++++... .++.|+
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~~~~-~~~~v~ 180 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLG-PDFAVL 180 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcC-CCeEEE
Confidence 000122222221 1 23333211 112334444544432 134333
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.|. ...+...+.+|++|.+.|+..+..++
T Consensus 181 -~G~---d~~~~~~l~~G~~G~i~~~~n~~p~~ 209 (281)
T cd00408 181 -SGD---DDLLLPALALGADGAISGAANVAPKL 209 (281)
T ss_pred -Ecc---hHHHHHHHHcCCCEEEehHHhhCHHH
Confidence 332 55777889999999999987666543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase | Back alignment and domain information |
|---|
Probab=82.20 E-value=27 Score=35.38 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=83.4
Q ss_pred HhCCceEEecCCCCCCHHHHHHHHHHHHhhc----------CCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCCcH
Q 022271 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT----------ERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSE 100 (300)
Q Consensus 32 s~aGglG~i~~~~~~~~~~l~~~i~~~r~~~----------~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~~~ 100 (300)
+..|.+|++.. ...+++++++..+.++... +.-+-+..+...|. ...++.+.+ ++|++++...
T Consensus 380 ~~~G~~~Im~P-mV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~-~vDf~sIGtn---- 453 (565)
T TIGR01417 380 SAYGKLRIMFP-MVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK-EVDFFSIGTN---- 453 (565)
T ss_pred HhcCCCeEEec-CCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh-hCCEEEEChh----
Confidence 45688888864 3467888776666555310 11122444444333 344666666 8999988532
Q ss_pred HHHHHHHH---CCCeEe--ec---cChhchHHHHHHhhCCCCCcEEEccCC-CChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 101 ELVLEAHS---AGVKVV--PQ---DGLISLLPMVVDLIGDRDIPIIAAGGI-VDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 101 ~~v~~~~~---~G~~v~--~~---~~~~~ll~~v~~~~~~~~iPViaaGGI-~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++....-. ..-.+. .+ ...+.++.++.++.+..++||-..|.+ +|+..+...+.+|.+.+.|+...+..
T Consensus 454 DLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i~~-- 531 (565)
T TIGR01417 454 DLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILR-- 531 (565)
T ss_pred HHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhHHH--
Confidence 33332110 000011 11 345677777777654447999877764 68888888899999999998776643
Q ss_pred cCCCHHHHHHHHc
Q 022271 172 SYAHPEYKRKLVE 184 (300)
Q Consensus 172 s~~~~~~k~~i~~ 184 (300)
.|+.|.+
T Consensus 532 ------~k~~i~~ 538 (565)
T TIGR01417 532 ------IKMIIRK 538 (565)
T ss_pred ------HHHHHHh
Confidence 5665554
|
This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport. |
| >KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.06 E-value=11 Score=32.28 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC-----hhchHHHHH----------
Q 022271 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG-----LISLLPMVV---------- 127 (300)
Q Consensus 63 ~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~-----~~~ll~~v~---------- 127 (300)
.+|.-|+++.++|.+..+..+-+.+.++|.++ |..+.+.+.++-..-++|++... .+..+|+.-
T Consensus 91 p~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH-G~es~~~~~~L~rpvikvfpln~n~~~~~~~~vP~~d~~lvdsetGG 169 (227)
T KOG4202|consen 91 PAKKLVGVFVNQPEETILRAADSSDLDIVQLH-GNESRAAFSRLVRPVIKVFPLNANEDGKLLNEVPEEDWILVDSETGG 169 (227)
T ss_pred cchheEEEeecCCHHHHHHHHhhcCCceEEec-CcccHHHHHHhCCceEEEEecCchhhhHhhccCCchhheeeccccCc
Confidence 34556888888888889999999999999999 55577777776555555554310 111122111
Q ss_pred -----------HhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEecc
Q 022271 128 -----------DLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 164 (300)
Q Consensus 128 -----------~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT 164 (300)
.-.-...-|-+.|||+ +++-+..||. ++-+||=+-+
T Consensus 170 ~G~~~dW~~~s~~~vr~~~~~~LAGGl-tP~NV~dAlsi~~p~gvDVSs 217 (227)
T KOG4202|consen 170 SGKGFDWAQFSLPSVRSRNGWLLAGGL-TPTNVSDALSILQPDGVDVSS 217 (227)
T ss_pred CcCccCHHHhcCccccccCceEEecCC-CccchHHhhhhcCCceeeccC
Confidence 0000012356788888 6777777877 5777776644
|
|
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=22 Score=32.02 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++||+-.|+|.......-+...+.||+.+|++-+
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl 236 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASL 236 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 5899999999998888777889999999999887
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=81.90 E-value=4.6 Score=36.54 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=49.8
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+.++.....++|+..+.. .|.+..+.++++++ ++||+.-==|-|+.++..+..+|||+|.+=.++|-..
T Consensus 70 ~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~---~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV---DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS---SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh---CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 456666666666655433 35788899999988 8999999999999999999999999999977776553
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=81.73 E-value=6.5 Score=35.61 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++.....+.|...+-. .+.+..+..+++.+ ++||+.--=|.+..++..+..+|||+|.+.-.++
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v---~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV---SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc---CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 45555556666654432 35678888898887 8999988889999999999999999999987775
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=81.55 E-value=10 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCcEEEccCCCChHHHHHHHH--CCCcEEEecc
Q 022271 134 DIPIIAAGGIVDARGYVAALS--LGAQGICLGT 164 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~--lGAdgV~~GT 164 (300)
++++++.|...+... ...+. .|+|.|++|-
T Consensus 81 ~~~iv~GG~~~t~~~-~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 81 NIPIVVGGPHATADP-EEILREYPGIDYVVRGE 112 (121)
T ss_dssp TSEEEEEESSSGHHH-HHHHHHHHTSEEEEEET
T ss_pred CCEEEEECCchhcCh-HHHhccCcCcceecCCC
Confidence 677777777755333 33443 8999999984
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=81.51 E-value=27 Score=31.75 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHhCCceEEecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc----H----HHH
Q 022271 22 ISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH----N----ENI 80 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~--------~~-----~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~----~----~~~ 80 (300)
.-+..+|..+.++| +.++-.+ +| .+.|+.....+.+|+-...+|-|-=++..++ + ...
T Consensus 23 aYD~~~A~~~d~ag-vD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~ 101 (261)
T PF02548_consen 23 AYDYPSARIADEAG-VDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAG 101 (261)
T ss_dssp --SHHHHHHHHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHH
T ss_pred cccHHHHHHHHHcC-CCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHH
Confidence 34667788778887 4443111 11 3567777788888877766665543333222 2 234
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
+.+.|.|++.|=+-.|....+.++.+.++|+.|+.
T Consensus 102 rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~g 136 (261)
T PF02548_consen 102 RLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMG 136 (261)
T ss_dssp HHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEE
T ss_pred HHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEE
Confidence 55566999999998775557889999999999985
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=81.40 E-value=29 Score=34.22 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=71.6
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc--HHHHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--EELVL 104 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~--~~~v~ 104 (300)
+.+..|-+|||-+...+ ..++-..+.-+++- +.-.-.-+..+.....++.++.+.+.+|++|.++.|... ++.+-
T Consensus 67 ~la~SSAaGGLrmvv~G--lv~~~Ta~AAk~AA-lgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il 143 (457)
T PF13941_consen 67 VLACSSAAGGLRMVVIG--LVPDLTAEAAKRAA-LGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVIL 143 (457)
T ss_pred EEEECCCCCcceEEEEe--cCHHHHHHHHHHHH-hcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHH
Confidence 33344667888877663 35544333333332 222223355555556688999999999999999876531 12221
Q ss_pred HHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEec
Q 022271 105 EAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLG 163 (300)
Q Consensus 105 ~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~G 163 (300)
..-..+.+. ..++|||.||-..-.+++.+.|. .|.+-+..-
T Consensus 144 ----------------~nA~~La~~--~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~ 185 (457)
T PF13941_consen 144 ----------------HNAEMLAEA--NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITE 185 (457)
T ss_pred ----------------HHHHHHHhC--CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeC
Confidence 111122222 13799999999999999999999 677766654
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=81.21 E-value=18 Score=33.11 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.|.+. |...+ ... +...--..++..+++.+++ ++|||+.-|- +-++.. .+
T Consensus 24 ~~l~~~l~~~Gv~gi~v~-GstGE-~~~---------Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 24 RAHVEWLLSYGAAALFAA-GGTGE-FFS---------LTPDEYAQVVRAAVEETAG-RVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred HHHHHHHHHcCCCEEEEC-cCCcC-ccc---------CCHHHHHHHHHHHHHHhCC-CCCEEEecCC-CHHHHHHHHHHH
Confidence 457788888899988765 32110 000 0000012455566666543 6999997775 445543 34
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||++++-+++.... +...-+.| +.|.++.+.. ..++. .+...+....+.++.
T Consensus 91 ~~~Gad~v~~~pP~y~~~~~~~i~~~f-~~v~~~~~~p-i~lYn------~~g~~l~~~~l~~L~ 147 (289)
T cd00951 91 EKAGADGILLLPPYLTEAPQEGLYAHV-EAVCKSTDLG-VIVYN------RANAVLTADSLARLA 147 (289)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHH-HHHHhcCCCC-EEEEe------CCCCCCCHHHHHHHH
Confidence 459999999999987642 22222323 3344444433 23443 123445555655554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=81.01 E-value=18 Score=33.56 Aligned_cols=123 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.|.+. |.. .+.... ...--..++..+++.+++ ++|||+.=|=.+-+++. .|
T Consensus 32 ~~lv~~li~~Gv~Gi~v~-Gst-GE~~~L---------t~eEr~~v~~~~~~~~~g-rvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 32 ARLVERLIAAGVDGILTM-GTF-GECATL---------TWEEKQAFVATVVETVAG-RVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHHHcCCCEEEEC-ccc-ccchhC---------CHHHHHHHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHH
Confidence 456788888899988775 331 111100 000012455556666643 69998776644444433 34
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-++|.... +...-+ |=+.|.++. +..+ .++. .|...+.-+..+.+.++.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~-yf~~va~a~~~lPv-~iYn---~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQ-FYRDVAEAVPEMAI-AIYA---NPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHH-HHHHHHHhCCCCcE-EEEc---CchhcCCCCCHHHHHHHh
Confidence 558999999999976543 222333 334455554 3332 3443 133323345555555543
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=46 Score=30.52 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC----CcH----HHHHHHHHcCCcEEE
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF----PHN----ENIKAILSEKVAVLQ 92 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~----~~~----~~~~~~~e~g~~~i~ 92 (300)
-++..+|... ++.++.++-+- |..+.+.++..|+...+ .+.|+-+++.... +.+ -....+.+.++|+..
T Consensus 3 lv~~~~~l~~-A~~~~yaV~Af-n~~n~e~~~avi~aAe~-~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 3 LVQMKELLKK-ANQENYGVGAF-SVANMEMVMGAIKAAEE-LNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred CCcHHHHHHH-HHHCCceEEEE-EeCCHHHHHHHHHHHHH-hCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE
Confidence 3666677665 44455554433 44678888888877765 3578777665432 111 112233445666543
Q ss_pred -EcCCCCcHHHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEcc-------------C--CCChHHH
Q 022271 93 -VSWGEYSEELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAG-------------G--IVDARGY 149 (300)
Q Consensus 93 -~~~G~~~~~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaG-------------G--I~~g~~v 149 (300)
+..|. ..+.+.++-+.|...+.... .+.+..++++..+..++||=+.+ | ..|++++
T Consensus 80 HlDH~~-~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea 158 (281)
T PRK06806 80 HFDHGM-TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEA 158 (281)
T ss_pred ECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHH
Confidence 33343 34566666667776664311 22333334433322234443332 2 4688888
Q ss_pred HHHHH-CCCcEEEe--ccccccCcc-cCCCHHHHHHHHcC
Q 022271 150 VAALS-LGAQGICL--GTRFVASEE-SYAHPEYKRKLVEM 185 (300)
Q Consensus 150 ~aal~-lGAdgV~~--GT~fl~t~E-s~~~~~~k~~i~~a 185 (300)
.++.. .|+|.+-+ ||.|-..+. ....-..-+.|.+.
T Consensus 159 ~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~ 198 (281)
T PRK06806 159 KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV 198 (281)
T ss_pred HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh
Confidence 88774 69998888 998885532 12333334444443
|
|
| >TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family | Back alignment and domain information |
|---|
Probab=80.49 E-value=9.5 Score=32.94 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=51.9
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aa 152 (300)
..+...|.+++.+....|++++++.+++.+..++.. ...+.-+.++.+.+++ .+++|+..|...+.+ . +
T Consensus 106 ~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~-~--~ 182 (197)
T TIGR02370 106 TMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD-W--A 182 (197)
T ss_pred HHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH-H--H
Confidence 344467899999988888899999999888877653 1122333444443321 258888888888763 3 4
Q ss_pred HHCCCcEEE
Q 022271 153 LSLGAQGIC 161 (300)
Q Consensus 153 l~lGAdgV~ 161 (300)
-..|||+..
T Consensus 183 ~~~gad~~~ 191 (197)
T TIGR02370 183 DKIGADVYG 191 (197)
T ss_pred HHhCCcEEe
Confidence 456999753
|
This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=80.47 E-value=19 Score=32.85 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
.++++.+++.|++.|.+. |... +.... ...--..++..+++.+++ ++||++.=|=.+-+++. .|
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~-GstG-E~~~l---------s~~Er~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVG-GTTG-EGQLM---------SWDEHIMLIGHTVNCFGG-KIKVIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred HHHHHHHHHcCCCEEEEC-ccCc-chhhC---------CHHHHHHHHHHHHHHhCC-CCcEEEECCCccHHHHHHHHHHH
Confidence 567888888999998875 3311 11100 000012345555665543 68998766554555543 35
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-.++.... +...-+.|+ .+.++. - ..++. .|+..+.-+......++.
T Consensus 93 ~~~Gadav~~~~P~y~~~~~~~i~~~f~-~va~~~--p-i~lYn---~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 93 FAVGMHAALHINPYYGKTSQEGLIKHFE-TVLDMG--P-TIIYN---VPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred HHcCCCEEEEcCCccCCCCHHHHHHHHH-HHHhhC--C-EEEEE---ChhHhCcCCCHHHHHHHh
Confidence 579999999999977653 222233333 344443 2 33553 244444555555555554
|
|
| >PLN02623 pyruvate kinase | Back alignment and domain information |
|---|
Probab=80.34 E-value=16 Score=37.05 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH----HCC--CeEeec-----------------------cC---------
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAH----SAG--VKVVPQ-----------------------DG--------- 118 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~----~~G--~~v~~~-----------------------~~--------- 118 (300)
.+.++..++.++++|.+||=.- .+.+..++ +++ +.++.+ .+
T Consensus 281 ~~di~f~~~~~vD~ialSFVr~-a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~ 359 (581)
T PLN02623 281 WEDIKFGVENKVDFYAVSFVKD-AQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 359 (581)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcH
Confidence 4568888999999999998442 33333332 333 344443 01
Q ss_pred -hhchHHHHHHhhCCCCCcEEEcc---------CCCC---hHHHHHHHHCCCcEEEec
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAG---------GIVD---ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaG---------GI~~---g~~v~aal~lGAdgV~~G 163 (300)
...+..++.+..+..++|++.+. ...+ ..|++.++..|+|+|+++
T Consensus 360 ~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs 417 (581)
T PLN02623 360 EVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 417 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEec
Confidence 11122333333322378998776 4333 358999999999999998
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=80.26 E-value=21 Score=32.72 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEc-cCCCChHHHH---H
Q 022271 77 NENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV---A 151 (300)
Q Consensus 77 ~~~~~~~~e~g-~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaa-GGI~~g~~v~---a 151 (300)
..+++.+++.| ++.|.+. |...+ ... +...--..++..+++.+++ ++||++. |+.++.+.+. .
T Consensus 24 ~~~i~~~i~~G~v~gi~~~-GstGE-~~~---------Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~ 91 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVG-GSTGE-NFM---------LSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKY 91 (290)
T ss_pred HHHHHHHHhCCCcCEEEEC-Ccccc-ccc---------CCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHH
Confidence 45677888888 8888775 32111 000 0000012345556666543 6899877 4455543333 3
Q ss_pred HHHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCC-CcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 152 ALSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
+-.+|||+|++-.++.... +...-..|++ +.++. +.. ..++. .|+..+..+....+.++.
T Consensus 92 a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~-v~~~~~~lp-v~lYn---~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 92 ATELGYDCLSAVTPFYYKFSFPEIKHYYDT-IIAETGGLN-MIVYS---IPFLTGVNMGIEQFGELY 153 (290)
T ss_pred HHHhCCCEEEEeCCcCCCCCHHHHHHHHHH-HHhhCCCCC-EEEEe---CccccccCcCHHHHHHHh
Confidence 4569999999999877653 2222333333 33333 333 23453 245445566666666554
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 300 | ||||
| 2z6j_A | 332 | Crystal Structure Of S. Pneumoniae Enoyl-acyl Carri | 9e-18 | ||
| 3bo9_A | 326 | Crystal Structure Of Putative Nitroalkan Dioxygenas | 7e-17 | ||
| 2gjl_A | 328 | Crystal Structure Of 2-Nitropropane Dioxygenase Len | 2e-15 | ||
| 2z6i_A | 332 | Crystal Structure Of S. Pneumoniae Enoyl-acyl Carri | 6e-13 | ||
| 3bw4_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 4e-07 | ||
| 3bw2_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 9e-07 | ||
| 3bw3_A | 369 | Crystal Structures And Site-Directed Mutagenesis St | 9e-07 |
| >pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier Protein Reductase (fabk) In Complex With An Inhibitor Length = 332 | Back alignment and structure |
|
| >pdb|3BO9|A Chain A, Crystal Structure Of Putative Nitroalkan Dioxygenase (Tm0800) From Thermotoga Maritima At 2.71 A Resolution Length = 326 | Back alignment and structure |
|
| >pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Length = 328 | Back alignment and structure |
|
| >pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier Protein Reductase (fabk) Length = 332 | Back alignment and structure |
|
| >pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
| >pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
| >pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of Nitroalkane Oxidase From Streptomyces Ansochromogenes Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 4e-81
Identities = 85/327 (25%), Positives = 143/327 (43%), Gaps = 49/327 (14%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+L +Y I Q + ++ +L AV+ AGGLG++ + + ++ I K +SLT++P
Sbjct: 8 LLKIDYPIFQGGMAW-VADGDLAGAVSKAGGLGIIGGGNAP-KEVVKANIDKIKSLTDKP 65
Query: 66 FGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------- 116
FGV ++L P + + ++ E V V+ G + + H AG+ V+P
Sbjct: 66 FGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGN-PSKYMERFHEAGIIVIPVVPSVALAK 124
Query: 117 -------DGLI----------------SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153
D +I +L+ V I IP+IAAGGI D G A
Sbjct: 125 RMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAAAGF 181
Query: 154 SLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFS 213
LGA+ + +GTRFV ++ES AHP YK K+++ + T + G R ++
Sbjct: 182 MLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISA---QHFGHAVRAIKNQLTR 238
Query: 214 NWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIR 273
+++ + P +E AG + GD+D + AG+ GL+
Sbjct: 239 DFELAEKDAFKQEDP--------DLEIFEQMGAGALAKAVVHGDVDGGSVMAGQIAGLVS 290
Query: 274 EILPAGEVVKQLVEGAQLLVHTKFSGL 300
+ A E++K L GA + + S
Sbjct: 291 KEETAEEILKDLYYGAAKKIQEEASRW 317
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 9e-79
Identities = 93/317 (29%), Positives = 142/317 (44%), Gaps = 56/317 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
+L E+ I+ + P L AAV+ AGGLG++ + + PD LR I + R T++P
Sbjct: 22 LLEIEHPILMGGMAW-AGTPTLAAAVSEAGGLGIIGSGAMK-PDDLRKAISELRQKTDKP 79
Query: 66 FGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------- 116
FGV ++L P ++ +K + EKV V+ G + + E G KV+P
Sbjct: 80 FGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN-PTKYIRELKENGTKVIPVVASDSLAR 138
Query: 117 -------DGLI----------------SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153
D +I L+ V + +IP+IAAGGI D RG AA
Sbjct: 139 MVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV---NIPVIAAGGIADGRGMAAAF 195
Query: 154 SLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFS 213
+LGA+ + +GTRFVAS ES HP YK K+V K D G P RVL+TPF
Sbjct: 196 ALGAEAVQMGTRFVASVESDVHPVYKEKIV---KASIRDTVVTGAKLGHPARVLRTPFAR 252
Query: 214 NWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIR 273
+ + + L G++ GD++ G+ GLI
Sbjct: 253 KIQEMEF---------------ENPMQAEEMLVGSLRRAVVEGDLERGSFMVGQSAGLID 297
Query: 274 EILPAGEVVKQLVEGAQ 290
EI P ++++ +++ +
Sbjct: 298 EIKPVKQIIEDILKEFK 314
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 9e-77
Identities = 94/334 (28%), Positives = 138/334 (41%), Gaps = 59/334 (17%)
Query: 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP 65
G E+ I+Q + + E+ AAVANAGGL L A +P+ L I + R LT+RP
Sbjct: 11 TFGVEHPIMQGGMQW-VGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRP 69
Query: 66 FGVGVVLAFPHN-----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ---- 116
FGV + L E AI+ + V++ + + E + E GVKV+ +
Sbjct: 70 FGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND-PGEHIAEFRRHGVKVIHKCTAV 128
Query: 117 -----------DGLI------------------SLLPMVVDLIGDRDIPIIAAGGIVDAR 147
D + LLP + + +PIIA+GG D R
Sbjct: 129 RHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL---RVPIIASGGFADGR 185
Query: 148 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 207
G VAAL+LGA I +GTRF+A+ E HP K + D+ TD+ R+ RV
Sbjct: 186 GLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERS-TDLIMRS--LRNTARVA 242
Query: 208 QTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVP-NVTTTGDIDSMVMFAG 266
+ I A G ++G V GD D + AG
Sbjct: 243 RNAISQEVLAIEARGGA------------GYADIAALVSGQRGRQVYQQGDTDLGIWSAG 290
Query: 267 EGVGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 300
GLI + E+++ +VE A+ LV + G+
Sbjct: 291 MVQGLIDDEPACAELLRDIVEQARQLVRQRLEGM 324
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 3e-51
Identities = 90/362 (24%), Positives = 132/362 (36%), Gaps = 105/362 (29%)
Query: 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGV 68
F IVQAP+ +S P+L AAV AGGLG L A ++ D + I++ R LT RPFGV
Sbjct: 9 FPLPIVQAPMAGGVSVPQLAAAVCEAGGLGFL-AAGYKTADGMYQEIKRLRGLTGRPFGV 67
Query: 69 GVVLAFPH------------------------------------NENIKAILSEKVAVLQ 92
V + P + + +L + V V+
Sbjct: 68 NVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVS 127
Query: 93 VSWGEYSEELVLEAHSAGVKVVP------------------------------------- 115
+G E++ AG +
Sbjct: 128 FHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSS 187
Query: 116 -----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170
GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++
Sbjct: 188 EDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244
Query: 171 ESYAHPEYKRKLVEM--DKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQP 228
ES A +KR L + +T T F G P R L F
Sbjct: 245 ESGAPGPHKRALTDPLFARTRLTRAFT-----GRPARSLVNRFLREHGPYAPAAYPD--- 296
Query: 229 IIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 288
+H + + + A GD M ++AG+G + RE+ PAG +V+ L
Sbjct: 297 ------VHHLTSPLRKAA------AKAGDAQGMALWAGQGHRMAREL-PAGRLVEVLAAE 343
Query: 289 AQ 290
Sbjct: 344 LA 345
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 67/235 (28%)
Query: 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV---- 103
P R + + V FP + +I +L + W + + V
Sbjct: 368 PAEYRKMFDR--------LSV-----FPPSAHIPT------ILLSLIWFDVIKSDVMVVV 408
Query: 104 --LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161
L +S V+ P++ IS+ + ++L + IVD Y +
Sbjct: 409 NKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTF-----D 460
Query: 162 LGTRFVASEESY--AHPEYKRKLVEMDKTEYTDVFGRA----RW--------------PG 201
+ Y +H + L ++ E +F R+ G
Sbjct: 461 SDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 202 APHRVLQT-----PFFSNWKNIPAHENEVNQ-----PIIGRSTIHGIEKKIHRLA 246
+ LQ P+ N P +E VN P I + I + R+A
Sbjct: 519 SILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 37/188 (19%)
Query: 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTR----SLTERPFGVG 69
Q G + PE+VAA+A A A E D LR + +R
Sbjct: 24 CQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDES 83
Query: 70 VVLAFPHNENIKAILSEKVAVLQVSWGEYS-----EELVLEAHSAGVKVVPQ----DGLI 120
V P +++ A+ A++ V E L+ H + + D +
Sbjct: 84 PVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGL 143
Query: 121 SLLPMVVDLIG------------------------DRDIPIIAAGGIVDARGYVAALSLG 156
+ + D+IG D +IA G A+ G
Sbjct: 144 ACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYG 203
Query: 157 AQGICLGT 164
A + +G+
Sbjct: 204 AWAVTVGS 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 100.0 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 100.0 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 100.0 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 100.0 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 100.0 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.97 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.96 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.93 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.91 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.9 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.87 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.85 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.83 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.74 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.72 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.72 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.71 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.71 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.65 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.65 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.63 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.59 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.58 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.56 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.55 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.51 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.5 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.49 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.46 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.46 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.46 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.42 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.42 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.37 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.35 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.34 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.34 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.28 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.27 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.17 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.16 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.13 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.1 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.09 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.03 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.99 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.97 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.94 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.93 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 98.9 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.88 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.85 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.84 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.83 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.83 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.8 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.79 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.78 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.77 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.77 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.76 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.76 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.7 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.7 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.69 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.69 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.68 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.64 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.64 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.64 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 98.62 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.61 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.61 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.6 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.58 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.55 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.51 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.44 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.44 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.44 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.42 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.42 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.41 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.37 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.36 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.34 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.34 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.33 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.33 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.32 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.31 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.29 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.25 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.23 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 98.22 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.22 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.21 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.2 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 98.2 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.19 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.18 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.12 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.09 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.08 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.07 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.07 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.05 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.05 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 98.05 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.04 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.03 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.02 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.0 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.99 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.96 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.95 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.93 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.89 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.87 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.82 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.81 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.8 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.75 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.75 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.71 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.68 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.65 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.61 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.56 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.56 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.54 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 97.54 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.52 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.52 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.5 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.42 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.42 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.42 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.41 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.41 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 97.36 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.33 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.26 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.25 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.22 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.2 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.2 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.19 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.13 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.11 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.1 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.04 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.02 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.97 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 96.94 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.93 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.93 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 96.76 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 96.74 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 96.69 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.64 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 96.62 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 96.41 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.36 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 96.33 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.32 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 96.09 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 96.05 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.76 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 95.67 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 95.66 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.64 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 95.51 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.28 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 95.2 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 95.04 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 94.92 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 94.71 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 94.68 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 94.34 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.3 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 94.11 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 94.09 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 93.98 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 93.62 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 93.48 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 93.45 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 92.88 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 92.87 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 92.4 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 92.28 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 92.17 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 91.88 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 91.87 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 91.58 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 91.56 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 91.46 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 91.43 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 91.22 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 91.11 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 91.1 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 91.08 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 90.99 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 90.78 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 90.66 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 90.42 | |
| 2xij_A | 762 | Methylmalonyl-COA mutase, mitochondrial; isomerase | 90.3 | |
| 1ccw_A | 137 | Protein (glutamate mutase); coenzyme B12, radical | 89.9 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 89.83 | |
| 1req_A | 727 | Methylmalonyl-COA mutase; isomerase, intramolecula | 89.45 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 88.84 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 88.81 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 88.71 | |
| 2i2x_B | 258 | MTAC, methyltransferase 1; TIM barrel and helix bu | 88.23 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 88.19 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 87.99 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 87.9 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 87.8 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 87.05 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 86.99 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 86.57 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 86.1 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 86.0 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 85.62 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 85.27 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 84.75 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 84.27 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 84.16 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 84.15 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 84.02 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 84.01 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 83.99 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 83.59 | |
| 1y80_A | 210 | Predicted cobalamin binding protein; corrinoid, fa | 83.52 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 83.41 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 83.26 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 83.23 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 83.18 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 83.12 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 83.12 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 83.1 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 83.08 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.04 | |
| 3ezx_A | 215 | MMCP 1, monomethylamine corrinoid protein 1; N ter | 82.79 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 82.66 | |
| 3kp1_A | 763 | D-ornithine aminomutase E component; 5 aminomutase | 82.37 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 82.31 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 82.17 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 82.15 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 81.84 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 81.83 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 81.8 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 81.61 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 81.26 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 81.04 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 81.02 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 80.76 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 80.65 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 80.33 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 80.23 | |
| 1xrs_B | 262 | D-lysine 5,6-aminomutase beta subunit; TIM barrel, | 80.13 |
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=350.31 Aligned_cols=269 Identities=33% Similarity=0.530 Sum_probs=228.3
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIK 81 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~ 81 (300)
|+++|+++||||||||+ |+|+++|+.+|+++|++|++... +.++++++++++++|+.+++||+||++...+ ..+.++
T Consensus 19 ~~~~l~~~~Pii~apM~-gvs~~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~ 96 (326)
T 3bo9_A 19 VTDLLEIEHPILMGGMA-WAGTPTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVK 96 (326)
T ss_dssp HHHHHTCSSSEEECCCT-TTSCHHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHH
T ss_pred hHHhcCCCCCEEECCCC-CCCCHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHH
Confidence 67889999999999999 89999999999999999999874 6799999999999999999999999998554 467899
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHhh
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDLI 130 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~~ 130 (300)
.+++.++++|.+++|.| .++++.+++.|++++.. ...+.+++++++.+
T Consensus 97 ~~~~~g~d~V~l~~g~p-~~~~~~l~~~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~ 175 (326)
T 3bo9_A 97 VCIEEKVPVVTFGAGNP-TKYIRELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV 175 (326)
T ss_dssp HHHHTTCSEEEEESSCC-HHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC
T ss_pred HHHHCCCCEEEECCCCc-HHHHHHHHHcCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHc
Confidence 99999999999999985 78899999999888763 12567899999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecCh
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTP 210 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~ 210 (300)
++|||++|||.|++++.+++++||++|++||+|+.+.||.+++.||++++++.++++....+ ..|+|+|+|+|+
T Consensus 176 ---~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~---~~G~p~R~l~n~ 249 (326)
T 3bo9_A 176 ---NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKASIRDTVVTGA---KLGHPARVLRTP 249 (326)
T ss_dssp ---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCHHHHHHHHHCCTTCEEEECT---TTTCCEEEECCH
T ss_pred ---CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccccHHHHHHHHhcccccEEEecc---cCCCceEEEecH
Confidence 79999999999999999999999999999999999999999999999999987766444443 359999999999
Q ss_pred hhHhhhcCCCCcccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccccccCCCCCHHHHHHHHHHHHH
Q 022271 211 FFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQ 290 (300)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~~l~~e~~ 290 (300)
|+++|.+... ..++ ..++ +. ...++++..+||.|.+.+|+||++++|+++.|++|||++|++|++
T Consensus 250 ~~~~~~~~~~----~~~~-----~~~~----~~--~~~~~~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~e~~ 314 (326)
T 3bo9_A 250 FARKIQEMEF----ENPM-----QAEE----ML--VGSLRRAVVEGDLERGSFMVGQSAGLIDEIKPVKQIIEDILKEFK 314 (326)
T ss_dssp HHHHHHHHHH----HCHH-----HHHH----HH--TTHHHHHHTTCCTTTCCCBCCGGGGGCCSCBCHHHHHHHHHHHHH
T ss_pred HHHHhhhccC----CCHH-----HHHH----Hc--cchHHHHHHcCCcccceEEcccChhhcCCCCcHHHHHHHHHHHHH
Confidence 9999874310 0111 1111 10 111234567899999999999999999999999999999999999
Q ss_pred HHHHh
Q 022271 291 LLVHT 295 (300)
Q Consensus 291 ~~l~~ 295 (300)
+++++
T Consensus 315 ~~~~~ 319 (326)
T 3bo9_A 315 ETVEK 319 (326)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=345.65 Aligned_cols=275 Identities=32% Similarity=0.428 Sum_probs=227.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecC----CC-cH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA----FP-HN 77 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~----~~-~~ 77 (300)
|+++|+++|||||+||+ |+|+++|+.+|+++|++|++..+++.++++++++++++|+.+++||+||++.+ .+ ..
T Consensus 8 ~~~~l~~~~Pii~apM~-gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~ 86 (328)
T 2gjl_A 8 FTETFGVEHPIMQGGMQ-WVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYA 86 (328)
T ss_dssp HHHHHTCSSSEEECCCT-TTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHH
T ss_pred HHHHhCCCCCEEECCCC-CCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHH
Confidence 78999999999999998 89999999999999999999875445599999999999999999999999997 33 36
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----------------------------c-----ChhchHH
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----------------------------D-----GLISLLP 124 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----------------------------~-----~~~~ll~ 124 (300)
+.++.+.+.++++|.+++|.| .++++.+++.|++++.. . ..+.+++
T Consensus 87 ~~~~~~~~~g~d~V~~~~g~p-~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~ 165 (328)
T 2gjl_A 87 EYRAAIIEAGIRVVETAGNDP-GEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLP 165 (328)
T ss_dssp HHHHHHHHTTCCEEEEEESCC-HHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCc-HHHHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHH
Confidence 889999999999999999875 78899999999888763 0 2456788
Q ss_pred HHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCC
Q 022271 125 MVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPH 204 (300)
Q Consensus 125 ~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~ 204 (300)
++++.+ ++|||++|||.+++++.+++++|||+|++||+|+.+.||.+++.||++++++.++++..... ..|.|.
T Consensus 166 ~v~~~~---~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~---~~g~~~ 239 (328)
T 2gjl_A 166 AAANRL---RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERSTDLIMR---SLRNTA 239 (328)
T ss_dssp HHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSCHHHHHHHHHCCTTCEEEECG---GGTCCE
T ss_pred HHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCccccccHHHHHHHHhcccccEEEeec---cCCCce
Confidence 888776 79999999999999999999999999999999999999999999999999986665333332 248999
Q ss_pred ceecChhhHhhhcCCCCcccCCCcccccccccch-HHHHHHhhcccccccccCCcccceeeccccccccCCCCCHHHHHH
Q 022271 205 RVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGI-EKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVK 283 (300)
Q Consensus 205 R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~ 283 (300)
|+++|+|+++|.+.+.... ..++.. .+.. ...+ +++..+||.|.+.+|+||++++|+++.|++|||+
T Consensus 240 r~~~n~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~-------~~a~~~g~~~~~~~~aG~~~~~~~~~~~~~ei~~ 307 (328)
T 2gjl_A 240 RVARNAISQEVLAIEARGG-AGYADI----AALVSGQRG-------RQVYQQGDTDLGIWSAGMVQGLIDDEPACAELLR 307 (328)
T ss_dssp EEECSHHHHHHHHHHHTSC-CCGGGT----HHHHCHHHH-------HHHHHHCCTTSSCCBCCGGGGGCCCCCCHHHHHH
T ss_pred EEEcCHHHHHHHhhhhccC-CChHHH----HHHHhhHHH-------HHHHHcCCccceEEEcccchhhcCCCCCHHHHHH
Confidence 9999999999875322111 012210 0000 1112 2355789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 022271 284 QLVEGAQLLVHTKF 297 (300)
Q Consensus 284 ~l~~e~~~~l~~~~ 297 (300)
+|++|+++++++++
T Consensus 308 ~l~~e~~~~~~~~~ 321 (328)
T 2gjl_A 308 DIVEQARQLVRQRL 321 (328)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987344
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=341.81 Aligned_cols=275 Identities=29% Similarity=0.484 Sum_probs=228.4
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIK 81 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~ 81 (300)
|+++||++||||++||+ |+|+++|+.+++++|++|++..+ +.++++++++++++|+++++||+||++.+.+. .+.++
T Consensus 5 ~~~~l~~~~Pii~apM~-g~s~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~ 82 (332)
T 2z6i_A 5 ITELLKIDYPIFQGGMA-WVADGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVD 82 (332)
T ss_dssp HHHHHTCSSSEEECCCT-TTCCHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHH
T ss_pred hhHHhCCCCCEEeCCCC-CCCcHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHH
Confidence 78999999999999998 89999999999999999999875 67999999999999999999999999985444 77899
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-------------------------------cChhchHHHHHHhh
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------------------------------DGLISLLPMVVDLI 130 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------------------------------~~~~~ll~~v~~~~ 130 (300)
.+.+.++++|.+++|.| .++++.+++.|+.++.. ...+.+++++++.+
T Consensus 83 ~a~~~g~d~V~~~~g~p-~~~i~~l~~~g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~ 161 (332)
T 2z6i_A 83 LVIEEGVKVVTTGAGNP-SKYMERFHEAGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI 161 (332)
T ss_dssp HHHHTTCSEEEECSSCG-GGTHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC
T ss_pred HHHHCCCCEEEECCCCh-HHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhc
Confidence 99999999999999874 67888888888887753 12467889999887
Q ss_pred CCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecCh
Q 022271 131 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTP 210 (300)
Q Consensus 131 ~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~ 210 (300)
++|||++|||.|++++.+++++|||+|+|||+|+.++||.+++.||+++++++++++..... ..|+|.|+++|+
T Consensus 162 ---~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k~~~~~~~~~d~~~~~~---~~g~~~r~l~n~ 235 (332)
T 2z6i_A 162 ---SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISAQ---HFGHAVRAIKNQ 235 (332)
T ss_dssp ---SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHHHHHHHCCTTCEEEESG---GGTCCEEEECSH
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccccccHHHHHHHHhCCCcCEEEECC---cCCCcEEEEeCH
Confidence 79999999999999999999999999999999999999999999999999987666433222 248999999999
Q ss_pred hhHhhhcCCCC---cccCCCcccccccccchHHHHHHhhcccccccccCCcccceeeccccccccCCCCCHHHHHHHHHH
Q 022271 211 FFSNWKNIPAH---ENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 287 (300)
Q Consensus 211 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~~l~~ 287 (300)
|+++|.+.+.. .....++ .+++ +. ...++++..+||.|++.+|+||++++++++.|++||+++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~--~~~~~~a~~~g~~~~~~~~aG~~~~~~~~~~~~~ei~~~l~~ 304 (332)
T 2z6i_A 236 LTRDFELAEKDAFKQEDPDLE-----IFEQ----MG--AGALAKAVVHGDVDGGSVMAGQIAGLVSKEETAEEILKDLYY 304 (332)
T ss_dssp HHHHHHHHHHHHHTC---CCH-----HHHH----HH--TTHHHHHHTTCCTTTSCCBCCGGGGGCCCCBCHHHHHHHHHH
T ss_pred HHHHHHhhccccccccCCCHH-----HHHH----Hc--cchHHHHHHcCCcccceEecCcChhhcCCCCCHHHHHHHHHH
Confidence 99998753200 0000111 1111 10 111224557899999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 022271 288 GAQLLVHTKF 297 (300)
Q Consensus 288 e~~~~l~~~~ 297 (300)
|+++++++++
T Consensus 305 e~~~~~~~~~ 314 (332)
T 2z6i_A 305 GAAKKIQEEA 314 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998755
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=334.95 Aligned_cols=267 Identities=33% Similarity=0.540 Sum_probs=222.1
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCC-------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP------- 75 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~------- 75 (300)
|+++| +||||||||++|+|+++|+++|+++|++|+++. ++.++++++++|+++++++++|||||++.+.+
T Consensus 5 ~~~~~--~~Pii~apMaggvs~~~la~av~~aGglG~i~~-~~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~ 81 (369)
T 3bw2_A 5 LTDLF--PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAA-GYKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGA 81 (369)
T ss_dssp TTTSS--SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEEC-TTSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CH
T ss_pred hhhhC--cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCC-CCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHH
Confidence 56777 999999999845999999999999999999987 47899999999999999999999999998654
Q ss_pred -----------------------------cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----------
Q 022271 76 -----------------------------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ---------- 116 (300)
Q Consensus 76 -----------------------------~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~---------- 116 (300)
..+.++.+.+.++++|.+++|.|+.++++.+++.|+.++..
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~~g~~v~~~v~t~~~a~~a 161 (369)
T 3bw2_A 82 VEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRRAGTLTLVTATTPEEARAV 161 (369)
T ss_dssp HHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHCCCeEEEECCCHHHHHHH
Confidence 25678889999999999999988788999999888877642
Q ss_pred ---------c---------C--------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 117 ---------D---------G--------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 117 ---------~---------~--------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
. + ++.+++++++.+ ++|||++|||.|++++.+++++|||+|+|||
T Consensus 162 ~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~---~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs 238 (369)
T 3bw2_A 162 EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGT 238 (369)
T ss_dssp HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 0 1 156678888776 7999999999999999999999999999999
Q ss_pred ccccCcccCCCHHHHHHHHcCCC--cceEEEecccCCCCCCCceecChhhHhhhcCCCCcccCCCcccccccccchHHHH
Q 022271 165 RFVASEESYAHPEYKRKLVEMDK--TEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKI 242 (300)
Q Consensus 165 ~fl~t~Es~~~~~~k~~i~~a~~--t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (300)
+|+.++|+..++.||+.|+++.. +.++.. ..|+|.|+++|+|+++|..... ..+| .++.+...+
T Consensus 239 ~~~~~~e~~~~~~~k~~i~~~~~~~~~~~~~-----~~g~~~r~~~n~~~~~~~~~~~----~~~~-----~~~~~~~~~ 304 (369)
T 3bw2_A 239 AFLATDESGAPGPHKRALTDPLFARTRLTRA-----FTGRPARSLVNRFLREHGPYAP----AAYP-----DVHHLTSPL 304 (369)
T ss_dssp HHHTSTTCCCCHHHHHHTTCGGGCCEEEEST-----TTSSCEEEECCHHHHHHGGGCC----SCTT-----HHHHHHHHH
T ss_pred HHhCCcccCccHHHHHHHHhCcCCCEEEEec-----cCCCcEEEEeCHHHHHhhccCC----CChH-----HHHHHHHHH
Confidence 99999999999999999999754 333322 3489999999999999875421 1222 222223333
Q ss_pred HHhhcccccccccCCcccceeeccccccccCCCCCHHHHHHHHHHHHHHHHHhh
Q 022271 243 HRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTK 296 (300)
Q Consensus 243 ~~~~~~~~~a~~~gd~~~~~~~aGq~~~~i~~i~~a~eiv~~l~~e~~~~l~~~ 296 (300)
++ .+...||.|++.+|+||+++++++ .|++|||++|++|+++++++.
T Consensus 305 ~~------~~~~~g~~~~~~~~aGq~~~~~~~-~~~~eiv~~l~~e~~~~~~~~ 351 (369)
T 3bw2_A 305 RK------AAAKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLAAELAEARTAL 351 (369)
T ss_dssp HH------HHHHHTCGGGSCCBCCTTGGGCCC-SCHHHHHHHHHHHHHHHHHHT
T ss_pred HH------HHHhcCChhhEeEEcccccCcCCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 32 234679999999999999999998 899999999999999988653
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=347.48 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=208.4
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc----
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH---- 76 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~---- 76 (300)
|++++| ++|||||||++++++++||+||+|+||+|+|+.+++++++.++++|+++|+.+ ++||+||++...+.
T Consensus 576 ~t~~lg-~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~ 654 (2060)
T 2uva_G 576 MSRLLG-VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGW 654 (2060)
T ss_dssp HHHHHT-SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHH
T ss_pred hhhccc-cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHhhcccCCCeEecccccCcccchh
Confidence 788999 99999999986799999999999999999994335789999999999999998 79999999987665
Q ss_pred -HHHHHHHHHcCCcE--EEEcCCCCcH-HHHHHHHHCCCeEeec-----------------------------------c
Q 022271 77 -NENIKAILSEKVAV--LQVSWGEYSE-ELVLEAHSAGVKVVPQ-----------------------------------D 117 (300)
Q Consensus 77 -~~~~~~~~e~g~~~--i~~~~G~~~~-~~v~~~~~~G~~v~~~-----------------------------------~ 117 (300)
.+.++.++++|+++ |++++|.|.. ++++.+++.|+.+++. .
T Consensus 655 ~~~~~~~~~~~gv~i~gv~~~~G~p~~e~~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~ 734 (2060)
T 2uva_G 655 QIPLLGRLRADGVPIEGLTIGAGVPSIEVANEYIQTLGIRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHH 734 (2060)
T ss_dssp HHHHHHHHHTTTCCEEEEEEESSCCCHHHHHHHHHHSCCSEEEECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSC
T ss_pred HHHHHHHHHHcCCCcceEeecCCCCCHHHHHHHHHHcCCeEEEecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCC
Confidence 36789999999999 9999998764 5778888888776653 1
Q ss_pred -------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-----------HCCCcEEEeccccccCcccCCCHHHH
Q 022271 118 -------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYAHPEYK 179 (300)
Q Consensus 118 -------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-----------~lGAdgV~~GT~fl~t~Es~~~~~~k 179 (300)
+++.++|+|++.+ ++|||++|||+|+++++++| +||||||||||+|++|+||++|+.||
T Consensus 735 g~~d~~~~~l~lv~~i~~~~---~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~K 811 (2060)
T 2uva_G 735 SFEDFHQPILLMYSRIRKCS---NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQAK 811 (2060)
T ss_dssp CSCCSHHHHHHHHHHHHTST---TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHHH
T ss_pred CcccccchHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCHHHH
Confidence 1466899999987 89999999999999999999 99999999999999999999999999
Q ss_pred HHHHcCCCcce-------------EEEecccCCCCCCCceecChhhHhhhcCCCCcccCCCcccccccccchHHHHHHhh
Q 022271 180 RKLVEMDKTEY-------------TDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLA 246 (300)
Q Consensus 180 ~~i~~a~~t~~-------------t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (300)
++|++++++|. ...+. .+.|.|+|+|+|+|++.|.+++... ..+|.. .+.++... +++..
T Consensus 812 ~~lv~a~~~dt~~w~~~~~~~~ggv~t~~--s~~G~p~R~l~n~~~~~~~~~~~~~--~~~~~~--~~~~~l~~-~~~~~ 884 (2060)
T 2uva_G 812 QAIVDAPGVDDDQWENTYKRPTGGVITVL--SEMGEPIHKLATRGVLFWKELDDKI--FSLDRS--KRVAELKK-RRDYI 884 (2060)
T ss_dssp HHHHTSCCCCSTTSGGGGTSCCTTEEEEE--CSSSCEEEEECCHHHHHHHHHHHHT--TTSCHH--HHHHHHHH-SHHHH
T ss_pred HHHHhCCcccccchhccccCCCceEEEec--ccCCCCeEEEeCHHHHHHHhhhhcc--cCCChH--HHHHHHHH-HHHHH
Confidence 99999876553 22211 1359999999999999987542210 111200 00111111 11110
Q ss_pred cccccccccCCcccce---eeccccccccCCCCCHHHHHHHHHHHH
Q 022271 247 GTVPNVTTTGDIDSMV---MFAGEGVGLIREILPAGEVVKQLVEGA 289 (300)
Q Consensus 247 ~~~~~a~~~gd~~~~~---~~aGq~~~~i~~i~~a~eiv~~l~~e~ 289 (300)
.....||.+.+. +++||++++ ++.|++||+++|++++
T Consensus 885 ----~~~~~~d~~~~~~G~~~~G~~~~~--~~~~~~eiv~~l~~~~ 924 (2060)
T 2uva_G 885 ----IKKLNDDFQKVWFGRNSAGEPVDL--EDMTYAEVVHRMVELM 924 (2060)
T ss_dssp ----HHHHHHHSSSEETTBCTTSCBCCG--GGCBHHHHHHHHHHHH
T ss_pred ----HHhcCCchhhhhhheeecccccCC--CCCcHHHHHHHHHHHh
Confidence 000234444333 456666677 7899999999999875
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=335.67 Aligned_cols=211 Identities=19% Similarity=0.246 Sum_probs=177.3
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC--CcEEeeeecCCCc----
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPH---- 76 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~--~P~gvnl~~~~~~---- 76 (300)
|+++|| +||||||||++++++++||+|||||||+|+|+++++.+++.++++|+++|++|+ +|||||++...+.
T Consensus 583 ~t~llg-~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~ 661 (2051)
T 2uv8_G 583 FSKLIG-RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQW 661 (2051)
T ss_dssp HHHHHS-SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHHH
T ss_pred HHHhhC-ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhhh
Confidence 789999 699999999865679999999999999999966568899999999999999986 7999999987654
Q ss_pred -HHHHHHHHHcCCcE--EEEcCCCCc-HHHHHHHHHCCCeEeec-----------------------------------c
Q 022271 77 -NENIKAILSEKVAV--LQVSWGEYS-EELVLEAHSAGVKVVPQ-----------------------------------D 117 (300)
Q Consensus 77 -~~~~~~~~e~g~~~--i~~~~G~~~-~~~v~~~~~~G~~v~~~-----------------------------------~ 117 (300)
.+.++.++++|+++ |.+++|.|. +..++.++..|+++++. .
T Consensus 662 ~~~~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~i~~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~ 741 (2051)
T 2uv8_G 662 GIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHH 741 (2051)
T ss_dssp HHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEEC
T ss_pred hHHHHHHHHHcCCCcceEEecCCCCchhhHHHHHHHcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCC
Confidence 36789999999999 999999875 33444455557776652 1
Q ss_pred C-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH-----------HCCCcEEEeccccccCcccCCCHHHH
Q 022271 118 G-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYAHPEYK 179 (300)
Q Consensus 118 ~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal-----------~lGAdgV~~GT~fl~t~Es~~~~~~k 179 (300)
| ++.++|+|++++ +|||||+|||+||++++++| +||||||+|||||++|+||.+|++||
T Consensus 742 g~~d~~~~~l~l~~~v~~~~---~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~K 818 (2051)
T 2uv8_G 742 SFEDAHTPMLQMYSKIRRHP---NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAK 818 (2051)
T ss_dssp CSCCSSHHHHHHHHHHTTCT---TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHHH
T ss_pred CcccccccHHHHHHHHHhcC---CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHHH
Confidence 1 455799999998 89999999999999999999 89999999999999999999999999
Q ss_pred HHHHcCCCcce-------------EEEecccCCCCCCCceecChhhHhhhcCC
Q 022271 180 RKLVEMDKTEY-------------TDVFGRARWPGAPHRVLQTPFFSNWKNIP 219 (300)
Q Consensus 180 ~~i~~a~~t~~-------------t~~~~~~~~~g~~~R~l~n~~~~~~~~~~ 219 (300)
++|+++++++. ...... --|.|.|.|+|++++.|.+++
T Consensus 819 ~~iv~a~~~d~~~w~~~~~~~~gG~~~~~s--~~g~~~r~l~~~~~~~~~~~~ 869 (2051)
T 2uv8_G 819 KCIAACTGVPDDKWEQTYKKPTGGIVTVRS--EMGEPIHKIATRGVMLWKEFD 869 (2051)
T ss_dssp HHHHTCCCCCGGGGGGGGTSCCSSEEEEEC--TTSCEEEEECCHHHHHHHHHH
T ss_pred HHHHhCCCCcccchhhccccCcCcEEEEec--cCCCcHHHhccHHHHHHHHhH
Confidence 99999876552 111110 137899999999999998764
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-32 Score=308.50 Aligned_cols=207 Identities=23% Similarity=0.245 Sum_probs=171.0
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCcH---
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPHN--- 77 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~~--- 77 (300)
|+++|| +||||||||++++|+++||+|||||||+|+|+++++.+++.++++|+++|+++ ++||+||++...+..
T Consensus 421 ~~~~lg-~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~ 499 (3089)
T 3zen_D 421 FTRLTG-RSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKL 499 (3089)
T ss_dssp HHHHHS-SCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHH
T ss_pred hhhhcC-CCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhh
Confidence 789999 99999999996678999999999999999997767779999999999999998 789999999876643
Q ss_pred -----HHHHHHHHcCCc--EEEEcCCCCc----HHHHHHHHHCCCeEee-c-----------------------------
Q 022271 78 -----ENIKAILSEKVA--VLQVSWGEYS----EELVLEAHSAGVKVVP-Q----------------------------- 116 (300)
Q Consensus 78 -----~~~~~~~e~g~~--~i~~~~G~~~----~~~v~~~~~~G~~v~~-~----------------------------- 116 (300)
+.++.++++|++ .|++++|.|+ .++++.+|++|+++++ .
T Consensus 500 ~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~ 579 (3089)
T 3zen_D 500 QVGGKRLVQRARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGG 579 (3089)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCS
T ss_pred ccCHHHHHHHHHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCC
Confidence 678999999955 5888889975 6788888888887766 2
Q ss_pred --------cChhchHHHHHHhhCC-CCCcEEEccCCCChHHHHHHH-----------HCCCcEEEeccccccCcccCCCH
Q 022271 117 --------DGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAAL-----------SLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 117 --------~~~~~ll~~v~~~~~~-~~iPViaaGGI~~g~~v~aal-----------~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
..+..+++++.+.++. .++|||++|||+|+++++++| ++|||||||||+|++|.||.+|+
T Consensus 580 eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea~~s~ 659 (3089)
T 3zen_D 580 RAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEATTSP 659 (3089)
T ss_dssp SSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTSCBCH
T ss_pred CcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcccCCCH
Confidence 1255677444443321 389999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHcCCCc-----------ceEEEecccCCCCCCCceecChhhH
Q 022271 177 EYKRKLVEMDKT-----------EYTDVFGRARWPGAPHRVLQTPFFS 213 (300)
Q Consensus 177 ~~k~~i~~a~~t-----------~~t~~~~~~~~~g~~~R~l~n~~~~ 213 (300)
.||++|++++++ ++....+. .|.|.|.++|++++
T Consensus 660 ~~K~~l~~a~~~~~~~~~g~~a~g~~~~~s~---~g~~~~~~~n~~~~ 704 (3089)
T 3zen_D 660 QVKQLLVETKGTEAWVGAGKAANGMASGRSQ---LGADIHEIDNAASR 704 (3089)
T ss_dssp HHHHHHHHCCCCSSCCCSSSCBTTEEEEECT---TSCEEEEETTTCCH
T ss_pred HHHHHHHhCCCcccccccCCccCCEEEeeec---cCCchHhhhhhhHH
Confidence 999999998773 22333332 36788888886544
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=231.86 Aligned_cols=172 Identities=18% Similarity=0.268 Sum_probs=136.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC----CcEE--eeeecC---
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFG--VGVVLA--- 73 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~----~P~g--vnl~~~--- 73 (300)
|++.+++++|||||||+ ++|+++||+|||++||||+|+. ++++++++++|+++|+.++ +||+ +||+..
T Consensus 35 lt~~l~l~~PIi~a~M~-~Vs~~~lA~Ava~aGGlGvi~~--~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~ 111 (400)
T 3ffs_A 35 LTKNVSLKIPLISSAMD-TVTEHLMAVGMARLGGIGIIHK--NMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTD 111 (400)
T ss_dssp SSSSCEESSSEEECSCT-TTCSSHHHHHHHTTTCEEEECS--SSCHHHHHHHHHHHHCCC--------------------
T ss_pred hhcccCCCCCEEeCCCC-CcCcHHHHHHHHHCCCEEEeCC--CCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCC
Confidence 67889999999999999 8999999999999999999996 5799999999999999876 7998 888611
Q ss_pred ------------CC-------------------cHHHHHHHHHcCCcEEEE--cCCCCc--HHHHHHHHHC-CCeEee-c
Q 022271 74 ------------FP-------------------HNENIKAILSEKVAVLQV--SWGEYS--EELVLEAHSA-GVKVVP-Q 116 (300)
Q Consensus 74 ------------~~-------------------~~~~~~~~~e~g~~~i~~--~~G~~~--~~~v~~~~~~-G~~v~~-~ 116 (300)
.| ..+.++.++++|+++|++ ++|.+. .+.++++++. ++.++. .
T Consensus 112 ~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~ 191 (400)
T 3ffs_A 112 GKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN 191 (400)
T ss_dssp -----------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee
Confidence 00 147899999999999987 667643 3566777765 877763 1
Q ss_pred -------------------c------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 -------------------D------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 -------------------~------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
. +.+.++++++++++..++|||++|||.+++|++++|++|||+
T Consensus 192 V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~ 271 (400)
T 3ffs_A 192 VVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASS 271 (400)
T ss_dssp ECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSE
T ss_pred cCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCE
Confidence 1 245678888887644479999999999999999999999999
Q ss_pred EEeccccccCcccCCCHH
Q 022271 160 ICLGTRFVASEESYAHPE 177 (300)
Q Consensus 160 V~~GT~fl~t~Es~~~~~ 177 (300)
|+|||+|+.|+||+++..
T Consensus 272 V~vGt~f~~t~Es~~~~~ 289 (400)
T 3ffs_A 272 VMIGSILAGTEESPGEKE 289 (400)
T ss_dssp EEECGGGTTBTTSSCCEE
T ss_pred EEEChHHhcCCCCCchhh
Confidence 999999999999999854
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=206.32 Aligned_cols=170 Identities=22% Similarity=0.364 Sum_probs=136.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeec--CCCcHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL--AFPHNENI 80 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~--~~~~~~~~ 80 (300)
|++.+++++|||++||+ ++|+++||.+++++||+|++.. + ++++++.++++++|+.. ++.||+.. .....+.+
T Consensus 39 lt~~~~l~~Pii~apM~-~vs~~~lA~avA~aGGlg~i~~-~-~s~e~~~~~i~~vk~~~--~l~vga~vg~~~~~~~~~ 113 (366)
T 4fo4_A 39 LTKNIALNIPMVSASMD-TVTEARLAIALAQEGGIGFIHK-N-MSIEQQAAQVHQVKISG--GLRVGAAVGAAPGNEERV 113 (366)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS-S-SCHHHHHHHHHHHHTTT--SCCCEEECCSCTTCHHHH
T ss_pred cccccccCCCEEeCCCC-CCChHHHHHHHHHcCCceEeec-C-CCHHHHHHHHHHHHhcC--ceeEEEEeccChhHHHHH
Confidence 56788999999999999 8999999999999999999986 3 69999999999999864 44455443 33458899
Q ss_pred HHHHHcCCcEEEE--cCCCCcHHH---HHHHHHC--CCeEeec--------------------c----------------
Q 022271 81 KAILSEKVAVLQV--SWGEYSEEL---VLEAHSA--GVKVVPQ--------------------D---------------- 117 (300)
Q Consensus 81 ~~~~e~g~~~i~~--~~G~~~~~~---v~~~~~~--G~~v~~~--------------------~---------------- 117 (300)
+.++++|+++|++ +.|. ++.+ ++++++. ++.++.. .
T Consensus 114 ~~lieaGvd~I~idta~G~-~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~ 192 (366)
T 4fo4_A 114 KALVEAGVDVLLIDSSHGH-SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGV 192 (366)
T ss_dssp HHHHHTTCSEEEEECSCTT-SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCC
T ss_pred HHHHhCCCCEEEEeCCCCC-CHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCc
Confidence 9999999999987 4454 3433 4456554 6665431 1
Q ss_pred --ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHH
Q 022271 118 --GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 118 --~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~ 178 (300)
+.+.++++++++.+..++|||++|||.++++++++|++|||+|+|||+|+.|+||+.+..+
T Consensus 193 g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~ 255 (366)
T 4fo4_A 193 GVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVIL 255 (366)
T ss_dssp CCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEE
T ss_pred ccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhh
Confidence 2345677777654333799999999999999999999999999999999999999998654
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=199.80 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=137.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~ 82 (300)
|++.+++++||+++||+ ++++++||.+++++||+|++.. .++++++.++++++|+.++.|+++|+.... .+.++.
T Consensus 38 l~~~~~l~~Pii~apM~-~vt~~~lA~avA~~GGlgii~~--~~s~e~~~~~I~~vk~~~~~pvga~ig~~~--~e~a~~ 112 (361)
T 3khj_A 38 LTKNVSLKIPLISSAMD-TVTEHLMAVGMARLGGIGIIHK--NMDMESQVNEVLKVKNSGGLRVGAAIGVNE--IERAKL 112 (361)
T ss_dssp SSSSCEESSSEEECSST-TTCSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHHTTCCCCEEEECTTC--HHHHHH
T ss_pred cccccccCCCEEeecCC-CCCcHHHHHHHHHcCCCeEEec--CCCHHHHHHHHHHHHhccCceEEEEeCCCH--HHHHHH
Confidence 56778899999999999 8999999999999999999986 479999999999999988999999997754 788999
Q ss_pred HHHcCCcEEEE--cCCCCc--HHHHHHHHHC-CCeEee-c-------------------------------------cCh
Q 022271 83 ILSEKVAVLQV--SWGEYS--EELVLEAHSA-GVKVVP-Q-------------------------------------DGL 119 (300)
Q Consensus 83 ~~e~g~~~i~~--~~G~~~--~~~v~~~~~~-G~~v~~-~-------------------------------------~~~ 119 (300)
++++++++|.+ +.|.+. .+.++++++. ++.++. . .+.
T Consensus 113 l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 113 LVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp HHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred HHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCc
Confidence 99999999986 345431 1344544443 777664 1 123
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+..++++.++.+..++|||++|||.+++|+.+++++|||+|++||+|+.++||+.+.
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~ 249 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEK 249 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEE
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcch
Confidence 445666655432127999999999999999999999999999999999999999764
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=193.33 Aligned_cols=239 Identities=17% Similarity=0.254 Sum_probs=159.1
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc---------------------
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--------------------- 62 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--------------------- 62 (300)
.+.+++++||+++||+ ++++++|+.+++++|++|+++. +.+++++..++.++++.+
T Consensus 36 ~~g~~l~~Pii~Apm~-~~~~~ela~a~a~aGglg~i~~--~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 112 (404)
T 1eep_A 36 TKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTA 112 (404)
T ss_dssp SSSCEESSSEEECCCT-TTCSHHHHHHHHHHTSEEEECS--SSCHHHHHHHHHHHHTCC---------------------
T ss_pred cCCcccCCCEEeCCCC-CCCCHHHHHHHHHCCCEEEECC--CCCHHHHHHHHHHHHhhccCCCceecccccccccccccc
Confidence 3345689999999999 7999999999999999999984 479999988888776532
Q ss_pred -----------------CCc-----------EEeeeecCCCcHHHHHHHHHcCCcEEEE--cCCCCc--HHHHHHHHHC-
Q 022271 63 -----------------ERP-----------FGVGVVLAFPHNENIKAILSEKVAVLQV--SWGEYS--EELVLEAHSA- 109 (300)
Q Consensus 63 -----------------~~P-----------~gvnl~~~~~~~~~~~~~~e~g~~~i~~--~~G~~~--~~~v~~~~~~- 109 (300)
+.| +++|+.......+.++.+++.|+++|.+ +.|.|. .++++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~ 192 (404)
T 1eep_A 113 KQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKY 192 (404)
T ss_dssp -----------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCCChhHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 234 5788765444567788889999999987 456541 3455666665
Q ss_pred -CCeEee-c-------------------c------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 110 -GVKVVP-Q-------------------D------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 110 -G~~v~~-~-------------------~------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
++.++. . . +.+..++++.+.++..++|||++|||.+++|+.
T Consensus 193 ~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~ 272 (404)
T 1eep_A 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVV 272 (404)
T ss_dssp TTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHH
T ss_pred CCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHH
Confidence 767663 1 1 123456677765543479999999999999999
Q ss_pred HHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhcCCCCcccCCCccc
Q 022271 151 AALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPII 230 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~ 230 (300)
+++++|||+|++||+|+.++||+.+..||+- .....+ | |.-.....+ .
T Consensus 273 ~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g-------~~~k~~----~-g~~~~g~~~-------~------------- 320 (404)
T 1eep_A 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNG-------KKFKSY----V-GMGSISAMK-------R------------- 320 (404)
T ss_dssp HHHHHTCSEEEECHHHHTBTTSSSCEEEETT-------EEEEC-------------------------------------
T ss_pred HHHHcCCCHHhhCHHHhcCCCCCcchhhhCC-------eEEeec----C-CCCCHHHHh-------h-------------
Confidence 9999999999999999999999999988871 101111 0 111000000 0
Q ss_pred ccccccchHHHHHHhhcccccccccCCc-ccceeeccccccccCCCCCHHHHHHHHHHHHHHHHH
Q 022271 231 GRSTIHGIEKKIHRLAGTVPNVTTTGDI-DSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVH 294 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~a~~~gd~-~~~~~~aGq~~~~i~~i~~a~eiv~~l~~e~~~~l~ 294 (300)
+ .. ..+..||. +...+..++..++|..+.+++++++.|.+|.+..+.
T Consensus 321 g---------~~--------~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~ 368 (404)
T 1eep_A 321 G---------SK--------SRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMG 368 (404)
T ss_dssp -----------------------------------------CEECCBCHHHHHHHHHHHHHHHHH
T ss_pred c---------cc--------cchhcccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHH
Confidence 0 00 01122332 334456778888999999999999999999888753
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=182.58 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=125.4
Q ss_pred cccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHH
Q 022271 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAIL 84 (300)
Q Consensus 5 ~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~ 84 (300)
+.+++++||+++||+ +.++++||+|++++|++|+++. + .++++..+.+++-.... .++++++-......+.++.++
T Consensus 52 ~~~~l~~PIi~ApM~-~~~~~~lA~Ava~~Gglg~i~~-~-~s~e~~~~~i~~~p~~l-~~v~~~~g~~~~~~~~~~~l~ 127 (351)
T 2c6q_A 52 KQTYSGVPIIAANMD-TVGTFEMAKVLCKFSLFTAVHK-H-YSLVQWQEFAGQNPDCL-EHLAASSGTGSSDFEQLEQIL 127 (351)
T ss_dssp CCEEEECCEEECSST-TTSCHHHHHHHHHTTCEEECCT-T-CCHHHHHHHHHHCGGGC-TTEEEEECSSHHHHHHHHHHH
T ss_pred cCccccCCEEECCCC-CCCcHHHHHHHHHCCCEEEEcC-C-CCHHHHHHHHhhCchhh-heeEeecCCChHHHHHHHHHH
Confidence 467899999999999 7999999999999999999987 4 57877777665422221 356666533222345677777
Q ss_pred Hc--CCcEEEEc--CCCCc--HHHHHHHHHC--CCeEeec--------------------------------------cC
Q 022271 85 SE--KVAVLQVS--WGEYS--EELVLEAHSA--GVKVVPQ--------------------------------------DG 118 (300)
Q Consensus 85 e~--g~~~i~~~--~G~~~--~~~v~~~~~~--G~~v~~~--------------------------------------~~ 118 (300)
+. ++++++++ +|.+. .+.++++++. ++.++.. .+
T Consensus 128 ~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 128 EAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYP 207 (351)
T ss_dssp HHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCC
T ss_pred hccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCcc
Confidence 77 89988764 45432 2355666554 6665421 01
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~ 178 (300)
++..++++.++++..++|||++|||.++.|++++|++|||+|+|||+|+.+.||+++..+
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~ 267 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIE 267 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhh
Confidence 345667777665323799999999999999999999999999999999999999988743
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-21 Score=177.03 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=121.0
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
+++||++|||. ++++++||.|++++|++|+++. +.+++++.+++++.+. ++++++-......+.++.++++|+
T Consensus 41 l~~Pii~ApM~-~vte~~lA~A~a~~Gg~gvi~~--~~s~ee~~~~i~~~~~----~~~~~~g~~~~~~e~~~~a~~aGv 113 (361)
T 3r2g_A 41 LNLPVISANMD-TITESNMANFMHSKGAMGALHR--FMTIEENIQEFKKCKG----PVFVSVGCTENELQRAEALRDAGA 113 (361)
T ss_dssp ESSCEEECCST-TTCSHHHHHHHHHTTCEEBCCS--CSCHHHHHHHHHTCCS----CCBEEECSSHHHHHHHHHHHHTTC
T ss_pred cCCCEEECCCC-CchHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHhhcce----EEEEEcCCCHHHHHHHHHHHHcCC
Confidence 68999999998 8999999999999999999986 3799988887776543 455554333334678999999999
Q ss_pred cEEEEc--CCCCc--HHHHHHHHHC--CCeEeec------------------------cCh-----------hchHHHHH
Q 022271 89 AVLQVS--WGEYS--EELVLEAHSA--GVKVVPQ------------------------DGL-----------ISLLPMVV 127 (300)
Q Consensus 89 ~~i~~~--~G~~~--~~~v~~~~~~--G~~v~~~------------------------~~~-----------~~ll~~v~ 127 (300)
++|.+. .|.+. .+.++.+++. ++.++.. .+. ...+..+.
T Consensus 114 dvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~ 193 (361)
T 3r2g_A 114 DFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQ 193 (361)
T ss_dssp CEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHH
T ss_pred CEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHH
Confidence 999884 45432 2567777764 6776651 010 11333444
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+..+..+ |||++|||.+++|+.++|++|||+|+|||+|+.++||+.+-
T Consensus 194 ~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~ 241 (361)
T 3r2g_A 194 DCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEV 241 (361)
T ss_dssp HHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCE
T ss_pred HHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCcee
Confidence 4432112 99999999999999999999999999999999999999873
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=173.72 Aligned_cols=164 Identities=19% Similarity=0.243 Sum_probs=126.2
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcC
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g 87 (300)
.+++||+++||+ ++|+++|+++++++|++|++... +++.+++.++++++. +.|+++|+-......+.++.+.+.+
T Consensus 44 ~l~~Pi~~a~ma-g~s~~~la~a~~~~gg~g~~~~~---~~~~~~~~i~~~~~~-g~~v~v~~g~~~~~~~~a~~~~~~g 118 (336)
T 1ypf_A 44 KFKLPVVPANMQ-TIIDERIATYLAENNYFYIMHRF---QPEKRISFIRDMQSR-GLIASISVGVKEDEYEFVQQLAAEH 118 (336)
T ss_dssp EESSSEEECSST-TTCCHHHHHHHHHTTCCCCCCCS---SGGGHHHHHHHHHHT-TCCCEEEECCSHHHHHHHHHHHHTT
T ss_pred EecCcEEECCCC-CCChHHHHHHHHhCCCEEEecCC---CCHHHHHHHHHHHhc-CCeEEEeCCCCHHHHHHHHHHHhcC
Confidence 378999999999 89999999999999999998752 556677778887753 5589999532211235577788888
Q ss_pred --CcEEEEcC--CCCc--HHHHHHHHHC--CCeEeec--------------------c------------------C--h
Q 022271 88 --VAVLQVSW--GEYS--EELVLEAHSA--GVKVVPQ--------------------D------------------G--L 119 (300)
Q Consensus 88 --~~~i~~~~--G~~~--~~~v~~~~~~--G~~v~~~--------------------~------------------~--~ 119 (300)
++++.++. |.+. .+.++++++. +..++.. . + +
T Consensus 119 ~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~ 198 (336)
T 1ypf_A 119 LTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ 198 (336)
T ss_dssp CCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhH
Confidence 88887643 4432 3556666553 4544421 0 1 5
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 179 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k 179 (300)
+.+++++++++ ++|||++|||.++.|+.++|++|||+|++||+|+.|.||+++..+|
T Consensus 199 ~~~l~~v~~~~---~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~ 255 (336)
T 1ypf_A 199 LAALRWCAKAA---SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEK 255 (336)
T ss_dssp HHHHHHHHHTC---SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC--
T ss_pred HHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeee
Confidence 77888998887 7999999999999999999999999999999999999999998776
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=159.38 Aligned_cols=173 Identities=20% Similarity=0.331 Sum_probs=127.0
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--------------------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-------------------- 62 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-------------------- 62 (300)
|++.+++++||+++||. .+|..+|+.++++.||+|+|+. + +++++..+++++++...
T Consensus 36 lt~~i~l~iPivsa~Md-tVTe~~ma~a~a~~GGiGvI~~-n-~s~e~qa~~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~ 112 (496)
T 4fxs_A 36 LTKNIALNIPMVSASMD-TVTEARLAIALAQEGGIGFIHK-N-MSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVM 112 (496)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHHTCEEEECS-S-SCHHHHHHHHHHHHHCCC--CBCCCCBCSSSBHHHHH
T ss_pred eccccccCCCceecCcc-hhhHHHHHHHHHHcCCcceecC-C-CCHHHHHHHHHhccccccccccCceEECCCCCHHHHH
Confidence 67788899999999998 8999999999999999999986 4 68888888888775421
Q ss_pred -----------------CCcEEe------------------------eee------------------------------
Q 022271 63 -----------------ERPFGV------------------------GVV------------------------------ 71 (300)
Q Consensus 63 -----------------~~P~gv------------------------nl~------------------------------ 71 (300)
++++|+ +++
T Consensus 113 ~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G 192 (496)
T 4fxs_A 113 ELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192 (496)
T ss_dssp HHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTS
T ss_pred HHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence 011111 000
Q ss_pred ------c-----------------------------CCCcHHHHHHHHHcCCcEEEEcCCCC-cH---HHHHHHHHC--C
Q 022271 72 ------L-----------------------------AFPHNENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSA--G 110 (300)
Q Consensus 72 ------~-----------------------------~~~~~~~~~~~~e~g~~~i~~~~G~~-~~---~~v~~~~~~--G 110 (300)
. .....+.++.+++.|+++|.+....+ ++ +.++++++. +
T Consensus 193 ~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~ 272 (496)
T 4fxs_A 193 QLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPH 272 (496)
T ss_dssp BCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTT
T ss_pred CEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCC
Confidence 0 00125678889999999998865432 12 444444442 3
Q ss_pred CeEeec--------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHH
Q 022271 111 VKVVPQ--------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 111 ~~v~~~--------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aa 152 (300)
+.++.. .+.+.++++++++++..++|||++|||.+++|++++
T Consensus 273 ~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~ka 352 (496)
T 4fxs_A 273 LEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKA 352 (496)
T ss_dssp CCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred ceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHH
Confidence 333221 134567888888764347999999999999999999
Q ss_pred HHCCCcEEEeccccccCcccCCCHHH
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~ 178 (300)
+++|||+|++||+|+.|.||+.+..+
T Consensus 353 la~GAd~V~iGs~f~~t~Espg~~~~ 378 (496)
T 4fxs_A 353 IAAGASCVMVGSMFAGTEEAPGEVIL 378 (496)
T ss_dssp HHTTCSEEEESTTTTTBTTSSSCCEE
T ss_pred HHcCCCeEEecHHHhcCCCCCcceee
Confidence 99999999999999999999887433
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=155.21 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=122.1
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh---------------------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL--------------------- 61 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~--------------------- 61 (300)
|++.+++++||+++||. .++..+|+.+++++||+|+|.. + ++.++..+++++++..
T Consensus 60 lt~~i~l~iPivsa~Md-tvTe~~lAia~a~~GgiGvIh~-~-~~~~~q~~~V~~V~~~~~~m~~d~v~l~~~~tv~ea~ 136 (511)
T 3usb_A 60 LSESLQLNIPLISAGMD-TVTEADMAIAMARQGGLGIIHK-N-MSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAE 136 (511)
T ss_dssp EETTEEESSSEEECSCT-TTCSHHHHHHHHHHTCEEEECS-S-SCHHHHHHHHHHHHTSSSCSSSSCCCBCTTSBHHHHH
T ss_pred eecccccCCCccccCch-hhcHHHHHHHHHhcCCceeecc-c-CCHHHHHHHHHHhhccccccccCCEEECCCCCHHHHH
Confidence 67889999999999998 8999999999999999999986 3 5666666666666542
Q ss_pred ------------------cCCcEEe-----------------------eeec----------------------------
Q 022271 62 ------------------TERPFGV-----------------------GVVL---------------------------- 72 (300)
Q Consensus 62 ------------------~~~P~gv-----------------------nl~~---------------------------- 72 (300)
.++++|+ +++.
T Consensus 137 ~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~ 216 (511)
T 3usb_A 137 HLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN 216 (511)
T ss_dssp HHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT
T ss_pred HHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC
Confidence 1122222 1000
Q ss_pred -------------------------------------CCCcHHHHHHHHHcCCcEEEEcCCCC-c---HHHHHHHHHC--
Q 022271 73 -------------------------------------AFPHNENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSA-- 109 (300)
Q Consensus 73 -------------------------------------~~~~~~~~~~~~e~g~~~i~~~~G~~-~---~~~v~~~~~~-- 109 (300)
.....+.++.++++|+++|++....+ + .+.++++++.
T Consensus 217 g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~ 296 (511)
T 3usb_A 217 GVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYP 296 (511)
T ss_dssp SBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT
T ss_pred CCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCC
Confidence 00013557778889999998854322 1 2344444432
Q ss_pred CCeEeec--------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHH
Q 022271 110 GVKVVPQ--------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 110 G~~v~~~--------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~a 151 (300)
+..++.. .+.+..+++++++++..++|||++|||.++.|+++
T Consensus 297 ~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~k 376 (511)
T 3usb_A 297 SLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVK 376 (511)
T ss_dssp TSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHH
T ss_pred CceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHH
Confidence 3343321 23466777877766444799999999999999999
Q ss_pred HHHCCCcEEEeccccccCcccCCC
Q 022271 152 ALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 152 al~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
++++|||+|++||+|+.+.||+..
T Consensus 377 ala~GA~~V~vGs~~~~~~es~g~ 400 (511)
T 3usb_A 377 ALAAGAHVVMLGSMFAGVAESPGE 400 (511)
T ss_dssp HHHTTCSEEEESTTTTTBTTSSSC
T ss_pred HHHhCchhheecHHHhcCccCchh
Confidence 999999999999999999999877
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=149.39 Aligned_cols=167 Identities=20% Similarity=0.263 Sum_probs=112.9
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC----CCCHHHHHHHHHHHHhhc---------------------
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----WEAPDYLRDLIRKTRSLT--------------------- 62 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----~~~~~~l~~~i~~~r~~~--------------------- 62 (300)
.+++||+++||+ +++.++++.+++++|++|+++..+ +..++...+++.++++.+
T Consensus 65 ~l~~Pii~Apm~-g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~ 143 (393)
T 2qr6_A 65 KFDLPFMNHPSD-ALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTEL 143 (393)
T ss_dssp EESSSEEECCCT-TTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCCCeEeCCCC-CcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHH
Confidence 378999999999 899999999999999999998621 224444444444443321
Q ss_pred -----------CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------CCC---cHH--------------------
Q 022271 63 -----------ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-------GEY---SEE-------------------- 101 (300)
Q Consensus 63 -----------~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-------G~~---~~~-------------------- 101 (300)
+.|+.+++... ...+..+.+.+.+++++.++. +.+ ..+
T Consensus 144 ~~~~i~~~~~~g~~v~~~v~~~-~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~t~ 222 (393)
T 2qr6_A 144 LSERIAQVRDSGEIVAVRVSPQ-NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDY 222 (393)
T ss_dssp HHHHHHHHHHTTSCCEEEECTT-THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECCCSH
T ss_pred HHHHHHHHhhcCCeEEEEeCCc-cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEECCcCCH
Confidence 33454544332 234556666778888887641 111 111
Q ss_pred -HHHHHHHCCCeEeec--------------cChhchHHHHHHh-------hCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 102 -LVLEAHSAGVKVVPQ--------------DGLISLLPMVVDL-------IGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 102 -~v~~~~~~G~~v~~~--------------~~~~~ll~~v~~~-------~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+..+.+.|+..+.. .+++..+++++++ +...++|||++|||.++.|+.++|++|||+
T Consensus 223 e~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~ 302 (393)
T 2qr6_A 223 TTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADA 302 (393)
T ss_dssp HHHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCE
Confidence 122222333332211 2456778888877 521129999999999999999999999999
Q ss_pred EEeccccccCcccCCCH
Q 022271 160 ICLGTRFVASEESYAHP 176 (300)
Q Consensus 160 V~~GT~fl~t~Es~~~~ 176 (300)
|++||+|+.+.||+.+.
T Consensus 303 V~iG~~~l~~~es~~~~ 319 (393)
T 2qr6_A 303 VVLGSPLARAEEAAGKG 319 (393)
T ss_dssp EEECGGGGGSTTCTTTT
T ss_pred EEECHHHHcCCCCCCce
Confidence 99999999999998874
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=156.72 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=49.6
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL 61 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~ 61 (300)
|++.+++++||+++||. +++.++|+.+++++|++|++.. + +++++.+++|+++++.
T Consensus 40 lt~~l~l~~PIi~a~m~-~vt~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~v~~~ 95 (486)
T 2cu0_A 40 ITPNVKLNIPILSAAMD-TVTEWEMAVAMAREGGLGVIHR-N-MGIEEQVEQVKRVKRA 95 (486)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS-S-SCHHHHHHHHHHHHTC
T ss_pred ecCCcccccceEEccce-eecHHHHHHHHHhcCCceeecC-C-CCHHHHHHHHHhhcch
Confidence 57889999999999998 8999999999999999999986 3 6888888888887653
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=152.73 Aligned_cols=172 Identities=23% Similarity=0.341 Sum_probs=125.5
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcC----Cc-------------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RP------------- 65 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~----~P------------- 65 (300)
|++.+++++|++++||. .++..+|+.++++.||+|+|.. + +++++..+++++++...+ .|
T Consensus 35 lt~~i~l~iPivsa~M~-tVTe~~lA~ala~~GGiGvI~~-~-~~~e~~a~~v~~vk~~~~~m~~~~v~v~~~~tv~ea~ 111 (490)
T 4avf_A 35 LTRGIELNIPLVSAAMD-TVTEARLAIAMAQEGGIGIIHK-N-MGIEQQAAEVRKVKKHETAIVRDPVTVTPSTKIIELL 111 (490)
T ss_dssp EETTEEESSSEEECSCT-TTCSHHHHHHHHHHTSEEEECC-S-SCHHHHHHHHHHHHHCCC-------------------
T ss_pred cccCcccCCCccccchh-hhCHHHHHHHHHHcCCCccccC-C-CCHHHHHHHhhhhcccccCcccCceEeCCCCcHHHHH
Confidence 67778899999999998 8999999999999999999986 3 688888888877754211 00
Q ss_pred -------------------EEe------------------------eeec------------------------------
Q 022271 66 -------------------FGV------------------------GVVL------------------------------ 72 (300)
Q Consensus 66 -------------------~gv------------------------nl~~------------------------------ 72 (300)
+|+ |++.
T Consensus 112 ~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~ 191 (490)
T 4avf_A 112 QMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFY 191 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 000 0000
Q ss_pred -----------------------------------CCCcHHHHHHHHHcCCcEEEEcCCCC-cH---HHHHHHHHC--CC
Q 022271 73 -----------------------------------AFPHNENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSA--GV 111 (300)
Q Consensus 73 -----------------------------------~~~~~~~~~~~~e~g~~~i~~~~G~~-~~---~~v~~~~~~--G~ 111 (300)
.....+.++.+++.|+++|.+....+ +. +.++++++. ++
T Consensus 192 lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~ 271 (490)
T 4avf_A 192 LRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDV 271 (490)
T ss_dssp ---------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTS
T ss_pred EEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCc
Confidence 00014667888899999998754322 22 445555442 44
Q ss_pred eEeec--------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH
Q 022271 112 KVVPQ--------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153 (300)
Q Consensus 112 ~v~~~--------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal 153 (300)
.++.. .+.+.++++++++++..++|||++|||.+++|+++++
T Consensus 272 ~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal 351 (490)
T 4avf_A 272 QVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAM 351 (490)
T ss_dssp EEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH
T ss_pred eEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHH
Confidence 44321 1255678888887754579999999999999999999
Q ss_pred HCCCcEEEeccccccCcccCCCHH
Q 022271 154 SLGAQGICLGTRFVASEESYAHPE 177 (300)
Q Consensus 154 ~lGAdgV~~GT~fl~t~Es~~~~~ 177 (300)
++|||+|++||+|+.+.||+.+..
T Consensus 352 ~~GAd~V~vGs~~~~~~Esp~~~~ 375 (490)
T 4avf_A 352 VAGAYCVMMGSMFAGTEEAPGEIE 375 (490)
T ss_dssp HHTCSEEEECTTTTTBTTSSSCEE
T ss_pred HcCCCeeeecHHHhcCCCCCCceE
Confidence 999999999999999999998743
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=149.42 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCcEEEEc--CCCC--cHHHHHHHHHC--CCeEeec----------------------------------
Q 022271 77 NENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA--GVKVVPQ---------------------------------- 116 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~--~G~~--~~~~v~~~~~~--G~~v~~~---------------------------------- 116 (300)
.+.++.+++.|+++|.++ .|.+ ..+.++++++. +..++..
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~ 318 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVV 318 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCcccccccc
Confidence 356778888999999874 3543 23445555543 4444311
Q ss_pred ----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 117 ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 117 ----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.+.+..++++.+.++..++|||++|||.++.|+.+++++|||+|++||+|+.++||+.+..||+.+.
T Consensus 319 ~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~ 389 (494)
T 1vrd_A 319 AGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRK 389 (494)
T ss_dssp HCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEE
T ss_pred CCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEE
Confidence 1345567777776543379999999999999999999999999999999999999999998887553
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=147.27 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=50.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL 61 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~ 61 (300)
|++.|++++||+++||. ++|.++|+.+++++|++|++.. + +++++.+++|+++++.
T Consensus 37 lt~~l~~~~Piv~a~M~-~vt~~eLa~av~~~Gg~G~i~~-~-~~~e~~~~~i~~v~~~ 92 (491)
T 1zfj_A 37 LADNLTLNIPIITAAMD-TVTGSKMAIAIARAGGLGVIHK-N-MSITEQAEEVRKVKRS 92 (491)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECC-S-SCHHHHHHHHHHHHHH
T ss_pred hhhcceecCceEecCch-hccHHHHHHHHHHcCCceEEeC-C-CCHHHHHHHHHHHhhH
Confidence 67889999999999999 8999999999999999999976 3 6999999999888653
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=142.80 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=50.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.++.+-++.++.++.++||||.|||.+..|+++||++|||.||||+.|..|.||+..
T Consensus 369 Q~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe 425 (556)
T 4af0_A 369 QGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGE 425 (556)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred HHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCc
Confidence 456666677666545799999999999999999999999999999999999999864
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-15 Score=136.35 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=115.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHH-HHHHHH--hhcCCcEEeeeecCCCc--HHHHHHH
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRD-LIRKTR--SLTERPFGVGVVLAFPH--NENIKAI 83 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~-~i~~~r--~~~~~P~gvnl~~~~~~--~~~~~~~ 83 (300)
+++||++|||+ |+|+..++..+.+.|++|++.++ +.+++.+.. .-+++. ...+.|+++||....+. .+.++.+
T Consensus 2 l~nriv~APM~-g~td~~~r~~~r~~Gg~gli~te-~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a 79 (350)
T 3b0p_A 2 LDPRLSVAPMV-DRTDRHFRFLVRQVSLGVRLYTE-MTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKSLAEAARIG 79 (350)
T ss_dssp CCCSEEECCCT-TTSSHHHHHHHHHHCSSSBEECC-CEEHHHHHHSCHHHHHCCCGGGCSEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEECCCC-CCCHHHHHHHHHHcCCCCEEEeC-CEEechhhcCCHHHHhccCCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 57999999998 89999999999999999999874 566665422 111222 23568999999976542 4556777
Q ss_pred HHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEee----------------------------
Q 022271 84 LSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVP---------------------------- 115 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~---------------------------- 115 (300)
.+.|++.|.+++|+|.. ++++.+++ .++.|..
T Consensus 80 ~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d 159 (350)
T 3b0p_A 80 EAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVK 159 (350)
T ss_dssp HHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCC
Confidence 78899999998887632 22333332 2444332
Q ss_pred ---cc------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 116 ---QD------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 116 ---~~------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.. ..+.++.++++.+. ++|||++|||.|++++.+++. |||+|++|+.|+..++
T Consensus 160 ~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~--~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~ 233 (350)
T 3b0p_A 160 VFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP--QLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPF 233 (350)
T ss_dssp EEEEECSCBC----------CCCCCHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGG
T ss_pred EEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcH
Confidence 10 02456777777652 699999999999999999998 9999999999998765
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=137.30 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCcEEEE--cCCCCc--HHHHHHHHHC--CCeEeec--------------------c----C--------
Q 022271 77 NENIKAILSEKVAVLQV--SWGEYS--EELVLEAHSA--GVKVVPQ--------------------D----G-------- 118 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~--~~G~~~--~~~v~~~~~~--G~~v~~~--------------------~----~-------- 118 (300)
.+.++.+++.|+++|.+ ++|.+. .++++.+++. ++.++.. . +
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~ 336 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEV 336 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCC
T ss_pred HHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccc
Confidence 45667888999999997 456542 3667777765 7776531 0 1
Q ss_pred ---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 119 ---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 119 ---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
.+.+++++++.+ ++|||++|||.++.|+.+++++|||+|+|||+|+.++|++.+..||+
T Consensus 337 ~~~g~~~~~~~~~~~~~~~~~---~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~ 404 (514)
T 1jcn_A 337 MACGRPQGTAVYKVAEYARRF---GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSD 404 (514)
T ss_dssp CSCCCCHHHHHHHHHHHHGGG---TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC-----
T ss_pred cCCCccchhHHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeEC
Confidence 134556666655 79999999999999999999999999999999999999999999986
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=154.23 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=117.3
Q ss_pred ccCCccceecCCCCCCCCc----HHHHHHHHhCCceEEecCCCCCCHHHHHH------------------------HHHH
Q 022271 6 MLGFEYGIVQAPLGPDISG----PELVAAVANAGGLGLLRAPDWEAPDYLRD------------------------LIRK 57 (300)
Q Consensus 6 ~lg~~~Pii~apM~~g~s~----~~la~avs~aGglG~i~~~~~~~~~~l~~------------------------~i~~ 57 (300)
.++|++||+++||++|..+ ..||.+++++|+++.++.+ ..+|+.++. .+..
T Consensus 863 ~~~I~~Pfii~aMS~GslS~ea~~aLA~Aas~aGg~~~tGeG-g~~pe~~~~eir~~~~~~~~~~p~~~~~~nG~~~~~~ 941 (1520)
T 1ofd_A 863 VESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEG-GEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSA 941 (1520)
T ss_dssp HHHHHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTT-CCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCS
T ss_pred cccccCceEecCcCcccccHHHHHHHHHHHHHcCCceEeCCC-CCCHHHHHhhhccccccccccccccccccCcchHHHH
Confidence 3578999999999976444 3999999999999999985 568877642 2234
Q ss_pred HHhhcCCcEEeeee----------------------------------------------cCCCc------H---HHHHH
Q 022271 58 TRSLTERPFGVGVV----------------------------------------------LAFPH------N---ENIKA 82 (300)
Q Consensus 58 ~r~~~~~P~gvnl~----------------------------------------------~~~~~------~---~~~~~ 82 (300)
+++++++|||||+. .+.++ + +.++.
T Consensus 942 I~Ql~sg~FGVn~~~l~~ad~IeIKi~QGAKpG~GG~Lp~~kV~~~iA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~ 1021 (1520)
T 1ofd_A 942 IKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYD 1021 (1520)
T ss_dssp EEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCCccChhhccchHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHcCCCCCCCeeCCCCCcCcCCHHHHHHHHHH
Confidence 56667778887632 11111 1 33444
Q ss_pred HHHc--CCcEEEEcCC-CCcHHHHHHHHHCCCeEeec-------------------cChhchHHHHHHhhCC----CCCc
Q 022271 83 ILSE--KVAVLQVSWG-EYSEELVLEAHSAGVKVVPQ-------------------DGLISLLPMVVDLIGD----RDIP 136 (300)
Q Consensus 83 ~~e~--g~~~i~~~~G-~~~~~~v~~~~~~G~~v~~~-------------------~~~~~ll~~v~~~~~~----~~iP 136 (300)
+.+. +++++..-.+ .........+.++|+..+.. .+++.+|+++.+++.. .++|
T Consensus 1022 Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~Ip 1101 (1520)
T 1ofd_A 1022 LHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVL 1101 (1520)
T ss_dssp HHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCE
T ss_pred HHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCce
Confidence 5554 4565543221 11233445566777776543 2467788999887621 2699
Q ss_pred EEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 137 IIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 137 ViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
||++|||.|++|+++++++||++|++||+|+.+.+|.
T Consensus 1102 VIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~ 1138 (1520)
T 1ofd_A 1102 LRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCI 1138 (1520)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCC
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=152.86 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=114.0
Q ss_pred cCCccceecCCCCCCCCcH----HHHHHHHhCCceEEecCCCCCCHHHHH------HHHHHHHhhcCCcEEeee------
Q 022271 7 LGFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLR------DLIRKTRSLTERPFGVGV------ 70 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~~~l~------~~i~~~r~~~~~P~gvnl------ 70 (300)
.+|++|++++||++|..++ .||.+++++|+++.++.+ ..+++.++ +.+..+|+.+++|||||+
T Consensus 847 ~~I~~Pf~isaMS~GalS~ea~~aLA~Aa~~aGg~~~tGeG-g~~pe~~~~~~~g~~~~~~IrQ~asg~FGVn~~~l~~a 925 (1479)
T 1ea0_A 847 TAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEG-GEDPARFRPDKNGDNWNSAIKQVASGRFGVTAEYLNQC 925 (1479)
T ss_dssp HHHHTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTT-CCCGGGSSBCTTSCBCCCSEEEECSSCTTCCHHHHTSC
T ss_pred ccccCCeEecCccccccCHHHHHHHHHHHHHcCCeeEcCCC-ccCHHHhhhccccchhhhhhhhhcCCCCCcChHHcccc
Confidence 3678999999999774444 999999999999999875 46776553 133345555555666553
Q ss_pred ----------------------------------------ecCCCc------H---HHHHHHHHc--CCcEEEEcCC-CC
Q 022271 71 ----------------------------------------VLAFPH------N---ENIKAILSE--KVAVLQVSWG-EY 98 (300)
Q Consensus 71 ----------------------------------------~~~~~~------~---~~~~~~~e~--g~~~i~~~~G-~~ 98 (300)
+.+.++ + +.++.+.+. +++++..-.+ ..
T Consensus 926 ~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g 1005 (1479)
T 1ea0_A 926 RELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSG 1005 (1479)
T ss_dssp SEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTT
T ss_pred chHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 222111 2 234444444 4555543221 11
Q ss_pred cHHHHHHHHHCCCeEeec-------------------cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHC
Q 022271 99 SEELVLEAHSAGVKVVPQ-------------------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------------------~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~l 155 (300)
.......+.++|+..+.. .+++.+|+++.+++.. .++|||++|||.|++|+++++++
T Consensus 1006 i~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaL 1085 (1479)
T 1ea0_A 1006 IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML 1085 (1479)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHc
Confidence 233445566777766543 2466789999987631 26999999999999999999999
Q ss_pred CCcEEEeccccccCcccC
Q 022271 156 GAQGICLGTRFVASEESY 173 (300)
Q Consensus 156 GAdgV~~GT~fl~t~Es~ 173 (300)
||++|++||+|+.+.+|.
T Consensus 1086 GAdaV~iGTafL~a~gc~ 1103 (1479)
T 1ea0_A 1086 GAEEFGIGTASLIAMGCI 1103 (1479)
T ss_dssp TCSEEECCHHHHHHHTCC
T ss_pred CCCeeeEcHHHHHHHHHH
Confidence 999999999999988764
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=120.59 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=104.4
Q ss_pred cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCc-EEeeee-------cCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-FGVGVV-------LAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P-~gvnl~-------~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
-.+||.+++++|+.|+... ++ +.|+++|+.++.| ||++.- .-.++.+.++.+.+.|+++|.+..
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~ 109 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRIE----GI----ENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA 109 (229)
T ss_dssp HHHHHHHHHHTTCSEEEEE----SH----HHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHCCCcEEEEC----CH----HHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECc
Confidence 3699999999999997652 33 4789999999999 666642 223456778899999999998754
Q ss_pred C---CC--cHHHHHHHHHCCCeEeec--------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 G---EY--SEELVLEAHSAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 G---~~--~~~~v~~~~~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
. .| ..++++.+++.|..++.. ...+.+++++++. ++|||
T Consensus 110 ~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvI 185 (229)
T 3q58_A 110 SFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVI 185 (229)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEE
T ss_pred cccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEE
Confidence 3 22 367888888888887754 0134566666653 69999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.|||.|++++.+++.+|||||++||+|+.+
T Consensus 186 A~GGI~t~~d~~~~~~~GadgV~VGsai~~p 216 (229)
T 3q58_A 186 AEGRYNTPALAANAIEHGAWAVTVGSAITRI 216 (229)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEECHHHHCH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchHhcCh
Confidence 9999999999999999999999999999863
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=131.80 Aligned_cols=61 Identities=33% Similarity=0.324 Sum_probs=51.9
Q ss_pred ChhchHHHHHHhhCCC------CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHH
Q 022271 118 GLISLLPMVVDLIGDR------DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~------~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~ 178 (300)
+++..++++.+++++. ++|||++|||.++.|+++||++|||+|+|||+|+.+.||+.+..+
T Consensus 330 p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~ 396 (503)
T 1me8_A 330 GQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVT 396 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEE
T ss_pred chHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEE
Confidence 3556778887765321 599999999999999999999999999999999999999977643
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=119.11 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=108.4
Q ss_pred cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCc-EEeeee-------cCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-FGVGVV-------LAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P-~gvnl~-------~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
..++|.++.++|+.|+... ++ +.|+++|+.++.| +|+|.. .-.++.+.++.+.+.|+++|.+..
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~ 109 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRIE----GI----DNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDG 109 (232)
T ss_dssp HHHHHHHHHHTTCSEEEEE----SH----HHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEC----CH----HHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECc
Confidence 3699999999999997642 33 5789999999999 555432 122456778899999999998754
Q ss_pred C---CC--cHHHHHHHHHCCCeEeec--------------------------------cChhchHHHHHHhhCCCCCcEE
Q 022271 96 G---EY--SEELVLEAHSAGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 96 G---~~--~~~~v~~~~~~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~iPVi 138 (300)
. .| ..++++.+++.|..++.. ...+.+++++++. ++|||
T Consensus 110 ~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvI 185 (232)
T 3igs_A 110 TARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVI 185 (232)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEE
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEE
Confidence 3 22 357888888888777654 0134567777664 69999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
+.|||.|++++.+++.+|||||++||+|+...+ ....|++.+
T Consensus 186 A~GGI~t~~d~~~~~~~GadgV~VGsal~~p~~--~~~~~~~~i 227 (232)
T 3igs_A 186 AEGRYNSPALAAEAIRYGAWAVTVGSAITRLEH--ICGWYNDAL 227 (232)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEECHHHHCHHH--HHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEehHhcCHHH--HHHHHHHHH
Confidence 999999999999999999999999999986322 334455444
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=124.63 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHH----HHHHHHHhhcCCcEEeeeecCCCc--HHHHH
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLR----DLIRKTRSLTERPFGVGVVLAFPH--NENIK 81 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~----~~i~~~r~~~~~P~gvnl~~~~~~--~~~~~ 81 (300)
.++.||++|||+ ++|+..+...+++.|+ |++.++ +.+++.+. +.++.+....+.|+++||....+. .+.++
T Consensus 2 ~l~nri~~APM~-~~t~~~~r~~~~~~G~-gli~te-~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~g~~~~~~~~aa~ 78 (318)
T 1vhn_A 2 SLEVKVGLAPMA-GYTDSAFRTLAFEWGA-DFAFSE-MVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAAR 78 (318)
T ss_dssp ---CEEEECCCT-TTCSHHHHHHHHTTTC-CCEECS-CEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHH
T ss_pred ccCCCEEECCCC-CCCcHHHHHHHHHHCc-CEEEeC-CEEEcccccCCHhHHHhhhCcCCCeEEEEeCCCCHHHHHHHHH
Confidence 468999999999 8999999999888875 888764 45554332 123333334578999999965442 34566
Q ss_pred HHHHcCCcEEEEcCCCCcH-------------------HHHHHHHH-CCCeEeec-------------------------
Q 022271 82 AILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQ------------------------- 116 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~-------------------~~v~~~~~-~G~~v~~~------------------------- 116 (300)
.+.+. .+.|.+++|+|.. ++++.+++ .+..|...
T Consensus 79 ~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i 157 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEV 157 (318)
T ss_dssp HHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEE
T ss_pred HHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEE
Confidence 66677 9999998887632 23444443 34444322
Q ss_pred -------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcc
Q 022271 117 -------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~E 171 (300)
...+.+++++ +. ++|||++|||.|++|+.+++. .|||+|++|+.|+..++
T Consensus 158 ~v~g~~~~~~~~~~~~~~~i~~i----~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~ 221 (318)
T 1vhn_A 158 FIHTRTVVQSFTGRAEWKALSVL----EK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221 (318)
T ss_dssp EEESSCTTTTTSSCCCGGGGGGS----CC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred EEcCCCccccCCCCcCHHHHHHH----Hc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 0112222222 22 699999999999999999999 79999999999998754
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=128.04 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=98.4
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHH-HHHHHHh-hcCCcEEeeeecCCCc--HHHHHHHHH-c
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRD-LIRKTRS-LTERPFGVGVVLAFPH--NENIKAILS-E 86 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~-~i~~~r~-~~~~P~gvnl~~~~~~--~~~~~~~~e-~ 86 (300)
++.++||+ |.+.|+|+ ++++|+++.++.. ..+++.+.+ .++++|+ .++.|+++|+....+. .+.++.+.+ .
T Consensus 49 si~~~p~~-g~~~p~l~--~~~~g~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~ 124 (311)
T 1ep3_A 49 ATTLHPRF-GNPTPRVA--ETASGMLNAIGLQ-NPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAA 124 (311)
T ss_dssp EECSSCBC-CCCSCCEE--EETTEEEECCCCC-BCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTST
T ss_pred eeccCccC-CCCCCeEE--ECCcccccccCCC-CcCHHHHHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccC
Confidence 33444443 34444443 2344444444442 356676644 4667776 5589999999876432 344555555 7
Q ss_pred CCcEEEEcCCCCc---------------HHHHHHHHHC-CCeEeec-------------------------cC-------
Q 022271 87 KVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQ-------------------------DG------- 118 (300)
Q Consensus 87 g~~~i~~~~G~~~---------------~~~v~~~~~~-G~~v~~~-------------------------~~------- 118 (300)
+++.|.+++++|. .++++.+++. +..++.. .+
T Consensus 125 g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i 204 (311)
T 1ep3_A 125 NVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRF 204 (311)
T ss_dssp TEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCB
T ss_pred CCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCccccc
Confidence 8999988766431 3455555544 5544321 00
Q ss_pred ---h---------------------hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 119 ---L---------------------ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 119 ---~---------------------~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+ +.++.++++.+ ++|||++|||.|++++.+++.+|||+|++||+|+..++
T Consensus 205 ~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~---~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~ 278 (311)
T 1ep3_A 205 DLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV---DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278 (311)
T ss_dssp CTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC---SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTT
T ss_pred CcccCCccccCCCCcccCccchHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcH
Confidence 0 24455666555 79999999999999999999999999999999999655
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-13 Score=123.76 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=106.5
Q ss_pred cccC--CccceecCCCCC-CCC----cHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-
Q 022271 5 GMLG--FEYGIVQAPLGP-DIS----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~-g~s----~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~- 76 (300)
+++| ++.||+.+||+. |.+ ...++.++.++|...+++.....+.++ +.+.. .+.|+.++|+.+...
T Consensus 73 ~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~----v~~~~--~~~~~~~QLy~~~d~~ 146 (368)
T 2nli_A 73 EILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEE----ISEGL--NGGPRWFQIYMAKDDQ 146 (368)
T ss_dssp EETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHH----HHHHH--TTCCEEEEECCBSSHH
T ss_pred EECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHH----HHHhC--CCCCEEEEEeccCCHH
Confidence 4566 578999999971 234 358999999999877777532123332 22211 356888888764322
Q ss_pred --HHHHHHHHHcCCcEEEEcCCCCc----------------------------------------------HHHHHHHHH
Q 022271 77 --NENIKAILSEKVAVLQVSWGEYS----------------------------------------------EELVLEAHS 108 (300)
Q Consensus 77 --~~~~~~~~e~g~~~i~~~~G~~~----------------------------------------------~~~v~~~~~ 108 (300)
.+.++.+.+.|++++.++.++|. .+.++.+++
T Consensus 147 ~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~ 226 (368)
T 2nli_A 147 QNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAG 226 (368)
T ss_dssp HHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHH
Confidence 35566666777777766555431 112233332
Q ss_pred -CCCeEeec--------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 109 -AGVKVVPQ--------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 109 -~G~~v~~~--------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
.++.++.. .+++.+++++++++.+ ++|||++|||.++.|+.++|++
T Consensus 227 ~~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~-~ipVia~GGI~~g~D~~kalal 305 (368)
T 2nli_A 227 HSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNK-RVPIVFDSGVRRGEHVAKALAS 305 (368)
T ss_dssp HSSSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTT-SSCEEECSSCCSHHHHHHHHHT
T ss_pred HcCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHHHc
Confidence 23333211 2467889999998842 6999999999999999999999
Q ss_pred CCcEEEeccccccCc
Q 022271 156 GAQGICLGTRFVASE 170 (300)
Q Consensus 156 GAdgV~~GT~fl~t~ 170 (300)
|||+|++|++|+...
T Consensus 306 GAd~V~iGr~~l~~~ 320 (368)
T 2nli_A 306 GADVVALGRPVLFGL 320 (368)
T ss_dssp TCSEEEECHHHHHHH
T ss_pred CCCEEEECHHHHHHH
Confidence 999999999999874
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=123.82 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=45.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCH
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 176 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~ 176 (300)
+...++++.. +. .++|||++|||.++.|++++|++|||+|++||+|+....+...+
T Consensus 265 t~~~L~~v~~-~~-~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~ 320 (365)
T 3sr7_A 265 TAQVLLNAQP-LM-DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVH 320 (365)
T ss_dssp HHHHHHHHGG-GT-TTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHH
T ss_pred HHHHHHHHHH-hc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChH
Confidence 4456676643 32 26999999999999999999999999999999999876554443
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=122.61 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=48.0
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCccc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 172 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es 172 (300)
+++..++++++++.. ++|||++|||.++.|+.++|++|||+|++|++|+....+
T Consensus 292 ~~~~~l~~v~~av~~-~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~ 345 (392)
T 2nzl_A 292 ATIDVLPEIVEAVEG-KVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAF 345 (392)
T ss_dssp CHHHHHHHHHHHHTT-SSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-CCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHh
Confidence 367889999998842 599999999999999999999999999999999987543
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=117.24 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=46.9
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++.+++++++++.. ++|||++|||.++.|+.++|++|||+|++||+|+...
T Consensus 257 ~~~~~L~~i~~av~~-~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l 308 (352)
T 3sgz_A 257 ASIDALREVVAAVKG-KIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGL 308 (352)
T ss_dssp CHHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHH
T ss_pred cHHHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 467899999998853 6999999999999999999999999999999999753
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=115.28 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=43.8
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+...++++++++. ++|||++|||.++.|+.++|++|||+|++||+|+.+.
T Consensus 254 t~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~ 303 (368)
T 3vkj_A 254 TAASIMEVRYSVP--DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSA 303 (368)
T ss_dssp HHHHHHHHHHHST--TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 3356778888773 5999999999999999999999999999999999754
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=120.37 Aligned_cols=62 Identities=23% Similarity=0.489 Sum_probs=50.8
Q ss_pred hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 119 LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 119 ~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
.+.+++++++++.. .++|||++|||.++.|+.++|++|||+|++|++|+....+...+..++
T Consensus 384 ~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~~G~~gv~~ 449 (511)
T 1kbi_A 384 PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 449 (511)
T ss_dssp HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHH
Confidence 56789999988731 269999999999999999999999999999999999765443333333
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=115.10 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=102.4
Q ss_pred cccC--CccceecCCCCCCCC-------cHHHHHHHHhCCceEEecCCC--CCCHHHHHHHHHHHHh-hcCCcEEeeeec
Q 022271 5 GMLG--FEYGIVQAPLGPDIS-------GPELVAAVANAGGLGLLRAPD--WEAPDYLRDLIRKTRS-LTERPFGVGVVL 72 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s-------~~~la~avs~aGglG~i~~~~--~~~~~~l~~~i~~~r~-~~~~P~gvnl~~ 72 (300)
+++| ++.|++.|||+ |.+ +..++.++.++|..-.++... ..+++. ....+.+++ ..+.|+.+|+..
T Consensus 48 ~i~g~~~~~P~~iApm~-g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~pv~~~i~~ 125 (349)
T 1p0k_A 48 KIGELSSSSPIFINAMT-GGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSE-RLSYEIVRKENPNGLIFANLGS 125 (349)
T ss_dssp EETTEEESCSEEEECCC-CSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHH-HHHHHHHHHHCSSSCEEEEEET
T ss_pred EECCcccCCceEEcCcc-ccchhhhhHHHHHHHHHHHHcCCcEEeccchhcccCccc-ccceehhhhhCCCceeEEeecC
Confidence 4456 56899999998 788 668899988888433343311 112221 222233333 247899888874
Q ss_pred CCCcHHHHHHHHHcCCcEEEEcCCCCc--------------HHHHHHHHH-CCCeEeec---------------------
Q 022271 73 AFPHNENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHS-AGVKVVPQ--------------------- 116 (300)
Q Consensus 73 ~~~~~~~~~~~~e~g~~~i~~~~G~~~--------------~~~v~~~~~-~G~~v~~~--------------------- 116 (300)
....+...+.+.+.+++.|.++.++|. .+.++++++ .++.++..
T Consensus 126 ~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~ 205 (349)
T 1p0k_A 126 EATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAA 205 (349)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSE
T ss_pred CCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCE
Confidence 333333334444556777665544321 133444432 23333210
Q ss_pred ---c---------------------------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 117 ---D---------------------------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 117 ---~---------------------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. ++...++++++.+ .++|||+.|||.+++|+.+++++|||+|++||+|
T Consensus 206 I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~ 283 (349)
T 1p0k_A 206 VDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMAGHF 283 (349)
T ss_dssp EEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred EEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 0 1122466666655 2799999999999999999999999999999999
Q ss_pred ccCcccC
Q 022271 167 VASEESY 173 (300)
Q Consensus 167 l~t~Es~ 173 (300)
+...++.
T Consensus 284 l~~~~~~ 290 (349)
T 1p0k_A 284 LKALTDS 290 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9987643
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-11 Score=112.23 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=45.2
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+++..++++++.+.+ ++|||+.|||.++.|+.+++++|||+|++|++|+..
T Consensus 265 ~~~~~l~~v~~~~~~-~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 265 ATIMALEEVVKAAQG-RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp CHHHHHHHHHHHTTT-SSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred cHHHHHHHHHHHhCC-CCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHH
Confidence 356678899888742 699999999999999999999999999999999975
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-11 Score=104.57 Aligned_cols=142 Identities=17% Similarity=0.302 Sum_probs=105.0
Q ss_pred cCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecC---------CCcHHHHHHHHH
Q 022271 15 QAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA---------FPHNENIKAILS 85 (300)
Q Consensus 15 ~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~---------~~~~~~~~~~~e 85 (300)
..||....+..+++.++.++|+.++... ++ +.++++|+.++.|+ ++++.. .++.+.++.+.+
T Consensus 16 ~~p~~~~~~~~~~a~~~~~~Ga~~i~~~----~~----~~i~~i~~~~~~pv-~~~~~~~~~~~~~~i~~~~~~i~~~~~ 86 (223)
T 1y0e_A 16 DEPLHSSFIMSKMALAAYEGGAVGIRAN----TK----EDILAIKETVDLPV-IGIVKRDYDHSDVFITATSKEVDELIE 86 (223)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTCSEEEEE----SH----HHHHHHHHHCCSCE-EEECBCCCTTCCCCBSCSHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHCCCeeeccC----CH----HHHHHHHHhcCCCE-EeeeccCCCccccccCCcHHHHHHHHh
Confidence 3588733567899999999999887542 44 45788888899998 433221 134678889999
Q ss_pred cCCcEEEEcCCC---C---cHHHHHHHHHC--CCeEeec----------------------c-----------C--hhch
Q 022271 86 EKVAVLQVSWGE---Y---SEELVLEAHSA--GVKVVPQ----------------------D-----------G--LISL 122 (300)
Q Consensus 86 ~g~~~i~~~~G~---~---~~~~v~~~~~~--G~~v~~~----------------------~-----------~--~~~l 122 (300)
.|++.|.++... | ..++++.+++. |..++.. . . .+.+
T Consensus 87 ~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~ 166 (223)
T 1y0e_A 87 SQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQF 166 (223)
T ss_dssp HTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHH
T ss_pred CCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHH
Confidence 999999876532 2 24677777776 6666432 0 0 1235
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++++++.+ ++||++.|||.|++++.+++.+|||+|++||+|+.
T Consensus 167 ~~~~~~~~---~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 167 LKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp HHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHhhC---CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 66777665 79999999999999999999999999999999775
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-10 Score=105.93 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=62.5
Q ss_pred HHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-----------cChhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 79 NIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 79 ~~~~~~e-~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
.++.+.+ .+.+++.... ...+.+..+.++|+..+.. .+++.+++++++.+ ++|||++|||.++
T Consensus 216 ~i~~i~~~~~~Pv~vkgv--~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GGI~~~ 290 (380)
T 1p4c_A 216 ALRWLRDLWPHKLLVKGL--LSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGFRRG 290 (380)
T ss_dssp HHHHHHHHCCSEEEEEEE--CCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSCCSH
T ss_pred HHHHHHHhcCCCEEEEec--CcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECCCCCH
Confidence 3444433 2455554322 2344566666666655432 23578999999998 6799999999999
Q ss_pred HHHHHHHHCCCcEEEeccccccC
Q 022271 147 RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.|+.++|++|||+|++|++|+..
T Consensus 291 ~dv~kal~~GAdaV~iGr~~l~~ 313 (380)
T 1p4c_A 291 SDIVKALALGAEAVLLGRATLYG 313 (380)
T ss_dssp HHHHHHHHTTCSCEEESHHHHHH
T ss_pred HHHHHHHHhCCcHhhehHHHHHH
Confidence 99999999999999999999864
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=107.02 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHHHHC---CCeEe--eccChhchHHH
Q 022271 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSA---GVKVV--PQDGLISLLPM 125 (300)
Q Consensus 52 ~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~~~~---G~~v~--~~~~~~~ll~~ 125 (300)
.+.++++|+ ++.|+.++.+.+....+.++.+.+.|++.|.++. |......++..+.. +-..+ ...+++..+++
T Consensus 171 ~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 249 (332)
T 1vcf_A 171 VERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILE 249 (332)
T ss_dssp HHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHH
T ss_pred HHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHH
Confidence 456777788 8889999865443456678888899999998853 21111112211110 00000 11457788899
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++++. ++|||++|||.++.|+.++|++|||+|++||+|+.+.
T Consensus 250 v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 250 VREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA 292 (332)
T ss_dssp HHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred HHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH
Confidence 998874 6999999999999999999999999999999999765
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-10 Score=100.55 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=103.6
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------CC--------------------CHHHHHHHHHHHHh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WE--------------------APDYLRDLIRKTRS 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~--------------------~~~~l~~~i~~~r~ 60 (300)
++.||+.|+.. .-.+.++...+.+.| +|++-... .. ..+.+.+.+++.++
T Consensus 11 l~npv~~Aag~-~~~~~~~~~~~~~~G-~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~ 88 (311)
T 1jub_A 11 FANPFMNASGV-HCMTIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQK 88 (311)
T ss_dssp ESSSEEECTTS-SCSSHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHH
T ss_pred cCCCcEECCCC-CCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHH
Confidence 57899999632 123788888877765 56653211 00 13555566666554
Q ss_pred hc--CCcEEeeeecCCC--cHHHHHHHHHcCCc-EEEEcCCCCc--------------HHHHHHHHHC-CCeEeec----
Q 022271 61 LT--ERPFGVGVVLAFP--HNENIKAILSEKVA-VLQVSWGEYS--------------EELVLEAHSA-GVKVVPQ---- 116 (300)
Q Consensus 61 ~~--~~P~gvnl~~~~~--~~~~~~~~~e~g~~-~i~~~~G~~~--------------~~~v~~~~~~-G~~v~~~---- 116 (300)
.. +.|+++|+....+ +.+.++.+.+.+++ +|.+++++|. .++++.+++. +..++..
T Consensus 89 ~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 89 ENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp HTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred hcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45 7899999986543 24567778888999 9998876431 2344444432 3333211
Q ss_pred -----------------------c----------------------------C------hhchHHHHHHhhCCCCCcEEE
Q 022271 117 -----------------------D----------------------------G------LISLLPMVVDLIGDRDIPIIA 139 (300)
Q Consensus 117 -----------------------~----------------------------~------~~~ll~~v~~~~~~~~iPVia 139 (300)
. + .+.+++++++.+. .++|||+
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~-~~ipvi~ 247 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIG 247 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC-TTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcC-CCCCEEE
Confidence 0 0 1234555555542 1699999
Q ss_pred ccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 140 AGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 140 aGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.|||.|++|+.+++.+|||+|++||+|+.
T Consensus 248 ~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 248 TGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 99999999999999999999999999998
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-10 Score=115.75 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=110.5
Q ss_pred cccCC--ccceecCCCCCCCCcHHHHHHHHhCCceEEecC----------CCC---------------------------
Q 022271 5 GMLGF--EYGIVQAPLGPDISGPELVAAVANAGGLGLLRA----------PDW--------------------------- 45 (300)
Q Consensus 5 ~~lg~--~~Pii~apM~~g~s~~~la~avs~aGglG~i~~----------~~~--------------------------- 45 (300)
+++|+ +.||+.|||. +..+.+++....++| +|++.. ++.
T Consensus 536 ~~~G~~~~nPv~lAa~~-~~~~~~~~~~~~~~g-~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~ 613 (1025)
T 1gte_A 536 EMAGLKFINPFGLASAA-PTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELI 613 (1025)
T ss_dssp EETTEEESSSEEECSSG-GGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCS
T ss_pred eeccccccCcccccCCC-CCCCHHHHHHHHHCC-cCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccc
Confidence 34554 5899999998 577788888877765 444321 000
Q ss_pred --CCHHHHHHHHHHHHhhc-CCcEEeeeecCCC---cHHHHHHHHHcCCcEEEEcCCCCc------------------HH
Q 022271 46 --EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFP---HNENIKAILSEKVAVLQVSWGEYS------------------EE 101 (300)
Q Consensus 46 --~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~---~~~~~~~~~e~g~~~i~~~~G~~~------------------~~ 101 (300)
...+.+.+.++++++.. +.|+++|++.... +.+.++.+.+.++++|.+++++|. .+
T Consensus 614 ~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~ 693 (1025)
T 1gte_A 614 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRN 693 (1025)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHH
Confidence 12345556677777755 7899999975432 245667777889999999887652 13
Q ss_pred HHHHHHHC-CCeEeec------------------------c--------------------------------C--h---
Q 022271 102 LVLEAHSA-GVKVVPQ------------------------D--------------------------------G--L--- 119 (300)
Q Consensus 102 ~v~~~~~~-G~~v~~~------------------------~--------------------------------~--~--- 119 (300)
+++.+++. ++.++.. . + .
T Consensus 694 iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~ 773 (1025)
T 1gte_A 694 ICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPI 773 (1025)
T ss_dssp HHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHH
T ss_pred HHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhH
Confidence 44444432 3333321 0 0 0
Q ss_pred -hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 120 -ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 120 -~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.+++++++.+. ++|||+.|||.|++|+.++|++|||+|++||+|+.
T Consensus 774 ~~~~v~~v~~~~~--~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~ 821 (1025)
T 1gte_A 774 ALRAVTTIARALP--GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQN 821 (1025)
T ss_dssp HHHHHHHHHHHST--TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHHcC--CCCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc
Confidence 245777777762 69999999999999999999999999999999997
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.9e-10 Score=101.70 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=100.7
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC--------------------------CCC--CHHHHHHHHHHHHh
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------------------------DWE--APDYLRDLIRKTRS 60 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------------------------~~~--~~~~l~~~i~~~r~ 60 (300)
++.||+.+++. .-.+.++.....+.| +|++..+ ++. ..+.+.+.+++.+.
T Consensus 13 l~nPi~~Aag~-~~~~~~~~~~~~~~G-~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~ 90 (314)
T 2e6f_A 13 FANPFMNAAGV-LCSTEEDLRCMTASS-SGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHD 90 (314)
T ss_dssp ESSSEEECTTS-SCSSHHHHHHHHHSS-CSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCC
T ss_pred cCCCcEECCCC-CCCCHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhh
Confidence 68899999864 123577777766655 5654221 111 13444444444333
Q ss_pred hcCCcEEeeeecCCC--cHHHHHHHHHcCCc---EEEEcCCCCc--------------HHHH------------------
Q 022271 61 LTERPFGVGVVLAFP--HNENIKAILSEKVA---VLQVSWGEYS--------------EELV------------------ 103 (300)
Q Consensus 61 ~~~~P~gvnl~~~~~--~~~~~~~~~e~g~~---~i~~~~G~~~--------------~~~v------------------ 103 (300)
..+.|+++|+....+ +.+.++.+.+.+++ +|.+++++|. .+++
T Consensus 91 ~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~ 170 (314)
T 2e6f_A 91 YSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY 170 (314)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 357899999986443 24456667777788 7877765431 1222
Q ss_pred ----------HHHHHCC-CeEeecc----------------------------C------hhchHHHHHHhhCCCCCcEE
Q 022271 104 ----------LEAHSAG-VKVVPQD----------------------------G------LISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 104 ----------~~~~~~G-~~v~~~~----------------------------~------~~~ll~~v~~~~~~~~iPVi 138 (300)
+.+.++| +..+... + .+.++.++++.+ .++|||
T Consensus 171 ~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~--~~ipvi 248 (314)
T 2e6f_A 171 FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC--PDKLVF 248 (314)
T ss_dssp CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC--TTSEEE
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc--CCCCEE
Confidence 2334456 4433210 0 135666777765 279999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.|||.|++|+.+++.+|||+|++||+|+.
T Consensus 249 ~~GGI~~~~da~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 249 GCGGVYSGEDAFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp EESSCCSHHHHHHHHHHTCSSEEECHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchhhHh
Confidence 999999999999999999999999999997
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-09 Score=90.45 Aligned_cols=133 Identities=17% Similarity=0.286 Sum_probs=95.0
Q ss_pred CcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeec---------CCCcHHHHHHHHHcCCcEEEE
Q 022271 23 SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL---------AFPHNENIKAILSEKVAVLQV 93 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~---------~~~~~~~~~~~~e~g~~~i~~ 93 (300)
...+++.++.++|+.++... ++ +.++++|+.++.|+ +++.. -.+..+.++.+.+.|++.|.+
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~----~~----~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l 107 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRAN----SV----RDIKEIQAITDLPI-IGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAM 107 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEE----SH----HHHHHHHTTCCSCE-EEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEE
T ss_pred hHHHHHHHHHHCCCcEeecC----CH----HHHHHHHHhCCCCE-EeeEcCCCCccccccCChHHHHHHHHHcCCCEEEE
Confidence 34789999999998876432 44 35888899999998 32221 113467899999999999987
Q ss_pred cCCC---C----cHHHHHHHHHC--CCeEeec-----------------c---------C-------hhchHHHHHHhhC
Q 022271 94 SWGE---Y----SEELVLEAHSA--GVKVVPQ-----------------D---------G-------LISLLPMVVDLIG 131 (300)
Q Consensus 94 ~~G~---~----~~~~v~~~~~~--G~~v~~~-----------------~---------~-------~~~ll~~v~~~~~ 131 (300)
+... | ..++++.+++. +..++.. . + .+.++.++++.
T Consensus 108 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-- 185 (234)
T 1yxy_A 108 DCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-- 185 (234)
T ss_dssp ECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--
T ss_pred cccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC--
Confidence 5421 1 24667666654 5554422 1 0 12345555443
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++||++.|||.|.+++.+++.+|||+|++||+|+.
T Consensus 186 --~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 186 --GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp --TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred --CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 69999999999999999999999999999999876
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=94.55 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEeeeecC----CCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTRSL-TERPFGVGVVLA----FPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~-~~~P~gvnl~~~----~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.+.+.+.++++|+. ++.|+.+-...+ ...+..++.+.+.|++.+.+. ..|+ .++++.++++|+..+..
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~-Dlp~ee~~~~~~~~~~~gl~~i~li 155 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIA-DVPVEESAPFSKAAKAHGIAPIFIA 155 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET-TSCGGGCHHHHHHHHHTTCEEECEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeC-CCCHhhHHHHHHHHHHcCCeEEEEE
Confidence 3556677889999987 788976522211 234778999999999998886 4443 46777888889876532
Q ss_pred ----------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ----------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ----------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
. ....++.++++.. ++||++.|||++++++.+++..|||||
T Consensus 156 aP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~---~~pv~vGfGI~~~e~~~~~~~~gADgv 232 (267)
T 3vnd_A 156 PPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN---APPPLLGFGIAEPEQVRAAIKAGAAGA 232 (267)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT---CCCEEECSSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEE
Confidence 0 1234566666655 799999999999999999999999999
Q ss_pred EeccccccCcc
Q 022271 161 CLGTRFVASEE 171 (300)
Q Consensus 161 ~~GT~fl~t~E 171 (300)
++||+|+-.-|
T Consensus 233 VVGSaiv~~i~ 243 (267)
T 3vnd_A 233 ISGSAVVKIIE 243 (267)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999987654
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-09 Score=94.94 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHhh-cCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 47 APDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~-~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
+.+.+.+.++++|+. .+.|+.+ |.+.....+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 80 ~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip-Dlp~ee~~~~~~~~~~~gl~~I~lva 158 (271)
T 3nav_A 80 TPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA-DVPTNESQPFVAAAEKFGIQPIFIAP 158 (271)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET-TSCGGGCHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHcCCeEEEEEC
Confidence 455677789999986 7889876 22223345778999999999998875 4553 46777778888875532
Q ss_pred ---------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 ---------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 ---------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.| ...++.++++.. ++||++.+||++++++.+++..|||||+
T Consensus 159 p~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvI 235 (271)
T 3nav_A 159 PTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAI 235 (271)
T ss_dssp TTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 01 234667777665 7999999999999999999999999999
Q ss_pred eccccccCcc
Q 022271 162 LGTRFVASEE 171 (300)
Q Consensus 162 ~GT~fl~t~E 171 (300)
+||+|+-.-|
T Consensus 236 VGSAiv~~i~ 245 (271)
T 3nav_A 236 SGSAVVKIIE 245 (271)
T ss_dssp ESHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999987654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=89.65 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHh-hcCCcEEeeeecCC------Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRS-LTERPFGVGVVLAF------PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~-~~~~P~gvnl~~~~------~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
.+.++--..-+-.|+ +.+.. .|+|-... |+ .+..+.+.+.|..++-.-.. .....+++.+.|...+
T Consensus 84 ~ta~eAv~~a~lare~~~~~~-~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d--d~~~akrl~~~G~~aV 160 (265)
T 1wv2_A 84 YDAVEAVRTCRLARELLDGHN-LVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD--DPIIARQLAEIGCIAV 160 (265)
T ss_dssp CSHHHHHHHHHHHHTTTTSCC-EEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS--CHHHHHHHHHSCCSEE
T ss_pred CCHHHHHHHHHHHHHHcCCCC-eEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCCCEE
Confidence 455544444445566 33332 46664431 11 23455666668887743222 3456777777777655
Q ss_pred ec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCC--CHHHHHHH
Q 022271 115 PQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA--HPEYKRKL 182 (300)
Q Consensus 115 ~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~--~~~~k~~i 182 (300)
-. ..++.+++++++.. ++|||++|||.+++|++.++.+|||||++||++..+ |++. ...|++++
T Consensus 161 mPlg~pIGsG~Gi~~~~lI~~I~e~~---~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a-~dP~~ma~af~~Av 236 (265)
T 1wv2_A 161 MPLAGLIGSGLGICNPYNLRIILEEA---KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA-KDPVMMAEAMKHAI 236 (265)
T ss_dssp EECSSSTTCCCCCSCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS-SSHHHHHHHHHHHH
T ss_pred EeCCccCCCCCCcCCHHHHHHHHhcC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC-CCHHHHHHHHHHHH
Confidence 32 23577899999876 899999999999999999999999999999999843 4443 56677776
Q ss_pred Hc
Q 022271 183 VE 184 (300)
Q Consensus 183 ~~ 184 (300)
..
T Consensus 237 ~a 238 (265)
T 1wv2_A 237 VA 238 (265)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-09 Score=97.13 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHhhc---------CCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHH---HHHCCC
Q 022271 47 APDYLRDLIRKTRSLT---------ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLE---AHSAGV 111 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~---------~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~---~~~~G~ 111 (300)
+++.+.+.++++|+.+ +.|+.|++...... .+.++.+.+.|++.|.++.+....+.... ..+.|.
T Consensus 186 ~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg 265 (336)
T 1f76_A 186 YGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGG 265 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSE
T ss_pred CHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCC
Confidence 4677788899998876 89999998754332 34578888999999998743211100000 011222
Q ss_pred eEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 112 KVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 112 ~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
..... ...+.+++++++.+.+ ++|||+.|||.|++|+.+++++|||+|++||+|+.
T Consensus 266 ~~g~~~~~~~~~~i~~i~~~~~~-~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 266 LSGRPLQLKSTEIIRRLSLELNG-RLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHTT-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 22210 1135678888888742 69999999999999999999999999999999998
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=102.15 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhh--------------------cCCc-EEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHH
Q 022271 46 EAPDYLRDLIRKTRSL--------------------TERP-FGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEE 101 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~--------------------~~~P-~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~ 101 (300)
.+++.+.+.++.+++. .++| +.|++.+.... .+.++.+.+.|++.|+++.....+.
T Consensus 231 q~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~ 310 (415)
T 3i65_A 231 QEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQIN 310 (415)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCC
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccc
Confidence 4678888888888764 2689 89999876653 4567888899999998873221110
Q ss_pred HHHHH-HHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 102 LVLEA-HSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 102 ~v~~~-~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++.. .+.|...... ...+.+++++++++.. ++|||+.|||.|++|+.+++.+|||+||+||+|+.-
T Consensus 311 dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~-~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~ 380 (415)
T 3i65_A 311 DIKSFENKKGGVSGAKLKDISTKFICEMYNYTNK-QIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN 380 (415)
T ss_dssp CCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTT-CSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH
T ss_pred cccccccccCCcCCccchHHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc
Confidence 01111 1234433321 1245788999988742 699999999999999999999999999999999864
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=93.05 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec-------
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------- 116 (300)
+++...+.++++|+.++.|+.++...+......++.+.+.|++.|.+. ..+ ..+++..+++.|+..+..
T Consensus 78 ~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~-d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~ 156 (262)
T 1rd5_A 78 TMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVP-DLPYVAAHSLWSEAKNNNLELVLLTTPAIPE 156 (262)
T ss_dssp CHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECT-TCBTTTHHHHHHHHHHTTCEECEEECTTSCH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEc-CCChhhHHHHHHHHHHcCCceEEEECCCCCH
Confidence 567778899999998899987753211000011334778888877765 222 245566666666553321
Q ss_pred ----------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 117 ----------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 117 ----------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
.+ .+.++.++++.. ++||++.|||.|++++.+++.+|||+|++||+|
T Consensus 157 e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai 233 (262)
T 1rd5_A 157 DRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAM 233 (262)
T ss_dssp HHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 01 234677777765 799999999999999999999999999999999
Q ss_pred ccCccc
Q 022271 167 VASEES 172 (300)
Q Consensus 167 l~t~Es 172 (300)
....|.
T Consensus 234 ~~~~~~ 239 (262)
T 1rd5_A 234 VRQLGE 239 (262)
T ss_dssp HHHHHS
T ss_pred HhHHHh
Confidence 988763
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=85.64 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=88.7
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+. ++.|+.+|++...+.+..++.+.+.|++.|.++.-.. ..++++.+++.|.+++..
T Consensus 42 ~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~ 121 (211)
T 3f4w_A 42 NAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVR 121 (211)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence 568888887 6899999999887666669999999999999874321 156777778888877631
Q ss_pred -------------c---------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -------------D---------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -------------~---------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. ..+..+.++++.+. ++||++.|||. ++++.+++.+|||+|.+||+++...
T Consensus 122 ~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~--~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~ 194 (211)
T 3f4w_A 122 LLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRR--KARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAA 194 (211)
T ss_dssp HHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCS--SCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCS
T ss_pred HHHHcCCCEEEEcCCCcccccCCCCHHHHHHHHHHcC--CCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCC
Confidence 0 12345566666542 69999999995 9999999999999999999988653
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=91.32 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec--
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~-- 116 (300)
.+.+.+.+.++++|+..+.|+.+ |.+.....+..++.+.+.|++.+.+. ..| ..++++.+++.|...+..
T Consensus 74 ~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~-Dl~~ee~~~~~~~~~~~gl~~i~lia 152 (271)
T 1ujp_A 74 MSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLA 152 (271)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEEC
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEec-CCCHHHHHHHHHHHHHcCCceEEEeC
Confidence 35567778899999888899877 32222234678888999999976654 333 246677777777654331
Q ss_pred -----------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 -----------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 -----------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.....++.++++.. ++||++.|||++++++.++ .|||||+
T Consensus 153 p~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGfGI~t~e~a~~~--~~ADgVI 227 (271)
T 1ujp_A 153 PTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVV 227 (271)
T ss_dssp TTCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEE
T ss_pred CCCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc---CCCEEEEcCCCCHHHHHHh--cCCCEEE
Confidence 01235667777665 7999999999999999996 9999999
Q ss_pred eccccccCcc
Q 022271 162 LGTRFVASEE 171 (300)
Q Consensus 162 ~GT~fl~t~E 171 (300)
+||+|.-..|
T Consensus 228 VGSAi~~~~~ 237 (271)
T 1ujp_A 228 VGSALVRALE 237 (271)
T ss_dssp ECHHHHHHHH
T ss_pred EChHHhcccc
Confidence 9999997754
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.69 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhh-------cCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcH-HHHH-HH-HHCCCeE
Q 022271 47 APDYLRDLIRKTRSL-------TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSE-ELVL-EA-HSAGVKV 113 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~-------~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~-~~v~-~~-~~~G~~v 113 (300)
+++.+.+.++.+++. ++.|+.|++.+.... .+.++.+.+.|++.|+++...... .... .. ...|...
T Consensus 197 ~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlS 276 (367)
T 3zwt_A 197 GKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLS 276 (367)
T ss_dssp SHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEE
T ss_pred CHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcC
Confidence 577888888877653 689999999876543 346788889999999876322110 0000 00 1233333
Q ss_pred eec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 114 VPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 114 ~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
... .-.+.++.++++.+.. ++|||+.|||.|++|+.+++.+|||+||+||.|+.
T Consensus 277 G~~i~p~a~~~v~~i~~~v~~-~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~ 332 (367)
T 3zwt_A 277 GKPLRDLSTQTIREMYALTQG-RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp EGGGHHHHHHHHHHHHHHTTT-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CcccchhHHHHHHHHHHHcCC-CceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 221 1135788888888742 69999999999999999999999999999999985
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=100.00 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=74.8
Q ss_pred cCCc-EEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHH-HHCCCeEeec--cChhchHHHHHHhhCCCC
Q 022271 62 TERP-FGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEA-HSAGVKVVPQ--DGLISLLPMVVDLIGDRD 134 (300)
Q Consensus 62 ~~~P-~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~-~~~G~~v~~~--~~~~~ll~~v~~~~~~~~ 134 (300)
++.| +.|++.+.... .+.++.+.+.|++.|+++.+.....-++.+ .+.|...... ...+.+++++++++.. +
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~-~ 373 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNK-Q 373 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTT-C
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCC-C
Confidence 3678 89998765442 345788889999999887543211001011 1233333221 1145788889888742 6
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+|||+.|||.|++|+.+++.+|||+||+||+|+.
T Consensus 374 iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~ 407 (443)
T 1tv5_A 374 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF 407 (443)
T ss_dssp SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 9999999999999999999999999999999997
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-09 Score=96.70 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred CccceecCCCCCCCCcHHHHHHH---HhCCceEE----ecCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCC
Q 022271 9 FEYGIVQAPLGPDISGPELVAAV---ANAGGLGL----LRAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~av---s~aGglG~----i~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~ 74 (300)
.+.||+. -.+ |.+..+++.++ .++|.-.. ++|++. .+++.+.+.++.+|+.+++|+.|++.+..
T Consensus 127 ~~~pviv-sI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~ 204 (345)
T 3oix_A 127 DSKNHFL-SLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYF 204 (345)
T ss_dssp TCCCCEE-EEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCC
T ss_pred CCCCEEE-Eec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 4567764 343 45555555444 44564312 244321 37899999999999999999999999875
Q ss_pred CcHHHHHHHHHcCC---cEEEEc--CCC---Cc--HHHHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEccC
Q 022271 75 PHNENIKAILSEKV---AVLQVS--WGE---YS--EELVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 75 ~~~~~~~~~~e~g~---~~i~~~--~G~---~~--~~~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
...+..+.+.+.++ ++|... .|. .. ...+..-...|...... .-.+.++.++++++.. ++|||+.||
T Consensus 205 ~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~-~ipIIg~GG 283 (345)
T 3oix_A 205 DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNP-SIQIIGTGG 283 (345)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCT-TSEEEEESS
T ss_pred CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCC-CCcEEEECC
Confidence 44555666666555 444322 010 00 00000001122222211 0125678888887632 699999999
Q ss_pred CCChHHHHHHHHCCCcEEEecccccc
Q 022271 143 IVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 143 I~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.|++|+.+++.+|||+||+||.|+.
T Consensus 284 I~s~~da~~~l~aGAd~V~igra~~~ 309 (345)
T 3oix_A 284 VXTGRDAFEHILCGASMVQIGTALHQ 309 (345)
T ss_dssp CCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CCChHHHHHHHHhCCCEEEEChHHHh
Confidence 99999999999999999999999765
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-09 Score=88.44 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=100.3
Q ss_pred CccccccCCccceecCCCCCCCCc---HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc--CCcEEeeeecCCC
Q 022271 1 MGWRGMLGFEYGIVQAPLGPDISG---PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP 75 (300)
Q Consensus 1 ~~~~~~lg~~~Pii~apM~~g~s~---~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~ 75 (300)
|++.+.|. +.|+|-- +. +.+. .+++.++.++ |+..+.. ++..++ ..+.++++|+.+ +.++|++...
T Consensus 1 ~~~~~~~~-~~~~i~~-~~-~~~~~~~~~~~~~~~~~-G~~~iev-~~~~~~-~~~~i~~ir~~~~~~~~ig~~~v~--- 71 (205)
T 1wa3_A 1 MKMEELFK-KHKIVAV-LR-ANSVEEAKEKALAVFEG-GVHLIEI-TFTVPD-ADTVIKELSFLKEKGAIIGAGTVT--- 71 (205)
T ss_dssp -CHHHHHH-HHCEEEE-EC-CSSHHHHHHHHHHHHHT-TCCEEEE-ETTSTT-HHHHHHHTHHHHHTTCEEEEESCC---
T ss_pred CcHHHHHh-hCCEEEE-Ee-cCCHHHHHHHHHHHHHC-CCCEEEE-eCCChh-HHHHHHHHHHHCCCCcEEEecccC---
Confidence 45555554 4566631 11 2332 2566665554 4666532 122332 234578888764 5677876432
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC------------------------hhchHHHHHHhhC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG------------------------LISLLPMVVDLIG 131 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~------------------------~~~ll~~v~~~~~ 131 (300)
+.+.++.+.+.|+++| ++.+. +.++++.+++.|+.+++... ...++.++++.+.
T Consensus 72 ~~~~~~~a~~~Gad~i-v~~~~-~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~ 149 (205)
T 1wa3_A 72 SVEQCRKAVESGAEFI-VSPHL-DEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFP 149 (205)
T ss_dssp SHHHHHHHHHHTCSEE-ECSSC-CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHcCCCEE-EcCCC-CHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCC
Confidence 4567888899999999 76565 46788888888888776310 1233444444331
Q ss_pred CCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 132 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 132 ~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++||++.|||. .+++.+++.+|||+|.+||.++.
T Consensus 150 --~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 150 --NVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp --TCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred --CCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC
Confidence 69999999996 78999999999999999999987
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-08 Score=86.87 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=90.2
Q ss_pred CceEEecC-CCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeE
Q 022271 35 GGLGLLRA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (300)
Q Consensus 35 GglG~i~~-~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v 113 (300)
+|+.++.. .-..+++++.+.++++++.+. ++. .++.+ +.++.+.+.|++.|.++....+.+.+++... |..+
T Consensus 41 ~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~-~~~-~l~v~----~~~~~a~~~gad~v~l~~~~~~~~~~~~~~~-~~~i 113 (221)
T 1yad_A 41 NEVDFIHIRERSKSAADILKLLDLIFEGGI-DKR-KLVMN----GRVDIALFSTIHRVQLPSGSFSPKQIRARFP-HLHI 113 (221)
T ss_dssp GGCSEEEECCTTSCHHHHHHHHHHHHHTTC-CGG-GEEEE----SCHHHHHTTTCCEEEECTTSCCHHHHHHHCT-TCEE
T ss_pred CCCCEEEEccCCCCHHHHHHHHHHHHHhcC-cCC-eEEEe----ChHHHHHHcCCCEEEeCCCccCHHHHHHHCC-CCEE
Confidence 44555532 112578888888999887643 443 55543 2456777888888887755333444444332 4333
Q ss_pred eec-----------------------c----------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 114 VPQ-----------------------D----------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 114 ~~~-----------------------~----------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
... . ..+.+++++++.+ ++||+++||| +.+++.+++..||++|
T Consensus 114 g~sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~nv~~~~~~Ga~gv 189 (221)
T 1yad_A 114 GRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPDRLRDVKQAGADGI 189 (221)
T ss_dssp EEEECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGGGHHHHHHTTCSEE
T ss_pred EEEcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHcCCCEE
Confidence 221 0 0234566666655 7999999999 9999999999999999
Q ss_pred EeccccccCcc-cCCCHHHHHHHH
Q 022271 161 CLGTRFVASEE-SYAHPEYKRKLV 183 (300)
Q Consensus 161 ~~GT~fl~t~E-s~~~~~~k~~i~ 183 (300)
.+||.|+.+++ ......+++.+.
T Consensus 190 ~vgs~i~~~~d~~~~~~~~~~~~~ 213 (221)
T 1yad_A 190 AVMSGIFSSAEPLEAARRYSRKLK 213 (221)
T ss_dssp EESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEhHHhhCCCCHHHHHHHHHHHHH
Confidence 99999998765 334455555554
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.77 E-value=7e-08 Score=86.58 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhh-cCCcEEee----eecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec-----
Q 022271 50 YLRDLIRKTRSL-TERPFGVG----VVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ----- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~-~~~P~gvn----l~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~----- 116 (300)
...+.++++|+. ++.|+.+- -+...+.+..++.+.+.|++.+.+. ..+ ...+++.++++|...+..
T Consensus 80 ~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~-d~~~e~~~~~~~~~~~~g~~~i~l~~p~t 158 (268)
T 1qop_A 80 QCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFICPPNA 158 (268)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEECTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 344778999988 78997652 1112234678999999999988775 333 356777888888764431
Q ss_pred ------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 117 ------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 117 ------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
.| ...++.++++.. ++||++.|||.+++++.+++..|||+|++||
T Consensus 159 ~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 159 DDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 00 245677777765 7999999999999999999999999999999
Q ss_pred ccccCcc
Q 022271 165 RFVASEE 171 (300)
Q Consensus 165 ~fl~t~E 171 (300)
++.-..|
T Consensus 236 ai~~~~~ 242 (268)
T 1qop_A 236 AIVKIIE 242 (268)
T ss_dssp HHHHHHH
T ss_pred HHhhhHh
Confidence 9988754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=94.70 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHH---HHHHHHHcC-CcEEEEcCCC----Cc----HH-HHHHHHHCCCeE
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNE---NIKAILSEK-VAVLQVSWGE----YS----EE-LVLEAHSAGVKV 113 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~---~~~~~~e~g-~~~i~~~~G~----~~----~~-~v~~~~~~G~~v 113 (300)
+++.+.+.++.+|+.+++|+.|++.+.....+ .++.+.+.+ ++.|++.-.. .. +. .+..-...|..-
T Consensus 177 ~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlS 256 (354)
T 4ef8_A 177 DFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLG 256 (354)
T ss_dssp SHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCC
Confidence 78999999999999999999999998654333 344445777 9988753110 00 00 000001112222
Q ss_pred eec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 114 VPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 114 ~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .-.+.++.++++... ++|||+.|||.+++|+.+++.+|||+||+||.++..
T Consensus 257 G~~i~p~a~~~i~~v~~~~~--~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~ 312 (354)
T 4ef8_A 257 GRYVLPTALANINAFYRRCP--GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEE 312 (354)
T ss_dssp GGGGHHHHHHHHHHHHHHCT--TSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhCC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHh
Confidence 111 124677888888742 699999999999999999999999999999999974
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=90.94 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++.++++.+. ++|||+.|||.|++|+.+++.+|||+||+||+|+.
T Consensus 267 ~v~~~~~~~~--~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y 311 (354)
T 3tjx_A 267 NINAFYRRCP--GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp HHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred HHHHHHHhcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh
Confidence 3445555442 79999999999999999999999999999999886
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=92.85 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHhCCceEEecCCCCCCHHH----------HHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcE
Q 022271 21 DISGPELVAAVANAGGLGLLRAPDWEAPDY----------LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAV 90 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~~~~~~~----------l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~ 90 (300)
.++..+++.++.++|.-++.... ..+.+. ..+.|+++++.++.|+-++.-.. +.+.++.+.+.|++.
T Consensus 27 ~~~~~~~a~~~~~~Ga~~i~~~e-~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~--~~~~~~~~~~aGad~ 103 (297)
T 2zbt_A 27 DVTTPEQAVIAEEAGAVAVMALE-RVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIG--HFVEAMILEAIGVDF 103 (297)
T ss_dssp EESSHHHHHHHHHHTCSEEEECS-SCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETT--CHHHHHHHHHTTCSE
T ss_pred eechHHHHHHHHHCCCcEEEecc-ccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccC--CHHHHHHHHHCCCCE
Confidence 46678999999999987763211 111110 12467788888889987766443 478889999999998
Q ss_pred EEEcCCCC-----------------------cHHHHHHHHHCCCeEeecc------------------------------
Q 022271 91 LQVSWGEY-----------------------SEELVLEAHSAGVKVVPQD------------------------------ 117 (300)
Q Consensus 91 i~~~~G~~-----------------------~~~~v~~~~~~G~~v~~~~------------------------------ 117 (300)
|..++... +.+. ....+.|...+...
T Consensus 104 v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~-~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~ 182 (297)
T 2zbt_A 104 IDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEA-LRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRE 182 (297)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHH-HHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCG
T ss_pred EeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHH-HHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCC
Confidence 84432110 1222 22345555444110
Q ss_pred -----------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 118 -----------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 118 -----------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
..+.++.++++.. ++||+ +.|||.+.+++.+++.+|||+|++||+++.+
T Consensus 183 ~~~~~~~~~~~~~~~~i~~l~~~~---~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~ 244 (297)
T 2zbt_A 183 DELMAYAKEIGAPFELVKWVHDHG---RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS 244 (297)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHS---SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred CCchhhhhcchhhHHHHHHHHHhc---CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 1234566677665 78998 9999999999999999999999999999865
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=84.41 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhc-CCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcH---HHHHHHHHCCCeEeec----
Q 022271 49 DYLRDLIRKTRSLT-ERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQ---- 116 (300)
Q Consensus 49 ~~l~~~i~~~r~~~-~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~---~~v~~~~~~G~~v~~~---- 116 (300)
+.+.+.++++|+.. +.|+.+ |.+.....+..++.+.+.|++.+.+. ..|++ ++++.++++|..++..
T Consensus 79 ~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~-dl~~ee~~~~~~~~~~~gl~~i~l~~p~ 157 (262)
T 2ekc_A 79 EDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP-DLPPEEAEELKAVMKKYVLSFVPLGAPT 157 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT-TCCHHHHHHHHHHHHHTTCEECCEECTT
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45557788998887 889877 21111123577888999999988775 44433 4556667788765431
Q ss_pred -------------------------cC---------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 117 -------------------------DG---------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 117 -------------------------~~---------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
.| ...++.++++.. ++||++.|||++++++.+ +..|||+|++
T Consensus 158 t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~---~~pv~vG~GI~t~e~~~~-~~~gADgvIV 233 (262)
T 2ekc_A 158 STRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC---DKPVVVGFGVSKKEHARE-IGSFADGVVV 233 (262)
T ss_dssp CCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC---CSCEEEESSCCSHHHHHH-HHTTSSEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHH-HHcCCCEEEE
Confidence 00 124566666655 799999999999999999 8899999999
Q ss_pred ccccccCcc
Q 022271 163 GTRFVASEE 171 (300)
Q Consensus 163 GT~fl~t~E 171 (300)
||+|.-..+
T Consensus 234 GSai~~~~~ 242 (262)
T 2ekc_A 234 GSALVKLAG 242 (262)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhhh
Confidence 999998754
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=83.88 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCC----CcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeec---
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAF----PHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ--- 116 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~----~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~--- 116 (300)
+.+...+.++++|+.++.|+.+-...+. ...+.++.+.+.|++.|.+.. .+ +..+++.+++.|..++..
T Consensus 64 ~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~~ 142 (248)
T 1geq_A 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVD-LPVFHAKEFTEIAREEGIKTVFLAAP 142 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT-CCGGGHHHHHHHHHHHTCEEEEEECT
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECC-CChhhHHHHHHHHHHhCCCeEEEECC
Confidence 4455678899999988888654321111 125788999999999998862 22 235555556666554321
Q ss_pred -----------------------c---C--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 117 -----------------------D---G--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 117 -----------------------~---~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
. + .+.++.++++.+ ++||++.|||.+++++.+++.+|||+|++
T Consensus 143 ~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 143 NTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp TCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 0 0 133566666665 79999999999999999999999999999
Q ss_pred ccccccCcc
Q 022271 163 GTRFVASEE 171 (300)
Q Consensus 163 GT~fl~t~E 171 (300)
||++....|
T Consensus 220 Gsai~~~~~ 228 (248)
T 1geq_A 220 GSALVKIIG 228 (248)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHhhHh
Confidence 999987653
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-08 Score=87.75 Aligned_cols=130 Identities=14% Similarity=0.211 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
.+.+.+.+.++++|+. .|+.+ |.+.....+..++.+.+.|++.+.+. ..|+ .++.+.++++|+..+..
T Consensus 73 ~~~~~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~Iip-DLP~eE~~~~~~~~~~~Gl~~I~lva 149 (252)
T 3tha_A 73 VDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVP-ELSFEESDDLIKECERYNIALITLVS 149 (252)
T ss_dssp CCHHHHHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECT-TCCGGGCHHHHHHHHHTTCEECEEEE
T ss_pred CCHHHHHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3556777777777753 46543 22222234677888888888888776 4553 45666677788776542
Q ss_pred ---------------------------cC--------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 ---------------------------DG--------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 ---------------------------~~--------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.| ...++.++++.. ++||++.+||++++++.++.. +||||+
T Consensus 150 P~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGfGIst~e~a~~~~~-~ADGVI 225 (252)
T 3tha_A 150 VTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT---NLPIFVGFGIQNNQDVKRMRK-VADGVI 225 (252)
T ss_dssp TTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHTT-TSSEEE
T ss_pred CCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc---CCcEEEEcCcCCHHHHHHHHh-cCCEEE
Confidence 11 123555666554 799999999999999988766 699999
Q ss_pred eccccccCcccCCCHHHHHHH
Q 022271 162 LGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 162 ~GT~fl~t~Es~~~~~~k~~i 182 (300)
+||+|+-.-|....+...+.+
T Consensus 226 VGSAiVk~i~~~~~~~~~~~~ 246 (252)
T 3tha_A 226 VGTSIVKCFKQGNLDIIMKDI 246 (252)
T ss_dssp ECHHHHHHTTSSCHHHHHHHH
T ss_pred ECHHHHHHHHhcCHHHHHHHH
Confidence 999999877655444444443
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=83.93 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----------cChhchHHHHHH-hhCCCC-CcEEEccCCCCh
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----------DGLISLLPMVVD-LIGDRD-IPIIAAGGIVDA 146 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~-~~~~~~-iPViaaGGI~~g 146 (300)
..+.+++.|..++-... +...+.+++.+.|...+-. ..+..+++++++ .. + +|||++|||+++
T Consensus 116 aa~~L~k~Gf~Vlpy~~--~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~---~~vPVI~~GGI~tp 190 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMG--PDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKA---SLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHHTTCEECCEEC--SCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTT---TSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEeeccC--CCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcC---CCCeEEEeCCCCCH
Confidence 34445555666552221 2235556665555544321 124567888887 44 7 999999999999
Q ss_pred HHHHHHHHCCCcEEEeccccccCcccCC--CHHHHHHHHc
Q 022271 147 RGYVAALSLGAQGICLGTRFVASEESYA--HPEYKRKLVE 184 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t~Es~~--~~~~k~~i~~ 184 (300)
+|++.++.+|||||++||++..+ +++. ..+|++++..
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a-~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEA-QDPPAMAEAFRLAVEA 229 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCC-CCHHHHHHHHHHHHHH
Confidence 99999999999999999999843 4343 5667776654
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=87.83 Aligned_cols=178 Identities=14% Similarity=0.201 Sum_probs=106.4
Q ss_pred CCCcHHHHHHHHhCCceEE-ecC---------CC---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcC
Q 022271 21 DISGPELVAAVANAGGLGL-LRA---------PD---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~-i~~---------~~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g 87 (300)
+++..+++.++.++|.-.+ .-+ .+ +.+++ .++++++.++.|+-+|.... +.+.++.+.+.|
T Consensus 27 ~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~----~i~~I~~~~~iPv~~k~r~g--~~~~~~~~~a~G 100 (305)
T 2nv1_A 27 DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPT----IVEEVMNAVSIPVMAKARIG--HIVEARVLEAMG 100 (305)
T ss_dssp EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHH----HHHHHHHHCSSCEEEEECTT--CHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHH----HHHHHHHhCCCCEEeccccc--chHHHHHHHHCC
Confidence 3567899999999987766 221 01 12343 45556666788988777642 256677778888
Q ss_pred CcEEEEcC----------------CCC-------cHHHHHHHHHCCCeEeec----------------------------
Q 022271 88 VAVLQVSW----------------GEY-------SEELVLEAHSAGVKVVPQ---------------------------- 116 (300)
Q Consensus 88 ~~~i~~~~----------------G~~-------~~~~v~~~~~~G~~v~~~---------------------------- 116 (300)
++.|..+. |.+ +.+..... +.|...+..
T Consensus 101 Ad~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~-~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~g 179 (305)
T 2nv1_A 101 VDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRI-AEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVA 179 (305)
T ss_dssp CSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHH-HTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHH-HCCCCEEEeccccCccchHHHHhhhhhhhccchhhcc
Confidence 88886321 110 12223222 456544321
Q ss_pred -------------cChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCccc-CCCHHHHH
Q 022271 117 -------------DGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKR 180 (300)
Q Consensus 117 -------------~~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es-~~~~~~k~ 180 (300)
...+.+++++++.. ++||+ +.|||.+++++.+++.+|||+|++||+|+.+.+. .....+++
T Consensus 180 i~~~~~~~~~~~~~~~~~~i~~i~~~~---~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~ 256 (305)
T 2nv1_A 180 MSEDELMTEAKNLGAPYELLLQIKKDG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVE 256 (305)
T ss_dssp SCGGGHHHHHHHHTCCHHHHHHHHHHT---SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHH
T ss_pred ccchhhhcccccccccHHHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHH
Confidence 12345677777765 79999 9999999999999999999999999999987542 24566777
Q ss_pred HHHcCCCcceEEEecccCCCCCCCceecCh
Q 022271 181 KLVEMDKTEYTDVFGRARWPGAPHRVLQTP 210 (300)
Q Consensus 181 ~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~ 210 (300)
.+.+..+.+....++ ...|.+.|++...
T Consensus 257 ~~~~~~~~~~~~~~~--~~~g~~~~~~~~~ 284 (305)
T 2nv1_A 257 ATTHFTDYKLIAELS--KELGTAMKGIEIS 284 (305)
T ss_dssp HHHTTTCHHHHHHHT--SCC----------
T ss_pred HHHHhcChhhHHHHH--HHhhhhhcCCChh
Confidence 776655443111111 2246777777533
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.1e-07 Score=79.46 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHH---HHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-CCc-
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPD---YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYS- 99 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~---~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-~~~- 99 (300)
.++|.+..++|.-+ |+.. .++. .-.+.++++|+.++.|+-.+=+. -+..+++.+.+.|++.|.+... .++
T Consensus 75 ~~~A~~y~~~GA~~-isvl--td~~~f~Gs~~~l~~ir~~v~lPvl~kdfi--id~~qv~~A~~~GAD~VlLi~a~l~~~ 149 (272)
T 3qja_A 75 AKLAQAYQDGGARI-VSVV--TEQRRFQGSLDDLDAVRASVSIPVLRKDFV--VQPYQIHEARAHGADMLLLIVAALEQS 149 (272)
T ss_dssp HHHHHHHHHTTCSE-EEEE--CCGGGHHHHHHHHHHHHHHCSSCEEEESCC--CSHHHHHHHHHTTCSEEEEEGGGSCHH
T ss_pred HHHHHHHHHcCCCE-EEEe--cChhhcCCCHHHHHHHHHhCCCCEEECccc--cCHHHHHHHHHcCCCEEEEecccCCHH
Confidence 47888777766544 3321 1222 22346788888888898544221 2355688899999999987322 222
Q ss_pred --HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 100 --EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 100 --~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
.++++.+++.|..++.. ...+..+.++++.+.. ++|||+.|||.+++++
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~-~~pvVaegGI~t~edv 228 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPS-SVIRIAESGVRGTADL 228 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCT-TSEEEEESCCCSHHHH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCcc-cCEEEEECCCCCHHHH
Confidence 24556667788876543 0123455666665521 6999999999999999
Q ss_pred HHHHHCCCcEEEeccccccCc
Q 022271 150 VAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 150 ~aal~lGAdgV~~GT~fl~t~ 170 (300)
..++.+||+||.+|++|+.+.
T Consensus 229 ~~l~~~GadgvlVGsal~~a~ 249 (272)
T 3qja_A 229 LAYAGAGADAVLVGEGLVTSG 249 (272)
T ss_dssp HHHHHTTCSEEEECHHHHTCS
T ss_pred HHHHHcCCCEEEEcHHHhCCC
Confidence 999999999999999999875
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=81.44 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=87.7
Q ss_pred cHHHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHH
Q 022271 24 GPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL 102 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~ 102 (300)
..+.+.++.++| +..+... ...+++.+.+.++++++.+. +++++++.+ +.++.+.+.|++.|.+..+..+.+.
T Consensus 28 ~~~~~~~~~~~G-~~~i~l~~~~~~~~~~~~~~~~l~~~~~-~~~v~v~v~----~~~~~a~~~gad~v~l~~~~~~~~~ 101 (215)
T 1xi3_A 28 EVESVREALEGG-ATAIQMRIKNAPTREMYEIGKTLRQLTR-EYDALFFVD----DRVDVALAVDADGVQLGPEDMPIEV 101 (215)
T ss_dssp HHHHHHHHHHTT-CSEEEECCCSCCHHHHHHHHHHHHHHHH-HTTCEEEEE----SCHHHHHHHTCSEEEECTTSCCHHH
T ss_pred HHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEc----ChHHHHHHcCCCEEEECCccCCHHH
Confidence 346777777766 4444221 12467777777777776543 245555553 3456777888888877544333333
Q ss_pred HHHHH-------------------HCCCeEeec----c---------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHH
Q 022271 103 VLEAH-------------------SAGVKVVPQ----D---------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 103 v~~~~-------------------~~G~~v~~~----~---------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~ 150 (300)
+++++ +.|+..+.. . ..+..+.++++.+ ++||+++|||. .+++.
T Consensus 102 ~~~~~~~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~ 177 (215)
T 1xi3_A 102 AKEIAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAR 177 (215)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHH
T ss_pred HHHhCCCCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHH
Confidence 33332 223322210 0 1345666776665 79999999999 99999
Q ss_pred HHHHCCCcEEEeccccccCc
Q 022271 151 AALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 151 aal~lGAdgV~~GT~fl~t~ 170 (300)
+++.+||++|.+||.+..++
T Consensus 178 ~~~~~Ga~gv~vgs~i~~~~ 197 (215)
T 1xi3_A 178 EVLKTGVDGIAVISAVMGAE 197 (215)
T ss_dssp HHHTTTCSEEEESHHHHTSS
T ss_pred HHHHcCCCEEEEhHHHhCCC
Confidence 99999999999999998765
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-07 Score=78.68 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=97.1
Q ss_pred CcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHH
Q 022271 23 SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL 102 (300)
Q Consensus 23 s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~ 102 (300)
...+++.++.+ ||+.++-. .+.+++.. +.++++++ .+..++.+.+. ..+.++.+++.|++++... +. ..++
T Consensus 26 ~~~~~~~~l~~-gGv~~iel-~~k~~~~~-~~i~~~~~-~~~~~gag~vl---~~d~~~~A~~~GAd~v~~~-~~-d~~v 96 (207)
T 2yw3_A 26 DLLGLARVLEE-EGVGALEI-TLRTEKGL-EALKALRK-SGLLLGAGTVR---SPKEAEAALEAGAAFLVSP-GL-LEEV 96 (207)
T ss_dssp CHHHHHHHHHH-TTCCEEEE-ECSSTHHH-HHHHHHTT-SSCEEEEESCC---SHHHHHHHHHHTCSEEEES-SC-CHHH
T ss_pred HHHHHHHHHHH-cCCCEEEE-eCCChHHH-HHHHHHhC-CCCEEEeCeEe---eHHHHHHHHHcCCCEEEcC-CC-CHHH
Confidence 34567777655 55887754 24556554 77888888 77788888754 4688999999999999765 33 4566
Q ss_pred HHHHHHCCCeEeec--------------------c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 103 VLEAHSAGVKVVPQ--------------------D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 103 v~~~~~~G~~v~~~--------------------~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
++..++.|..++.. . +-...+.+++..+. ++|+++.|||. .+.+.+++.+||
T Consensus 97 ~~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~fpa~~~gG~~~lk~l~~~~~--~ipvvaiGGI~-~~n~~~~l~aGa 173 (207)
T 2yw3_A 97 AALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPFQGVRVLRAYAEVFP--EVRFLPTGGIK-EEHLPHYAALPN 173 (207)
T ss_dssp HHHHHHHTCCEEEEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHHHCT--TCEEEEBSSCC-GGGHHHHHTCSS
T ss_pred HHHHHHhCCCEEecCCCHHHHHHHHHCCCCEEEEecCccccCHHHHHHHHhhCC--CCcEEEeCCCC-HHHHHHHHhCCC
Confidence 66666666655432 1 12355666666552 79999999997 699999999999
Q ss_pred cEEEecccccc
Q 022271 158 QGICLGTRFVA 168 (300)
Q Consensus 158 dgV~~GT~fl~ 168 (300)
++|.+||.++.
T Consensus 174 ~~vavgSai~~ 184 (207)
T 2yw3_A 174 LLAVGGSWLLQ 184 (207)
T ss_dssp BSCEEESGGGS
T ss_pred cEEEEehhhhC
Confidence 99999999876
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.3e-07 Score=75.70 Aligned_cols=154 Identities=12% Similarity=0.141 Sum_probs=105.1
Q ss_pred CccccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeec---CCCcH
Q 022271 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL---AFPHN 77 (300)
Q Consensus 1 ~~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~---~~~~~ 77 (300)
|++...|. +.|||-|= -...+|-.++..-=-..|+..+ +...+.+.++++++..+.+| |++=. -.+++
T Consensus 1 ~~~~~~~~-~~piI~Av----r~~~~l~~al~s~~~~ifll~g---~i~~l~~~v~~lk~~~K~v~-Vh~Dli~Gls~d~ 71 (192)
T 3kts_A 1 MSLELPFS-NQSIIPAA----HNQKDMEKILELDLTYMVMLET---HVAQLKALVKYAQAGGKKVL-LHADLVNGLKNDD 71 (192)
T ss_dssp --CCCSCT-TCCEEEEE----SSSHHHHHHTTSSCCEEEECSE---ETTTHHHHHHHHHHTTCEEE-EEGGGEETCCCSH
T ss_pred Cchhhhhh-cCCEEEEe----cCHHHHHHHHcCCCCEEEEecC---cHHHHHHHHHHHHHcCCeEE-EecCchhccCCcH
Confidence 55444443 68998521 2445666655433345555443 44667788888888765554 44221 23457
Q ss_pred HHHHHHHHc-CCcEEEEcCCCCcHHHHHHHHHCCCeEeec---------------------------cCh-hchHHHHHH
Q 022271 78 ENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ---------------------------DGL-ISLLPMVVD 128 (300)
Q Consensus 78 ~~~~~~~e~-g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~---------------------------~~~-~~ll~~v~~ 128 (300)
..++.+.+. +|+.|... ....+..+++.|...+.. .+. -..+.++++
T Consensus 72 ~ai~fL~~~~~pdGIIsT----k~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiLPGi~p~iI~~i~~ 147 (192)
T 3kts_A 72 YAIDFLCTEICPDGIIST----RGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQ 147 (192)
T ss_dssp HHHHHHHHTTCCSEEEES----CHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEeC----cHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEECCchhHHHHHHHHH
Confidence 777877774 89988775 246788889999988764 111 134555666
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+ ++|||++|+|.|.+++.+++..||++|..|++.|+--
T Consensus 148 ~~---~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 148 KL---HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp HH---CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred hc---CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence 65 8999999999999999999999999999999999863
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-08 Score=88.33 Aligned_cols=157 Identities=19% Similarity=0.259 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHhCCceE--Eec--------CCC---CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 22 ISGPELVAAVANAGGLG--LLR--------APD---WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 22 ~s~~~la~avs~aGglG--~i~--------~~~---~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
+.++++|..-.++|.-. +|- .++ ..++ +.|+++|+..+.|+-.+.-.. +.+.++.+.+.|+
T Consensus 28 ~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~----~~i~~i~~~v~iPvl~k~~i~--~ide~qil~aaGA 101 (297)
T 4adt_A 28 VKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDP----LKIEEIRKCISINVLAKVRIG--HFVEAQILEELKV 101 (297)
T ss_dssp ESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCH----HHHHHHHTTCCSEEEEEEETT--CHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCH----HHHHHHHHhcCCCEEEeccCC--cHHHHHHHHHcCC
Confidence 56789988877777643 341 111 0134 467788888889997664332 2667888889999
Q ss_pred cEEEEcCCCCcHHHHHHHHH----------------------CCCeEeecc-----------------------------
Q 022271 89 AVLQVSWGEYSEELVLEAHS----------------------AGVKVVPQD----------------------------- 117 (300)
Q Consensus 89 ~~i~~~~G~~~~~~v~~~~~----------------------~G~~v~~~~----------------------------- 117 (300)
++|..+.+..+.++++.+++ .|..++...
T Consensus 102 D~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~ 181 (297)
T 4adt_A 102 DMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLD 181 (297)
T ss_dssp SEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhcccc
Confidence 99955443222233333322 233222111
Q ss_pred ------------ChhchHHHHHHhhCCCCCcEE--EccCCCChHHHHHHHHCCCcEEEeccccccCccc-CCCHHHHHHH
Q 022271 118 ------------GLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKL 182 (300)
Q Consensus 118 ------------~~~~ll~~v~~~~~~~~iPVi--aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es-~~~~~~k~~i 182 (300)
..+.+++++++.+ ++||+ +.|||.+++++..++.+|||+|++||.|+.+..- .....+++.+
T Consensus 182 ~d~L~t~~~~~~~~~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 182 ESEVYNFAKKLRAPIDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp TTTHHHHHHHHTCCHHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 1235677777776 67876 9999999999999999999999999999976421 1234455555
Q ss_pred HcCCC
Q 022271 183 VEMDK 187 (300)
Q Consensus 183 ~~a~~ 187 (300)
.+..+
T Consensus 259 ~~~~~ 263 (297)
T 4adt_A 259 SNFNN 263 (297)
T ss_dssp HTTTC
T ss_pred HhhCC
Confidence 55443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=84.82 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=88.8
Q ss_pred CccceecCCCCCCCCcHH----HHHHHHhCCceEEecC---CC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHH
Q 022271 9 FEYGIVQAPLGPDISGPE----LVAAVANAGGLGLLRA---PD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~----la~avs~aGglG~i~~---~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~ 80 (300)
++.|++-.+. +..+.+ ++..+.++|+-+++.. +. ....++..+.++.+|++.+..+-+-. ...++.+.+
T Consensus 64 ~~~~~~pn~~--~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~-~~~~~~~~a 140 (264)
T 1xm3_A 64 SKYTLLPNTA--GASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLP-YTSDDVVLA 140 (264)
T ss_dssp GGSEEEEECT--TCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEE-EECSCHHHH
T ss_pred cCCeEcCCcc--ccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEE-EcCCCHHHH
Confidence 3555544342 344443 5666666776665311 10 11124455666666665322221110 112334567
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
+.+.+.++++|.. .|.... ...| .....++.++++.. ++||++.|||.+++++.+++.+|||||
T Consensus 141 ~~~~~~gad~v~~-~~~~~G------t~~~------~~~~~~l~~i~~~~---~iPviv~gGI~t~eda~~~~~~GAdgV 204 (264)
T 1xm3_A 141 RKLEELGVHAIMP-GASPIG------SGQG------ILNPLNLSFIIEQA---KVPVIVDAGIGSPKDAAYAMELGADGV 204 (264)
T ss_dssp HHHHHHTCSCBEE-CSSSTT------CCCC------CSCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHhCCCEEEE-CCcccC------CCCC------CCCHHHHHHHHhcC---CCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 7777778877733 221100 0001 11355778888765 899999999999999999999999999
Q ss_pred EeccccccCccc-CCCHHHHHHHH
Q 022271 161 CLGTRFVASEES-YAHPEYKRKLV 183 (300)
Q Consensus 161 ~~GT~fl~t~Es-~~~~~~k~~i~ 183 (300)
++||+|+.+... .....+++.+.
T Consensus 205 iVGSAi~~a~dp~~~~~~l~~~v~ 228 (264)
T 1xm3_A 205 LLNTAVSGADDPVKMARAMKLAVE 228 (264)
T ss_dssp EESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEcHHHhCCCCHHHHHHHHHHHHH
Confidence 999999876431 12334444444
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.6e-07 Score=79.51 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=98.4
Q ss_pred cHHHHHHHHhCCceEE--ecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc
Q 022271 24 GPELVAAVANAGGLGL--LRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (300)
Q Consensus 24 ~~~la~avs~aGglG~--i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~ 99 (300)
..++|.+..++|.-++ +....+. +++ .++++|+.++.|+-.+=+.. +..++..+.+.|++.|.+.....+
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~Gs~~----~L~~ir~~v~lPVl~Kdfi~--d~~qi~ea~~~GAD~VlLi~a~L~ 154 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQGAPE----FLTAARQACSLPALRKDFLF--DPYQVYEARSWGADCILIIMASVD 154 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTCCCHH----HHHHHHHTSSSCEEEESCCC--STHHHHHHHHTTCSEEEEETTTSC
T ss_pred HHHHHHHHHHCCCCEEEEeccccccCCCHH----HHHHHHHhcCCCEEECCccC--CHHHHHHHHHcCCCEEEEcccccC
Confidence 3588888888775443 3222221 443 56778888889986554433 344678888999999887643332
Q ss_pred ----HHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 100 ----EELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 100 ----~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++++.+++.|..++.. ...+....++++.+.. ++|||+.|||.+++
T Consensus 155 ~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~-~~~vIaesGI~t~e 233 (272)
T 3tsm_A 155 DDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPS-DRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCT-TSEEEEESSCCSHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCC-CCcEEEECCCCCHH
Confidence 25566677888876643 0123445556655532 69999999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCcc
Q 022271 148 GYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
|+..+..+|||||.+|++|+.++.
T Consensus 234 dv~~l~~~Ga~gvLVG~almr~~d 257 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIGESLMRQHD 257 (272)
T ss_dssp HHHHHHTTTCCEEEECHHHHTSSC
T ss_pred HHHHHHHcCCCEEEEcHHHcCCcC
Confidence 999999999999999999998864
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=80.66 Aligned_cols=116 Identities=15% Similarity=0.213 Sum_probs=91.3
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC----CCcHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG----EYSEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G----~~~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+.++.|+.+-|+..+| +.+++.+.+.|++.|.++.. ..+.+.++.+++.|..++..
T Consensus 52 ~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~ 130 (230)
T 1tqj_A 52 LIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEY 130 (230)
T ss_dssp HHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTT
T ss_pred HHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHH
Confidence 67888999888899999999765 45789999999999999866 33567888888898887643
Q ss_pred -----------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -----------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -----------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
...+..+.++++... +.++||.+.|||.. +.+..+...|||++.+||+++..+
T Consensus 131 ~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~ 208 (230)
T 1tqj_A 131 VLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAP 208 (230)
T ss_dssp TGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSS
T ss_pred HHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCC
Confidence 012345566665541 12699999999997 889999999999999999988753
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-07 Score=80.72 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=91.5
Q ss_pred cHHHHHHHHhCCceEEecCCC----C-CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC--
Q 022271 24 GPELVAAVANAGGLGLLRAPD----W-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-- 96 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~----~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-- 96 (300)
..+++.+..++|. -.+.... + ..+ .. +.++++++.++.|+-+|..... .+.++.+++.|++.|.++..
T Consensus 34 ~~~~a~~~~~~Ga-d~i~v~~~d~~~~~~~-~~-~~i~~i~~~~~ipv~v~ggI~~--~~~~~~~l~~Gad~V~lg~~~l 108 (244)
T 1vzw_A 34 PLEAALAWQRSGA-EWLHLVDLDAAFGTGD-NR-ALIAEVAQAMDIKVELSGGIRD--DDTLAAALATGCTRVNLGTAAL 108 (244)
T ss_dssp HHHHHHHHHHTTC-SEEEEEEHHHHHTSCC-CH-HHHHHHHHHCSSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHHcCC-CEEEEecCchhhcCCC-hH-HHHHHHHHhcCCcEEEECCcCC--HHHHHHHHHcCCCEEEECchHh
Confidence 3477777777763 3332100 0 011 12 6788888888899988876643 44577777778877765321
Q ss_pred -C------------------------------------CcHHHHHHHHHCCCeEe--ec-------c-ChhchHHHHHHh
Q 022271 97 -E------------------------------------YSEELVLEAHSAGVKVV--PQ-------D-GLISLLPMVVDL 129 (300)
Q Consensus 97 -~------------------------------------~~~~~v~~~~~~G~~v~--~~-------~-~~~~ll~~v~~~ 129 (300)
. .+.+.++.+.+.|+..+ +. . ..+.++.++++.
T Consensus 109 ~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~ 188 (244)
T 1vzw_A 109 ETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAA 188 (244)
T ss_dssp HCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHT
T ss_pred hCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHh
Confidence 0 11233344444444311 11 0 135678888877
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHC---CCcEEEeccccccCc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSL---GAQGICLGTRFVASE 170 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~l---GAdgV~~GT~fl~t~ 170 (300)
+ ++|||+.|||.+.+++.+++.+ |||+|++||+|+..+
T Consensus 189 ~---~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~ 229 (244)
T 1vzw_A 189 T---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKA 229 (244)
T ss_dssp C---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred c---CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCC
Confidence 6 7999999999999999999999 999999999999764
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=80.15 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=91.6
Q ss_pred cHHHHHHHHhCCceEEecCC----CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--
Q 022271 24 GPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-- 97 (300)
Q Consensus 24 ~~~la~avs~aGglG~i~~~----~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~-- 97 (300)
..+++.+..++| ...+.-. .+...... +.++++++.++.|+-+|..... .+.++.+++.|++.|.+....
T Consensus 33 ~~~~a~~~~~~G-ad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~--~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDG-AEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRD--DESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTT-CSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcC-CCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHcCCCEEEECchHhh
Confidence 347777777776 3333210 01011122 6788888888899988877643 456777777888877664311
Q ss_pred -C----------------------------------------cHHHHHHHHHCCCeEe--ec---c-----ChhchHHHH
Q 022271 98 -Y----------------------------------------SEELVLEAHSAGVKVV--PQ---D-----GLISLLPMV 126 (300)
Q Consensus 98 -~----------------------------------------~~~~v~~~~~~G~~v~--~~---~-----~~~~ll~~v 126 (300)
| +.+.++.+.+.|+..+ +. . ..+.++.++
T Consensus 109 ~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l 188 (244)
T 2y88_A 109 NPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGV 188 (244)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHH
T ss_pred ChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHH
Confidence 0 1233333444443321 11 0 134577777
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHC---CCcEEEeccccccCcc
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQGICLGTRFVASEE 171 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~l---GAdgV~~GT~fl~t~E 171 (300)
++.+ ++|||+.|||.+.+++.+++.+ |||+|++||+|+..+.
T Consensus 189 ~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~ 233 (244)
T 2y88_A 189 ADRT---DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRF 233 (244)
T ss_dssp HTTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred HHhC---CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCc
Confidence 7665 7999999999999999999999 9999999999998654
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-06 Score=74.45 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=85.3
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC--C--CcHHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--E--YSEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G--~--~~~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+.++.|+.+.++.+. ..+.++.+.+.|++.|.++.. . .+.++++.+++.|..++..
T Consensus 58 ~~i~~l~~~~~~~~~v~l~vnd-~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~ 136 (230)
T 1rpx_A 58 LVVDSLRPITDLPLDVHLMIVE-PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEY 136 (230)
T ss_dssp HHHHHHGGGCCSCEEEEEESSS-HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTT
T ss_pred HHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 5677788887789999998875 346888899999999998854 2 1356788888887665432
Q ss_pred --------------c---C------hhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 --------------D---G------LISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 --------------~---~------~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. + .+..+.++++.+. ..++|+++.|||. .+.+..++..|||+|.+||.+..++
T Consensus 137 ~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~ 214 (230)
T 1rpx_A 137 VLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAP 214 (230)
T ss_dssp TTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred HHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCC
Confidence 0 0 1123344454431 1158999999998 7899899999999999999988653
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=80.05 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCC---------cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFP---------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~---------~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
-+.+.++.+|+..+.|++|.+..... ..+.++.+.+.|++.|.++.|.... ...... ....+
T Consensus 196 ~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~--------~~~~~~-~~~~~ 266 (340)
T 3gr7_A 196 FLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVP--------ARMNVY-PGYQV 266 (340)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSC--------CCCCCC-TTTTH
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccC--------CCCCCC-ccccH
Confidence 46677888898889999999987521 1466788888999999998654211 000000 01145
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.++.++++.+ ++|||+.|||.|++++.++|..| ||+|++|+.|+..++
T Consensus 267 ~~~~~ik~~~---~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPd 315 (340)
T 3gr7_A 267 PFAELIRREA---DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPY 315 (340)
T ss_dssp HHHHHHHHHT---TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred HHHHHHHHHc---CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCch
Confidence 6778888887 79999999999999999999999 999999999998743
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=74.03 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=88.5
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLE 105 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~ 105 (300)
+.+.+..++| +..+... ..+++.+ +.++++++..+.|+-|+.-.. .+.+.++.+.+.|++.|.+ |....++++.
T Consensus 23 ~~~~~~~~~G-~~~i~l~-~~~~~~~-~~i~~i~~~~~~~l~vg~g~~-~~~~~i~~a~~~Gad~V~~--~~~~~~~~~~ 96 (212)
T 2v82_A 23 AHVGAVIDAG-FDAVEIP-LNSPQWE-QSIPAIVDAYGDKALIGAGTV-LKPEQVDALARMGCQLIVT--PNIHSEVIRR 96 (212)
T ss_dssp HHHHHHHHHT-CCEEEEE-TTSTTHH-HHHHHHHHHHTTTSEEEEECC-CSHHHHHHHHHTTCCEEEC--SSCCHHHHHH
T ss_pred HHHHHHHHCC-CCEEEEe-CCChhHH-HHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHcCCCEEEe--CCCCHHHHHH
Confidence 4555555544 5555432 2344443 456666655566655533221 2457899999999999964 4445667777
Q ss_pred HHHCCCeEeec--------------------cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 106 AHSAGVKVVPQ--------------------DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 106 ~~~~G~~v~~~--------------------~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.++.|..++.. .+ .+..+.++++.+. .++||++.|||. .+++.+++.+||++|.
T Consensus 97 ~~~~g~~~~~g~~t~~e~~~a~~~G~d~v~v~~t~~~g~~~~~~l~~~~~-~~ipvia~GGI~-~~~i~~~~~~Ga~gv~ 174 (212)
T 2v82_A 97 AVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLP-SDIAVFAVGGVT-PENLAQWIDAGCAGAG 174 (212)
T ss_dssp HHHTTCEEECEECSHHHHHHHHHTTCSEEEETTHHHHCHHHHHHHHTTSC-TTCEEEEESSCC-TTTHHHHHHHTCSEEE
T ss_pred HHHcCCCEEeecCCHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHHHhcc-CCCeEEEeCCCC-HHHHHHHHHcCCCEEE
Confidence 77777664421 10 1244555555441 149999999997 9999999999999999
Q ss_pred eccccccC
Q 022271 162 LGTRFVAS 169 (300)
Q Consensus 162 ~GT~fl~t 169 (300)
+||.|+.+
T Consensus 175 vGsai~~~ 182 (212)
T 2v82_A 175 LGSDLYRA 182 (212)
T ss_dssp ECTTTCCT
T ss_pred EChHHhCC
Confidence 99999876
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-06 Score=73.49 Aligned_cols=142 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred cHHHHHHHHhCCceE--EecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC---C
Q 022271 24 GPELVAAVANAGGLG--LLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E 97 (300)
Q Consensus 24 ~~~la~avs~aGglG--~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G---~ 97 (300)
..+++.+..++|.=. +.... .+.......+.++++++.++.|+-+|.... +.+.++.+++.|++.|.+... .
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~--~~~~~~~~~~~Gad~V~lg~~~l~~ 109 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIH--DFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCC--SHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCC--CHHHHHHHHHcCCCEEEEChHHHhC
Confidence 358888888887522 22111 111223345667888887888988876553 234466666666666554210 0
Q ss_pred ------------------------------------------CcHHHHHHHHHCCCe-Ee-ec---c-----ChhchHHH
Q 022271 98 ------------------------------------------YSEELVLEAHSAGVK-VV-PQ---D-----GLISLLPM 125 (300)
Q Consensus 98 ------------------------------------------~~~~~v~~~~~~G~~-v~-~~---~-----~~~~ll~~ 125 (300)
.+.+.++.+.+.|+. ++ +. . ..+.++.+
T Consensus 110 p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~ 189 (253)
T 1thf_D 110 PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF 189 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHH
T ss_pred hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHH
Confidence 122344444455533 22 11 1 13567777
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++.+ ++|||+.|||.+.+++.+++..|||+|++||+|+..+
T Consensus 190 l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~ 231 (253)
T 1thf_D 190 VRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 231 (253)
T ss_dssp HGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTC
T ss_pred HHHhc---CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCC
Confidence 77765 7999999999999999999999999999999999753
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.42 E-value=8.4e-07 Score=78.90 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHhCCceEEecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCC
Q 022271 22 ISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~~-------------~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~ 88 (300)
+.+++.|...-+||...+....+ +.+|+ .|+++++..+.|+--.... .+...++.+.+.|+
T Consensus 18 v~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~----~I~~I~~aVsIPVm~k~ri--gh~~EAqilea~Ga 91 (291)
T 3o07_A 18 VVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPK----MIKDIMNSVSIPVMAKVRI--GHFVEAQIIEALEV 91 (291)
T ss_dssp ESSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHH----HHHHHHTTCSSCEEEEEET--TCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHH----HHHHHHHhCCCCeEEEEec--CcHHHHHHHHHcCC
Confidence 67889999888899888765421 22453 6778888888887333222 22455667777788
Q ss_pred cEEEEcCC----------------CC-------cHHHHHHHHHCCCeEeec-----------------------------
Q 022271 89 AVLQVSWG----------------EY-------SEELVLEAHSAGVKVVPQ----------------------------- 116 (300)
Q Consensus 89 ~~i~~~~G----------------~~-------~~~~v~~~~~~G~~v~~~----------------------------- 116 (300)
|+|.-+-. .| ..+...++ +.|..++-+
T Consensus 92 D~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri-~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~ 170 (291)
T 3o07_A 92 DYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRI-NEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQL 170 (291)
T ss_dssp SEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTC
T ss_pred CEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHH-HCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 87743211 11 11222222 234444332
Q ss_pred -------------cChhchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHH
Q 022271 117 -------------DGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKR 180 (300)
Q Consensus 117 -------------~~~~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~ 180 (300)
...+.++.++++.. ++|| |++|||.|++++..++.+|||||++|+..+.+..-. ....|++
T Consensus 171 ~t~~el~~~a~~~~ad~elI~~Ike~~---~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~ 247 (291)
T 3o07_A 171 KSEDDIAKVAEEMRVPVSLLKDVLEKG---KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVE 247 (291)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHT---SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHH
T ss_pred CCHHHhhhcccccCCCHHHHHHHHHcc---CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 12356788888776 7898 569999999999999999999999999999864311 2344555
Q ss_pred HHHcCCC
Q 022271 181 KLVEMDK 187 (300)
Q Consensus 181 ~i~~a~~ 187 (300)
++...++
T Consensus 248 Av~~~~~ 254 (291)
T 3o07_A 248 ATTHFDN 254 (291)
T ss_dssp HHHTTTC
T ss_pred HHHhccC
Confidence 5555444
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.2e-06 Score=70.94 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=94.8
Q ss_pred cHHHHHHHHhCCceEEe--cC-CCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC---C
Q 022271 24 GPELVAAVANAGGLGLL--RA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E 97 (300)
Q Consensus 24 ~~~la~avs~aGglG~i--~~-~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G---~ 97 (300)
..+++.++.++|.=.+. .. ..........+.++++++.++.|+-++.... ..+.++.+++.|++.|.+... .
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~--~~~~~~~~~~~Gad~V~i~~~~~~~ 112 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVR--SLEDATTLFRAGADKVSVNTAAVRN 112 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCC--SHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHHcCCCEEEEChHHhhC
Confidence 35788888887743221 11 0112333445678888887888987766543 344556666777777765321 0
Q ss_pred C------------------------------------------cHHHHHHHHHCCCeEeec-----c-----ChhchHHH
Q 022271 98 Y------------------------------------------SEELVLEAHSAGVKVVPQ-----D-----GLISLLPM 125 (300)
Q Consensus 98 ~------------------------------------------~~~~v~~~~~~G~~v~~~-----~-----~~~~ll~~ 125 (300)
| +.+.++.+.+.|+..+.. . ..+.++.+
T Consensus 113 ~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~ 192 (253)
T 1h5y_A 113 PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRR 192 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHH
Confidence 0 122333333333332211 0 12456777
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
+++.+ ++||++.|||.+.+++.+++.+|||+|++||.|+.... ..+..++.+.
T Consensus 193 l~~~~---~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~--~~~~~~~~l~ 245 (253)
T 1h5y_A 193 VADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVL--SIAQVKRYLK 245 (253)
T ss_dssp HHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSS--CHHHHHHHHH
T ss_pred HHHhc---CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 77775 79999999999999999999999999999999987542 2344555543
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-07 Score=78.99 Aligned_cols=150 Identities=17% Similarity=0.282 Sum_probs=96.6
Q ss_pred CCccceecCCCCCCCCcH-HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh-h-cCCcEEeeeecCC-----C-c--
Q 022271 8 GFEYGIVQAPLGPDISGP-ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-L-TERPFGVGVVLAF-----P-H-- 76 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~-~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~-~-~~~P~gvnl~~~~-----~-~-- 76 (300)
-+++|++++||. +..++ +++.+..+.|.-+++.. +. .++.+++ . .+.|+.+++.... + .
T Consensus 31 ~id~~~~l~p~~-~~~~~~~~~~~~~~~g~~~i~~~-----~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~ 100 (273)
T 2qjg_A 31 PMDHGVSNGPIK-GLIDIRKTVNDVAEGGANAVLLH-----KG----IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKV 100 (273)
T ss_dssp ECCHHHHHCSCT-TSSSHHHHHHHHHHHTCSEEEEC-----HH----HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCE
T ss_pred EcccccccCCCc-chhhHHHHHHHHHhcCCCEEEeC-----HH----HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccch
Confidence 378999999998 78776 68888888887666532 21 2222222 1 2457777765432 1 1
Q ss_pred -HHHHHHHHHcCCcEE--EEcCCCCcH--------HHHHHHHHCCCeEee------------------------------
Q 022271 77 -NENIKAILSEKVAVL--QVSWGEYSE--------ELVLEAHSAGVKVVP------------------------------ 115 (300)
Q Consensus 77 -~~~~~~~~e~g~~~i--~~~~G~~~~--------~~v~~~~~~G~~v~~------------------------------ 115 (300)
.+.++.+++.|++.| .+..|.++. ++++.+++.|+.++.
T Consensus 101 ~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Ga 180 (273)
T 2qjg_A 101 IVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGA 180 (273)
T ss_dssp ECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCC
Confidence 345667777777777 444444321 234444555655442
Q ss_pred ----c--cChhchHHHHHHhhCCCCCcEEEccCCCC--hHH----HHHHHHCCCcEEEeccccccCc
Q 022271 116 ----Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVD--ARG----YVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 116 ----~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~--g~~----v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. ...+.++.++++.+ ++||++.|||.+ .++ +.+++..||+||.+||.++..+
T Consensus 181 d~i~~~~~~~~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~ 244 (273)
T 2qjg_A 181 DIVKTSYTGDIDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHD 244 (273)
T ss_dssp SEEEECCCSSHHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSS
T ss_pred CEEEECCCCCHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCC
Confidence 1 12345666777665 799999999995 667 6667789999999999998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=6.9e-06 Score=72.26 Aligned_cols=142 Identities=22% Similarity=0.292 Sum_probs=89.7
Q ss_pred cHHHHHHHHhCCceE--EecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC---C
Q 022271 24 GPELVAAVANAGGLG--LLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E 97 (300)
Q Consensus 24 ~~~la~avs~aGglG--~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G---~ 97 (300)
..+++.+..++|.=. +.... .........+.++++++.++.|+-++-... +.+.++.+++.|++.|.+... .
T Consensus 33 ~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~--~~~~~~~~~~~Gad~V~lg~~~l~~ 110 (252)
T 1ka9_F 33 PVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVR--SLEDARKLLLSGADKVSVNSAAVRR 110 (252)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCC--SHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcC--CHHHHHHHHHcCCCEEEEChHHHhC
Confidence 347888877777422 22110 112333445678888887888887643332 345555566666665544210 0
Q ss_pred ------------------------------------------CcHHHHHHHHHCCCeEe--ec---cC-----hhchHHH
Q 022271 98 ------------------------------------------YSEELVLEAHSAGVKVV--PQ---DG-----LISLLPM 125 (300)
Q Consensus 98 ------------------------------------------~~~~~v~~~~~~G~~v~--~~---~~-----~~~ll~~ 125 (300)
.+.+.++++.+.|+..+ +. .+ .+.++.+
T Consensus 111 p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~ 190 (252)
T 1ka9_F 111 PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRM 190 (252)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHH
Confidence 01233444444444321 11 11 3668888
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++.+ ++|||+.|||.+.+++.+++..|||||++|++|+..+
T Consensus 191 l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 191 VAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 88887 7999999999999999999999999999999998764
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=73.76 Aligned_cols=112 Identities=14% Similarity=0.220 Sum_probs=85.0
Q ss_pred HHHHHHhh--cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSL--TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~--~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~------------- 116 (300)
.++++|+. ++.|+-+.|+...|. .+++.+.+.|++.|.++.-. -....++.+++.|.++...
T Consensus 53 ~v~~ir~~~~~~~~~dvhLmv~~p~-~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~ 131 (228)
T 3ovp_A 53 VVESLRKQLGQDPFFDMHMMVSKPE-QWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPW 131 (228)
T ss_dssp HHHHHHHHHCSSSCEEEEEECSCGG-GGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGG
T ss_pred HHHHHHHhhCCCCcEEEEEEeCCHH-HHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHH
Confidence 56777777 588999999987664 57888999999999998521 2457888899999887643
Q ss_pred -------------c---------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 -------------D---------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 -------------~---------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. ..+.-+.++++.. .+.|+.++||| +.+.+..+..+|||.+++||.+..+
T Consensus 132 l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a 203 (228)
T 3ovp_A 132 ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIMRS 203 (228)
T ss_dssp GGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTC
T ss_pred hccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 0 0222344555543 26899999999 5899999999999999999987754
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=73.57 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--c-HHHHHHHHHCCCeEeec-------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--S-EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~-~~~v~~~~~~G~~v~~~------------- 116 (300)
+.++++|+.++.|+.+.|+.+.+ .+.++.+.+.|++.|.++.+.. + .+.++.+++.|..++..
T Consensus 54 ~~~~~lr~~~~~~~~v~lmv~d~-~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~ 132 (228)
T 1h1y_A 54 PVIQSLRKHTKAYLDCHLMVTNP-SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPL 132 (228)
T ss_dssp HHHHHHHTTCCSEEEEEEESSCG-GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecCH-HHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHH
Confidence 56777888887899999999765 4468888999999999986532 3 55678888888766532
Q ss_pred -c---C---------------------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -D---G---------------------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -~---~---------------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
. + .+..+.++++... ++||+++|||.. +.+..++..|||++.+||.++..+
T Consensus 133 ~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~--~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~~~ 208 (228)
T 1h1y_A 133 VEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP--SLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGAA 208 (228)
T ss_dssp HHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTSS
T ss_pred HhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC--CCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCC
Confidence 0 1 1122334444331 689999999987 789899999999999999998753
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-06 Score=76.94 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccCh
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGL 119 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~ 119 (300)
..+.+.++.+|+..+.|++|.+..... . .+.++.+.+.|++.|.++.|... ...... ...-.
T Consensus 195 r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~--------~~~~~~-~~~~~ 265 (338)
T 1z41_A 195 RFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV--------HADINV-FPGYQ 265 (338)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSS--------CCCCCC-CTTTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccc--------cCCCCC-Cccch
Confidence 346777888888779999999877421 1 35677778899999999865421 000000 00113
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
+.++.++++.+ ++||++.|||.|++++.+++..| ||+|++|+.|+..+
T Consensus 266 ~~~~~~ir~~~---~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nP 314 (338)
T 1z41_A 266 VSFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDP 314 (338)
T ss_dssp HHHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCT
T ss_pred HHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCc
Confidence 56778888888 79999999999999999999999 99999999999864
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=73.40 Aligned_cols=145 Identities=12% Similarity=0.172 Sum_probs=95.5
Q ss_pred CcHHHHHHHHhCCc--eEEec-CCCC-CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC-
Q 022271 23 SGPELVAAVANAGG--LGLLR-APDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE- 97 (300)
Q Consensus 23 s~~~la~avs~aGg--lG~i~-~~~~-~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~- 97 (300)
+..+.+..+.++|. +++.- .+.+ .....-.+.++++|+.++.|+.+.++.+.+. +.++.+.+.|++.|.++.+.
T Consensus 17 ~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~-~~i~~~~~~gad~v~vh~~~~ 95 (220)
T 2fli_A 17 NFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPE-RYVEAFAQAGADIMTIHTEST 95 (220)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGG-GGHHHHHHHTCSEEEEEGGGC
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHH-HHHHHHHHcCCCEEEEccCcc
Confidence 44566667777774 33321 1111 1101112567778887888999999887653 35699999999999997532
Q ss_pred -CcHHHHHHHHHCCCeEeec-----------------------------cC------hhchHHHHHHhhC--CCCCcEEE
Q 022271 98 -YSEELVLEAHSAGVKVVPQ-----------------------------DG------LISLLPMVVDLIG--DRDIPIIA 139 (300)
Q Consensus 98 -~~~~~v~~~~~~G~~v~~~-----------------------------~~------~~~ll~~v~~~~~--~~~iPVia 139 (300)
.+...++.+++.|.+++.. .+ .+..+.++++... ..++||++
T Consensus 96 ~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v 175 (220)
T 2fli_A 96 RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV 175 (220)
T ss_dssp SCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 2456677788778765532 00 1122444544431 11589999
Q ss_pred ccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 140 AGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 140 aGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+|||. .+.+.+++.+|||+|.+||++...
T Consensus 176 ~GGI~-~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 176 DGGVD-NKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp ESSCC-TTTHHHHHHHTCCEEEESHHHHTS
T ss_pred ECcCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 99999 789999999999999999999876
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-05 Score=69.40 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=103.2
Q ss_pred CccccccCCccceecCCCCCCCCcHHHHHHHHhCCc-eEEecCCCCCCHHHHHHHHHHHHhhcCCcEEe-----eeecCC
Q 022271 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGG-LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGV-----GVVLAF 74 (300)
Q Consensus 1 ~~~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGg-lG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gv-----nl~~~~ 74 (300)
|++.+.-.-+|=....|=- -.+.+++.++.++|. +=.++.....+.+.+.+.++++|+ ++.|+.+ |.+...
T Consensus 1 ~~~~~~~~~~~i~~gDP~~--~~t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G 77 (240)
T 1viz_A 1 MSLYDVTEWKHVFKLDPNK--DLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPG 77 (240)
T ss_dssp -CCSCGGGCCEEEEECTTS--CCCHHHHHHHHTSCCSEEEECC----CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSC
T ss_pred CCccccCcceEEEeeCCCc--cccHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCC
Confidence 5554444455655666742 356777888888885 111221223688989999999999 7888754 333211
Q ss_pred ---------Cc---HH-----HHHHHHHcC-----CcEEE----Ec-C---------CC--CcHHHHHHHHHCC----Ce
Q 022271 75 ---------PH---NE-----NIKAILSEK-----VAVLQ----VS-W---------GE--YSEELVLEAHSAG----VK 112 (300)
Q Consensus 75 ---------~~---~~-----~~~~~~e~g-----~~~i~----~~-~---------G~--~~~~~v~~~~~~G----~~ 112 (300)
++ .+ +.+.+.+++ .+.|. +- - +. ..++.+....+.| ..
T Consensus 78 ~dg~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~ 157 (240)
T 1viz_A 78 FDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP 157 (240)
T ss_dssp CSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS
T ss_pred CCEEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCC
Confidence 11 22 256777777 77665 31 1 10 0123444444333 23
Q ss_pred Eeec-----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 113 VVPQ-----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 113 v~~~-----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++.. .+...++.++++.+. ++||++.|||+|++++.+++. |||+|++||+++-..|
T Consensus 158 ~VYl~s~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~ 218 (240)
T 1viz_A 158 IFYLEYSGVLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFD 218 (240)
T ss_dssp EEEEECTTSCCCHHHHHHHHHTCS--SSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHH
T ss_pred EEEEeCCCccChHHHHHHHHHhcC--CCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHH
Confidence 3322 234678888887652 699999999999999999999 9999999999997644
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-06 Score=72.86 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC---c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP---H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++++++++..+ |+.++++...+ . .+..+.+.+.|+++|-++.|.. .| -.++
T Consensus 100 ~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~~----------~g------ga~~ 162 (225)
T 1mzh_A 100 KYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----------PR------GTTL 162 (225)
T ss_dssp CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----------SS------CCCH
T ss_pred ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCCC----------CC------CCCH
Confidence 56777788999998877 88888854322 1 3456788889999997776531 11 1256
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
..+.++++.+.. ++||+++|||.|++++.+++.+|||.|.+++
T Consensus 163 ~~i~~v~~~v~~-~ipVia~GGI~t~~da~~~l~aGA~~iG~s~ 205 (225)
T 1mzh_A 163 EEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIGTSS 205 (225)
T ss_dssp HHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred HHHHHHHHHhCC-CCcEEEECCCCCHHHHHHHHHhCchHHHHcc
Confidence 677778877632 6999999999999999999999999665543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-06 Score=75.38 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=41.7
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+.++.++++.+ ++|||+.|||.+++++.+++..|||||++||+|+..+
T Consensus 189 ~~~i~~l~~~~---~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~ 236 (266)
T 2w6r_A 189 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 236 (266)
T ss_dssp HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCC
Confidence 67788888776 8999999999999999999999999999999998764
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.8e-06 Score=72.63 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec-------------
Q 022271 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~------------- 116 (300)
..++.+|+.+ ++|+-+.|+...| ..+++.+.+.|++.|+++.-. -+...++.+++.|+++...
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv~~p-~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~ 153 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMVKPV-DALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYV 153 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEECSSC-HHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTT
T ss_pred HHHHHHHHhCCCCeEEEEEeeCCH-HHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 3677778888 8999999998776 457899999999999997522 2467889999999887643
Q ss_pred ----------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ----------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ----------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++... +.+++|.+.|||. .+.+..+..+|||.+++||.+..+
T Consensus 154 l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a 229 (246)
T 3inp_A 154 ESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNS 229 (246)
T ss_dssp GGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTS
T ss_pred HhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCC
Confidence 012333445554432 1358999999998 678999999999999999987655
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-06 Score=73.88 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=87.8
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeee-------cCC-----C
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVV-------LAF-----P 75 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~-------~~~-----~ 75 (300)
...|++. ++ |+.+.+-+..+-++|.=+++-.. .+.+|+.+.+. ++..+ ...+++..- .+. .
T Consensus 72 ~~ipvi~--~G-gi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~-~~~g~--~i~~~~d~~~~~v~~~g~~~~~~~~ 145 (241)
T 1qo2_A 72 FAEHIQI--GG-GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSL-REIDV--EPVFSLDTRGGRVAFKGWLAEEEID 145 (241)
T ss_dssp GGGGEEE--ES-SCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHH-HTTTC--EEEEEEEEETTEECCTTCSSCSCCC
T ss_pred cCCcEEE--EC-CCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHH-HHcCC--cEEEEEEecCCEEEECCceecCCCC
Confidence 3568885 34 67887777777777866654221 11234333333 22210 112334331 011 2
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
..+.++.+.+.|+..|.++ +. .++ ....| ..+.++.++++.+ ++|||+.|||.+.+++.+++.+
T Consensus 146 ~~e~~~~~~~~G~~~i~~t-~~-~~~----g~~~g-------~~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~ 209 (241)
T 1qo2_A 146 PVSLLKRLKEYGLEEIVHT-EI-EKD----GTLQE-------HDFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKV 209 (241)
T ss_dssp HHHHHHHHHTTTCCEEEEE-ET-THH----HHTCC-------CCHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEE-ee-ccc----ccCCc-------CCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhc
Confidence 2455677778888877664 22 111 11122 2478889999888 7999999999999999999998
Q ss_pred -----C-CcEEEeccccccCc
Q 022271 156 -----G-AQGICLGTRFVASE 170 (300)
Q Consensus 156 -----G-AdgV~~GT~fl~t~ 170 (300)
| ||||++||+|+..+
T Consensus 210 ~~~~~G~adgv~vgsal~~~~ 230 (241)
T 1qo2_A 210 HTETNGLLKGVIVGRAFLEGI 230 (241)
T ss_dssp HHHTTTSEEEEEECHHHHTTS
T ss_pred ccccCCeEeEEEeeHHHHcCC
Confidence 9 99999999998763
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=74.06 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCC------Cc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAF------PH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~------~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
.+.+.++.+|+.. +.|++|.+-... .. .+.++.+.+.|++.|.++.|..... ..... ...-
T Consensus 204 ~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~-------~~~~~-~~~~ 275 (349)
T 3hgj_A 204 FPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLR-------VRIPL-APGF 275 (349)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSS-------SCCCC-CTTT
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcc-------cccCC-Cccc
Confidence 4567788888876 689999988642 11 3456777889999999885432110 00000 0011
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.+.++.++++.+ ++||++.|||.|++++.+++..| ||.|++|+.|+..++
T Consensus 276 ~~~~~~~ir~~~---~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPd 326 (349)
T 3hgj_A 276 QVPFADAVRKRV---GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPY 326 (349)
T ss_dssp THHHHHHHHHHH---CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred cHHHHHHHHHHc---CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCch
Confidence 456778888887 79999999999999999999999 999999999998643
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=70.51 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC---CcHHHHHHHHHCCCeEeec-------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~---~~~~~v~~~~~~G~~v~~~------------- 116 (300)
..++.+|+.+++|+-+-|+...| ..+++.+.+.|++.|+++.-. .+...++.+++.|.++...
T Consensus 47 ~~v~~lr~~~~~~~dvhLmv~dp-~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~ 125 (231)
T 3ctl_A 47 FFVSQVKKLATKPLDCHLMVTRP-QDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYY 125 (231)
T ss_dssp HHHHHHHTTCCSCEEEEEESSCG-GGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTT
T ss_pred HHHHHHHhccCCcEEEEEEecCH-HHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHH
Confidence 47888899899999999999875 446799999999999988644 2467888899999887643
Q ss_pred ----------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEec-cccccC
Q 022271 117 ----------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLG-TRFVAS 169 (300)
Q Consensus 117 ----------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G-T~fl~t 169 (300)
...+.-+.++++..+ +.+++|.+.|||. .+.+..+...|||.+++| |.+...
T Consensus 126 l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 126 IHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp GGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred HhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCC
Confidence 012334455555542 1268999999997 568889999999999999 666543
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.1e-06 Score=73.94 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=39.4
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++... .++||++.||| +.+++..++..||+||.+|+.|+.++
T Consensus 178 l~~l~~~~~~~~-~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~ 226 (243)
T 3o63_A 178 LGLVRVAAELGG-DDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSAD 226 (243)
T ss_dssp HHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCS
T ss_pred HHHHHHHHHhcc-CCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 345666655410 27999999999 99999999999999999999999764
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-05 Score=70.86 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=50.3
Q ss_pred hhchHHHHHHhhCCCCCcE--EEccCCCChHHHHHHHHCCCcEEEeccccccCccc-CCCHHHHHHHHcCCC
Q 022271 119 LISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEES-YAHPEYKRKLVEMDK 187 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPV--iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es-~~~~~~k~~i~~a~~ 187 (300)
.+.+++++.+.. ++|| |+.|||.+++++..++.+|||||++|+.++.+..- .....+++++...++
T Consensus 228 ~lell~~i~~~~---~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~ 296 (330)
T 2yzr_A 228 LYEVLLEVKKLG---RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDK 296 (330)
T ss_dssp HHHHHHHHHHHT---SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHhC---CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 347888888766 7898 69999999999999999999999999999975321 123445555554444
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=69.52 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.++| +..+-. .+.+++.+ +.|+++++.. +.-+|.+-+ .+.++++.+++.|+++|... +. ..+++
T Consensus 49 ~~~a~al~~gG-i~~iEv-t~~t~~a~-e~I~~l~~~~~~~~iGaGTV---lt~~~a~~Ai~AGA~fIvsP-~~-~~~vi 120 (232)
T 4e38_A 49 IPLGKVLAENG-LPAAEI-TFRSDAAV-EAIRLLRQAQPEMLIGAGTI---LNGEQALAAKEAGATFVVSP-GF-NPNTV 120 (232)
T ss_dssp HHHHHHHHHTT-CCEEEE-ETTSTTHH-HHHHHHHHHCTTCEEEEECC---CSHHHHHHHHHHTCSEEECS-SC-CHHHH
T ss_pred HHHHHHHHHCC-CCEEEE-eCCCCCHH-HHHHHHHHhCCCCEEeECCc---CCHHHHHHHHHcCCCEEEeC-CC-CHHHH
Confidence 46777766654 555533 13455543 5677777653 344666544 35889999999999999765 33 56788
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .+ -..++..++..+ .++|+++.|||. .+.+..+|++||.
T Consensus 121 ~~~~~~gi~~ipGv~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lkal~~p~--p~ip~~ptGGI~-~~n~~~~l~aGa~ 197 (232)
T 4e38_A 121 RACQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPY--GDIRLMPTGGIT-PSNIDNYLAIPQV 197 (232)
T ss_dssp HHHHHHTCEEECEECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHTSTTB
T ss_pred HHHHHcCCCEEcCCCCHHHHHHHHHcCCCEEEECcCccccCHHHHHHHHHHh--cCCCeeeEcCCC-HHHHHHHHHCCCe
Confidence 8888888888764 11 134555555444 279999999995 8999999999999
Q ss_pred EEEecccccc
Q 022271 159 GICLGTRFVA 168 (300)
Q Consensus 159 gV~~GT~fl~ 168 (300)
++..||.+.-
T Consensus 198 ~~vgGs~l~~ 207 (232)
T 4e38_A 198 LACGGTWMVD 207 (232)
T ss_dssp CCEEECGGGC
T ss_pred EEEECchhcC
Confidence 9988887654
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.1e-05 Score=66.33 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhcCCcEEeeeec---CCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----c----
Q 022271 49 DYLRDLIRKTRSLTERPFGVGVVL---AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----D---- 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~~P~gvnl~~---~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~---- 117 (300)
..|.+.++++|+. ++|.-|+.=. -.+++..++.+...+++.|..+ ....+..+++.|...++. +
T Consensus 43 ~~L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIsT----k~~~i~~Akk~GL~tIqR~FliDs~al 117 (188)
T 1vkf_A 43 LNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI----KPKNYVVAKKNGIPAVLRFFALDSKAV 117 (188)
T ss_dssp TTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES----CHHHHHHHHHTTCCEEEEEECCSHHHH
T ss_pred HHHHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEEEcC----cHHHHHHHHHcCCEEeeEEEEEEeHHH
Confidence 3588889999887 8887775422 2346777888866799988775 245788889999888764 0
Q ss_pred -----------C----hh-ch-HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 -----------G----LI-SL-LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 -----------~----~~-~l-l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+ .+ .. .|++.+.+ .++|||++|+|.|.+++.+ +..||++|..|++=|+..
T Consensus 118 ~~~~~~I~~~kPD~iEiLPg~v~p~~I~~v--~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~~ 184 (188)
T 1vkf_A 118 ERGIEQIETLGVDVVEVLPGAVAPKVARKI--PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWKM 184 (188)
T ss_dssp HHHHHHHHHHTCSEEEEESGGGHHHHHTTS--TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHTC
T ss_pred hhhhhhccccCCCeEeecCCCchHHHHHHh--cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhCC
Confidence 0 11 13 56777666 4899999999999999999 999999999999887754
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=68.94 Aligned_cols=154 Identities=15% Similarity=0.069 Sum_probs=97.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC-CCCHHHHHHHHHHHHhhcCCcEEeeeecCC--------------
Q 022271 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAF-------------- 74 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-------------- 74 (300)
+|=....|=- ..+.+...+++++|.=.++-.+. ..+.+.+.+.++++|+ ++.|+-+ +..+.
T Consensus 8 ~h~~~iDPdk--~~~~~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvl-fp~~~~~v~~gaD~~l~ps 83 (228)
T 3vzx_A 8 KHVFKLDPNK--DLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVL-EVSAIEAIVPGFDLYFIPS 83 (228)
T ss_dssp CEEEEECTTS--CCCTTHHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEE-ECSCGGGCCSCCSEEEEEE
T ss_pred eEEEeECCCC--CCCHHHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEE-eCCCHHHccccCCEEEEee
Confidence 3444455632 23335566678888655443222 2578999999999998 8888743 11110
Q ss_pred ----Cc-----HHHHHHHHHcCC-----cEEE-----EcCCCC------------cHHHHHHHH---HCCCeEeec----
Q 022271 75 ----PH-----NENIKAILSEKV-----AVLQ-----VSWGEY------------SEELVLEAH---SAGVKVVPQ---- 116 (300)
Q Consensus 75 ----~~-----~~~~~~~~e~g~-----~~i~-----~~~G~~------------~~~~v~~~~---~~G~~v~~~---- 116 (300)
.+ ..+.+.+.+.|. .+|. ++-++. ++++..... -.|.+++..
T Consensus 84 lln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~sG 163 (228)
T 3vzx_A 84 VLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSG 163 (228)
T ss_dssp ETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTT
T ss_pred ecCCCCcchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 01 345577777775 6654 222221 122222222 234555433
Q ss_pred -cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 -DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 -~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+...++.++++.++ ++||++.|||+|++++.+++ .|||+|++||++.-.+
T Consensus 164 ~~~~~~~i~~i~~~~~--~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p 215 (228)
T 3vzx_A 164 VLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDF 215 (228)
T ss_dssp SCCCHHHHHHHHHHCS--SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCH
T ss_pred CcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCH
Confidence 235778888888762 59999999999999999988 7999999999998753
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-05 Score=68.89 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=95.6
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCceE-EecCCCCCCHHHHHHHHHHHHhhcCCcEEe-----eeecCC---------Cc--
Q 022271 14 VQAPLGPDISGPELVAAVANAGGLG-LLRAPDWEAPDYLRDLIRKTRSLTERPFGV-----GVVLAF---------PH-- 76 (300)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG-~i~~~~~~~~~~l~~~i~~~r~~~~~P~gv-----nl~~~~---------~~-- 76 (300)
...|=- -.+.+.+.++.++|.=- .++..+..+.+.+.+.++++|+ ++.|+.+ |.+... |+
T Consensus 14 ~gDP~~--~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i~~gvDg~iipdLp~ee 90 (234)
T 2f6u_A 14 KLDPDR--TNTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNVVYDVDYLFVPTVLNSA 90 (234)
T ss_dssp EECTTS--CCCHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCCCCCSSEEEEEEETTBS
T ss_pred eeCCCc--cccHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchhhcCCCEEEEcccCCCC
Confidence 344532 35567788888888511 1221234689999999999998 7888643 222110 11
Q ss_pred ------HHHHHHH-------HHcC-----CcEEEE----c----------CCCC--cHHHHHHHHHCCC-----eEeec-
Q 022271 77 ------NENIKAI-------LSEK-----VAVLQV----S----------WGEY--SEELVLEAHSAGV-----KVVPQ- 116 (300)
Q Consensus 77 ------~~~~~~~-------~e~g-----~~~i~~----~----------~G~~--~~~~v~~~~~~G~-----~v~~~- 116 (300)
..+.+.+ .++| .+.|.. - -|.| +++.++...+.|. .++..
T Consensus 91 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vyl~ 170 (234)
T 2f6u_A 91 DGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIE 170 (234)
T ss_dssp BGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEEEe
Confidence 1223444 5567 777763 1 1111 2244554444332 33322
Q ss_pred ----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
.+...++.++++.+. ++||++.|||+|++++.+++. |||+|++||+++-..
T Consensus 171 ~~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~~ 225 (234)
T 2f6u_A 171 YSGTYGNPELVAEVKKVLD--KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKG 225 (234)
T ss_dssp CTTSCCCHHHHHHHHHHCS--SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHHC
T ss_pred CCCCcchHHHHHHHHHhCC--CCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhCH
Confidence 235678888888752 699999999999999999999 999999999998654
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7.8e-05 Score=65.18 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=96.9
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCceEEe-cCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCC-------------
Q 022271 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLL-RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF------------- 74 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i-~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~------------- 74 (300)
-+|=....|=- ..+.+...+++++|.=.++ +.....+.+.+.+.++++|+ ++.|+.+ +..+.
T Consensus 12 w~h~~~~DPdk--~~~~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil-~p~~~~~~~~gaD~il~p 87 (235)
T 3w01_A 12 WRHIFKLDPAK--HISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVL-EISNIESVMPGFDFYFVP 87 (235)
T ss_dssp CCEEEEECTTS--CCCHHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEE-ECCCSTTCCTTCSEEEEE
T ss_pred ceEEEeECCCC--cCCHHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEE-ecCCHHHhhcCCCEEEEc
Confidence 34545566742 3344555567888754443 22223589999999999999 8888744 21110
Q ss_pred --C--------cHHHHHHHHHcCC-----cEEEE-----cCCCC------------cHHHHHHHH----HCCCeEeec--
Q 022271 75 --P--------HNENIKAILSEKV-----AVLQV-----SWGEY------------SEELVLEAH----SAGVKVVPQ-- 116 (300)
Q Consensus 75 --~--------~~~~~~~~~e~g~-----~~i~~-----~~G~~------------~~~~v~~~~----~~G~~v~~~-- 116 (300)
+ ...+++.+.+.|. ++|.. +-++. ++.+..... -.|...+..
T Consensus 88 slln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~vY~e~ 167 (235)
T 3w01_A 88 TVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEY 167 (235)
T ss_dssp EETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred cccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 0 1345677888887 77652 22211 122222211 124344332
Q ss_pred ---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+...++.++++.+. ++||+..|||++++++.++.. |||+|++||+|.-.
T Consensus 168 sG~~g~~~~v~~ir~~~~--~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~ 220 (235)
T 3w01_A 168 SGIYGDVSKVQAVSEHLT--ETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKD 220 (235)
T ss_dssp TTSCCCHHHHHHHHTTCS--SSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred CCCcCCHHHHHHHHHhcC--CCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence 335667777777642 689999999999999998887 99999999999974
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=73.13 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC-------c-----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP-------H-----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~-------~-----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.++.+|+..+ .|++|.+..... . .+.++.+.+.|++.|.++.|.. |
T Consensus 205 f~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-----------~------ 267 (362)
T 4ab4_A 205 LLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREA-----------D------ 267 (362)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC-----------T------
T ss_pred HHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC-----------C------
Confidence 46677888888753 399999887531 1 2346777788999999886531 1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
. .++.++++.+ ++|||++||| |++++.+++..| ||+|.+|+.|++.++
T Consensus 268 -~--~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPd 316 (362)
T 4ab4_A 268 -D--SIGPLIKEAF---GGPYIVNERF-DKASANAALASGKADAVAFGVPFIANPD 316 (362)
T ss_dssp -T--CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred -H--HHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcH
Confidence 0 4677888888 7999999999 999999999998 999999999998753
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=75.01 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCC----------cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFP----------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~----------~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
-+.+.++.+|+.. +.|++|.+-.... ..+.++.+.+.|++.|.++.|..... ..... ...
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~-------~~~~~-~~~ 281 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPD-------TNIPW-GPA 281 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSC-------CCCCC-CTT
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccc-------cccCC-Ccc
Confidence 4567788888876 5789998876321 13456777889999999886542100 00000 001
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
-...++.++++.+ ++|||+.|||.|++++.+++..| ||.|++|+.|+..+
T Consensus 282 ~~~~~~~~ir~~~---~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanP 332 (363)
T 3l5l_A 282 FMGPIAERVRREA---KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADP 332 (363)
T ss_dssp TTHHHHHHHHHHH---TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCT
T ss_pred hhHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCc
Confidence 1356777888888 79999999999999999999999 99999999999864
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=73.25 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC---------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP---------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~---------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.++.+|+..+ .|++|.+-.... . .+.++.+.+.|++.|.++.|.. |
T Consensus 213 f~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-----------~------ 275 (361)
T 3gka_A 213 LLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFG-----------G------ 275 (361)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS-----------T------
T ss_pred HHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC-----------C------
Confidence 46677888888753 299999887531 1 2356777788999999886531 1
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+ .++.++++.+ ++|||+.||| |++++.+++..| ||+|.+|+.|++.++
T Consensus 276 -~--~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPd 324 (361)
T 3gka_A 276 -D--AIGQQLKAAF---GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANPD 324 (361)
T ss_dssp -T--CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred -H--HHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcH
Confidence 0 4677888888 7999999999 999999999998 999999999998753
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0001 Score=65.95 Aligned_cols=141 Identities=14% Similarity=0.052 Sum_probs=92.0
Q ss_pred HHHHHHhCCceEEecCCCCCC--HHHHHHHHHHHHhhcCCcEEeeee---cCC----C--------------c-----HH
Q 022271 27 LVAAVANAGGLGLLRAPDWEA--PDYLRDLIRKTRSLTERPFGVGVV---LAF----P--------------H-----NE 78 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~--~~~l~~~i~~~r~~~~~P~gvnl~---~~~----~--------------~-----~~ 78 (300)
++.+++.+|.=.++-.....+ .+.+.+.++++|+.++.|+-+++. .+. + + ..
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i~~~aDa~l~psvlNs~n~~~i~g~ 137 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRGADALLLPALLGSGDDYFVWKS 137 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCCCTTCSEEEEEEETTBSSHHHHTHH
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCccccccCCCEEEEEEEecCCCcccccCc
Confidence 678888888633332122257 788999999999988999877455 211 0 1 12
Q ss_pred --HHHH---H----HHcCCcEEEE-----cCC-------------CCc----HHHHHHHHHCCCeEeecc-----Chhch
Q 022271 79 --NIKA---I----LSEKVAVLQV-----SWG-------------EYS----EELVLEAHSAGVKVVPQD-----GLISL 122 (300)
Q Consensus 79 --~~~~---~----~e~g~~~i~~-----~~G-------------~~~----~~~v~~~~~~G~~v~~~~-----~~~~l 122 (300)
+... + .+.+ .+|.. .-| .|. ..+.......|.+++..+ ....+
T Consensus 138 ~~~~~aa~~v~~~~~~~g-e~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~gad~G~~lV~LD~~~~~v~~e~ 216 (286)
T 3vk5_A 138 FLETLAAFPGRIPREEWP-ELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNEHVPPEV 216 (286)
T ss_dssp HHHHHHHCSTTSCGGGCC-EEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHHHHTTCSEEEEECSSSCCCHHH
T ss_pred HHHHHHhHHHHHHHHHhC-CcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcCCHHH
Confidence 2211 2 3444 55432 222 221 123333455677776542 24567
Q ss_pred HHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 123 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 123 l~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.++++.+. .++||++.|||+|.+++.+++.+|||+|++||+++-.
T Consensus 217 V~~I~~~~~-~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d 262 (286)
T 3vk5_A 217 VRHFRKGLG-PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262 (286)
T ss_dssp HHHHHHHSC-TTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred HHHHHHhcC-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 778877752 1599999999999999999999999999999999755
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=72.05 Aligned_cols=110 Identities=21% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
.-+.+.++.+|+.. +.|++|.+-.... . .+.++.+.+. ++.|.++.|.... ....... .
T Consensus 194 rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~--------~~~~~~~-~ 263 (343)
T 3kru_A 194 RFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLN--------VDINLYP-G 263 (343)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSC--------CCCCCCT-T
T ss_pred HHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEe--------eeecccC-c
Confidence 34677888899876 5799999887421 1 3456666677 9999987554211 0000000 1
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
..+.++.++++.+ ++|||+.|||.|++++.+++..| ||+|++|+.|++.++
T Consensus 264 ~~~~~~~~ir~~~---~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPd 315 (343)
T 3kru_A 264 YQVKYAETIKKRC---NIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPY 315 (343)
T ss_dssp TTHHHHHHHHHHH---TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred eeehHHHHHHHhc---CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCe
Confidence 1456778888888 79999999999999999999998 999999999998753
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=72.63 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhcCC-cEEeeeecCCC--------c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTER-PFGVGVVLAFP--------H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~-P~gvnl~~~~~--------~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.++.+|+..+. |++|.+..... . .+.++.+.+.|++.|.++.+.... ..+
T Consensus 213 ~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~~~------ 279 (365)
T 2gou_A 213 FLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDD-------APD------ 279 (365)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTB-------CCC------
T ss_pred HHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCC-------CCC------
Confidence 456678888887532 99998876421 1 244777888999999998653210 001
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
. ...++.++++.+ ++|||+.||| +++++.++|..| ||+|++|+.|+..+
T Consensus 280 ~-~~~~~~~i~~~~---~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P 329 (365)
T 2gou_A 280 T-PVSFKRALREAY---QGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIANP 329 (365)
T ss_dssp C-CHHHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHHCT
T ss_pred c-cHHHHHHHHHHC---CCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHhCc
Confidence 1 235677888887 7999999999 999999999998 99999999999864
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=68.56 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCceEEecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC-----
Q 022271 25 PELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY----- 98 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~----- 98 (300)
.+.+.++..+| +..+..- .-.+.+++.+.++++.+ .++++++.+. .++.+.+.+++.|.+.....
T Consensus 16 ~~~~~~a~~~G-v~~v~lr~k~~~~~~~~~~i~~l~~----~~~~~livnd----~~~~A~~~gadgvhl~~~~~~~~~~ 86 (210)
T 3ceu_A 16 DKIITALFEEG-LDILHLRKPETPAMYSERLLTLIPE----KYHRRIVTHE----HFYLKEEFNLMGIHLNARNPSEPHD 86 (210)
T ss_dssp HHHHHHHHHTT-CCEEEECCSSCCHHHHHHHHHHSCG----GGGGGEEESS----CTTHHHHTTCSEEECCSSSCSCCTT
T ss_pred HHHHHHHHHCC-CCEEEEccCCCCHHHHHHHHHHHHH----HhCCeEEEeC----CHHHHHHcCCCEEEECccccccccc
Confidence 35555555655 4444321 11356666666544432 3566666643 34677788888775532110
Q ss_pred -----------cHHHHHHHHHCCCeEeec------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH
Q 022271 99 -----------SEELVLEAHSAGVKVVPQ------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153 (300)
Q Consensus 99 -----------~~~~v~~~~~~G~~v~~~------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal 153 (300)
+.+ +.... .|...+.. . ..+..+.++.+.+. .++||++.|||. .+.+.+++
T Consensus 87 ~~~~ig~s~~t~~e-~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~-~~iPviaiGGI~-~~nv~~~~ 162 (210)
T 3ceu_A 87 YAGHVSCSCHSVEE-VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI-IDSKVMALGGIN-EDNLLEIK 162 (210)
T ss_dssp CCSEEEEEECSHHH-HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTC-SSTTEEEESSCC-TTTHHHHH
T ss_pred cCCEEEEecCCHHH-HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC-CCCCEEEECCCC-HHHHHHHH
Confidence 223 33333 56554421 0 12356667666520 179999999998 89999999
Q ss_pred HCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 154 SLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 154 ~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
..||+||.++|.+...++......|++.+.
T Consensus 163 ~~Ga~gVav~s~i~~~~d~~~~~~~~~~v~ 192 (210)
T 3ceu_A 163 DFGFGGAVVLGDLWNKFDACLDQNYLAVIE 192 (210)
T ss_dssp HTTCSEEEESHHHHTTCCTTTSSCCHHHHH
T ss_pred HhCCCEEEEhHHhHcCCCHHHHHHHHHHHH
Confidence 999999999999987665544445555443
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=9.6e-06 Score=70.13 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=40.6
Q ss_pred hchHHHHHHhhCCCC-CcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 120 ISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~-iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.++.++++.+ + +||+++|||. .+++.+++.+||+||.+||.+...
T Consensus 160 ~~~l~~~~~~~---~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 160 VSLIEAVRRQG---ISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQA 206 (227)
T ss_dssp THHHHHHHHTT---CCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHTS
T ss_pred HHHHHHHHHhC---CCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcC
Confidence 45677777765 5 9999999999 999999999999999999999876
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=67.62 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=78.9
Q ss_pred HHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEee------c------
Q 022271 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVP------Q------ 116 (300)
Q Consensus 53 ~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~------~------ 116 (300)
+.|+++|+. ++.|+.+.+-........++.+.+.|++++.++.-.+. .++++.+++.|+..+. +
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~ 127 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKA 127 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHH
Confidence 457778877 56677655544444456788999999999999853221 3456667778877642 1
Q ss_pred ------------c-------C---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------D-------G---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------~-------~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. + ....+..+++... .++|+++.||| +.+.+..++..|||+|.+||++...
T Consensus 128 ~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~-~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 128 WVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSA-LGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp HHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHcCccceeeeeccccccCCCcCCHHHHHHHHHHhC-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCC
Confidence 0 0 0112344444431 26999999999 6899999999999999999987754
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-05 Score=71.82 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC------------cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP------------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~------------~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.++.+|+..+ .|++|.+-.... ..+.++.+.+.|++.|.++.|... . . ..+
T Consensus 218 ~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~-~----~-~~~------ 285 (377)
T 2r14_A 218 FPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWI-G----G-DIT------ 285 (377)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------------C------
T ss_pred HHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccc-C----C-CCc------
Confidence 45667888888764 299999866421 134577778899999999865421 1 0 011
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
..+.++.++++.+ ++|||+.||| +++++.+++..| ||+|++|+.|+..+
T Consensus 286 -~~~~~~~~ik~~~---~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P 335 (377)
T 2r14_A 286 -YPEGFREQMRQRF---KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANP 335 (377)
T ss_dssp -CCTTHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred -chHHHHHHHHHHC---CCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhCc
Confidence 1356788888887 7999999999 799999999998 99999999999864
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-05 Score=69.58 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=91.9
Q ss_pred cHHHHHHHHhCCceEE--ecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--
Q 022271 24 GPELVAAVANAGGLGL--LRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-- 97 (300)
Q Consensus 24 ~~~la~avs~aGglG~--i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~-- 97 (300)
..++|.+..++|.-++ +....+. +++ .++.+|+.++.|+-.+-+. .+..+++.+.+.|++.|.+....
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~~----~l~~i~~~v~lPvl~kdfI--~d~~qi~~a~~~GAD~VlL~~~~l~ 140 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSLL----DLKRVREAVDLPLLRKDFV--VDPFMLEEARAFGASAALLIVALLG 140 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCHH----HHHHHHHHCCSCEEEESCC--CSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCHH----HHHHHHHhcCCCEEECCcC--CCHHHHHHHHHcCCCEEEECccchH
Confidence 4688888888775443 2111111 343 5667777788897665443 23556788999999999874221
Q ss_pred -CcHHHHHHHHHCCCeEeec----------------------------cChhchHHHHHHhhCC--CCCcEEEccCCCCh
Q 022271 98 -YSEELVLEAHSAGVKVVPQ----------------------------DGLISLLPMVVDLIGD--RDIPIIAAGGIVDA 146 (300)
Q Consensus 98 -~~~~~v~~~~~~G~~v~~~----------------------------~~~~~ll~~v~~~~~~--~~iPViaaGGI~~g 146 (300)
..++++...++.|..+... ...+..+.++++.+.. .++|+|+.|||.++
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~ 220 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRK 220 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSH
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCH
Confidence 1244555555677776422 0123344445544410 15899999999999
Q ss_pred HHHHHHHHCCCcEEEeccccccCc
Q 022271 147 RGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+|+.++.. ||+||.+|++++...
T Consensus 221 ~dv~~l~~-Ga~gvlVGsAl~~~~ 243 (254)
T 1vc4_A 221 EELKALEG-LFDAVLIGTSLMRAP 243 (254)
T ss_dssp HHHHTTTT-TCSEEEECHHHHTSS
T ss_pred HHHHHHHc-CCCEEEEeHHHcCCC
Confidence 99999999 999999999999764
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=97.96 E-value=9.1e-06 Score=71.54 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=44.4
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+.++.++++.+ ++||++.|||.|.+++..++..|||+|.+||.++..++
T Consensus 67 ~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~dp~ 116 (247)
T 3tdn_A 67 DTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVENPS 116 (247)
T ss_dssp CHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHHCTH
T ss_pred cHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhhChH
Confidence 456778888776 89999999999999999999999999999999997644
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.95 E-value=7e-05 Score=66.27 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=91.0
Q ss_pred cHHHHHHHHh-CCceEEecCCCCC--CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc-
Q 022271 24 GPELVAAVAN-AGGLGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (300)
Q Consensus 24 ~~~la~avs~-aGglG~i~~~~~~--~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~- 99 (300)
..++|.+..+ |-++-++.-..|. +. +.|+++|+.++.|+--+=+.-+++ ++..+.+.|+++|.+.....+
T Consensus 63 ~~~iA~~y~~~A~~IsVlTd~~~F~gs~----~dL~~ir~~v~lPvLrKDfi~~~~--qi~ea~~~GAD~ilLi~a~l~~ 136 (251)
T 1i4n_A 63 LEDFIRMYDELADAISILTEKHYFKGDP----AFVRAARNLTCRPILAKDFYIDTV--QVKLASSVGADAILIIARILTA 136 (251)
T ss_dssp HHHHHHHHHHHCSEEEEECCCSSSCCCT----HHHHHHHTTCCSCEEEECCCCSTH--HHHHHHHTTCSEEEEEGGGSCH
T ss_pred HHHHHHHHHHhCCceEEEecccccCCCH----HHHHHHHHhCCCCEEEeeCCCCHH--HHHHHHHcCCCEEEEecccCCH
Confidence 3567766555 4445444221111 33 467788888888875544443333 466688999999987543322
Q ss_pred ---HHHHHHHHHCCCeEeec------------c-C----------------hhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 100 ---EELVLEAHSAGVKVVPQ------------D-G----------------LISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 100 ---~~~v~~~~~~G~~v~~~------------~-~----------------~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++++.+++.|..++.. . + .+....++.+.+. .++++|+.|||.+++
T Consensus 137 ~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip-~~~~vIaEsGI~t~e 215 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVP-DDTVVVAESGIKDPR 215 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSC-TTSEEEEESCCCCGG
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHHhCC-CCCEEEEeCCCCCHH
Confidence 34555566667666543 1 1 1234444544442 268999999999999
Q ss_pred HHHHHHHCCCcEEEeccccccCcc
Q 022271 148 GYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 148 ~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
|+..+..+ |++|.+|+.++.++.
T Consensus 216 dv~~~~~~-a~avLVG~aimr~~d 238 (251)
T 1i4n_A 216 ELKDLRGK-VNAVLVGTSIMKAEN 238 (251)
T ss_dssp GHHHHTTT-CSEEEECHHHHHCSS
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcC
Confidence 99999999 999999999998754
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-05 Score=72.12 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC-------c-----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP-------H-----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~-------~-----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.++.+|+..+ .|++|.+-.... . .+.++.+.+.|++.|.++.+.... . . .+
T Consensus 219 ~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~-~-~----~~------ 286 (376)
T 1icp_A 219 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKT-A-W----EK------ 286 (376)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC----------------
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccC-C-C----Cc------
Confidence 46677888888764 299999975421 1 345677778999999998653210 0 0 00
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
.....++.++++.+ ++|||+.||| +.+++.++|..| ||+|++|+.|++.+
T Consensus 287 ~~~~~~~~~vr~~~---~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P 337 (376)
T 1icp_A 287 IECTESLVPMRKAY---KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNP 337 (376)
T ss_dssp --CCCCSHHHHHHC---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred cccHHHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCc
Confidence 01235567788887 7999999999 999999999998 99999999999864
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.89 E-value=5.6e-05 Score=70.51 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCC--------C-c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAF--------P-H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~--------~-~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
.+.+.++.+|+..+ .|++|.+.... . . .+.++.+.+.|++.|.++.+... .+ .
T Consensus 213 ~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---------~~----~ 279 (364)
T 1vyr_A 213 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLA---------GG----K 279 (364)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTT---------BC----C
T ss_pred hHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCccc---------CC----C
Confidence 46667888888763 39999887642 1 1 23467778899999999864320 00 0
Q ss_pred ccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 116 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 116 ~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
.....++.++++.+ ++|||+.||| +++++.++|..| ||+|++|+.|+..+
T Consensus 280 -~~~~~~~~~v~~~~---~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P 330 (364)
T 1vyr_A 280 -PYSEAFRQKVRERF---HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANP 330 (364)
T ss_dssp -CCCHHHHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred -cccHHHHHHHHHHC---CCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhCh
Confidence 01245677888887 7999999999 999999999998 99999999999864
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=69.99 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------ 116 (300)
+.|+++|+.++.|+--+=+. .+..++..+.+.|+++|.+.....+ .++++.+++.|..++..
T Consensus 98 ~dL~~vr~~v~lPvLrKDFI--~d~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~ 175 (452)
T 1pii_A 98 NFLPIVSQIAPQPILCKDFI--IDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA 175 (452)
T ss_dssp THHHHHHHHCCSCEEEESCC--CSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEecc--CCHHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35777788788887443333 2344567788999999987654433 45666677888888754
Q ss_pred ----------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHH
Q 022271 117 ----------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKR 180 (300)
Q Consensus 117 ----------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~ 180 (300)
...+....++++.+.. ++++|+.|||.+++|+..+..+ |++|.+|+.++.++. .....++
T Consensus 176 lga~iIGinnr~L~t~~~dl~~~~~L~~~ip~-~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d--~~~~~~~ 251 (452)
T 1pii_A 176 LGAKVVGINNRDLRDLSIDLNRTRELAPKLGH-NVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDD--LHAAVRR 251 (452)
T ss_dssp TTCSEEEEESEETTTTEECTHHHHHHHHHHCT-TSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSC--HHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHhCCC-CCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcC--HHHHHHH
Confidence 0123445555555532 6899999999999999999999 999999999998754 3444555
Q ss_pred HH
Q 022271 181 KL 182 (300)
Q Consensus 181 ~i 182 (300)
.+
T Consensus 252 l~ 253 (452)
T 1pii_A 252 VL 253 (452)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=69.30 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcC-CcEEeeeecCCC------------cHHHHHHHHHcC------CcEEEEcCCCCcHHHHHHHHHC
Q 022271 49 DYLRDLIRKTRSLTE-RPFGVGVVLAFP------------HNENIKAILSEK------VAVLQVSWGEYSEELVLEAHSA 109 (300)
Q Consensus 49 ~~l~~~i~~~r~~~~-~P~gvnl~~~~~------------~~~~~~~~~e~g------~~~i~~~~G~~~~~~v~~~~~~ 109 (300)
..+.+.++.+|+..+ .|++|.+-.... ..+.++.+.+.| ++.|.++.|....... ..
T Consensus 222 rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~----~~ 297 (402)
T 2hsa_B 222 KFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQ----TE 297 (402)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTT----SS
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccC----Cc
Confidence 346677888888763 499999876421 134567777889 9999998653210000 00
Q ss_pred CCeEeec-cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 110 GVKVVPQ-DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 110 G~~v~~~-~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
...+.. .....++.++++.+ ++|||+.||| +++++.++|..| ||+|++|+.|++-+
T Consensus 298 -~~~~~~~~~~~~~~~~vk~~~---~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP 355 (402)
T 2hsa_B 298 -AGRLGSEEEEARLMRTLRNAY---QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNP 355 (402)
T ss_dssp -STTTTHHHHHHHHHHHHHHHC---SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred -cccccCCcchHHHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCc
Confidence 000000 01245667788887 7999999999 999999999998 99999999999874
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00027 Score=60.06 Aligned_cols=116 Identities=13% Similarity=0.038 Sum_probs=77.3
Q ss_pred HHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEeecc-----------
Q 022271 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQD----------- 117 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~~~~----------- 117 (300)
+.++++|+.+ +.|+-+.+...+..+..++.+.+.|++.|.++.+.. ..++++.+++.|..+....
T Consensus 42 ~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~ 121 (207)
T 3ajx_A 42 SVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQ 121 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHH
Confidence 3577777776 778888777654335568899999999998875432 1234455566566552210
Q ss_pred --------------------ChhchH-HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 --------------------GLISLL-PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 --------------------~~~~ll-~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
...... ..+++.... ++|+++.|||. .+.+..++..|||+|.+||.+...+
T Consensus 122 ~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~~~ 193 (207)
T 3ajx_A 122 EVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYGAA 193 (207)
T ss_dssp HHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccCCC
Confidence 000001 334433311 58999999998 7889999999999999999988754
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0003 Score=61.98 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------ 116 (300)
+.++++|+.++.|+--+=|. -++.++......|+++|.+-....+ .++.+..++.|..++.-
T Consensus 94 ~~L~~vr~~v~lPvLrKDFi--id~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~ 171 (258)
T 4a29_A 94 ETLRKIASSVSIPILMSDFI--VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALR 171 (258)
T ss_dssp HHHHHHHTTCSSCEEEESCC--CSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEeecccc--ccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc
Confidence 35677888888887433222 2456777777889998876433322 24445555666555432
Q ss_pred ------------cCh----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 ------------DGL----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 ------------~~~----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+ +....++.+.+. .++.+|+.+||.+++|+..+...|+|+|.+|+.|+.+++
T Consensus 172 ~~a~iIGINNRnL~tf~vdl~~t~~L~~~ip-~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d 241 (258)
T 4a29_A 172 IGARFIGIMSRDFETGEINKENQRKLISMIP-SNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPE 241 (258)
T ss_dssp TTCSEEEECSBCTTTCCBCHHHHHHHHTTSC-TTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCCcEEEEeCCCccccccCHHHHHHHHhhCC-CCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCc
Confidence 011 223334444442 268899999999999999999999999999999998754
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=68.16 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC------------cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP------------HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~------------~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.++.+|+..+ .|++|.+-.... ..+.++.+.+.|++.|.++.+.... .+
T Consensus 229 ~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~--------~~------ 294 (379)
T 3aty_A 229 LIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN--------QQ------ 294 (379)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS--------CC------
T ss_pred HHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC--------CC------
Confidence 45666788887654 489998776421 1345677778899999998654210 11
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
... . +.++++.+ ++|||+.||| +++++.++|..| ||+|++|+.|++.+
T Consensus 295 ~~~-~-~~~ir~~~---~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~P 343 (379)
T 3aty_A 295 IGD-V-VAWVRGSY---SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIANP 343 (379)
T ss_dssp CCC-H-HHHHHTTC---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred ccH-H-HHHHHHHC---CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhCc
Confidence 111 4 66777776 7999999999 999999999998 99999999999864
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.71 E-value=5.9e-05 Score=74.20 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=61.0
Q ss_pred HHHHHHHHHCCCeEee--c---c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEecccccc
Q 022271 100 EELVLEAHSAGVKVVP--Q---D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVA 168 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~--~---~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~ 168 (300)
.++.+++.+.|+..+. . . ..+.++.++++.+ ++|||++|||.+.+|+.+++. .||++|++|++|..
T Consensus 455 ~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~---~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 455 WELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAV---KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC---SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC---CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 4677778887765442 2 1 2567999999987 899999999999999999998 89999999999976
Q ss_pred CcccCCCHHHHHHHHc
Q 022271 169 SEESYAHPEYKRKLVE 184 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~ 184 (300)
.+- .-...|+.+.+
T Consensus 532 ~~~--~~~e~~~~l~~ 545 (555)
T 1jvn_A 532 GEF--TVNDVKEYLLE 545 (555)
T ss_dssp TSC--CHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHH
Confidence 532 23445554443
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=63.23 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=78.9
Q ss_pred HHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHH---HHHHCCCeEeec---------
Q 022271 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVL---EAHSAGVKVVPQ--------- 116 (300)
Q Consensus 53 ~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~---~~~~~G~~v~~~--------- 116 (300)
..++.+|+.+ ++|+-+-|+..+|. .+++.+.+ ++.++++.... +...++ .+++.|.++...
T Consensus 53 ~~v~~lr~~~p~~~~dvhLmv~dp~-~~i~~~~~--Ad~itvH~ea~~~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~ 129 (227)
T 1tqx_A 53 PVINNLKKYTKSIFFDVHLMVEYPE-KYVPLLKT--SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129 (227)
T ss_dssp HHHHHHGGGCSSCEEEEEEESSCGG-GGGGGCTT--SSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGG
T ss_pred HHHHHHHHhCCCCcEEEEEEEcCHH-HHHHHHHh--CCEEEEeecCCccCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHH
Confidence 5788899998 89999999998754 23333334 77777765332 345666 677777665432
Q ss_pred ----------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
...+.-+.++++..+ +++|.+.|||. .+.+..+..+|||.+++||.+..
T Consensus 130 ~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~--~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 130 LVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK--NLNIQVDGGLN-IETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp GHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc--CCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 012334555665543 68999999997 67899999999999999999876
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 207 ~ 207 (227)
T 1tqx_A 207 A 207 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=62.94 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC--cHHHHHHHHHC---------CCeEeec-----
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSA---------GVKVVPQ----- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~--~~~~v~~~~~~---------G~~v~~~----- 116 (300)
..++++|+.+++ -+.|+...| +.+++.+.+.|++.|+++.+.. +...++.+++. |.++...
T Consensus 61 ~~v~~lr~~~~~--DvhLMv~~p-~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~T 137 (237)
T 3cu2_A 61 IGIKYFPTHCFK--DVHLMVRNQ-LEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPET 137 (237)
T ss_dssp HHHHTSCTTSEE--EEEEECSCH-HHHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTS
T ss_pred HHHHHHhhhCCC--CeEEEEECH-HHHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCC
Confidence 467777777654 788876644 6789999999999999987542 45778888888 8776543
Q ss_pred -----------------------cC-------hhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHH--CCCcEEEe
Q 022271 117 -----------------------DG-------LISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALS--LGAQGICL 162 (300)
Q Consensus 117 -----------------------~~-------~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~--lGAdgV~~ 162 (300)
.+ .+.-+.++++..++ .++||.+.|||. .+.+..+.. .|||++++
T Consensus 138 p~~~l~~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~Vv 216 (237)
T 3cu2_A 138 PISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVS 216 (237)
T ss_dssp CGGGGTTTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEE
T ss_pred hHHHHHHHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEE
Confidence 00 23344555555421 258999999996 788999999 99999999
Q ss_pred ccccccC
Q 022271 163 GTRFVAS 169 (300)
Q Consensus 163 GT~fl~t 169 (300)
||++...
T Consensus 217 GSaIf~~ 223 (237)
T 3cu2_A 217 GSALFSG 223 (237)
T ss_dssp CGGGGSS
T ss_pred eeHHhCC
Confidence 9998864
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00028 Score=66.99 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhc------CCcEEeeeecCC--------Cc---HHHHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHCCC
Q 022271 50 YLRDLIRKTRSLT------ERPFGVGVVLAF--------PH---NENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGV 111 (300)
Q Consensus 50 ~l~~~i~~~r~~~------~~P~gvnl~~~~--------~~---~~~~~~~~e-~g~~~i~~~~G~~~~~~v~~~~~~G~ 111 (300)
-+.+.++++|+.. +.|++|.+.... .. .+.++.+.+ .|++.|.++.|....... ..
T Consensus 223 f~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~-----~~- 296 (419)
T 3l5a_A 223 LCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQN-----TS- 296 (419)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGC-----BC-
T ss_pred HHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCcccccc-----cc-
Confidence 4556677777764 568888876531 11 345777788 899999998654210000 00
Q ss_pred eEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcCCC
Q 022271 112 KVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 187 (300)
Q Consensus 112 ~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~ 187 (300)
..........++..+++.++. ++|||+.|||.|++++.+++.. ||+|.+|+.|++.++ +-+++.+...
T Consensus 297 ~~~g~~~~~~~a~~Ik~~v~~-~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPd------lv~ki~~G~~ 364 (419)
T 3l5a_A 297 RTPGDHFGRPVNQIVYEHLAG-RIPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPD------FVHKLAEQRP 364 (419)
T ss_dssp CCSSTTTTSBHHHHHHHHHTT-SSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTT------HHHHHHTTCG
T ss_pred CCCCccccHHHHHHHHHHcCC-CCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcH------HHHHHHcCCc
Confidence 000001134577788887732 5999999999999999999999 999999999998643 4455555433
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=74.48 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCC--------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-e
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFP--------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV-P 115 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~--------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~-~ 115 (300)
-+.+.++.+|+.. +.|+++.+..... . .+.++.+ +.+++.+.++.|.... + ......-. .
T Consensus 201 ~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l-~~~~d~~~v~~g~~~~-~----~~~~~~~~~~ 274 (729)
T 1o94_A 201 FWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMA-DSLVDMWDITIGDIAE-W----GEDAGPSRFY 274 (729)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHH-GGGCSEEEEEECCSTT-G----GGTSCCTTTC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHH-HhhcCEEEEeeecccc-c----ccccCCcccc
Confidence 4677788888876 7899999875311 1 2334444 4479999888764210 0 00000000 0
Q ss_pred ccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 116 QDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 116 ~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
..+ ...+..++++.+ ++|||+.|||.|++++.++|..| ||+|++|+.|++.++
T Consensus 275 ~~~~~~~~~~~i~~~~---~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~ 329 (729)
T 1o94_A 275 QQGHTIPWVKLVKQVS---KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPF 329 (729)
T ss_dssp CTTTTHHHHHHHHTTC---SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTT
T ss_pred CccccHHHHHHHHHHC---CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCch
Confidence 011 345667777776 89999999999999999999998 999999999998753
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00027 Score=70.82 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhc--CCcEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 49 DYLRDLIRKTRSLT--ERPFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 49 ~~l~~~i~~~r~~~--~~P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
..+.+.++.+|+.. +.|+++.+-.... . .+.++.+.+.|++.|.++.|.. .......... .. .
T Consensus 192 r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~-~~~~~~~~~~----~~-~ 265 (671)
T 1ps9_A 192 RFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWH-EARIPTIATP----VP-R 265 (671)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBT-TCSSCSSSTT----SC-T
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCcc-cccccccccc----CC-c
Confidence 34677788888876 7889888875421 1 3456777789999998875431 0000000000 00 1
Q ss_pred C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCc
Q 022271 118 G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 170 (300)
Q Consensus 118 ~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~ 170 (300)
+ .+.++.++++.+ ++||++.|||.|++++.+++..| ||+|++|+.|+..+
T Consensus 266 ~~~~~~~~~i~~~~---~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P 317 (671)
T 1ps9_A 266 GAFSWVTRKLKGHV---SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADA 317 (671)
T ss_dssp TTTHHHHHHHTTSC---SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCT
T ss_pred chHHHHHHHHHHhc---CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCc
Confidence 1 235566666665 79999999999999999999998 99999999999864
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=5.7e-05 Score=66.33 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++.|.++- +... +. .....+.++.++++.+ ++||++.|||.+.+++..++..|
T Consensus 34 ~~~a~~~~~~Gad~i~v~d--~~~~--------~~---~~~~~~~~i~~i~~~~---~iPvi~~Ggi~~~~~~~~~~~~G 97 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLD--ISAT--------HE---ERAILLDVVARVAERV---FIPLTVGGGVRSLEDARKLLLSG 97 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEE--CCSS--------TT---CHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEc--CCcc--------cc---CccccHHHHHHHHHhC---CCCEEEECCcCCHHHHHHHHHcC
Confidence 4556666777777766541 1000 00 0011345667777665 89999999999999999999999
Q ss_pred CcEEEeccccccCc
Q 022271 157 AQGICLGTRFVASE 170 (300)
Q Consensus 157 AdgV~~GT~fl~t~ 170 (300)
||+|.+|+.++..+
T Consensus 98 ad~V~lg~~~l~~p 111 (252)
T 1ka9_F 98 ADKVSVNSAAVRRP 111 (252)
T ss_dssp CSEEEECHHHHHCT
T ss_pred CCEEEEChHHHhCc
Confidence 99999999999654
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.004 Score=53.17 Aligned_cols=139 Identities=22% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.++.++| .+|++... -+.++++.++..+.+ ...+.-|.++.+.+.++..+.+.+.+.++|-++
T Consensus 7 Git~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~---~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLH- 82 (203)
T 1v5x_A 7 GITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEAL---GPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLH- 82 (203)
T ss_dssp CCCCHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHS---CSSSEEEEEESSCCHHHHHHHHHHTTCSEEEEC-
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhC---CCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEEC-
Confidence 577777677777666 59998421 235677666554433 233556777888777778888888999999999
Q ss_pred CCCcHHHHHHHHHCCCeEeec----------------------c---C-----hhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ----------------------D---G-----LISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~----------------------~---~-----~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
|..+.+.++.++. +..++.. . | .+.+++.+.. . +.|++.|||| +
T Consensus 83 G~e~~~~~~~l~~-~~~vika~~v~~~~~l~~~~~~~d~~LlD~~~gGtG~~fdW~~l~~~~~-~---~~p~~LAGGL-~ 156 (203)
T 1v5x_A 83 GEEPPEWAEAVGR-FYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLLA-T---GRRVILAGGI-A 156 (203)
T ss_dssp SCCCHHHHHHHTT-TSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHHH-T---TSCEEECSSC-C
T ss_pred CCCCHHHHHHhcc-CCCEEEEEEcCChHhhhhhhcCCCEEEEcCCCCCCCCccCHHHHHhhhc-c---CCcEEEECCC-C
Confidence 5456677877732 4444421 0 0 2345555222 1 5799999999 7
Q ss_pred hHHHHHHHHCCCcEEEeccccccC
Q 022271 146 ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++.+..++..++.||=+.|.+=.+
T Consensus 157 peNV~~ai~~~p~gVDvsSGvE~~ 180 (203)
T 1v5x_A 157 PENLEEVLALRPYALDLASGVEEA 180 (203)
T ss_dssp STTHHHHHHHCCSEEEESGGGEEE
T ss_pred HHHHHHHHhcCCCEEEeCCceecC
Confidence 778888887799999999887643
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00038 Score=60.21 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=72.9
Q ss_pred HHHHHhhcCCcEEe-eeecCCC----cHHHHHHHHHcCCcEEEEcCC---CCc---HHHHHHHHHCCCeEeec-------
Q 022271 55 IRKTRSLTERPFGV-GVVLAFP----HNENIKAILSEKVAVLQVSWG---EYS---EELVLEAHSAGVKVVPQ------- 116 (300)
Q Consensus 55 i~~~r~~~~~P~gv-nl~~~~~----~~~~~~~~~e~g~~~i~~~~G---~~~---~~~v~~~~~~G~~v~~~------- 116 (300)
++.+|+.++.|++. |+....+ -+-.++.+.+.|++.|.+..- .|. .+.++.+++.|..++..
T Consensus 45 l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~ 124 (219)
T 2h6r_A 45 LRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTS 124 (219)
T ss_dssp HHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHH
T ss_pred HHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 45555555778876 5322111 012367888899999988432 222 34455556778766543
Q ss_pred -------------cChh---------ch----HHHHHHhhCC--CCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 -------------DGLI---------SL----LPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 -------------~~~~---------~l----l~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+.. .. +.++.+.++. .++||++.|||.+++++..+...|+|||.+|++++-
T Consensus 125 ~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 125 KAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK 204 (219)
T ss_dssp HHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHT
T ss_pred HHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhC
Confidence 0000 11 1222222111 269999999999999999999999999999999998
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 205 ~~ 206 (219)
T 2h6r_A 205 AK 206 (219)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00011 Score=64.16 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++.+.++ + + .. - .... ...+.++.+++ .+ ++||++.|||.+.+++..++..|
T Consensus 33 ~~~a~~~~~~Gad~i~v~-d-~-~~-~--~~~~-------~~~~~~i~~i~-~~---~ipvi~~Ggi~~~~~~~~~~~~G 95 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVV-D-L-SN-A--IENS-------GENLPVLEKLS-EF---AEHIQIGGGIRSLDYAEKLRKLG 95 (241)
T ss_dssp HHHHHHHHHTTCCCEEEE-E-H-HH-H--HHCC-------CTTHHHHHHGG-GG---GGGEEEESSCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEe-c-c-cc-c--ccCC-------chhHHHHHHHH-hc---CCcEEEECCCCCHHHHHHHHHCC
Confidence 456777777888877765 1 1 10 0 0111 12456667766 55 79999999999999999999999
Q ss_pred CcEEEeccccccCc
Q 022271 157 AQGICLGTRFVASE 170 (300)
Q Consensus 157 AdgV~~GT~fl~t~ 170 (300)
||+|.+|+.++..+
T Consensus 96 ad~V~lg~~~l~~p 109 (241)
T 1qo2_A 96 YRRQIVSSKVLEDP 109 (241)
T ss_dssp CCEEEECHHHHHCT
T ss_pred CCEEEECchHhhCh
Confidence 99999999999764
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0012 Score=57.24 Aligned_cols=134 Identities=18% Similarity=0.273 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.++| +.++--. +.+++. .+.|+++++.. +..++.+.+. ..+.++.+++.|+++|... + ...+++
T Consensus 32 ~~~~~al~~gG-v~~iel~-~k~~~~-~~~i~~l~~~~~~l~vgaGtvl---~~d~~~~A~~aGAd~v~~p-~-~d~~v~ 103 (224)
T 1vhc_A 32 LPLADTLAKNG-LSVAEIT-FRSEAA-ADAIRLLRANRPDFLIAAGTVL---TAEQVVLAKSSGADFVVTP-G-LNPKIV 103 (224)
T ss_dssp HHHHHHHHHTT-CCEEEEE-TTSTTH-HHHHHHHHHHCTTCEEEEESCC---SHHHHHHHHHHTCSEEECS-S-CCHHHH
T ss_pred HHHHHHHHHcC-CCEEEEe-ccCchH-HHHHHHHHHhCcCcEEeeCcEe---eHHHHHHHHHCCCCEEEEC-C-CCHHHH
Confidence 46677766644 6665331 334433 34666565543 4556666533 4688999999999999654 3 245667
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CC
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GA 157 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GA 157 (300)
+.+++.|..++.. .+ -...+.+++..+. ++|+++.||| +.+.+..++.+ |+
T Consensus 104 ~~ar~~g~~~i~Gv~t~~e~~~A~~~Gad~vk~Fpa~~~gG~~~lk~l~~~~~--~ipvvaiGGI-~~~N~~~~l~agga 180 (224)
T 1vhc_A 104 KLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYA--QLQIMPTGGI-GLHNIRDYLAIPNI 180 (224)
T ss_dssp HHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTTT--TCEEEEBSSC-CTTTHHHHHTSTTB
T ss_pred HHHHHhCCCEEeccCCHHHHHHHHHCCCCEEEEeeCccccCHHHHHHHHhhCC--CCeEEEECCc-CHHHHHHHHhcCCC
Confidence 7777777665432 11 1344555555442 6999999999 56899999999 99
Q ss_pred cEEEeccccccCc
Q 022271 158 QGICLGTRFVASE 170 (300)
Q Consensus 158 dgV~~GT~fl~t~ 170 (300)
++|. ||.+....
T Consensus 181 ~~v~-gS~i~~~~ 192 (224)
T 1vhc_A 181 VACG-GSWFVEKK 192 (224)
T ss_dssp CCEE-ECGGGCHH
T ss_pred EEEE-EchhcCcc
Confidence 9999 98887653
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=59.03 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=93.3
Q ss_pred ccceecCCCC---CCCCcHHHHHHHHhCCceEEecCC---------------CCCCHHHHHHHHHHHHhh--cCCcEEee
Q 022271 10 EYGIVQAPLG---PDISGPELVAAVANAGGLGLLRAP---------------DWEAPDYLRDLIRKTRSL--TERPFGVG 69 (300)
Q Consensus 10 ~~Pii~apM~---~g~s~~~la~avs~aGglG~i~~~---------------~~~~~~~l~~~i~~~r~~--~~~P~gvn 69 (300)
+.|++.+ +. ++.....+..++.++|.-|++.-+ ..+..+...+.|++.|++ ..-|+.
T Consensus 94 ~iPV~Ag-v~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v-- 170 (286)
T 2p10_A 94 HTPVLAG-VNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYV-- 170 (286)
T ss_dssp SSCEEEE-ECTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEE--
T ss_pred CCCEEEE-ECCcCCCcCHHHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEec--
Confidence 5788865 53 122345777999999999996322 113556677777777775 123332
Q ss_pred eecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCC--CCCcEEEcc-CCCCh
Q 022271 70 VVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGD--RDIPIIAAG-GIVDA 146 (300)
Q Consensus 70 l~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~--~~iPViaaG-GI~~g 146 (300)
.+.+..+.+.+.|+|+|..+.|......+-. |..+-. ......+.++.++++. .++.|+..| ||.++
T Consensus 171 -----~~~eeA~amA~agpDiI~~h~glT~gglIG~----~~avs~-~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstp 240 (286)
T 2p10_A 171 -----FSPEDAVAMAKAGADILVCHMGLTTGGAIGA----RSGKSM-DDCVSLINECIEAARTIRDDIIILSHGGPIANP 240 (286)
T ss_dssp -----CSHHHHHHHHHHTCSEEEEECSCC-------------CCCH-HHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSH
T ss_pred -----CCHHHHHHHHHcCCCEEEECCCCCCCCcccC----CCcccH-HHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCH
Confidence 2467888899999999999876432222321 111000 0012355555554421 366666665 99999
Q ss_pred HHHHHHHHC--CCcEEEeccccccCc
Q 022271 147 RGYVAALSL--GAQGICLGTRFVASE 170 (300)
Q Consensus 147 ~~v~aal~l--GAdgV~~GT~fl~t~ 170 (300)
+|+..++.+ |++|+..+|.+...+
T Consensus 241 eDv~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 241 EDARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp HHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred HHHHHHHhcCCCccEEEeehhhhcCC
Confidence 999999999 999999999987763
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=72.82 Aligned_cols=148 Identities=13% Similarity=0.189 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCCc------H---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFPH------N---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~~------~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
-+.+.++.+|+.. +.|+++.+...... + +.++.+.+ +++.+.++.|.... .. .... ....+
T Consensus 209 ~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~----~~-~~~~--~~~~~ 280 (690)
T 3k30_A 209 LLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEG----DS-VTSR--FAPEG 280 (690)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHH----HT-CCTT--TCCTT
T ss_pred HHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccc----cC-CCCc--cCCcc
Confidence 5667788888876 56889888665321 2 23444444 79999998774111 00 0000 00011
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecc
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGR 196 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~ 196 (300)
...+..++++++ ++|||+.|||.+++++.+++..| ||+|.+|+.|++.++ +-+++.+.+..++..-.+.
T Consensus 281 ~~~~~~~~i~~~~---~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~------~~~~~~~g~~~~i~~c~~c 351 (690)
T 3k30_A 281 RQEEFVAGLKKLT---TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPF------LPNKIRDGRLNLIRECIGC 351 (690)
T ss_dssp TTHHHHTTSGGGC---SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTT------HHHHHHTTCGGGCCCCCCC
T ss_pred ccHHHHHHHHHHc---CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCcc------HHHHHHcCCccccccccch
Confidence 234555666666 79999999999999999999998 999999999998743 4444444332221111110
Q ss_pred c-----CCCCCCCceecChhhHh
Q 022271 197 A-----RWPGAPHRVLQTPFFSN 214 (300)
Q Consensus 197 ~-----~~~g~~~R~l~n~~~~~ 214 (300)
. ...+.+.++..|+.+.+
T Consensus 352 ~~C~~~~~~~~~~~C~vnp~~g~ 374 (690)
T 3k30_A 352 NICVSGDLTMSPIRCTQNPSMGE 374 (690)
T ss_dssp CHHHHHHHTTSCCCCSSCTTTTT
T ss_pred hhhhhcccCCCcccCCcCcccCc
Confidence 0 01245678888887654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0017 Score=56.00 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.++| +.++--. ..++.. .+.|+++++.. +..++.+.+ -..+.++.+++.|+++|... +. ..+++
T Consensus 31 ~~~~~al~~gG-v~~iel~-~k~~~~-~~~i~~l~~~~~~~~vgagtv---i~~d~~~~A~~aGAd~v~~p-~~-d~~v~ 102 (214)
T 1wbh_A 31 VPMAKALVAGG-VRVLNVT-LRTECA-VDAIRAIAKEVPEAIVGAGTV---LNPQQLAEVTEAGAQFAISP-GL-TEPLL 102 (214)
T ss_dssp HHHHHHHHHTT-CCEEEEE-SCSTTH-HHHHHHHHHHCTTSEEEEESC---CSHHHHHHHHHHTCSCEEES-SC-CHHHH
T ss_pred HHHHHHHHHcC-CCEEEEe-CCChhH-HHHHHHHHHHCcCCEEeeCEE---EEHHHHHHHHHcCCCEEEcC-CC-CHHHH
Confidence 36777766654 6665331 334433 34566565443 444566543 24688999999999988765 33 45667
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC-CC
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GA 157 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GA 157 (300)
+..++.|..++.. .+ -...+.+++..+. ++|+++.||| +.+.+..++.+ |+
T Consensus 103 ~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~Fpa~~~gG~~~lk~i~~~~~--~ipvvaiGGI-~~~n~~~~l~agg~ 179 (214)
T 1wbh_A 103 KAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS--QVRFCPTGGI-SPANYRDYLALKSV 179 (214)
T ss_dssp HHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCT--TCEEEEBSSC-CTTTHHHHHTSTTB
T ss_pred HHHHHhCCCEEEecCCHHHHHHHHHCCCCEEEEecCccccCHHHHHHHhhhCC--CCeEEEECCC-CHHHHHHHHhcCCC
Confidence 7777777665531 11 1344455554442 7999999999 56899999999 99
Q ss_pred cEEEeccccccCc
Q 022271 158 QGICLGTRFVASE 170 (300)
Q Consensus 158 dgV~~GT~fl~t~ 170 (300)
++|. ||.+....
T Consensus 180 ~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 180 LCIG-GSWLVPAD 191 (214)
T ss_dssp SCEE-EGGGSCHH
T ss_pred eEEE-eccccChh
Confidence 9999 98887553
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=62.82 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=41.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+.++.++++.+ ++||++.|||.+.+++..++..|||+|.+|+..+..+
T Consensus 63 ~~~i~~i~~~~---~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p 110 (253)
T 1thf_D 63 LELVEKVAEQI---DIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp HHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhCh
Confidence 45566666654 7999999999999999999999999999999988653
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=63.69 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=41.2
Q ss_pred hhchHHHHHHhhC-CCCCcEEEccCCCChHHHHHHHHC--CCcEEEecccc
Q 022271 119 LISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 166 (300)
Q Consensus 119 ~~~ll~~v~~~~~-~~~iPViaaGGI~~g~~v~aal~l--GAdgV~~GT~f 166 (300)
.+.++.++.+.+. ..++|||++|||.+.+|+.+++.+ |+++|++|++|
T Consensus 189 d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 189 DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 4678888888761 004999999999999999999998 99999999998
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0044 Score=53.00 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=92.4
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.++.++| .+|++... -+.++++.++..+.+. ..+.-|.++.+.+.++..+.+.+.+.++|-++
T Consensus 8 Git~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~---~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLH- 83 (205)
T 1nsj_A 8 GITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELP---PFVFRVGVFVNEEPEKILDVASYVQLNAVQLH- 83 (205)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCC---CCCCEEEEEeCCCHHHHHHHHHhhCCCEEEEC-
Confidence 577777677777666 59998421 2356776665544332 34556777888777777888888999999999
Q ss_pred CCCcHHHHHHHHHCCCeEeecc-----------------------------C-----hhchHHHHHHhhCCCCCcEEEcc
Q 022271 96 GEYSEELVLEAHSAGVKVVPQD-----------------------------G-----LISLLPMVVDLIGDRDIPIIAAG 141 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~~-----------------------------~-----~~~ll~~v~~~~~~~~iPViaaG 141 (300)
|..+.+.+..++. +..++... | .+++++.+. .. +.|++.||
T Consensus 84 G~e~~~~~~~l~~-~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~-~~---~~p~~LAG 158 (205)
T 1nsj_A 84 GEEPIELCRKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYR-DR---FRYLVLSG 158 (205)
T ss_dssp SCCCHHHHHHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGG-GG---SSCEEEES
T ss_pred CCCCHHHHHHHhc-CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhh-cC---CCcEEEEC
Confidence 5445677777642 34544320 0 122333221 11 57999999
Q ss_pred CCCChHHHHHHHH-CCCcEEEeccccccC
Q 022271 142 GIVDARGYVAALS-LGAQGICLGTRFVAS 169 (300)
Q Consensus 142 GI~~g~~v~aal~-lGAdgV~~GT~fl~t 169 (300)
|| +++.+..++. .++.||=+.|.+=.+
T Consensus 159 GL-~peNV~~ai~~~~p~gVDvsSGvE~~ 186 (205)
T 1nsj_A 159 GL-NPENVRSAIDVVRPFAVDVSSGVEAF 186 (205)
T ss_dssp SC-CTTTHHHHHHHHCCSEEEESGGGEEE
T ss_pred CC-CHHHHHHHHHhcCCCEEEECCceecC
Confidence 99 7778888876 699999999887643
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00025 Score=62.66 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++.|.++- +.. .|. .....+.++.++++.+ ++||++.|||.+.+++..++..|
T Consensus 33 ~~~a~~~~~~Ga~~i~v~d--~~~--------~~~---~~g~~~~~i~~i~~~~---~iPvi~~ggi~~~~~i~~~~~~G 96 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLTS--IDR--------DGT---KSGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAG 96 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEE--TTT--------SSC---SSCCCHHHHHHHGGGC---CSCEEEESCCCSTHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEe--cCc--------ccC---CCcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcC
Confidence 4556666667777666531 100 000 0012356777777765 89999999999999999999999
Q ss_pred CcEEEeccccc-cCcccCCCHHHHHHHHc
Q 022271 157 AQGICLGTRFV-ASEESYAHPEYKRKLVE 184 (300)
Q Consensus 157 AdgV~~GT~fl-~t~Es~~~~~~k~~i~~ 184 (300)
||+|.+|+.++ ...+ ++.+++.+..
T Consensus 97 ad~v~lg~~~~~~~~~---~~~~~~~~~~ 122 (266)
T 2w6r_A 97 ADKALAASVFHFREID---MRELKEYLKK 122 (266)
T ss_dssp CSEEECCCCC---------CHHHHHHCC-
T ss_pred CcHhhhhHHHHhCCCC---HHHHHHHHHH
Confidence 99999999998 3111 3556665433
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00048 Score=60.01 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=41.7
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
..+.++++.+ ++||++.|||.+++++..++.+|||+|.+|+..+..+
T Consensus 64 ~~i~~i~~~~---~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~p 110 (244)
T 2y88_A 64 ELLAEVVGKL---DVQVELSGGIRDDESLAAALATGCARVNVGTAALENP 110 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred HHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhCh
Confidence 6677777776 7999999999999999999999999999999987653
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.002 Score=57.79 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC--cHH----HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP--HNE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~~----~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++..+.| .++++.... ..+ ..+.+.+.|+++|-++.|-.+ .|. +....
T Consensus 156 ~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~---------~GA----T~edv 221 (288)
T 3oa3_A 156 RYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFNG---------PGA----SIENV 221 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSS---------CCC----CHHHH
T ss_pred cHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC---------CCC----CHHHH
Confidence 5678888999998876666 377776532 222 356677889999988766321 010 01134
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.++.++++... .++||.++|||.|.+++.+++.+||+-+
T Consensus 222 ~lmr~~v~~~g-~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 222 SLMSAVCDSLQ-SETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp HHHHHHHHHSS-SCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 55566664322 2799999999999999999999999943
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0033 Score=54.57 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=86.5
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.++| +.++--. ..++..+ +.|+++++. .+..++.+.+. ..+.++.+++.|+++|... + ...+++
T Consensus 41 ~~~~~al~~gG-v~~iel~-~k~~~~~-~~i~~l~~~~~~~~igagtvl---~~d~~~~A~~aGAd~v~~p-~-~d~~v~ 112 (225)
T 1mxs_A 41 LPLADALAAGG-IRTLEVT-LRSQHGL-KAIQVLREQRPELCVGAGTVL---DRSMFAAVEAAGAQFVVTP-G-ITEDIL 112 (225)
T ss_dssp HHHHHHHHHTT-CCEEEEE-SSSTHHH-HHHHHHHHHCTTSEEEEECCC---SHHHHHHHHHHTCSSEECS-S-CCHHHH
T ss_pred HHHHHHHHHCC-CCEEEEe-cCCccHH-HHHHHHHHhCcccEEeeCeEe---eHHHHHHHHHCCCCEEEeC-C-CCHHHH
Confidence 46777766654 6665332 3444433 456655544 34556766542 4688899999999988654 3 245666
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCC
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGA 157 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGA 157 (300)
+..++.|...+.. .+ -...+.+++..+ .++|+++.||| +.+.+..++. .|+
T Consensus 113 ~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~vk~FPa~~~~G~~~lk~i~~~~--~~ipvvaiGGI-~~~N~~~~l~~~Ga 189 (225)
T 1mxs_A 113 EAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPF--GDIRFCPTGGV-NPANVRNYMALPNV 189 (225)
T ss_dssp HHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTT--TTCEEEEBSSC-CTTTHHHHHHSTTB
T ss_pred HHHHHhCCCEEEeeCCHHHHHHHHHCCCCEEEEccCccccCHHHHHHHHhhC--CCCeEEEECCC-CHHHHHHHHhccCC
Confidence 7667777665531 11 123344444433 27999999999 6779999999 699
Q ss_pred cEEEeccccccCc
Q 022271 158 QGICLGTRFVASE 170 (300)
Q Consensus 158 dgV~~GT~fl~t~ 170 (300)
++|. ||.+....
T Consensus 190 ~~v~-gSai~~~~ 201 (225)
T 1mxs_A 190 MCVG-TTWMLDSS 201 (225)
T ss_dssp CCEE-ECTTSCHH
T ss_pred EEEE-EchhcCch
Confidence 9999 98887643
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=55.59 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=39.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+.++.++.+.+. ++|||++||+++-+|+.+. ..+++||.+|++|..
T Consensus 183 d~~l~~~l~~~~~--~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~ 229 (243)
T 4gj1_A 183 NVRLYKLIHEIFP--NICIQASGGVASLKDLENL-KGICSGVIVGKALLD 229 (243)
T ss_dssp CHHHHHHHHHHCT--TSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHT
T ss_pred CHHHHHHHHHhcC--CCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHC
Confidence 4568888888752 6999999999999999875 567999999999854
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00084 Score=63.04 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=53.9
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc------------ChhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD------------GLISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 79 ~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~------------~~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
.++.+.+.+.+++..-.+....+..+.+.+.|...+... ..+.-+.++++.. ++||++ |||.+.
T Consensus 147 ~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~---~~pvi~-ggi~t~ 222 (393)
T 2qr6_A 147 RIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL---DVPVIA-GGVNDY 222 (393)
T ss_dssp HHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC---SSCEEE-ECCCSH
T ss_pred HHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc---CCCEEE-CCcCCH
Confidence 345555566666543222223455566666776554210 1334466777765 799999 999999
Q ss_pred HHHHHHHHCCCcEEEecc
Q 022271 147 RGYVAALSLGAQGICLGT 164 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~GT 164 (300)
+++..++.+|||+|.+|+
T Consensus 223 e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 223 TTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp HHHHHHHTTTCSEEEESC
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 999999999999999986
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00062 Score=59.39 Aligned_cols=46 Identities=33% Similarity=0.494 Sum_probs=40.9
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.++.++++.+ ++||++.|||.|++++..++.+|||+|.+|+..+..
T Consensus 65 ~~i~~i~~~~---~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~ 110 (244)
T 1vzw_A 65 ALIAEVAQAM---DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 110 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred HHHHHHHHhc---CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC
Confidence 5677777766 799999999999999999999999999999988765
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0032 Score=55.88 Aligned_cols=101 Identities=13% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhhc---CCcEEeeeecCC-------CcH---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCe
Q 022271 46 EAPDYLRDLIRKTRSLT---ERPFGVGVVLAF-------PHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVK 112 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~---~~P~gvnl~~~~-------~~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~ 112 (300)
.+.+...++++++++.. +.|+-+|..... +.+ ...+.+.+.|+++|-+++ |
T Consensus 118 ~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~--~-------------- 181 (263)
T 1w8s_A 118 GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY--T-------------- 181 (263)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC--C--------------
T ss_pred cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC--C--------------
Confidence 35566777777776643 567766643310 111 123556677888777764 1
Q ss_pred EeeccChhchHHHHHHhhCCCCC-cEEEccCCC--ChHHHHHHH----HCCCcEEEeccccccCc
Q 022271 113 VVPQDGLISLLPMVVDLIGDRDI-PIIAAGGIV--DARGYVAAL----SLGAQGICLGTRFVASE 170 (300)
Q Consensus 113 v~~~~~~~~ll~~v~~~~~~~~i-PViaaGGI~--~g~~v~aal----~lGAdgV~~GT~fl~t~ 170 (300)
+....+.++++.+ ++ ||+++|||. |.+++.+.+ ..||+|+.+|+..+..+
T Consensus 182 -----~~~e~~~~~~~~~---~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~ 238 (263)
T 1w8s_A 182 -----GDPKTFSWAVKVA---GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 238 (263)
T ss_dssp -----SSHHHHHHHHHHT---TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred -----CCHHHHHHHHHhC---CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCc
Confidence 1235566677666 45 999999999 888877666 89999999999988774
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0027 Score=54.96 Aligned_cols=101 Identities=26% Similarity=0.275 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC--c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP--H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|.++++..+.+ .++++.... . ....+.+.+.|+++|=++.|-.+. |. +....
T Consensus 101 ~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~~~---------ga----t~~dv 166 (220)
T 1ub3_A 101 DLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPR---------GA----SLEDV 166 (220)
T ss_dssp CHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSSSC---------CC----CHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC---------CC----CHHHH
Confidence 5677788888888876554 677665422 1 234567778889998877553210 00 00122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc--EEEeccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ--GICLGTR 165 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd--gV~~GT~ 165 (300)
.++.++. . .++||.++|||.|.+++.+++.+||+ |+-.|..
T Consensus 167 ~~m~~~v---g-~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~ 209 (220)
T 1ub3_A 167 ALLVRVA---Q-GRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVA 209 (220)
T ss_dssp HHHHHHH---T-TSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHH
T ss_pred HHHHHhh---C-CCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHH
Confidence 3333333 1 37999999999999999999999999 6555544
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0045 Score=53.04 Aligned_cols=114 Identities=10% Similarity=0.028 Sum_probs=73.0
Q ss_pred HHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCCeEe-----e---c-----
Q 022271 54 LIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVV-----P---Q----- 116 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~~v~-----~---~----- 116 (300)
.++.+|+.. +.++-..+-..+......+.+.+.|+++|.++.... ....++.+++.|..++ . .
T Consensus 46 ~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll~~~t~~~~~~l 125 (216)
T 1q6o_A 46 AVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQW 125 (216)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeeeeCCChhhHHHH
Confidence 466666652 233333332223345566788899999999985322 2355666777777742 2 0
Q ss_pred ------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.| ...-+.++++... .++||++.|||. .+.+..++..|||++++||....+
T Consensus 126 ~~~~~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~-~~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~a 197 (216)
T 1q6o_A 126 RDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDA 197 (216)
T ss_dssp HHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHTS
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcCC
Confidence 01 1223344544442 258899999998 778889999999999999998765
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=54.49 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=71.1
Q ss_pred HHHHHhh--cCCcEEeeee--cCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHC-CCeEeeccC-----------
Q 022271 55 IRKTRSL--TERPFGVGVV--LAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSA-GVKVVPQDG----------- 118 (300)
Q Consensus 55 i~~~r~~--~~~P~gvnl~--~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~-G~~v~~~~~----------- 118 (300)
++++|+. +..++=++++ ...+ ...++.+.+.|+++|+++.-. ..+.++.+++. |+.+.+..+
T Consensus 43 i~~lr~~~~~~v~~D~kl~DI~~t~-~~~v~~~~~~Gad~vtvh~~~-g~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~~ 120 (208)
T 2czd_A 43 IRRLKEETGVEIIADLKLADIPNTN-RLIARKVFGAGADYVIVHTFV-GRDSVMAVKELGEIIMVVEMSHPGALEFINPL 120 (208)
T ss_dssp HHHHHHHHCCEEEEEEEECSCHHHH-HHHHHHHHHTTCSEEEEESTT-CHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred HHHHHHcCCCEEEEEeeeCchHHHH-HHHHHHHHhcCCCEEEEeccC-CHHHHHHHHHhCCcEEEEecCCcchhhHHHHH
Confidence 5556665 3333444444 2222 557788889999999998643 35568888777 444443211
Q ss_pred ---------------------hhchHHHHHHhhCCCCCcEEEccCCCC-hHHHHHHHHCCCcEEEeccccccC
Q 022271 119 ---------------------LISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 ---------------------~~~ll~~v~~~~~~~~iPViaaGGI~~-g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...-+.++++... .-++++.|||.. +.++..++.+|||.+.+|+..+.+
T Consensus 121 v~~~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~~--~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a 191 (208)
T 2czd_A 121 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK--EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA 191 (208)
T ss_dssp HHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSC--TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS
T ss_pred HHHHHHHHHHhCCcEEEECCCChHHHHHHHHhCC--CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC
Confidence 0112334444431 236789999986 557889999999999999988865
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=56.27 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=48.0
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
..++.++.... ++|||+.||+.+.+++.+++..||+||++|++|...+- .....++.+.+.
T Consensus 163 ~~~i~~~~~~~---~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~--~~~~~~~~l~~~ 223 (237)
T 3cwo_X 163 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREI--DVRELKEYLKKH 223 (237)
T ss_dssp HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSS--CHHHHHHHHHTT
T ss_pred HHHHHHHHHhc---CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCC--CHHHHHHHHHHC
Confidence 34666666654 79999999999999999999999999999999986542 345566665543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=57.52 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=56.1
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-++.+...+.|+.-+|. ...+.++.++.+.. .+|+-..|||.+-+++..+|.+|||-|.+||..+.
T Consensus 33 P~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~---~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~ 109 (243)
T 4gj1_A 33 PLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEV---SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIK 109 (243)
T ss_dssp HHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHC---CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTT
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhc---CCCeEeccccccHHHHHHHHHcCCCEEEEcccccc
Confidence 566777777777766654 22456788888776 79999999999999999999999999999998876
Q ss_pred Cc
Q 022271 169 SE 170 (300)
Q Consensus 169 t~ 170 (300)
.+
T Consensus 110 ~p 111 (243)
T 4gj1_A 110 DA 111 (243)
T ss_dssp CH
T ss_pred CC
Confidence 53
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=54.39 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC--cH----HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP--HN----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~~----~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++..+.. -++++.... .. ...+.+.+.|+++|-++.|-.+ .|.. ....
T Consensus 125 ~~~~v~~eI~~v~~a~~~~-~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~~---------ggAt----~~dv 190 (239)
T 3ngj_A 125 KYDDVEKDVKAVVDASGKA-LTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFGT---------HGAT----PEDV 190 (239)
T ss_dssp CHHHHHHHHHHHHHHHTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSSS---------CCCC----HHHH
T ss_pred cHHHHHHHHHHHHHHhcCC-ceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCCC---------CCCC----HHHH
Confidence 5577888888888775432 355555322 12 2345557889999987755311 0000 0112
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.++.++.. .+++|.++|||.|.+++.+++.+||+-+
T Consensus 191 ~lmr~~vg----~~v~VKasGGIrt~~da~~~i~aGA~ri 226 (239)
T 3ngj_A 191 KLMKDTVG----DKALVKAAGGIRTFDDAMKMINNGASRI 226 (239)
T ss_dssp HHHHHHHG----GGSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred HHHHHhhC----CCceEEEeCCCCCHHHHHHHHHhcccce
Confidence 33333332 2799999999999999999999999954
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.008 Score=58.77 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=39.9
Q ss_pred hchHHHHHHhhC---CCCCcEEEccCCCChHHHHHHHH--------CCCcEEEeccccccCc
Q 022271 120 ISLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALS--------LGAQGICLGTRFVASE 170 (300)
Q Consensus 120 ~~ll~~v~~~~~---~~~iPViaaGGI~~g~~v~aal~--------lGAdgV~~GT~fl~t~ 170 (300)
+..+.++++.++ ..++||++-||| +.+.+..++. .|||||.+++.++.++
T Consensus 156 ~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~ 216 (540)
T 3nl6_A 156 TAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASL 216 (540)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCT
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhcCC
Confidence 445666666541 127999999999 8899999998 8999999999998764
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0009 Score=58.03 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+.|++.+.++--..... + ....+.++.++++.+ ++||++.|||.+.+++..++.+|
T Consensus 36 ~~~a~~~~~~G~d~i~v~~~~~~~~--------~-----~~~~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~G 99 (253)
T 1h5y_A 36 VEMAVRYEEEGADEIAILDITAAPE--------G-----RATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAG 99 (253)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCCTT--------T-----HHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc--------C-----CcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcC
Confidence 4566777777887665541100000 0 011345677777776 79999999999999999999999
Q ss_pred CcEEEeccccccC
Q 022271 157 AQGICLGTRFVAS 169 (300)
Q Consensus 157 AdgV~~GT~fl~t 169 (300)
||+|.+|+.++..
T Consensus 100 ad~V~i~~~~~~~ 112 (253)
T 1h5y_A 100 ADKVSVNTAAVRN 112 (253)
T ss_dssp CSEEEESHHHHHC
T ss_pred CCEEEEChHHhhC
Confidence 9999999988754
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0093 Score=51.73 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC--c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP--H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~--~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++..+. ..++++.... . ....+.+.+.|+++|-++.|-.+.++-....+.|. .+....
T Consensus 96 ~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~g---At~~dv 171 (226)
T 1vcv_A 96 RWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVH---STPERA 171 (226)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSS---CCHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCC---CCHHHH
Confidence 568889999999987654 3677665432 2 23467778899999999866544444443322221 111133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC---CCc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQ 158 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l---GAd 158 (300)
.++.++.+.+. .++||-++|||.+.+++.+++.+ ||+
T Consensus 172 ~lm~~~i~~~g-~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 172 AAIARYIKEKG-YRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp HHHHHHHHHHT-CCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred HHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 45555544453 26999999999999999999999 998
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.012 Score=51.90 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCC---cH---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP---HN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+.+++..+. .-++++.... ++ ...+.+.+.|+++|=++.|-.+ .| .++
T Consensus 141 ~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~---------~G-------AT~ 203 (260)
T 3r12_A 141 EWEYVYEDIRSVVESVKG-KVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFGT---------GG-------ATA 203 (260)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSS---------CC-------CCH
T ss_pred cHHHHHHHHHHHHHhcCC-CcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCCCC---------CC-------CCH
Confidence 567778888888876542 2345555432 12 2355666788888877765321 01 122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.-+..+++.+. .+++|-++|||.|.+++.+++.+||+-
T Consensus 204 edV~lm~~~vg-~~v~VKaAGGIrt~~~al~mi~aGA~R 241 (260)
T 3r12_A 204 EDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADR 241 (260)
T ss_dssp HHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCce
Confidence 22222333333 379999999999999999999999994
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.058 Score=46.75 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=83.4
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.+ .++| .+|++... -+.++++.++.++. ....++.|.++.. ..+..+.+.+.+.++|-++
T Consensus 27 Git~~ed~~a-~~~gaD~iGfIf~~~SpR~V~~~~A~~i~~~---~~~~~~~v~v~v~--~~ei~~~i~~~~ld~vQLH- 99 (228)
T 4aaj_A 27 GIKSLEELEI-VEKHADATGVVVNSNSKRRIPLEKAREIIEN---SAIPVFLVSTMVG--FSEWAMAIERTGAQYIQVH- 99 (228)
T ss_dssp CCCSHHHHHH-HHTTCSEEEEECSSSSTTBCCHHHHHHHHHH---CSSCEEEEECCCC--HHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHH-HHcCCCEEEEEecCCCCCCCCHHHHHHHHHh---hCCCCEEEeccCc--hHHHHHHHHhccchheecc-
Confidence 5666654544 3555 48888532 13567766554432 2234555555543 3456667778899999999
Q ss_pred CCCcHHHHHHHHH-CCCeEeecc--C-------------------------------------hhchHHHHHHhhCCCCC
Q 022271 96 GEYSEELVLEAHS-AGVKVVPQD--G-------------------------------------LISLLPMVVDLIGDRDI 135 (300)
Q Consensus 96 G~~~~~~v~~~~~-~G~~v~~~~--~-------------------------------------~~~ll~~v~~~~~~~~i 135 (300)
|..+++.++.+++ .|+.++... . .+.+++.+.. +.
T Consensus 100 G~E~~~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~~fDW~~~~~~~~-----~~ 174 (228)
T 4aaj_A 100 SNALPQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGKLHDLRVSSLVAR-----KI 174 (228)
T ss_dssp SCCCHHHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-------CCCHHHHHHHH-----HS
T ss_pred cccCHHHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcCcCChHHHHHhhh-----cC
Confidence 5556777887765 477665320 0 1223333322 47
Q ss_pred cEEEccCCCChHHHHHHHH-CCCcEEEecccc
Q 022271 136 PIIAAGGIVDARGYVAALS-LGAQGICLGTRF 166 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~-lGAdgV~~GT~f 166 (300)
|+|.|||| +++-+.+|+. .+..||=+-|.+
T Consensus 175 p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGV 205 (228)
T 4aaj_A 175 PVIVAGGL-NAENVEEVIKVVKPYGVDVSSGV 205 (228)
T ss_dssp CEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred CeEEECCC-CHHHHHHHHHHhCCCEEEeCCCC
Confidence 99999999 6788888887 688888887766
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0097 Score=51.37 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=70.7
Q ss_pred HHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCC---CeEeec----------
Q 022271 54 LIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAG---VKVVPQ---------- 116 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G---~~v~~~---------- 116 (300)
.++++|+.. +.++-..+-..+......+.+.+.|++++.++..... ...++.+++.| ..+..+
T Consensus 48 ~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~ 127 (221)
T 3exr_A 48 LVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQA 127 (221)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHH
T ss_pred HHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHH
Confidence 366666653 5555555555444455566788899999998854322 23444455555 333322
Q ss_pred ---------------------cCh---hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---------------------DGL---ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---------------------~~~---~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+. ..-+..+++... .+.+|.+.||| +.+++..+...|||.+++|+.+..+
T Consensus 128 ~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~-~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~a 202 (221)
T 3exr_A 128 QQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE-MGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEA 202 (221)
T ss_dssp HHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHH-HTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhc-CCceEEEECCC-CHHHHHHHHHCCCCEEEECchhhCC
Confidence 011 112334444431 25789999999 6677888899999999999876654
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0051 Score=58.00 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCCC--------c--------HHHHHHH---HHcC--CcEEEEcCCCCcHHHHHHHH
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAFP--------H--------NENIKAI---LSEK--VAVLQVSWGEYSEELVLEAH 107 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~~--------~--------~~~~~~~---~e~g--~~~i~~~~G~~~~~~v~~~~ 107 (300)
-+.+.++.+|+..+ .|+++.+-.+.. + ...++.+ .+.| ++.|.++-+.....
T Consensus 220 ~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~------ 293 (407)
T 3tjl_A 220 LILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGN------ 293 (407)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETT------
T ss_pred HHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCC------
Confidence 45666778887654 388888876432 1 2345556 5667 88888874431100
Q ss_pred HCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC----CCcEEEeccccccCc
Q 022271 108 SAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL----GAQGICLGTRFVASE 170 (300)
Q Consensus 108 ~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l----GAdgV~~GT~fl~t~ 170 (300)
.-.........+..+++.+ ++|||++|||.+.+++.+++.. +||+|.+|+.|+..+
T Consensus 294 ----~~~~~~~~~~~~~~ir~~~---~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNP 353 (407)
T 3tjl_A 294 ----VDVSEEDQAGDNEFVSKIW---KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNP 353 (407)
T ss_dssp ----EECCGGGCCCCSHHHHHHC---CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCT
T ss_pred ----CcCCccchhHHHHHHHHHh---CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCc
Confidence 0000000123456677776 7899999999998877666654 599999999999874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=52.34 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=37.0
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChH-----HHHHHHHCCCcEEEeccccccCc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDAR-----GYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~-----~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
..+.++++.. ++||+++||+.... .+..++..||+|+.+|+..+-.+
T Consensus 213 e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 213 KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCc
Confidence 3566777665 79999999998542 46677789999999999888764
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0087 Score=57.59 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=56.0
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec--------cccccCcccCCCHHHHHHHHcCCCcce
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG--------TRFVASEESYAHPEYKRKLVEMDKTEY 190 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G--------T~fl~t~Es~~~~~~k~~i~~a~~t~~ 190 (300)
.+.+++++++.+. ++||+ +|+|.+.+++.+++.+|||+|.+| |+++...+++..+.+++....++..++
T Consensus 261 ~~~~i~~l~~~~p--~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~i 337 (491)
T 1zfj_A 261 VLRKIAEIRAHFP--NRTLI-AGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK 337 (491)
T ss_dssp HHHHHHHHHHHCS--SSCEE-EEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC--CCcEe-CCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCC
Confidence 4556777777652 69998 999999999999999999999888 888887777777778777654433333
Q ss_pred EEEec
Q 022271 191 TDVFG 195 (300)
Q Consensus 191 t~~~~ 195 (300)
..+.+
T Consensus 338 pvia~ 342 (491)
T 1zfj_A 338 TIIAD 342 (491)
T ss_dssp EEEEE
T ss_pred CEEee
Confidence 44443
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.022 Score=49.45 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCC-------CcH---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAF-------PHN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~-------~~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
+.+.+.++|+.+++..+. .-++++... ..+ ...+.+.+.|+++|-++.|-.+. .|
T Consensus 110 ~~~~v~~ei~~v~~a~~~-~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~--------~g------ 174 (231)
T 3ndo_A 110 DLDAVSADITAVRKAVRA-ATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPS--------GG------ 174 (231)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTT--------CS------
T ss_pred cHHHHHHHHHHHHHHccC-CceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCC--------CC------
Confidence 567888889998887642 234655532 111 23456668899999887653210 01
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.++.-+..+++.+. .+++|-++|||.|.+++.+++.+||+-
T Consensus 175 -At~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~R 215 (231)
T 3ndo_A 175 -ASVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATR 215 (231)
T ss_dssp -CCHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred -CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchh
Confidence 12222223333333 279999999999999999999999994
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0084 Score=52.93 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=57.5
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.+...+.|+..++. .+....+..+++.+ ++||+.-++|.|..++..++.+|||+|.+|+..+-
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v---~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~ 140 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV---DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG 140 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhc---CCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH
Confidence 356777777888887765 25677888999887 89999999999999999999999999999999875
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.12 Score=49.14 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=91.7
Q ss_pred CCCcHHHHHHHHhCC--ceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANAG--GLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+.++.++| .+|++... -+.++++.++.++. ...--|+++.+.+.++..+.+.+.+.++|-++
T Consensus 261 Git~~eda~~a~~~Gad~iGfIf~~~SpR~V~~~~a~~i~~~-----~~v~~VgVFvn~~~~~i~~~~~~~~ld~vQLH- 334 (452)
T 1pii_A 261 GLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAA-----APLQYVGVFRNHDIADVVDKAKVLSLAAVQLH- 334 (452)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHH-----CCCEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHhcCCCEEEeecCCCCCCCCCHHHHHHHHhc-----CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 577776666667666 59998432 24577777765554 13445888988877778888888999999999
Q ss_pred CCCcHHHHHHHHHC---CCeEeecc---C--------------------------hhchHHHHHHhhCCCCCcEEEccCC
Q 022271 96 GEYSEELVLEAHSA---GVKVVPQD---G--------------------------LISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 96 G~~~~~~v~~~~~~---G~~v~~~~---~--------------------------~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
|..+.++++.+++. ++.++... . .+++++. . .+.|++.|||+
T Consensus 335 G~E~~~~~~~l~~~~p~~~~iika~~v~~~~~~~~~~~~d~~LlD~~~GGtG~~fdW~~l~~---~---~~~p~iLAGGL 408 (452)
T 1pii_A 335 GNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNG---Q---SLGNVLLAGGL 408 (452)
T ss_dssp SCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGTT---S---CCTTEEEESSC
T ss_pred CCCCHHHHHHHHhhccCCCcEEEEEecCCccchhhhhcccEEEecCCCCCCCCccCHHHhhc---c---cCCcEEEEcCC
Confidence 55567888887652 55555320 0 1222221 1 15799999999
Q ss_pred CChHHHHHHHHCCCcEEEeccccc
Q 022271 144 VDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+++-+..++..+..||=+-|.+=
T Consensus 409 -~p~NV~~ai~~~p~gvDvsSGVE 431 (452)
T 1pii_A 409 -GADNCVEAAQTGCAGLDFNSAVE 431 (452)
T ss_dssp -CTTTHHHHHTTCCSEEEECGGGE
T ss_pred -CHHHHHHHHhcCCCEEEeCCcee
Confidence 66778777888999888876654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.01 Score=54.24 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=80.5
Q ss_pred cccC--CccceecCCCCCCCCc------HHHHHHHHhCCceEEecCCCCCCHHHHH-----HHHHHHHhh-cCCcEEeee
Q 022271 5 GMLG--FEYGIVQAPLGPDISG------PELVAAVANAGGLGLLRAPDWEAPDYLR-----DLIRKTRSL-TERPFGVGV 70 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~------~~la~avs~aGglG~i~~~~~~~~~~l~-----~~i~~~r~~-~~~P~gvnl 70 (300)
+++| ++.|++.+||+ +.+. ..|+.++.++|..-.++. +.+. ++ ...+ +|.. .+.|+..|+
T Consensus 51 ~i~g~~l~~P~~iapm~-g~~~~~~~~~~~la~~a~~~G~~~~~~~--~~~~--le~~~~~~~~q-l~~~~~d~pv~~~~ 124 (332)
T 1vcf_A 51 PFLGKTLKAPFLIGAMT-GGEENGERINLALAEAAEALGVGMMLGS--GRIL--LERPEALRSFR-VRKVAPKALLIANL 124 (332)
T ss_dssp EETTEEESSSEEECCCC----CCHHHHHHHHHHHHHHHTCEEEEEE--CHHH--HHCTTTHHHHC-CTTTCSSSCEEEEE
T ss_pred EECCcccCCceEEeccc-cCCcchhHHHHHHHHHHHHcCCCEEeCC--chhc--ccCCCccceEE-eeccCCCceeeccc
Confidence 4566 67899999998 5553 388999999996544443 2111 21 1111 2332 477887776
Q ss_pred ecCC---C-cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCC---
Q 022271 71 VLAF---P-HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGI--- 143 (300)
Q Consensus 71 ~~~~---~-~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI--- 143 (300)
-... . .+...+.+...+++.+.++... ..+++ . .|-..+ ...+..+.++++ + ++||++=+ |
T Consensus 125 ~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~-~~~~~---~-~~~~~~--~~~~~~i~~vr~-~---~~Pv~vK~-v~~g 192 (332)
T 1vcf_A 125 GLAQLRRYGRDDLLRLVEMLEADALAFHVNP-LQEAV---Q-RGDTDF--RGLVERLAELLP-L---PFPVMVKE-VGHG 192 (332)
T ss_dssp EGGGGGTCCHHHHHHHHHHHTCSEEEEECCH-HHHHH---T-TSCCCC--TTHHHHHHHHCS-C---SSCEEEEC-SSSC
T ss_pred ChhhhhccChHHHHHHHhhcCCCceeeccch-HHHHh---c-CCCccH--HHHHHHHHHHHc-C---CCCEEEEe-cCCC
Confidence 5321 1 2333333334467777666432 22222 1 121111 123445555555 4 79999864 5
Q ss_pred CChHHHHHHHHCCCcEEEec
Q 022271 144 VDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~G 163 (300)
.+.+++..+..+|+|+|.+.
T Consensus 193 ~~~e~a~~~~~~G~d~I~vs 212 (332)
T 1vcf_A 193 LSREAALALRDLPLAAVDVA 212 (332)
T ss_dssp CCHHHHHHHTTSCCSEEECC
T ss_pred CCHHHHHHHHHcCCCEEEeC
Confidence 78999998889999999993
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.023 Score=50.66 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=55.9
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
|.++.....+.|...+.. .+.+..+.++++.+ ++||+.-..|.|..++..+..+|||+|.+++..+
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v---~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQAC---SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTS---SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhc---CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 466777777788766654 25677889999887 8999999999999999999999999999999877
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.072 Score=48.15 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=30.2
Q ss_pred CCc-EEEccCCCCh----HHHHHHHHCCCcEEEeccccccC
Q 022271 134 DIP-IIAAGGIVDA----RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iP-ViaaGGI~~g----~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+| |+++||+ +. +.+..++..||+||.+|+.....
T Consensus 221 ~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 221 NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 799 9999999 55 34888889999999999988765
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.068 Score=48.15 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhcCC-cEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLTER-PFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~~~-P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.... ++.|-. .+.+.++.+++.|+++|-++-.. + +.+ .++++.
T Consensus 195 i~~ai~~~r~~~~~~kI~vev----~tlee~~eA~~aGaD~I~ld~~~-~-e~l--------------------~~~v~~ 248 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEVEV----ENLDELDDALKAGADIIMLDNFN-T-DQM--------------------REAVKR 248 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEEEE----SSHHHHHHHHHTTCSEEEESSCC-H-HHH--------------------HHHHHT
T ss_pred HHHHHHHHHHhCCCCcEEEEe----CCHHHHHHHHHcCCCEEEECCCC-H-HHH--------------------HHHHHH
Confidence 45667777776432 333322 23355666678888888876432 2 222 233333
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
++. ++||.++||| |.+.+.+....|+|++-+|+.
T Consensus 249 ~~~-~~~I~ASGGI-t~~~i~~~a~~GvD~isvGsl 282 (296)
T 1qap_A 249 VNG-QARLEVSGNV-TAETLREFAETGVDFISVGAL 282 (296)
T ss_dssp TCT-TCCEEECCCS-CHHHHHHHHHTTCSEEECSHH
T ss_pred hCC-CCeEEEECCC-CHHHHHHHHHcCCCEEEEeHH
Confidence 322 6899999999 999999999999999999984
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.024 Score=50.45 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=54.8
Q ss_pred cHHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++.....+.|+..+.. .|.+..+.++++.+ ++||+.-+.|.|..++..+..+|||+|.+|...+-
T Consensus 74 p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v---~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~ 147 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASV---SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE 147 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred HHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhC---CCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence 455666666777776654 24577888898887 89999999999999999999999999999988664
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.034 Score=51.45 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhc-CCcEEeeeecCCC--------c----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 50 YLRDLIRKTRSLT-ERPFGVGVVLAFP--------H----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~-~~P~gvnl~~~~~--------~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
-+.+.++++|+.. +.+++|.+..... . ...++.+.+.+++.+.++.|..+.. . ..
T Consensus 204 f~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-----------~~ 271 (358)
T 4a3u_A 204 LLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGT-F-----------GK 271 (358)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCS-S-----------SB
T ss_pred HHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCc-c-----------cc
Confidence 3556777888764 3457777655321 1 1234556677888888876643110 0 00
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+.+++++.. .+||+ .||+.|++.+.++|.-| ||.|.||+.|++-++
T Consensus 272 ~~~~~~a~~ik~~~---~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPd 323 (358)
T 4a3u_A 272 TDQPKLSPEIRKVF---KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIGNPD 323 (358)
T ss_dssp CSSCCCHHHHHHHC---CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHHCTT
T ss_pred cccHHHHHHHHHhc---CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHhChh
Confidence 11234667777775 56665 67888999999999998 999999999998754
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=52.04 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHCCCeEeec---c-ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 98 YSEELVLEAHSAGVKVVPQ---D-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~---~-~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.|.++.+..++.|..-++. . .....+.++.+.+ ++||...|||.+- ++.+++ +||+-|.+||..+-.
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~~n~~~i~~i~~~~---~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~ 109 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGPNNDDAAREALQES---PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFTK 109 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESSSCHHHHHHHHHHS---TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBCT
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCHHHHHHHHhcC---CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHhh
Confidence 3677778887776554432 2 2456777887776 7999999999986 999999 999999999998865
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.053 Score=48.27 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.++++|+... +++++-. .+.+.++.+++.|+++|-+.... + +.++++. ..+...
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev----~tlee~~~A~~aGaD~I~ld~~~-~-~~l~~~v----------------~~l~~~ 226 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIEC----ESFEEAKNAMNAGADIVMCDNLS-V-LETKEIA----------------AYRDAH 226 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEE----SSHHHHHHHHHHTCSEEEEETCC-H-HHHHHHH----------------HHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEc----CCHHHHHHHHHcCCCEEEECCCC-H-HHHHHHH----------------HHhhcc
Confidence 566777777643 3455422 12355666677889998876432 2 2333211 112221
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
. .++||.++||| |.+.+.+++..|||++-+|+...
T Consensus 227 ~--~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 227 Y--PFVLLEASGNI-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp C--TTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred C--CCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 1 25999999999 99999999999999999999744
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.017 Score=56.69 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=49.3
Q ss_pred cHHHHHHHHHCCCeEeec---cC----------hhchHHHHHHhhCCCCCcEEEccCCCChHH-----------HHHHHH
Q 022271 99 SEELVLEAHSAGVKVVPQ---DG----------LISLLPMVVDLIGDRDIPIIAAGGIVDARG-----------YVAALS 154 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~~----------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-----------v~aal~ 154 (300)
|.++.+...+.|..-++. .+ .+.++.++++.+ ++||++.|||.+.+| +.+++.
T Consensus 282 p~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~---~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~ 358 (555)
T 1jvn_A 282 PVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 358 (555)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC---CCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence 456667777777654432 11 244555555554 899999999999855 999999
Q ss_pred CCCcEEEecccccc
Q 022271 155 LGAQGICLGTRFVA 168 (300)
Q Consensus 155 lGAdgV~~GT~fl~ 168 (300)
+|||.|.+||..+.
T Consensus 359 aGad~V~igt~~~~ 372 (555)
T 1jvn_A 359 SGADKVSIGTDAVY 372 (555)
T ss_dssp HTCSEEEECHHHHH
T ss_pred cCCCEEEECCHHhh
Confidence 99999999999864
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.23 Score=44.37 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=60.1
Q ss_pred HHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.++++|+.. +++++|-. .+.+.++.+++.|+++|.+.- ...+.++ ++++.
T Consensus 183 ~~av~~ar~~~~~~~~IgVev----~t~eea~eA~~aGaD~I~ld~--~~~~~~k--------------------~av~~ 236 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEVEV----RSLEELEEALEAGADLILLDN--FPLEALR--------------------EAVRR 236 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEEEE----SSHHHHHHHHHHTCSEEEEES--CCHHHHH--------------------HHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEe----CCHHHHHHHHHcCCCEEEECC--CCHHHHH--------------------HHHHH
Confidence 44577777753 25677633 235667777788888888763 2222222 23333
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++. ++|+.++||| +.+.+.+....|+|+|.+|+....
T Consensus 237 v~~-~ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~~~ 273 (286)
T 1x1o_A 237 VGG-RVPLEASGNM-TLERAKAAAEAGVDYVSVGALTHS 273 (286)
T ss_dssp HTT-SSCEEEESSC-CHHHHHHHHHHTCSEEECTHHHHS
T ss_pred hCC-CCeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHHcC
Confidence 322 6899999999 589999999999999999875443
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.15 Score=44.32 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhc---CCcEEeeeecCC--Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 50 YLRDLIRKTRSLT---ERPFGVGVVLAF--PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 50 ~l~~~i~~~r~~~---~~P~gvnl~~~~--~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
.+.++|.++++.. +.|+ +++... .. ....+.+.+.|+++|=++.|-.+. .| .+.
T Consensus 117 ~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~~~--------~g-------At~ 179 (234)
T 1n7k_A 117 AVYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTK--------GG-------DPV 179 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSCC--------CC-------SHH
T ss_pred HHHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC--------CC-------CCH
Confidence 6677777777653 2454 333321 12 224566677888888777542110 00 011
Q ss_pred chHHH--HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc--EEEec
Q 022271 121 SLLPM--VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ--GICLG 163 (300)
Q Consensus 121 ~ll~~--v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd--gV~~G 163 (300)
.-+.. +++.+ ++||.++|||.+.+++.+++.+||+ |+-.|
T Consensus 180 ~dv~l~~m~~~v---~v~VKaaGGirt~~~al~~i~aGa~RiG~S~g 223 (234)
T 1n7k_A 180 TVFRLASLAKPL---GMGVKASGGIRSGIDAVLAVGAGADIIGTSSA 223 (234)
T ss_dssp HHHHHHHHHGGG---TCEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred HHHHHHHHHHHH---CCCEEEecCCCCHHHHHHHHHcCccccchHHH
Confidence 11112 44445 3899999999999999999999999 55443
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.21 Score=43.55 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=67.5
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcCCCC---cHHHHHHHHHCCC---eEeec--------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGV---KVVPQ-------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~G~~---~~~~v~~~~~~G~---~v~~~-------- 116 (300)
.++.+|+. +..++=++++ ..|+ ...++.+.+.|++.|+++.-.. ....++.+++.|. .++..
T Consensus 57 ~v~~lr~~~~~v~lD~kl~-Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~ 135 (245)
T 1eix_A 57 FVRELQQRGFDIFLDLKFH-DIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEA 135 (245)
T ss_dssp HHHHHHHTTCCEEEEEEEC-SCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCH
T ss_pred HHHHHHHCCCcEEEEeecc-ccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCH
Confidence 45666665 3445555555 2222 2467788889999999875221 1244445555554 22211
Q ss_pred --------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChH----------HHHHHHH
Q 022271 117 --------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----------GYVAALS 154 (300)
Q Consensus 117 --------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~----------~v~aal~ 154 (300)
.+... +.++++... +.+++..|||.... .+..++.
T Consensus 136 ~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~--~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~ 212 (245)
T 1eix_A 136 SDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE-AVRFKQVFG--QEFKLVTPGIRPQGSEAGDQRRIMTPEQALS 212 (245)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG-HHHHHHHHC--SSSEEEECCBCCTTCCCTTCCSCBCHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCHHH-HHHHHHhcC--CCCEEEECCcCCCCCCccchhccCCHHHHHH
Confidence 01112 344444442 36899999998531 4778889
Q ss_pred CCCcEEEeccccccC
Q 022271 155 LGAQGICLGTRFVAS 169 (300)
Q Consensus 155 lGAdgV~~GT~fl~t 169 (300)
.|||.+++|+....+
T Consensus 213 aGad~iVvGr~I~~a 227 (245)
T 1eix_A 213 AGVDYMVIGRPVTQS 227 (245)
T ss_dssp TTCSEEEECHHHHTS
T ss_pred cCCCEEEECHHHcCC
Confidence 999999999887764
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.052 Score=48.99 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 52 RDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 52 ~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
.+.++++|+... +++.+..- +.+.++.+++.|+++|-++... + +.+.++ +..+...
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev~----tlee~~~A~~aGaD~I~ld~~~-~-~~l~~~----------------v~~l~~~ 241 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVECS----SLQEAVQAAEAGADLVLLDNFK-P-EELHPT----------------ATVLKAQ 241 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEES----SHHHHHHHHHTTCSEEEEESCC-H-HHHHHH----------------HHHHHHH
T ss_pred HHHHHHHHHhCCcCCeEEEecC----CHHHHHHHHHcCCCEEEECCCC-H-HHHHHH----------------HHHhhcc
Confidence 456777776543 34554332 2355666677889988876433 2 223221 1112111
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
. .++||.++||| |.+.+.+....|+|++.+|+..
T Consensus 242 ~--~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i 275 (299)
T 2jbm_A 242 F--PSVAVEASGGI-TLDNLPQFCGPHIDVISMGMLT 275 (299)
T ss_dssp C--TTSEEEEESSC-CTTTHHHHCCTTCCEEECTHHH
T ss_pred C--CCeeEEEECCC-CHHHHHHHHHCCCCEEEEChhh
Confidence 1 25899999999 9999999999999999999843
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.66 Score=40.14 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=82.9
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHH
Q 022271 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILS 85 (300)
Q Consensus 7 lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e 85 (300)
||.+.=++|.-|. ++...+.+.|.+.++-. .+++...+..+.+-+. +--.+-+....+. .+.++.+.+
T Consensus 13 ~~~~~~~~~~~m~------~~~~~l~~~~vv~Vir~---~~~~~a~~~a~al~~g--Gi~~iEvt~~t~~a~e~I~~l~~ 81 (232)
T 4e38_A 13 LGTENLYFQSMMS------TINNQLKALKVIPVIAI---DNAEDIIPLGKVLAEN--GLPAAEITFRSDAAVEAIRLLRQ 81 (232)
T ss_dssp -------CCCCHH------HHHHHHHHHCEEEEECC---SSGGGHHHHHHHHHHT--TCCEEEEETTSTTHHHHHHHHHH
T ss_pred cCchhhHHHHHHH------HHHHHHHhCCEEEEEEc---CCHHHHHHHHHHHHHC--CCCEEEEeCCCCCHHHHHHHHHH
Confidence 3444445554442 35555666677777754 3566555555554432 1123444443333 344555554
Q ss_pred cCCcEEEEcCCC-CcHHHHHHHHHCCCeEeeccCh-hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 86 EKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQDGL-ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 86 ~g~~~i~~~~G~-~~~~~v~~~~~~G~~v~~~~~~-~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.-++.+ +..|. ...+.++.+.++|...++..++ ..++....+. ++|++. |+.|+.++.+|+.+|||.|-+
T Consensus 82 ~~~~~~-iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~----gi~~ip--Gv~TptEi~~A~~~Gad~vK~- 153 (232)
T 4e38_A 82 AQPEML-IGAGTILNGEQALAAKEAGATFVVSPGFNPNTVRACQEI----GIDIVP--GVNNPSTVEAALEMGLTTLKF- 153 (232)
T ss_dssp HCTTCE-EEEECCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHH----TCEEEC--EECSHHHHHHHHHTTCCEEEE-
T ss_pred hCCCCE-EeECCcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHc----CCCEEc--CCCCHHHHHHHHHcCCCEEEE-
Confidence 323322 22232 2345566666778777765332 2233333332 789888 699999999999999999976
Q ss_pred cccccCcccCCCHHHHHHHHcC
Q 022271 164 TRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 164 T~fl~t~Es~~~~~~k~~i~~a 185 (300)
|-+ +...-..|-+.+...
T Consensus 154 --FPa--~~~gG~~~lkal~~p 171 (232)
T 4e38_A 154 --FPA--EASGGISMVKSLVGP 171 (232)
T ss_dssp --CST--TTTTHHHHHHHHHTT
T ss_pred --CcC--ccccCHHHHHHHHHH
Confidence 443 222124555566553
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.089 Score=47.34 Aligned_cols=89 Identities=8% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcC--CcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~~--~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+... +++.+..- +.+.++.+++.|+++|-++...| +.+. ++++
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev~----tlee~~~A~~aGaD~I~ld~~~~--~~l~--------------------~~v~ 238 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVECL----SEDEATEAIEAGADVIMLDNFKG--DGLK--------------------MCAQ 238 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECS----SSHHHHHHHHHTCSEEECCC---------------------------------
T ss_pred HHHHHHHHHHhcCcCCeEEEecC----CHHHHHHHHHcCCCEEEECCCCH--HHHH--------------------HHHH
Confidence 4556777777643 34444221 12446666678888887754321 1122 1222
Q ss_pred hhCC-----CCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 129 LIGD-----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 129 ~~~~-----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
.+++ .++||.++||| |.+.+.+....|+|++-+|+..
T Consensus 239 ~l~~~~~g~~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 239 SLKNKWNGKKHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp ----------CCEEEEECCC-CC------CCCSCSEEECGGGT
T ss_pred HhcccccCCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEechh
Confidence 2211 14899999999 9999999999999999999984
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.086 Score=47.07 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCC---CcH----HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhch
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAF---PHN----ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISL 122 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~---~~~----~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~l 122 (300)
.+.++|+++++.... .-++++... .++ ...+.+.+.|+++|=++.|-.+. |. +.....+
T Consensus 142 ~v~~eI~~v~~a~~~-~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~~~---------gA----T~edv~l 207 (281)
T 2a4a_A 142 EATKLTQSVKKLLTN-KILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQI---------NA----TPSSVEY 207 (281)
T ss_dssp HHHHHHHHHHTTCTT-SEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSSC---------CC----CHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCC---------CC----CHHHHHH
Confidence 778888888887542 335555532 122 34577788999999887543210 00 0001222
Q ss_pred HHHHHHhh------CCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 123 LPMVVDLI------GDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 123 l~~v~~~~------~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.++++.. .+.+++|-++|||.|.+++.+++.+||+
T Consensus 208 m~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 208 IIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 33333211 0237999999999999999999998876
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.17 Score=46.61 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=85.5
Q ss_pred cccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecC---------CC-----------------C--CCHHHHHHH
Q 022271 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---------PD-----------------W--EAPDYLRDL 54 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---------~~-----------------~--~~~~~l~~~ 54 (300)
+++| ++.||+.|.=. .-.+.+.......+| +|++-. ++ + ...+.+.+.
T Consensus 40 ~~~Gl~~~NPv~lAAG~-~~~~~e~~~~l~~~G-~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~ 117 (354)
T 4ef8_A 40 NLLNNTFANPFMNAAGV-MCTTTEELVAMTESA-SGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAY 117 (354)
T ss_dssp EETTEEESSSEEECTTS-SCSSHHHHHHHHHSS-CSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHH
T ss_pred EECCEECCCCCEeccCC-CCCCHHHHHHHHHcC-CCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHH
Confidence 3445 58899986632 235788888888877 555411 11 1 124555555
Q ss_pred HHHHHhhcCCcEEeeeecCCCc--HHHHHHHH---HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--cChhchHHHHH
Q 022271 55 IRKTRSLTERPFGVGVVLAFPH--NENIKAIL---SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ--DGLISLLPMVV 127 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~~~--~~~~~~~~---e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~--~~~~~ll~~v~ 127 (300)
+++.++..+.|+++|+....+. .+.++.+. +.+++.|.++++||-.+ |..-+.. ..+..++..++
T Consensus 118 l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~--------gg~~l~~~~e~~~~il~av~ 189 (354)
T 4ef8_A 118 AAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP--------GKPQVAYDFDAMRQCLTAVS 189 (354)
T ss_dssp HHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST--------TSCCGGGSHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC--------CchhhccCHHHHHHHHHHHH
Confidence 5554444578999999875432 34455555 46899999999997431 2222211 12345666666
Q ss_pred HhhCCCCCcEEEccCCC-ChHHHHHHH----HCC-CcEEEec
Q 022271 128 DLIGDRDIPIIAAGGIV-DARGYVAAL----SLG-AQGICLG 163 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~-~g~~v~aal----~lG-AdgV~~G 163 (300)
+++ ++||++=-... |..++.++. ..| +|+|.+-
T Consensus 190 ~~~---~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~ 228 (354)
T 4ef8_A 190 EVY---PHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCI 228 (354)
T ss_dssp HHC---CSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred Hhh---CCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 665 68887643322 444443333 466 9999863
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.18 Score=46.60 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=49.7
Q ss_pred cCCCCcHHHHHHHHHCCCeEeec---cC----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 94 SWGEYSEELVLEAHSAGVKVVPQ---DG----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 94 ~~G~~~~~~v~~~~~~G~~v~~~---~~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
+.|..+.+.++.+.++|+.+++. .+ .+..+.++++.+ ++||++ |.+.+.+.+..+..+|||+|.+|
T Consensus 101 ~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 101 AIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred EeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 33443467788888999988763 11 234566666665 789887 77899999999999999999996
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.27 Score=45.47 Aligned_cols=84 Identities=26% Similarity=0.189 Sum_probs=56.1
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCc--HHHHHHHHHCCCeEeecc---C----hhchHHHHHHhhCCCCCcEEEccCCCCh
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYS--EELVLEAHSAGVKVVPQD---G----LISLLPMVVDLIGDRDIPIIAAGGIVDA 146 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~--~~~v~~~~~~G~~v~~~~---~----~~~ll~~v~~~~~~~~iPViaaGGI~~g 146 (300)
.++..+.+.+.+. .+....|.++ .+.++++.++|+.++... + ....+..+++... ++||++ |++.|.
T Consensus 77 ~ee~~~~i~~~~~-~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~--~~~Vi~-G~V~T~ 152 (361)
T 3r2g_A 77 IEENIQEFKKCKG-PVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLG--SRCIMA-GNVATY 152 (361)
T ss_dssp HHHHHHHHHTCCS-CCBEEECSSHHHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHT--TCEEEE-EEECSH
T ss_pred HHHHHHHHhhcce-EEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcC--CCeEEE-cCcCCH
Confidence 3555555544432 2223335432 456777788998877541 1 2346666776652 688886 779999
Q ss_pred HHHHHHHHCCCcEEEec
Q 022271 147 RGYVAALSLGAQGICLG 163 (300)
Q Consensus 147 ~~v~aal~lGAdgV~~G 163 (300)
+++..+..+|||+|.+|
T Consensus 153 e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 153 AGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999995
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.61 Score=40.21 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=34.9
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++|+..|||.++.++..+...|+||+.+|++++-++
T Consensus 173 ~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~ 209 (226)
T 1w0m_A 173 EVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAK 209 (226)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred CCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCc
Confidence 6899999999999999999999999999999999764
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.65 Score=39.98 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=34.9
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+++|+..|||.++.++..+...|+||+.+|++++-++
T Consensus 176 ~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~ 212 (225)
T 1hg3_A 176 EVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAK 212 (225)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCS
T ss_pred CCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCc
Confidence 6899999999999999999999999999999999764
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.11 Score=45.78 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhhcC-CcEEeeeecCC---CcH----HHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEe
Q 022271 47 APDYLRDLIRKTRSLTE-RPFGVGVVLAF---PHN----ENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVV 114 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~-~P~gvnl~~~~---~~~----~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~ 114 (300)
+.+.+.++|+++++... .+.-++++... .++ ...+.+.+.|+++|=++.|-. ..+.+
T Consensus 115 ~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~~~gAt~e~v----------- 183 (260)
T 1p1x_A 115 NEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESA----------- 183 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHH-----------
T ss_pred CHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-----------
Confidence 44677788888877642 12234555432 122 345677788888887774431 11212
Q ss_pred eccChhchHHHHHHhh-CCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 115 PQDGLISLLPMVVDLI-GDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 115 ~~~~~~~ll~~v~~~~-~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
.++.++.+.. .+.+++|-++|||.|.+++.+++.+||+
T Consensus 184 ------~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 184 ------RIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp ------HHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 1333332211 0237999999999999999999999876
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=92.40 E-value=2.8 Score=37.53 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=29.5
Q ss_pred hhchHHHHHHhhCCCCCcEEEc-----------cCCCCh------HHHHHHHHCCCcEEEecccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAA-----------GGIVDA------RGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaa-----------GGI~~g------~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.+..+|.+++ + ++||+.. ||-+.| .-..+|.++||||+++=+.|--
T Consensus 203 dl~~i~~lk~-~---~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~tp 265 (298)
T 3fs2_A 203 DMRALPIMAG-L---GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHEDP 265 (298)
T ss_dssp CTTHHHHHHT-T---TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEESSG
T ss_pred CHHHHHHHHH-c---CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecCCh
Confidence 3667888877 5 7999882 333344 2245889999999999666543
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.28 E-value=1.2 Score=39.77 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=59.2
Q ss_pred HHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+. ..+|+.|-. .+.+.++.+++.|+++|-+.-. ++ +.+++ +++.
T Consensus 185 i~~Av~~ar~~~~~~~IeVEv----~tl~ea~eAl~aGaD~I~LDn~-~~-~~l~~--------------------av~~ 238 (287)
T 3tqv_A 185 IAKAVTKAKKLDSNKVVEVEV----TNLDELNQAIAAKADIVMLDNF-SG-EDIDI--------------------AVSI 238 (287)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE----SSHHHHHHHHHTTCSEEEEESC-CH-HHHHH--------------------HHHH
T ss_pred HHHHHHHHHhhCCCCcEEEEe----CCHHHHHHHHHcCCCEEEEcCC-CH-HHHHH--------------------HHHh
Confidence 55667777765 235555522 2456777788889999988632 22 22332 2233
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
++. ++++.++||| +.+.+.++...|+|.+-+|+-
T Consensus 239 ~~~-~v~ieaSGGI-t~~~i~~~a~tGVD~IsvGal 272 (287)
T 3tqv_A 239 ARG-KVALEVSGNI-DRNSIVAIAKTGVDFISVGAI 272 (287)
T ss_dssp HTT-TCEEEEESSC-CTTTHHHHHTTTCSEEECSHH
T ss_pred hcC-CceEEEECCC-CHHHHHHHHHcCCCEEEEChh
Confidence 322 6899999999 788899999999999999964
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.76 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=28.1
Q ss_pred CcEEEccCCCCh-H---------HHHHHHHCCCcEEEeccccccC
Q 022271 135 IPIIAAGGIVDA-R---------GYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 135 iPViaaGGI~~g-~---------~v~aal~lGAdgV~~GT~fl~t 169 (300)
.+++..|||... . .+..++..|||.+++|+..+.+
T Consensus 177 ~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a 221 (246)
T 2yyu_A 177 SFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRA 221 (246)
T ss_dssp TSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTS
T ss_pred CCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCC
Confidence 459999999743 2 3778889999999999887765
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.35 Score=43.21 Aligned_cols=116 Identities=18% Similarity=0.051 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecCCC---cHH----HHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEeec
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLAFP---HNE----NIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~~~---~~~----~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~~~ 116 (300)
.+.+.++|+++++... +.-++++.... +++ ..+.+.+.|+++|-+|.|-. ..+.+..+++.=-.....
T Consensus 134 ~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~~~gAT~edV~lM~~~v~~~~~~ 212 (297)
T 4eiv_A 134 ESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVR 212 (297)
T ss_dssp HHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 4678888889988764 45678777542 233 45677789999998876632 112222211100000000
Q ss_pred cChhchHHHHHHh-hCCCCCcEEEc-cCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 117 DGLISLLPMVVDL-IGDRDIPIIAA-GGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 117 ~~~~~ll~~v~~~-~~~~~iPViaa-GGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
...-..+.-+... ..+.++-|=++ |||.|.+++.+++.+..+ +|..|+
T Consensus 213 ~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e---lG~~wl 262 (297)
T 4eiv_A 213 ENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE---NGPRSI 262 (297)
T ss_dssp ------------------CCEEEEECTTCCHHHHHHHHHHHHHH---HCGGGC
T ss_pred ccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH---hCcccc
Confidence 0000000000000 00136889999 999999999999996555 666555
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=91.87 E-value=1.4 Score=39.89 Aligned_cols=87 Identities=15% Similarity=0.233 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+|+.|-+ .+.+.++.+++.|+++|-+.-.. + +.++ ++++.
T Consensus 218 i~~Av~~ar~~~p~~kIeVEV----dtldea~eAl~aGaD~I~LDn~~-~-~~l~--------------------~av~~ 271 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEVET----ETLAELEEAISAGADIIMLDNFS-L-EMMR--------------------EAVKI 271 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEEEE----SSHHHHHHHHHTTCSEEEEESCC-H-HHHH--------------------HHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEE----CCHHHHHHHHHcCCCEEEECCCC-H-HHHH--------------------HHHHH
Confidence 445666676653 34444422 23456777778888888886432 2 2233 23333
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
++. ++++.++||| |.+.+.+....|+|.+.+|+.
T Consensus 272 l~~-~v~ieaSGGI-t~~~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 272 NAG-RAALENSGNI-TLDNLKECAETGVDYISVGAL 305 (320)
T ss_dssp HTT-SSEEEEESSC-CHHHHHHHHTTTCSEEECTHH
T ss_pred hCC-CCeEEEECCC-CHHHHHHHHHcCCCEEEECce
Confidence 322 6999999999 688899999999999999983
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.58 E-value=5.9 Score=33.78 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=81.5
Q ss_pred CCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCC-c
Q 022271 22 ISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEY-S 99 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~-~ 99 (300)
.+..++...+.+.+.+.++-. .+++.+.+.++++-+.. -+ .+.+....+. .+.++.+.+.-++++. ..|.+ .
T Consensus 5 ~~~~~~~~~l~~~~ii~vir~---~~~~~~~~~~~al~~gG-v~-~iel~~k~~~~~~~i~~l~~~~~~l~v-gaGtvl~ 78 (224)
T 1vhc_A 5 YTTQQIIEKLRELKIVPVIAL---DNADDILPLADTLAKNG-LS-VAEITFRSEAAADAIRLLRANRPDFLI-AAGTVLT 78 (224)
T ss_dssp CCHHHHHHHHHHHCEEEEECC---SSGGGHHHHHHHHHHTT-CC-EEEEETTSTTHHHHHHHHHHHCTTCEE-EEESCCS
T ss_pred cchHHHHHHHHHCCeEEEEeC---CCHHHHHHHHHHHHHcC-CC-EEEEeccCchHHHHHHHHHHhCcCcEE-eeCcEee
Confidence 455566666777777777653 35555555555543321 11 2333332222 3445544443334332 22332 2
Q ss_pred HHHHHHHHHCCCeEeeccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHH
Q 022271 100 EELVLEAHSAGVKVVPQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 178 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~ 178 (300)
.+-++.+.++|...++..+ ...++...++ . ++|++. |+.|..++.+++.+|||.|.+ |- .+......+
T Consensus 79 ~d~~~~A~~aGAd~v~~p~~d~~v~~~ar~-~---g~~~i~--Gv~t~~e~~~A~~~Gad~vk~---Fp--a~~~gG~~~ 147 (224)
T 1vhc_A 79 AEQVVLAKSSGADFVVTPGLNPKIVKLCQD-L---NFPITP--GVNNPMAIEIALEMGISAVKF---FP--AEASGGVKM 147 (224)
T ss_dssp HHHHHHHHHHTCSEEECSSCCHHHHHHHHH-T---TCCEEC--EECSHHHHHHHHHTTCCEEEE---TT--TTTTTHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHH-h---CCCEEe--ccCCHHHHHHHHHCCCCEEEE---ee--CccccCHHH
Confidence 4556666677777766432 2233444444 3 677776 499999999999999999998 43 232223555
Q ss_pred HHHHHcCC
Q 022271 179 KRKLVEMD 186 (300)
Q Consensus 179 k~~i~~a~ 186 (300)
-+.+...-
T Consensus 148 lk~l~~~~ 155 (224)
T 1vhc_A 148 IKALLGPY 155 (224)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhhC
Confidence 56666543
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=91.46 E-value=0.53 Score=42.66 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=79.3
Q ss_pred ccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC---------CC------------------CCHHHHHHHHH
Q 022271 6 MLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP---------DW------------------EAPDYLRDLIR 56 (300)
Q Consensus 6 ~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~---------~~------------------~~~~~l~~~i~ 56 (300)
++| ++.||+.+++. ..+.++..+.++.| +|++..+ +. .+...+++.++
T Consensus 49 i~g~~l~npi~~aag~--~~~~~~~~~~a~~G-~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~ 125 (336)
T 1f76_A 49 CMGLTFKNPLGLAAGL--DKDGECIDALGAMG-FGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVE 125 (336)
T ss_dssp ETTEEESSSEEECTTS--STTCCCHHHHHHTT-CSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHH
T ss_pred ECCEEcCCCcEeCccc--CCcHHHHHHHHHcC-ccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHH
Confidence 445 56899998642 34456777777765 6654111 00 00011234444
Q ss_pred HHHhh-cCCcEEeeeecCCC------cHHHHHHHH--HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cChhchHHHH
Q 022271 57 KTRSL-TERPFGVGVVLAFP------HNENIKAIL--SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DGLISLLPMV 126 (300)
Q Consensus 57 ~~r~~-~~~P~gvnl~~~~~------~~~~~~~~~--e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~~~~ll~~v 126 (300)
.+++. .+.|+++|+..+.. .++..+.+. +.+++.|.+++++|... |...... .-+..++..|
T Consensus 126 ~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~--------g~~~~~~~~~~~~il~~v 197 (336)
T 1f76_A 126 NVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP--------GLRTLQYGEALDDLLTAI 197 (336)
T ss_dssp HHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST--------TGGGGGSHHHHHHHHHHH
T ss_pred HHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC--------CcccccCHHHHHHHHHHH
Confidence 45443 35699999987641 123333222 24799999999886311 1110100 1133455666
Q ss_pred HHhhC------CCCCcEEEc--cCCC--ChHH-HHHHHHCCCcEEEecccc
Q 022271 127 VDLIG------DRDIPIIAA--GGIV--DARG-YVAALSLGAQGICLGTRF 166 (300)
Q Consensus 127 ~~~~~------~~~iPViaa--GGI~--~g~~-v~aal~lGAdgV~~GT~f 166 (300)
++.+. +.++||++= .++. +... +..+...|+|+|.+....
T Consensus 198 r~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 198 KNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred HHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCc
Confidence 65541 125888763 3332 1122 345556999999986543
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=1.3 Score=39.43 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. ..++.|-+. ..+.++.+++.|+++|.+.-- .|. .+.+. +..+...
T Consensus 181 i~~av~~ar~~~~~~~I~Vev~----t~eea~eal~aGaD~I~LDn~-~~~-~~~~~----------------v~~l~~~ 238 (284)
T 1qpo_A 181 VVDALRAVRNAAPDLPCEVEVD----SLEQLDAVLPEKPELILLDNF-AVW-QTQTA----------------VQRRDSR 238 (284)
T ss_dssp HHHHHHHHHHHCTTSCEEEEES----SHHHHHHHGGGCCSEEEEETC-CHH-HHHHH----------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEeC----CHHHHHHHHHcCCCEEEECCC-CHH-HHHHH----------------HHHhhcc
Confidence 455677777653 225555333 357778888889999888742 232 23221 1122222
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
. .++++.++||| +.+.+.++...|+|.+.+|+..-
T Consensus 239 ~--~~v~ieaSGGI-t~~~i~~~a~tGVD~isvG~l~~ 273 (284)
T 1qpo_A 239 A--PTVMLESSGGL-SLQTAATYAETGVDYLAVGALTH 273 (284)
T ss_dssp C--TTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTS
T ss_pred C--CCeEEEEECCC-CHHHHHHHHhcCCCEEEECHHHc
Confidence 1 26899999999 78899999999999999998543
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.69 Score=42.43 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=83.9
Q ss_pred cccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecCCC--------------------------C--CCHHHHHHH
Q 022271 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDL 54 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~~~l~~~ 54 (300)
+++| ++.||+.|.= ..-.+.+....+...| +|++-... + ...+.+.+.
T Consensus 41 ~~~Gl~~~NPv~lAaG-~~~~~~e~~~~~~~~G-~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~ 118 (345)
T 3oix_A 41 TIGSFDFDNCLMNAAG-VYCMTREELAAIDHSE-AGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDY 118 (345)
T ss_dssp EETTEEESCSEEECTT-SSCSSHHHHHHHHTSS-CSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHH
T ss_pred EECCEECCCCCEEcCC-CCCCCHHHHHHHHHcC-CCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHH
Confidence 3445 5889998742 1124678888888877 66653211 1 123555555
Q ss_pred HHHH-HhhcCCcEEeeeecCCCc--HHHHHHHHHcCCc-EEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhh
Q 022271 55 IRKT-RSLTERPFGVGVVLAFPH--NENIKAILSEKVA-VLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLI 130 (300)
Q Consensus 55 i~~~-r~~~~~P~gvnl~~~~~~--~~~~~~~~e~g~~-~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~ 130 (300)
+++. ++..+.|+++|+....+. .+.++.+.+.+.+ .|.++++||-.+ |...+. .....+.++.+++
T Consensus 119 l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~--------G~~~l~--~~~e~l~~il~av 188 (345)
T 3oix_A 119 VTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP--------GXPQIA--YDFETTDQILSEV 188 (345)
T ss_dssp HHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST--------TCCCGG--GCHHHHHHHHHHH
T ss_pred HHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC--------Cchhhc--CCHHHHHHHHHHH
Confidence 5553 234678999999875432 3445666667877 999999997421 322111 1223445555544
Q ss_pred CC-CCCcEEE--ccCCCChHHHHHHHH-CCCcEEE
Q 022271 131 GD-RDIPIIA--AGGIVDARGYVAALS-LGAQGIC 161 (300)
Q Consensus 131 ~~-~~iPVia--aGGI~~g~~v~aal~-lGAdgV~ 161 (300)
++ .++||++ .-+ .+..++++++. +||+++.
T Consensus 189 ~~~~~~PV~vKi~p~-~~~~~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 189 FTYFTKPLGIKLPPY-FDIVHFDQAAAIFNXYPLT 222 (345)
T ss_dssp TTTCCSCEEEEECCC-CCHHHHHHHHHHHTTSCCS
T ss_pred HHHhCCCeEEEECCC-CCHHHHHHHHHHhCCCceE
Confidence 32 2678764 333 36666665554 7888775
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.72 Score=41.40 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+|+-|= ..+.+.++.+++.|+++|-+.-.. +.+ +++ +++.
T Consensus 196 i~~Av~~~r~~~p~~~ieVE----vdtlde~~eAl~aGaD~I~LDn~~-~~~-l~~--------------------av~~ 249 (298)
T 3gnn_A 196 VGEALDAAFALNAEVPVQIE----VETLDQLRTALAHGARSVLLDNFT-LDM-MRD--------------------AVRV 249 (298)
T ss_dssp HHHHHHHHHHHC--CCCEEE----ESSHHHHHHHHHTTCEEEEEESCC-HHH-HHH--------------------HHHH
T ss_pred HHHHHHHHHHhCCCCCEEEE----eCCHHHHHHHHHcCCCEEEECCCC-HHH-HHH--------------------HHHH
Confidence 445666666652 2333322 223456777778888888886443 222 322 2222
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
+. .++++.++||| |.+.+.++...|+|++-+|+.
T Consensus 250 i~-~~v~ieaSGGI-~~~~i~~~a~tGVD~isvG~l 283 (298)
T 3gnn_A 250 TE-GRAVLEVSGGV-NFDTVRAIAETGVDRISIGAL 283 (298)
T ss_dssp HT-TSEEEEEESSC-STTTHHHHHHTTCSEEECGGG
T ss_pred hC-CCCeEEEEcCC-CHHHHHHHHHcCCCEEEECCe
Confidence 22 26899999999 778889999999999999983
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.62 Score=37.78 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=54.5
Q ss_pred HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHH
Q 022271 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 82 ~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~ 154 (300)
.+...|.+++.+....|++++++.+++.+..++.. ...+..++++.+.+++ .++||+++|-+. .++...+-.
T Consensus 41 ~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~-~~~~~~l~~ 119 (161)
T 2yxb_A 41 ALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIP-IPDLEPLRS 119 (161)
T ss_dssp HHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCC-HHHHHHHHH
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hhcHHHHHH
Confidence 34457888887765567788888888887777653 2345556666655532 268888877654 456666678
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
.|+|++.-
T Consensus 120 ~G~d~v~~ 127 (161)
T 2yxb_A 120 LGIREIFL 127 (161)
T ss_dssp TTCCEEEC
T ss_pred CCCcEEEC
Confidence 99998774
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=91.08 E-value=0.42 Score=42.69 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+.+.++++|+.. +++++|-. .+.+.++.+++.|+++|.+.-- .+ +.++++ +..+..
T Consensus 179 i~~av~~ar~~~~~~~~I~VEV----~tleea~eA~~aGaD~I~LDn~-~~-e~l~~a----------------v~~l~~ 236 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVEV----ENLEDALRAVEAGADIVMLDNL-SP-EEVKDI----------------SRRIKD 236 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE----SSHHHHHHHHHTTCSEEEEESC-CH-HHHHHH----------------HHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEe----CCHHHHHHHHHcCCCEEEECCC-CH-HHHHHH----------------HHHhhc
Confidence 455677777763 25666632 2357777788889999888632 22 223321 111222
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.. .++|+.++||| +.+.+.++...|+|++.+|+...
T Consensus 237 ~~--~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 237 IN--PNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp HC--TTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTS
T ss_pred cC--CCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHc
Confidence 11 26899999999 67889999999999999998544
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=90.99 E-value=0.59 Score=43.25 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCeEeecc---C----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQD---G----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~---~----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.+++.. + .+..+.++++... ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 110 ~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p--~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 110 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcC--CCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 577888889999887631 1 2344556666542 678766 77999999999999999999995
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=2.4 Score=39.34 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=85.1
Q ss_pred cceecCCCCCCCCcH----HHHHHHHhCCceEEecCC--------CC--CCHHHHHHHHHHHHhhcCCcEEeeeecCC--
Q 022271 11 YGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAP--------DW--EAPDYLRDLIRKTRSLTERPFGVGVVLAF-- 74 (300)
Q Consensus 11 ~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~--------~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-- 74 (300)
.++|.||.+ +-+. +++.++.++|.--+.... .| ...+.+ +.+.++++..+.||..-.+-..
T Consensus 143 ~~~Iigpcs--ves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl-~~L~~~~~~~Gl~~~te~~d~~~~ 219 (385)
T 3nvt_A 143 PVFVFGPCS--VESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGL-KILKRVSDEYGLGVISEIVTPADI 219 (385)
T ss_dssp CEEEEECSB--CCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHH-HHHHHHHHHHTCEEEEECCSGGGH
T ss_pred eEEEEEeCC--cCCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHH-HHHHHHHHHcCCEEEEecCCHHHH
Confidence 357777875 5554 666777888865443221 01 234444 4555666556667655443211
Q ss_pred -----------------CcHHHHHHHHHcCCcEEEEcCC-CCcHHH---HHHHHHCCC---eEeec-cC----------h
Q 022271 75 -----------------PHNENIKAILSEKVAVLQVSWG-EYSEEL---VLEAHSAGV---KVVPQ-DG----------L 119 (300)
Q Consensus 75 -----------------~~~~~~~~~~e~g~~~i~~~~G-~~~~~~---v~~~~~~G~---~v~~~-~~----------~ 119 (300)
.+.+.++.+.+.+.+++..... ..+.++ ++.+...|. .+.+. .+ .
T Consensus 220 ~~l~~~vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ld 299 (385)
T 3nvt_A 220 EVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLD 299 (385)
T ss_dssp HHHTTTCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCC
T ss_pred HHHHhhCCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccC
Confidence 1246677777777777765522 223333 344455553 23331 11 2
Q ss_pred hchHHHHHHhhCCCCCcEEEc----cCCCCh--HHHHHHHHCCCcEEEeccccc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAA----GGIVDA--RGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaa----GGI~~g--~~v~aal~lGAdgV~~GT~fl 167 (300)
+..+|.+++.. ++||+.. +|-.+- .-..+|.++||+|+++=+.|-
T Consensus 300 l~~i~~lk~~~---~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~ 350 (385)
T 3nvt_A 300 ISAVPILKKET---HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPD 350 (385)
T ss_dssp TTHHHHHHHHB---SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSC
T ss_pred HHHHHHHHHhc---CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 45588888776 7999765 221111 234578899999999976554
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.15 Score=47.70 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+++.+ ++|||++|||.+..++++.+. -+||.|.||+.||+-++ +-+++.+
T Consensus 313 ir~~~---~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPd------l~~k~~~ 363 (400)
T 4gbu_A 313 VYSIW---KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPD------LVDRLEK 363 (400)
T ss_dssp HHHHC---CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTT------HHHHHHH
T ss_pred HHHHh---CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcH------HHHHHHc
Confidence 44444 799999999998888777665 47999999999998754 4455554
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=90.42 E-value=1.3 Score=39.68 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+|+-| .....+.++.+++.|+++|-+.- ..| +.+++ +++.
T Consensus 194 i~~Av~~ar~~~p~~kIeV----Ev~tl~e~~eAl~aGaDiImLDn-~s~-~~l~~--------------------av~~ 247 (300)
T 3l0g_A 194 ITLAIQRLRKNLKNEYIAI----ECDNISQVEESLSNNVDMILLDN-MSI-SEIKK--------------------AVDI 247 (300)
T ss_dssp HHHHHHHHHHHSSSCCEEE----EESSHHHHHHHHHTTCSEEEEES-CCH-HHHHH--------------------HHHH
T ss_pred HHHHHHHHHHhCCCCCEEE----EECCHHHHHHHHHcCCCEEEECC-CCH-HHHHH--------------------HHHh
Confidence 456677777652 344433 22345778888888999998863 223 33332 2223
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+++ ++.+.++||| +.+.+.++...|+|.+.+|+-.
T Consensus 248 ~~~-~v~leaSGGI-t~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 248 VNG-KSVLEVSGCV-NIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp HTT-SSEEEEESSC-CTTTHHHHHTTTCSEEECGGGT
T ss_pred hcC-ceEEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 322 6899999999 7788999999999999999643
|
| >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A | Back alignment and structure |
|---|
Probab=90.30 E-value=2.2 Score=43.15 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhc-CCcE-EeeeecCCCc---HHHHH-HHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cC
Q 022271 49 DYLRDLIRKTRSLT-ERPF-GVGVVLAFPH---NENIK-AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DG 118 (300)
Q Consensus 49 ~~l~~~i~~~r~~~-~~P~-gvnl~~~~~~---~~~~~-~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~ 118 (300)
+.+++.++...+.. .+|. -+..+..+.+ ...+. .+...|.+++....-.|++++++.+++.+..++.. ..
T Consensus 588 e~lr~~~~~~~~~~g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~ 667 (762)
T 2xij_A 588 TSAIKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAG 667 (762)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeecHH
Confidence 45555555543322 3443 2222222222 34444 33467999998765567899999999999888764 33
Q ss_pred hhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCCcEEEe-cc
Q 022271 119 LISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGICL-GT 164 (300)
Q Consensus 119 ~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGAdgV~~-GT 164 (300)
...+++++.+.+++ .+++|++ ||+.-..+...+..+|+|++.- ||
T Consensus 668 ~~~~~~~vi~~Lr~~G~~dv~Viv-GG~~P~~d~~~l~~~GaD~~f~pgt 716 (762)
T 2xij_A 668 HKTLVPELIKELNSLGRPDILVMC-GGVIPPQDYEFLFEVGVSNVFGPGT 716 (762)
T ss_dssp HHHHHHHHHHHHHHTTCTTSEEEE-EESCCGGGHHHHHHHTCCEEECTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEE-eCCCCcccHHHHHhCCCCEEeCCCC
Confidence 56678888877642 2566655 5544454777788899999876 55
|
| >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.35 Score=38.14 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=39.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhC--C-CCCcEEEccCCCC-hHH----HHHH
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIG--D-RDIPIIAAGGIVD-ARG----YVAA 152 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~--~-~~iPViaaGGI~~-g~~----v~aa 152 (300)
..|.+++.+....|++++++.+++.+..++.. ......++++.+.++ + .+++|+.+|.... ..+ ...+
T Consensus 29 ~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~ 108 (137)
T 1ccw_A 29 NAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRF 108 (137)
T ss_dssp HTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHH
T ss_pred HCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHH
Confidence 34555555443344555555555544444432 112222333333321 1 2688988887532 233 3347
Q ss_pred HHCCCcEEE
Q 022271 153 LSLGAQGIC 161 (300)
Q Consensus 153 l~lGAdgV~ 161 (300)
..+|+|++.
T Consensus 109 ~~~G~d~~~ 117 (137)
T 1ccw_A 109 KDMGYDRVY 117 (137)
T ss_dssp HHTTCSEEC
T ss_pred HHCCCCEEE
Confidence 789999886
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.59 Score=39.21 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCc-EEEccCCCChHHHHHHHHCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIP-IIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iP-ViaaGGI~~g~~v~aal~lG 156 (300)
+.++.+.+.|++.|.+....+. .+..+.++.+.. ++| ++.+|++.+.+++..++.+|
T Consensus 23 ~~~~~~~~~G~~~i~l~~~~~~-------------------~~~~i~~i~~~~---~~~l~vg~g~~~~~~~i~~a~~~G 80 (212)
T 2v82_A 23 AHVGAVIDAGFDAVEIPLNSPQ-------------------WEQSIPAIVDAY---GDKALIGAGTVLKPEQVDALARMG 80 (212)
T ss_dssp HHHHHHHHHTCCEEEEETTSTT-------------------HHHHHHHHHHHH---TTTSEEEEECCCSHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEEeCCChh-------------------HHHHHHHHHHhC---CCCeEEEeccccCHHHHHHHHHcC
Confidence 4455666667777766543321 123445555554 455 45678999999999999999
Q ss_pred CcEEEecc
Q 022271 157 AQGICLGT 164 (300)
Q Consensus 157 AdgV~~GT 164 (300)
||+|.+|+
T Consensus 81 ad~V~~~~ 88 (212)
T 2v82_A 81 CQLIVTPN 88 (212)
T ss_dssp CCEEECSS
T ss_pred CCEEEeCC
Confidence 99998775
|
| >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=2.3 Score=42.79 Aligned_cols=116 Identities=23% Similarity=0.200 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhc-CCcE-EeeeecCCCc---HHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----c
Q 022271 48 PDYLRDLIRKTRSLT-ERPF-GVGVVLAFPH---NENIKAI-LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----D 117 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~-~~P~-gvnl~~~~~~---~~~~~~~-~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~ 117 (300)
.+.|+..++...+.. .+|. -+-.+..+.+ ...+..+ ...|.+++....-.|++++++.+++.+.+++.. .
T Consensus 579 fe~Lr~~~~~~~~~~g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~ 658 (727)
T 1req_A 579 VEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAG 658 (727)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecH
Confidence 355665555554332 3443 2222222222 3444433 457999988765567899999999999888765 2
Q ss_pred ChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCCcEEEe-cc
Q 022271 118 GLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGICL-GT 164 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGAdgV~~-GT 164 (300)
..+.+++++.+.+++ .+++|++.|.+- ..+...+...|+|++.- ||
T Consensus 659 ~~~~~~~~vi~~L~~~G~~~i~VivGG~~p-~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 659 GHLTLVPALRKELDKLGRPDILITVGGVIP-EQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSEEEEEESCC-GGGHHHHHHTTEEEEECTTC
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEcCCCc-cccHHHHHhCCCCEEEcCCc
Confidence 356677888777642 256766655444 44777788899999876 54
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=88.84 E-value=0.74 Score=44.29 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++.. ...+..+.++++... ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p--~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCC--CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 46677777889887764 124567777777652 688887 88999999999999999999986
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.94 Score=43.48 Aligned_cols=61 Identities=31% Similarity=0.397 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++.. ...+..+.++++... ++||++ |.+.+.+++.++..+|||+|.+|
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p--~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFP--DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCT--TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCC--CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 45666777888887753 124466777777652 688877 77999999999999999999985
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.43 Score=44.69 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCeEeec---cCh----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQ---DGL----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~---~~~----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++.. .+. ...+.++++.. ++||++ |++.+.+.+..+..+|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 46777788889888753 221 33444444443 688886 78999999999999999999996
|
| >2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=88.23 E-value=1.6 Score=38.00 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=54.6
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC--CCCcEEEccCCCChHHHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~--~~iPViaaGGI~~g~~v~aal~ 154 (300)
..+...|.+++.+....|++++++.+++.+..++.. ..++..++++.+.+++ .++||++.|.+.+. +.++ .
T Consensus 145 ~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~~-~~~~--~ 221 (258)
T 2i2x_B 145 ALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGAVNQ-DFVS--Q 221 (258)
T ss_dssp HHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTTCCH-HHHH--T
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECccCCH-HHHH--H
Confidence 344568999998877788899999988877776653 3345566776666532 36999999988884 4433 6
Q ss_pred CCCcEE
Q 022271 155 LGAQGI 160 (300)
Q Consensus 155 lGAdgV 160 (300)
.|||+.
T Consensus 222 igad~~ 227 (258)
T 2i2x_B 222 FALGVY 227 (258)
T ss_dssp STTEEE
T ss_pred cCCeEE
Confidence 788754
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.19 E-value=3.3 Score=36.52 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCc----HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHH----HHCCCeEeecc
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPH----NENIKAILSEKVAVLQVSW--GEY--SEELVLEA----HSAGVKVVPQD 117 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~----~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~----~~~G~~v~~~~ 117 (300)
.+.+..++.|+...+.|-.=++.-+|+ .+.++.+.+.|+|+|.+.. ..| ..++|++. -++|..+ .
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~---~ 82 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTP---D 82 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCH---H
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCH---H
Confidence 455666666665455554344445564 4567888889999999853 222 12345443 2466332 2
Q ss_pred ChhchHHHHHHh-hCCCCCcEEEccCCCC-------hHHHHHHHHCCCcEEEec
Q 022271 118 GLISLLPMVVDL-IGDRDIPIIAAGGIVD-------ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 118 ~~~~ll~~v~~~-~~~~~iPViaaGGI~~-------g~~v~aal~lGAdgV~~G 163 (300)
..+.++.++++. . ++||+.-+ ..+ .+=+..+...|+||+.+-
T Consensus 83 ~~~~~v~~~r~~~~---~~Pivlm~-Y~n~v~~~g~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 83 ICFELIAQIRARNP---ETPIGLLM-YANLVYARGIDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp HHHHHHHHHHHHCT---TSCEEEEE-CHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHhcCC---CCCEEEEe-cCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence 357788888876 4 79998864 222 223667778999999885
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=87.99 E-value=2.3 Score=37.45 Aligned_cols=107 Identities=14% Similarity=0.199 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCc----HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHHH----HCCCeEeecc
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPH----NENIKAILSEKVAVLQVSW--GEY--SEELVLEAH----SAGVKVVPQD 117 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~----~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~~----~~G~~v~~~~ 117 (300)
.+.+..++.|+...+.+.-=++..+|+ .+.++.+.+.|+|+|.+.. ..| ..++|+... +.|..+ .
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~---~ 80 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTS---S 80 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCH---H
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCH---H
Confidence 455666666665555564455555664 4668888899999998852 222 124555443 456322 2
Q ss_pred ChhchHHHHHHh-hCCCCCcEEEccCCCCh-------HHHHHHHHCCCcEEEec
Q 022271 118 GLISLLPMVVDL-IGDRDIPIIAAGGIVDA-------RGYVAALSLGAQGICLG 163 (300)
Q Consensus 118 ~~~~ll~~v~~~-~~~~~iPViaaGGI~~g-------~~v~aal~lGAdgV~~G 163 (300)
..+.++.++++. . ++||+.-+ ..++ +=+..+...|+||+.+-
T Consensus 81 ~~~~~v~~ir~~~~---~~Pivlm~-Y~npv~~~g~e~f~~~~~~aGvdgvii~ 130 (267)
T 3vnd_A 81 DCFDIITKVRAQHP---DMPIGLLL-YANLVFANGIDEFYTKAQAAGVDSVLIA 130 (267)
T ss_dssp HHHHHHHHHHHHCT---TCCEEEEE-CHHHHHHHCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHhcCC---CCCEEEEe-cCcHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 357788888776 4 79998863 4343 23566677999999985
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=14 Score=32.75 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=88.5
Q ss_pred CccccccCCccceecCCCCCC-CCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc---CCcEEe
Q 022271 1 MGWRGMLGFEYGIVQAPLGPD-ISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT---ERPFGV 68 (300)
Q Consensus 1 ~~~~~~lg~~~Pii~apM~~g-~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~---~~P~gv 68 (300)
|+.+++-|+ +|-+.-||.-| +.. .+++.-..++|.=|++.+|. .++.++-++.++.+.+.. +.|+-+
T Consensus 4 m~~~~~~Gv-~~a~vTPf~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia 82 (301)
T 3m5v_A 4 MDKNIIIGA-MTALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA 82 (301)
T ss_dssp CCCCCCCEE-EEECCCCEETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CcCCcCCce-eEeeecCcCCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 555566666 44444576211 222 36666667788778776542 357788778888777654 347766
Q ss_pred eeecCCCc--HHHHHHHHHcCCcEEEEcC---CCCc-HHHHHHHH----HCCCeEee-----------------------
Q 022271 69 GVVLAFPH--NENIKAILSEKVAVLQVSW---GEYS-EELVLEAH----SAGVKVVP----------------------- 115 (300)
Q Consensus 69 nl~~~~~~--~~~~~~~~e~g~~~i~~~~---G~~~-~~~v~~~~----~~G~~v~~----------------------- 115 (300)
+.-..... .+..+.+.+.|++.+.+.. ..|+ +.+++..+ ..++.++.
T Consensus 83 Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~ 162 (301)
T 3m5v_A 83 GAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDC 162 (301)
T ss_dssp ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcC
Confidence 55433211 3345555666776665421 1111 12222111 12333321
Q ss_pred ------c--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 116 ------Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 116 ------~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. .+.+..+.++++.. .+..| ..|. ...+..++.+|++|++-|+..++.++
T Consensus 163 pnivgiKdssgd~~~~~~~~~~~--~~f~v-~~G~---d~~~~~~l~~G~~G~is~~~n~~P~~ 220 (301)
T 3m5v_A 163 ENIYGVKEASGNIDKCVDLLAHE--PRMML-ISGE---DAINYPILSNGGKGVISVTSNLLPDM 220 (301)
T ss_dssp TTEEEEEECSSCHHHHHHHHHHC--TTSEE-EECC---GGGHHHHHHTTCCEEEESGGGTCHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHHhC--CCeEE-EEcc---HHHHHHHHHcCCCEEEehHHHhhHHH
Confidence 1 12334444555443 14444 3442 34577889999999999998887754
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=87.80 E-value=6.6 Score=33.59 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=39.9
Q ss_pred HHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHH----------HHHHHHCCCcEEEeccccccC
Q 022271 107 HSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG----------YVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 107 ~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~----------v~aal~lGAdgV~~GT~fl~t 169 (300)
.+.|..-+. .+. .-+.++++... +.+++..|||.-... ...++..|||.+++|+..+.+
T Consensus 152 ~~~G~~g~v-~~~-~~i~~lr~~~~--~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a 220 (239)
T 1dbt_A 152 EESGLDGVV-CSV-HEAKAIYQAVS--PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKA 220 (239)
T ss_dssp HHTTCSEEE-CCG-GGHHHHTTTSC--TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTS
T ss_pred HHhCCCEEE-ECH-HHHHHHHHhcC--CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCC
Confidence 445544332 222 45566665542 468999999985433 377889999999999988765
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=87.05 E-value=7.6 Score=32.50 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCeEeeccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 101 ELVLEAHSAGVKVVPQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+.++.+.++|...++... ...++...++ . ++|++. |+.|..++.++..+|||.|.+
T Consensus 74 d~~~~A~~~GAd~v~~~~~d~~v~~~~~~-~---g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 74 KEAEAALEAGAAFLVSPGLLEEVAALAQA-R---GVPYLP--GVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHH-H---TCCEEE--EECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEcCCCCHHHHHHHHH-h---CCCEEe--cCCCHHHHHHHHHCCCCEEEE
Confidence 445555566666665422 2223333332 3 678776 499999999999999999988
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.99 E-value=3.3 Score=38.14 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=85.4
Q ss_pred cccC--CccceecCCCCCCCCc------HHHHHHHHhCCceEEecCCC--CCCHHHHHHHHHHHHhhcCCcEEeeeecCC
Q 022271 5 GMLG--FEYGIVQAPLGPDISG------PELVAAVANAGGLGLLRAPD--WEAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~------~~la~avs~aGglG~i~~~~--~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~ 74 (300)
+++| +++||+.+||+ |.+. ..|+.++.+.|..-.++... ..+|+. ....-.|...+.|+..|+-...
T Consensus 79 ~i~g~~l~~Pi~iapMt-gg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~~~~--~~~~v~r~~P~~~~ianig~~~ 155 (365)
T 3sr7_A 79 HFAGQDFDFPFYINAMT-GGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDD--TSYQVKKSRPHLLLATNIGLDK 155 (365)
T ss_dssp EETTEEESSSEEEECC-----CCCHHHHHHHHHHHHHHTCCEEC-------------------------CCEEEEEETTS
T ss_pred EECCEEccCceEecccc-CCCcchhHHHHHHHHHHHHcCCCeecccccccccCccc--cceEehhhCCCCcEEEEeCCCC
Confidence 3455 57799999998 5554 35999989988766555421 113432 1111122235678878887665
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCC---CChHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGI---VDARGYVA 151 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI---~~g~~v~a 151 (300)
+.++..+.+.+.+++.+.++.. +..+.+ +..|-.-+ ...+..+.++++.+ ++||++-+ + .+.+++..
T Consensus 156 ~~e~~~~~ve~~~adal~ihln-~~qe~~---~p~Gd~~~--~~~~~~I~~l~~~~---~~PVivK~-vg~g~s~e~A~~ 225 (365)
T 3sr7_A 156 PYQAGLQAVRDLQPLFLQVHIN-LMQELL---MPEGEREF--RSWKKHLSDYAKKL---QLPFILKE-VGFGMDVKTIQT 225 (365)
T ss_dssp CHHHHHHHHHHHCCSCEEEEEC-HHHHHT---SSSSCCCC--HHHHHHHHHHHHHC---CSCEEEEE-CSSCCCHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEecc-cccccc---CCCCCCcH--HHHHHHHHHHHHhh---CCCEEEEE-CCCCCCHHHHHH
Confidence 5556667777889999988754 222222 11221000 02336777888876 79999984 7 68899999
Q ss_pred HHHCCCcEEEec
Q 022271 152 ALSLGAQGICLG 163 (300)
Q Consensus 152 al~lGAdgV~~G 163 (300)
+..+|||+|.++
T Consensus 226 l~~aGad~I~V~ 237 (365)
T 3sr7_A 226 AIDLGVKTVDIS 237 (365)
T ss_dssp HHHHTCCEEECC
T ss_pred HHHcCCCEEEEe
Confidence 999999999994
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=1.2 Score=42.92 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+.++.+.++|+.++.. .+.+.++.++++... ++||+ +|+|.+.+++..+..+|||+|.+|
T Consensus 258 ~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~--~~~vi-~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYP--SLNII-AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCC--CceEE-eeeeccHHHHHHHHHhCCCEEEEC
Confidence 34566677888887754 124567777777652 57777 588999999999999999999984
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=86.10 E-value=3.6 Score=37.39 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=31.4
Q ss_pred hHHHHHHhhCCCCCcEE-EccCCCChHHH----HHHHHCCC--cEEEeccccccC
Q 022271 122 LLPMVVDLIGDRDIPII-AAGGIVDARGY----VAALSLGA--QGICLGTRFVAS 169 (300)
Q Consensus 122 ll~~v~~~~~~~~iPVi-aaGGI~~g~~v----~aal~lGA--dgV~~GT~fl~t 169 (300)
.+.++.++. ++|+| .+||. +.++. ..|+..|| .||.+|+.....
T Consensus 236 ~f~~~~~a~---~~P~v~lsgG~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 236 AFREQEAST---DLPYIYLSAGV-SAELFQETLVFAHKAGAKFNGVLCGRATWAG 286 (332)
T ss_dssp HHHHHHHTC---SSCEEEECTTC-CHHHHHHHHHHHHHHTCCCCEEEECHHHHTT
T ss_pred HHHHHHhcC---CCCEEEECCCC-CHHHHHHHHHHHHHcCCCcceEEeeHHHHHh
Confidence 366666665 79965 79998 45454 45566899 999999876654
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=86.00 E-value=7.9 Score=32.99 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEee--c---cC-----
Q 022271 55 IRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVP--Q---DG----- 118 (300)
Q Consensus 55 i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~--~---~~----- 118 (300)
++++|+..+.++-..+-..+-. ...++.+.+.|++.++++.-... ...++.+++.|..++. . .+
T Consensus 56 v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~ 135 (228)
T 3m47_A 56 IAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFI 135 (228)
T ss_dssp HHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTH
T ss_pred HHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHH
Confidence 4455553344444444433322 34778888899999988742211 2334444444544432 1 00
Q ss_pred -----------------------h-hchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 119 -----------------------L-ISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 119 -----------------------~-~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+ ..-+.++++... .+.+ +..+||+-. .+. .++..|||.+++|+....+
T Consensus 136 ~~~~~~~a~~a~~~G~~GvV~~at~~~e~~~ir~~~~-~~~~-iv~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a 208 (228)
T 3m47_A 136 QGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSF-LISPGVGAQGGDP-GETLRFADAIIVGRSIYLA 208 (228)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCSSCHHHHHHHHHHHC-SSSE-EEECC----------CGGGTCSEEEECHHHHTS
T ss_pred HHHHHHHHHHHHHhCCcEEEECCCChHHHHHHHHhcC-CCCE-EEecCcCcCCCCH-hHHHcCCCEEEECHHHhCC
Confidence 0 112344555442 1244 477888643 246 8888999999999887654
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=85.62 E-value=5.2 Score=31.05 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+..+++|.+.+..|. ..-+.++.++++.-...++|||.--+-.+.++..+++.+|
T Consensus 47 ~~al~~~~~~~~DlillD~~MP~-----------------mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~G 109 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWNMPG-----------------MQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAG 109 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSS-----------------SCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCEEEEcCCCCC-----------------CCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCC
Confidence 44455555555666666555431 2245677777753222379999999999999999999999
Q ss_pred CcEEEe
Q 022271 157 AQGICL 162 (300)
Q Consensus 157 AdgV~~ 162 (300)
|++...
T Consensus 110 a~~yl~ 115 (134)
T 3to5_A 110 VNGYIV 115 (134)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998654
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=85.27 E-value=1.9 Score=37.01 Aligned_cols=63 Identities=25% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE-----ccC---CC--ChHHHHHHHHCCCcEEEeccccccCc
Q 022271 104 LEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA-----AGG---IV--DARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 104 ~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia-----aGG---I~--~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
....+.|+..+- .+....+.++++.+ ++||++ -|| +- +-+++.+++..|||.|.+++.....+
T Consensus 43 ~a~~~~Ga~~i~-~~~~~~i~~ir~~v---~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p 115 (232)
T 3igs_A 43 LAAEQAGAVAVR-IEGIDNLRMTRSLV---SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRP 115 (232)
T ss_dssp HHHHHTTCSEEE-EESHHHHHHHHTTC---CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCS
T ss_pred HHHHHCCCeEEE-ECCHHHHHHHHHhc---CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCH
Confidence 333445554433 23456667788776 799975 144 33 34688999999999999998765443
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=12 Score=33.74 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHH---------HCCCeEeec-cChhchHHHHHHhhCCCCCcEEEc-------
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAH---------SAGVKVVPQ-DGLISLLPMVVDLIGDRDIPIIAA------- 140 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~---------~~G~~v~~~-~~~~~ll~~v~~~~~~~~iPViaa------- 140 (300)
+.++.+.+.|.+.|.+++++. .++.++- +.|..+... .-.+.++..|++++ +.||..=
T Consensus 148 ~aA~~a~~aGfDgVeih~~~g--yLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v---~~pv~vris~~~~~ 222 (338)
T 1z41_A 148 QAAARAKEAGFDVIEIHAAHG--YLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSASDYT 222 (338)
T ss_dssp HHHHHHHHTTCSEEEEEECTT--SHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCCCS
T ss_pred HHHHHHHHcCCCEEEeccccc--hHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc---CCcEEEEecCcccC
Confidence 345666788999999987652 2333321 123221000 11345666777766 5676542
Q ss_pred -cCCCC--hHHHHHHH-HCCCcEEEecccc
Q 022271 141 -GGIVD--ARGYVAAL-SLGAQGICLGTRF 166 (300)
Q Consensus 141 -GGI~~--g~~v~aal-~lGAdgV~~GT~f 166 (300)
||+.. ...+++.+ ..|+|.+-+..+.
T Consensus 223 ~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~ 252 (338)
T 1z41_A 223 DKGLDIADHIGFAKWMKEQGVDLIDCSSGA 252 (338)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 34432 22344444 4899999986553
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.27 E-value=21 Score=31.45 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=88.5
Q ss_pred cCCccceecCCCCC--CCCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCC
Q 022271 7 LGFEYGIVQAPLGP--DISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAF 74 (300)
Q Consensus 7 lg~~~Pii~apM~~--g~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~ 74 (300)
-|+ +|-+.-||.- .+.. .+++.-..++|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.-...
T Consensus 9 ~Gv-~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~ 87 (297)
T 3flu_A 9 QGS-LVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANN 87 (297)
T ss_dssp CEE-EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSS
T ss_pred Cee-EEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcC
Confidence 344 4444457741 1222 35666667788777775532 357788778888777654 357766654332
Q ss_pred Cc--HHHHHHHHHcCCcEEEEcC---CCCc-HHHHHHHH----HCCCeEeec----------------------------
Q 022271 75 PH--NENIKAILSEKVAVLQVSW---GEYS-EELVLEAH----SAGVKVVPQ---------------------------- 116 (300)
Q Consensus 75 ~~--~~~~~~~~e~g~~~i~~~~---G~~~-~~~v~~~~----~~G~~v~~~---------------------------- 116 (300)
.. .+..+.+.+.|++.+.+.. ..|+ +.+++..+ ..++.++.-
T Consensus 88 t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK 167 (297)
T 3flu_A 88 TVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVK 167 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEE
Confidence 21 3455666677777765431 1121 22222221 234444321
Q ss_pred --cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 --DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 --~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+.+..+.++++... .+..| ..| +...+..++.+|++|++-++..++.++
T Consensus 168 dssgd~~~~~~~~~~~~-~~f~v-~~G---~d~~~l~~l~~G~~G~is~~an~~P~~ 219 (297)
T 3flu_A 168 EASGNIGSNIELINRAP-EGFVV-LSG---DDHTALPFMLCGGHGVITVAANAAPKL 219 (297)
T ss_dssp ECSCCHHHHHHHHHHSC-TTCEE-EEC---CGGGHHHHHHTTCCEEEESGGGTCHHH
T ss_pred eCCCCHHHHHHHHHhcC-CCeEE-EEC---cHHHHHHHHhCCCCEEEechHhhhHHH
Confidence 123444555555542 14444 444 345577899999999999999887654
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=84.16 E-value=23 Score=31.66 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=84.6
Q ss_pred cceecCCCCC--CCCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--
Q 022271 11 YGIVQAPLGP--DISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH-- 76 (300)
Q Consensus 11 ~Pii~apM~~--g~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~-- 76 (300)
+|-+.-||.- .+.. .+++.-..++|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.-.....
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~a 106 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEA 106 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHH
Confidence 3444457741 1222 35666667788778775542 357787777788776653 35765655433211
Q ss_pred HHHHHHHHHcCCcEEEEcC---CCC---------------------------------cHHHHHHHHH-CCCeEeec--c
Q 022271 77 NENIKAILSEKVAVLQVSW---GEY---------------------------------SEELVLEAHS-AGVKVVPQ--D 117 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~---G~~---------------------------------~~~~v~~~~~-~G~~v~~~--~ 117 (300)
.+..+.+.+.|++.+.+.. ..| +.+.+.++.+ ..-.+... .
T Consensus 107 i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss 186 (315)
T 3si9_A 107 VELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDAT 186 (315)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCC
Confidence 2344555566666654321 111 2233333333 22112111 2
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+.+.-+.++++... .+..|+ +| +...+..++.+|++|++-++..++.++
T Consensus 187 gd~~~~~~l~~~~~-~~f~v~-~G---~d~~~l~~l~~G~~G~is~~an~~P~~ 235 (315)
T 3si9_A 187 GKIERASEQREKCG-KDFVQL-SG---DDCTALGFNAHGGVGCISVSSNVAPKL 235 (315)
T ss_dssp CCTHHHHHHHHHHC-SSSEEE-ES---CGGGHHHHHHTTCCEEEESGGGTCHHH
T ss_pred CCHHHHHHHHHHcC-CCeEEE-ec---CHHHHHHHHHcCCCEEEecHHHhhHHH
Confidence 33445555655542 144443 44 344577889999999999998887654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=84.15 E-value=7.4 Score=36.46 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhh-------cCCcEEeeeecCCCc----HHH---HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeE
Q 022271 48 PDYLRDLIRKTRSL-------TERPFGVGVVLAFPH----NEN---IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (300)
Q Consensus 48 ~~~l~~~i~~~r~~-------~~~P~gvnl~~~~~~----~~~---~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v 113 (300)
.+.+.+.+++.++. ...|+++|+..+... +++ ++.+.+. +++|.++.+||-.+ |...
T Consensus 159 ~d~~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~--------Gl~~ 229 (415)
T 3i65_A 159 CDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP--------GLRD 229 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------------
T ss_pred HHHHHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC--------Cccc
Confidence 35555666554432 246899999876521 233 3333333 89999999997432 3332
Q ss_pred eec-cChhchHHHHHHhhC-----------------CCCCc-EEE--ccCCCC--hHHHHH-HHHCCCcEEEeccccc
Q 022271 114 VPQ-DGLISLLPMVVDLIG-----------------DRDIP-IIA--AGGIVD--ARGYVA-ALSLGAQGICLGTRFV 167 (300)
Q Consensus 114 ~~~-~~~~~ll~~v~~~~~-----------------~~~iP-Via--aGGI~~--g~~v~a-al~lGAdgV~~GT~fl 167 (300)
... ..+..++..|+++.+ ..++| |++ +-++.+ -.++++ +...|||||.+-.++.
T Consensus 230 lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 230 NQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 222 224456666666521 01577 543 445542 234444 4568999999876665
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.02 E-value=21 Score=31.09 Aligned_cols=170 Identities=20% Similarity=0.146 Sum_probs=91.0
Q ss_pred CCccceecCCCCCCCCcH----HHHHHHHhCCceEEecCCCCC---C--------HHHHHHHHHHHHhhcCCcEEeeeec
Q 022271 8 GFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWE---A--------PDYLRDLIRKTRSLTERPFGVGVVL 72 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~---~--------~~~l~~~i~~~r~~~~~P~gvnl~~ 72 (300)
|-+ |++-+++. -+-+. +++.++.++|.--+... .|. + .+.+ ++++++++..+.|+..-.+-
T Consensus 21 G~~-~~vIAgpc-~~~~~e~a~~~a~~l~~~Ga~~vk~~-~fkprts~~~~~g~~~egl-~~l~~~~~~~Gl~~~te~~d 96 (262)
T 1zco_A 21 GEG-FTIIAGPC-SIESREQIMKVAEFLAEVGIKVLRGG-AFKPRTSPYSFQGYGEKAL-RWMREAADEYGLVTVTEVMD 96 (262)
T ss_dssp TSS-CEEEEECS-BCCCHHHHHHHHHHHHHTTCCEEECB-SSCCCSSTTSCCCCTHHHH-HHHHHHHHHHTCEEEEECCC
T ss_pred CCC-cEEEEeCC-CCCCHHHHHHHHHHHHHcCCCEEEEE-ecccCCCcccccCccHHHH-HHHHHHHHHcCCcEEEeeCC
Confidence 444 65555544 24443 77778888987544432 121 1 3333 34555555566777554442
Q ss_pred CC-------------------CcHHHHHHHHHcCCcEEEEcCCC-CcHHHHHH---HHHCC---CeEee----cc-----
Q 022271 73 AF-------------------PHNENIKAILSEKVAVLQVSWGE-YSEELVLE---AHSAG---VKVVP----QD----- 117 (300)
Q Consensus 73 ~~-------------------~~~~~~~~~~e~g~~~i~~~~G~-~~~~~v~~---~~~~G---~~v~~----~~----- 117 (300)
.. .+.+.++.+.+.+-+++...... .+.++... ++..| +.+++ ..
T Consensus 97 ~~~~~~l~~~vd~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~ 176 (262)
T 1zco_A 97 TRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATR 176 (262)
T ss_dssp GGGHHHHHHHCSEEEECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSS
T ss_pred HHhHHHHHhhCCEEEECcccccCHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcCh
Confidence 21 12345666666666766654221 23444433 34444 34444 11
Q ss_pred --ChhchHHHHHHhhCCCCCcEEEccCCCChH-----H-HHHHHHCCCcEEEeccccccC------cccCCCHHHHHHHH
Q 022271 118 --GLISLLPMVVDLIGDRDIPIIAAGGIVDAR-----G-YVAALSLGAQGICLGTRFVAS------EESYAHPEYKRKLV 183 (300)
Q Consensus 118 --~~~~ll~~v~~~~~~~~iPViaaGGI~~g~-----~-v~aal~lGAdgV~~GT~fl~t------~Es~~~~~~k~~i~ 183 (300)
-.+..++.+++.. ++||+..-.=++|. . ..++.++||+|+++=+.|-.. ..|-.++.+++.+.
T Consensus 177 ~~v~L~ai~~lk~~~---~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~ 253 (262)
T 1zco_A 177 FTLDISAVPVVKELS---HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLK 253 (262)
T ss_dssp SBCCTTHHHHHHHHB---SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHH
T ss_pred hhcCHHHHHHHHhhh---CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccCChhhcCCCHHHHHHHHH
Confidence 1345778887775 68987644333332 2 456788999999998886422 22233455666554
Q ss_pred c
Q 022271 184 E 184 (300)
Q Consensus 184 ~ 184 (300)
+
T Consensus 254 ~ 254 (262)
T 1zco_A 254 E 254 (262)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=84.01 E-value=0.82 Score=41.59 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcH--HHHHHHHHCC--CeEeec---c----ChhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSE--ELVLEAHSAG--VKVVPQ---D----GLISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~--~~v~~~~~~G--~~v~~~---~----~~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
.+.++.+.+.+..+. ...|..++ +.++.+.+.| ..++.. . ..+..+..+++.. +.|++..|.|.+
T Consensus 84 ~~~i~~~~~~g~~v~-v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~---~~~~vi~G~v~s 159 (336)
T 1ypf_A 84 ISFIRDMQSRGLIAS-ISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHL---PESFVIAGNVGT 159 (336)
T ss_dssp HHHHHHHHHTTCCCE-EEECCSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHC---TTSEEEEEEECS
T ss_pred HHHHHHHHhcCCeEE-EeCCCCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhC---CCCEEEECCcCC
Confidence 445565555665332 22454333 2334455677 555432 1 2345666777765 334555677999
Q ss_pred hHHHHHHHHCCCcEEEec
Q 022271 146 ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~G 163 (300)
.+++.++..+|||+|.++
T Consensus 160 ~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 160 PEAVRELENAGADATKVG 177 (336)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999994
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.99 E-value=11 Score=33.37 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=28.2
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEe
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICL 162 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~ 162 (300)
+.+|.++.+..++ +++|++.|||. ..-+...+. .|++.+=+
T Consensus 196 l~~Lk~Lv~~a~~-rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 196 LPLIKRLIEQAKG-RIVVMPGGGIT-DRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHHHHHHHHHHTT-SSEEEECTTCC-TTTHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhCC-CCEEEECCCcC-HHHHHHHHHhhCCCEEeE
Confidence 4556666665432 69999999995 446666665 88887765
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.59 E-value=24 Score=31.49 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred cCCccceecCCCCC--CCCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCC
Q 022271 7 LGFEYGIVQAPLGP--DISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAF 74 (300)
Q Consensus 7 lg~~~Pii~apM~~--g~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~ 74 (300)
-|+ +|.+.-||.- .+.. .+++.-..++|.=|++.++. .++.++-++.++.+.+.. +.|+-++.-...
T Consensus 26 ~Gv-~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~ 104 (315)
T 3na8_A 26 HGI-IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLT 104 (315)
T ss_dssp CEE-EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSS
T ss_pred Cce-EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC
Confidence 344 4445557741 1222 36666667788778776542 357788778888777653 356656544322
Q ss_pred Cc--HHHHHHHHHcCCcEEEEcC---CCC---------------------------------cHHHHHHH-HHCCCeEee
Q 022271 75 PH--NENIKAILSEKVAVLQVSW---GEY---------------------------------SEELVLEA-HSAGVKVVP 115 (300)
Q Consensus 75 ~~--~~~~~~~~e~g~~~i~~~~---G~~---------------------------------~~~~v~~~-~~~G~~v~~ 115 (300)
.. .+..+.+.+.|++.+.+.. ..| +.+.+.++ .+..-.+..
T Consensus 105 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgi 184 (315)
T 3na8_A 105 TAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMV 184 (315)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEE
Confidence 11 2344555566666665421 011 22344444 332222211
Q ss_pred c--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 116 Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 116 ~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. .+.+..+.++.+...+ +..|+. |. ...+..++.+|++|++-|+..++.++
T Consensus 185 Kdssgd~~~~~~~~~~~~~-~f~v~~-G~---D~~~l~~l~~G~~G~is~~an~~P~~ 237 (315)
T 3na8_A 185 KESTGDIQRMHKLRLLGEG-RVPFYN-GC---NPLALEAFVAGAKGWCSAAPNLIPTL 237 (315)
T ss_dssp EECSSCHHHHHHHHHHTTT-CSCEEE-CC---GGGHHHHHHHTCSEEEESGGGTCHHH
T ss_pred ECCCCCHHHHHHHHHHcCC-CEEEEe-Cc---hHHHHHHHHCCCCEEEechhhhCHHH
Confidence 1 1234445555555431 455554 32 34567889999999999998877654
|
| >1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} | Back alignment and structure |
|---|
Probab=83.52 E-value=3.2 Score=34.72 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=51.5
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAA 152 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aa 152 (300)
..+...|.+++.+....|++++++.+++.+..++.. ...+..++++.+.+++ .++||+..|...+.+ .+
T Consensus 110 ~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~-~~-- 186 (210)
T 1y80_A 110 MMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQD-FA-- 186 (210)
T ss_dssp HHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHH-HH--
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHH-HH--
Confidence 344467999999887788889999888777666653 2233445555544421 249999999988853 33
Q ss_pred HHCCCcEE
Q 022271 153 LSLGAQGI 160 (300)
Q Consensus 153 l~lGAdgV 160 (300)
-..|||+.
T Consensus 187 ~~~gad~~ 194 (210)
T 1y80_A 187 DEIGADGY 194 (210)
T ss_dssp HHHTCSEE
T ss_pred HHcCCeEE
Confidence 44699864
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.41 E-value=2.6 Score=38.79 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=48.1
Q ss_pred HHHHHHHCCCeEeec---cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccC
Q 022271 102 LVLEAHSAGVKVVPQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 169 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~---~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t 169 (300)
+.+.+.+.|+..+.+ ...+..+.++++.+ ++||++.+.+.+.+++..++..| +|.|++....+..
T Consensus 209 ~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~---~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GG 277 (384)
T 2pgw_A 209 MCRKLEKYDIEFIEQPTVSWSIPAMAHVREKV---GIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGG 277 (384)
T ss_dssp HHHHHGGGCCSEEECCSCTTCHHHHHHHHHHC---SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTS
T ss_pred HHHHHHhcCCCEEeCCCChhhHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCC
Confidence 334444556655543 12456677788776 79999999999999999999976 8999997666554
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.26 E-value=8.1 Score=33.57 Aligned_cols=107 Identities=13% Similarity=0.275 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCc----HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHHH----HHCCCeEeeccC
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPH----NENIKAILSEKVAVLQVSW--GEY--SEELVLEA----HSAGVKVVPQDG 118 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~----~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~~----~~~G~~v~~~~~ 118 (300)
+.+..++.|+...+.+-.=++.-+|+ .+.++.+.+.|+|+|.+.. ..| ..++++.. .+.|+.+ ..
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~---~~ 80 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRF---ED 80 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCH---HH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCH---HH
Confidence 34445555544333332223333454 3467788889999998843 111 11344433 3566322 23
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCC-------hHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVD-------ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~-------g~~v~aal~lGAdgV~~G 163 (300)
.+.++.++++.+. ++|++.- +..+ .+.+..+...|+||+.+.
T Consensus 81 ~~~~v~~ir~~~~--~~Pi~~m-~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 81 VLELSETLRKEFP--DIPFLLM-TYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHHHCT--TSCEEEE-CCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHhhcC--CCCEEEE-ecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 5677888877642 5899885 3333 355667888999999985
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=83.23 E-value=5.4 Score=29.30 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=47.6
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
..+.++.+.+..+++|.+....|. ..-+.++.++++.-...++|||+-.+-.+......++..
T Consensus 35 ~~~al~~l~~~~~dlvllD~~~p~-----------------~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~ 97 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXIMMPV-----------------MDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSL 97 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECSCCSS-----------------SCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEeccCCC-----------------CcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhc
Confidence 355566666666777777655431 123456666654321136999999999999999999999
Q ss_pred CCcEEEe
Q 022271 156 GAQGICL 162 (300)
Q Consensus 156 GAdgV~~ 162 (300)
||++...
T Consensus 98 Ga~~~l~ 104 (122)
T 3gl9_A 98 GARKVMR 104 (122)
T ss_dssp TCSEEEE
T ss_pred Chhhhcc
Confidence 9998654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=83.18 E-value=17 Score=29.80 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=67.0
Q ss_pred HHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHc-CCc-EEEEcCCCCcHHHHHHHH
Q 022271 31 VANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSE-KVA-VLQVSWGEYSEELVLEAH 107 (300)
Q Consensus 31 vs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~-g~~-~i~~~~G~~~~~~v~~~~ 107 (300)
+.+.+.+.++.. .+++...+.++.+.+..-.-+-+++- .+. .+.++.+.+. +.+ .|..+.- ...+.++.+.
T Consensus 7 ~~~~~~i~~~~~---~~~~~~~~~~~~~~~~G~~~iev~~~--~~~~~~~i~~ir~~~~~~~~ig~~~v-~~~~~~~~a~ 80 (205)
T 1wa3_A 7 FKKHKIVAVLRA---NSVEEAKEKALAVFEGGVHLIEITFT--VPDADTVIKELSFLKEKGAIIGAGTV-TSVEQCRKAV 80 (205)
T ss_dssp HHHHCEEEEECC---SSHHHHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHTHHHHHTTCEEEEESC-CSHHHHHHHH
T ss_pred HhhCCEEEEEec---CCHHHHHHHHHHHHHCCCCEEEEeCC--ChhHHHHHHHHHHHCCCCcEEEeccc-CCHHHHHHHH
Confidence 455566777653 47787777777776532111222222 222 2334544443 212 2333211 1233456666
Q ss_pred HCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 108 SAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 108 ~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
+.|+..+.. +.+. +++.+..+..++|++. |+.|+.++..++.+|+|.|-+
T Consensus 81 ~~Gad~iv~-~~~~--~~~~~~~~~~g~~vi~--g~~t~~e~~~a~~~Gad~vk~ 130 (205)
T 1wa3_A 81 ESGAEFIVS-PHLD--EEISQFCKEKGVFYMP--GVMTPTELVKAMKLGHTILKL 130 (205)
T ss_dssp HHTCSEEEC-SSCC--HHHHHHHHHHTCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred HcCCCEEEc-CCCC--HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 778777732 2222 2222222112799987 788999999999999999875
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=83.12 E-value=24 Score=31.19 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=45.7
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.+.+|.++.+.+ ++|++.=||=+.+.+ +.+++.+|..-|-++|-+... .....|+.+.+
T Consensus 190 d~~~L~~I~~~~---~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~~a----~~~~~r~~~~~ 249 (286)
T 1gvf_A 190 DFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA----FAGAVKAWFAE 249 (286)
T ss_dssp CHHHHHHHHHHC---CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHHHHH----HHHHHHHHHHh
Confidence 356888998887 799999998876654 889999999999999987655 23455555543
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=83.12 E-value=5 Score=35.97 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=32.3
Q ss_pred hHHHHHHhhCCCCCcEEEccCCC--ChHH----HHHHHH-CCCcEEEecccccc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIV--DARG----YVAALS-LGAQGICLGTRFVA 168 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~--~g~~----v~aal~-lGAdgV~~GT~fl~ 168 (300)
-+.+|.+.. .+||+.+||=. |.++ +..++. .||.|+.+|.-.+-
T Consensus 228 ~f~~Vv~a~---~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 228 EMERVMEST---TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp THHHHGGGC---SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred HHHHHHHhC---CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 346666655 79999999977 4444 446677 69999999987776
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=83.10 E-value=11 Score=34.70 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HHHHhhcCCcEEeeeecCC-------C---cHHHHHHHHHc-CCc--EE-EEcCCCCcH---HHHHHHH
Q 022271 46 EAPDYLRDLI-RKTRSLTERPFGVGVVLAF-------P---HNENIKAILSE-KVA--VL-QVSWGEYSE---ELVLEAH 107 (300)
Q Consensus 46 ~~~~~l~~~i-~~~r~~~~~P~gvnl~~~~-------~---~~~~~~~~~e~-g~~--~i-~~~~G~~~~---~~v~~~~ 107 (300)
.+++++.+.+ ++..+..=+ .+++-... . +.+.++.+.+. +++ +. ..+.+-.+. .+.+.+.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~--~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~ 215 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPA--AVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALE 215 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCS--EEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC--EEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5788887777 666553212 23332221 1 13345555553 443 32 233332223 3456677
Q ss_pred HCCCeEeecc---ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 108 SAGVKVVPQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 108 ~~G~~v~~~~---~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
+.|+..+.+. ..+..+.++++.+ ++||.+...+.+..++..++..|+|.|++--..+
T Consensus 216 ~~~i~~iEqP~~~~d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~~~~ 275 (393)
T 4dwd_A 216 DLGYSWFEEPVQHYHVGAMGEVAQRL---DITVSAGEQTYTLQALKDLILSGVRMVQPDIVKM 275 (393)
T ss_dssp HTTCSEEECCSCTTCHHHHHHHHHHC---SSEEEBCTTCCSHHHHHHHHHHTCCEECCCTTTT
T ss_pred hhCCCEEECCCCcccHHHHHHHHhhC---CCCEEecCCcCCHHHHHHHHHcCCCEEEeCcccc
Confidence 7888887651 2456677788776 7999999999999999999998899999865443
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=83.08 E-value=14 Score=34.18 Aligned_cols=117 Identities=12% Similarity=-0.008 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHc-CCc--EE-EEcCCCCc--HHHHHHHHHCCCeEeecc---C
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE-KVA--VL-QVSWGEYS--EELVLEAHSAGVKVVPQD---G 118 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~-g~~--~i-~~~~G~~~--~~~v~~~~~~G~~v~~~~---~ 118 (300)
++++.+..++..+..=+-|=+++ ....+.+.++.+.+. |++ +. ..+.+-.+ ..+++.+.+.|+..+.+. .
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv-~~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iEqP~~~~ 242 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKI-KPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHEQPLHYE 242 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEC-BTTBSHHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEESCSCTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-CcchHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEeCCCChh
Confidence 88888888777654222233444 222345666666653 343 32 23322222 345556667888877651 2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
.+..+.++++.+ ++||.+..-+.+..++..++..| +|.|++--..+.
T Consensus 243 d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~G 290 (400)
T 3mwc_A 243 ALLDLKELGERI---ETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVG 290 (400)
T ss_dssp CHHHHHHHHHHS---SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred hHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhC
Confidence 356677788776 79999999999999999999986 689988654443
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=83.04 E-value=1.6 Score=42.32 Aligned_cols=55 Identities=15% Similarity=0.354 Sum_probs=48.3
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
|++-+.++.||+.+||. .++.++||.++++.||+|+|+. | +++++-.++++++|+
T Consensus 85 lt~~i~L~iPlvSA~MD-TVTe~~MAIamAr~GGiGvIH~-n-~sie~Qa~~V~~VKr 139 (556)
T 4af0_A 85 ATKNIVLNTPFLSSPMD-TVTEDRMAIALALHGGLGIIHH-N-CSAEEQAAMVRRVKK 139 (556)
T ss_dssp EETTEEESSCEEECCCT-TTCSHHHHHHHHHTTCEEEECC-S-SCHHHHHHHHHHHHH
T ss_pred ccCCcEeCCCEEecCcc-cccCHHHHHHHHHCCCeEEEcC-C-CCHHHHHHHHHHHHh
Confidence 34556678899999999 8999999999999999999997 4 699988889998875
|
| >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=82.79 E-value=2 Score=36.41 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec------cChhchHHHHHHhhCC--C--CCcEEEccCCCChHHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ------DGLISLLPMVVDLIGD--R--DIPIIAAGGIVDARGYV 150 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~------~~~~~ll~~v~~~~~~--~--~iPViaaGGI~~g~~v~ 150 (300)
..+...|.+++.+....|++++++.+++.+..++.. ..++..++++.+.+++ . ++||+..|...+. +.+
T Consensus 114 ~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~-~~a 192 (215)
T 3ezx_A 114 TMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSD-KWI 192 (215)
T ss_dssp HHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCH-HHH
T ss_pred HHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCH-HHH
Confidence 344467999999887788899999998877665543 1233445555555432 2 6899999999885 444
Q ss_pred HHHHCCCcEE
Q 022271 151 AALSLGAQGI 160 (300)
Q Consensus 151 aal~lGAdgV 160 (300)
. ..|||+.
T Consensus 193 ~--~iGad~~ 200 (215)
T 3ezx_A 193 E--EIGADAT 200 (215)
T ss_dssp H--HHTCCBC
T ss_pred H--HhCCeEE
Confidence 3 4588853
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.66 E-value=3.9 Score=36.43 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccC-CCChHHHH---HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGG-IVDARGYV---AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGG-I~~g~~v~---aa 152 (300)
..+++.+++.|++.+.+. |... +... +...--..++..+++.+++ ++|||+.=| .++.+.+. .+
T Consensus 28 ~~lv~~li~~Gv~gl~v~-GttG-E~~~---------Ls~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a 95 (300)
T 3eb2_A 28 GRLCDDLIQAGVHGLTPL-GSTG-EFAY---------LGTAQREAVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLY 95 (300)
T ss_dssp HHHHHHHHHTTCSCBBTT-SGGG-TGGG---------CCHHHHHHHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC-cccc-Cccc---------cCHHHHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHH
Confidence 456777777788777554 3210 0000 0000012455556666543 689887544 34444333 44
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
-.+|||++++-++|.... +...-. |=+.|.++.+.- ..++. .|++.+.-+..+++.++.+
T Consensus 96 ~~~Gadavlv~~P~y~~~~~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 96 EKLGADGILAILEAYFPLKDAQIES-YFRAIADAVEIP-VVIYT---NPQFQRSDLTLDVIARLAE 156 (300)
T ss_dssp HHHTCSEEEEEECCSSCCCHHHHHH-HHHHHHHHCSSC-EEEEE---CTTTCSSCCCHHHHHHHHT
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHH-HHHHHHHHCCCC-EEEEE---CccccCCCCCHHHHHHHHc
Confidence 568999999999998752 111222 334444444433 23454 3666666777777766643
|
| >3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=2.4 Score=41.94 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=53.2
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cC---hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHH
Q 022271 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DG---LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVA 151 (300)
Q Consensus 83 ~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~---~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~a 151 (300)
+...|-+++.+....|++++++.+++.+..++.. .. .+..++++.+.+++ .++||++.|.+.+. +.+
T Consensus 630 LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tq-d~A- 707 (763)
T 3kp1_A 630 IEKYGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTP-EVA- 707 (763)
T ss_dssp GGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCH-HHH-
T ss_pred HHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCH-HHH-
Confidence 3456788887776677888888888888877764 12 35666777776532 24899998888875 433
Q ss_pred HHHCCCcEEE
Q 022271 152 ALSLGAQGIC 161 (300)
Q Consensus 152 al~lGAdgV~ 161 (300)
-.+|||++.
T Consensus 708 -keIGADa~f 716 (763)
T 3kp1_A 708 -VKQGVDAGF 716 (763)
T ss_dssp -HTTTCSEEE
T ss_pred -HHcCCcEEE
Confidence 378999873
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=82.31 E-value=12 Score=33.23 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCC--Cc---HHHHHHHHHCCC---eEeec---------cChhchHHHHHHhhCCCCCcEEE
Q 022271 77 NENIKAILSEKVAVLQVSWGE--YS---EELVLEAHSAGV---KVVPQ---------DGLISLLPMVVDLIGDRDIPIIA 139 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~--~~---~~~v~~~~~~G~---~v~~~---------~~~~~ll~~v~~~~~~~~iPVia 139 (300)
.+.++.+...+-+++... |. .+ ...++.+.+.|- .+.+. .-.+..+|.+++... ++||+.
T Consensus 124 ~~LLr~va~~gkPVilK~-G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~--~~pV~~ 200 (285)
T 3sz8_A 124 TDLVVAIAKAGKPVNVKK-PQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTG--GCPVIF 200 (285)
T ss_dssp HHHHHHHHHTSSCEEEEC-CTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTT--SCCEEE
T ss_pred HHHHHHHHccCCcEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCC--CCCEEE
Confidence 445666666666766554 32 12 345556666653 22221 124667888888751 389988
Q ss_pred c-----------cCCCCh------HHHHHHHHCCCcEEEeccccc
Q 022271 140 A-----------GGIVDA------RGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 140 a-----------GGI~~g------~~v~aal~lGAdgV~~GT~fl 167 (300)
. ||.+.| .-..+|.++||||+++=+.|-
T Consensus 201 D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~ 245 (285)
T 3sz8_A 201 DVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPD 245 (285)
T ss_dssp ETTTTCC---------------HHHHHHHHHHHCCSEEEEEEESC
T ss_pred eCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccC
Confidence 3 333344 234588899999999966654
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.17 E-value=26 Score=30.94 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=84.6
Q ss_pred ccCCccceecCCCCC--CCCc---HHHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecC
Q 022271 6 MLGFEYGIVQAPLGP--DISG---PELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLA 73 (300)
Q Consensus 6 ~lg~~~Pii~apM~~--g~s~---~~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~ 73 (300)
+-|+ +|-+.-||.- .+.. .+++.-..++|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.-..
T Consensus 5 ~~Gv-~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (300)
T 3eb2_A 5 FHGV-FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAST 83 (300)
T ss_dssp CCEE-EEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEES
T ss_pred CCee-EEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 3455 4444457741 1222 35666667788777765532 367888878888777653 35766665443
Q ss_pred CCc--HHHHHHHHHcCCcEEEEcC---CCC---------------------------------cHHHHHHHHHCCCeEee
Q 022271 74 FPH--NENIKAILSEKVAVLQVSW---GEY---------------------------------SEELVLEAHSAGVKVVP 115 (300)
Q Consensus 74 ~~~--~~~~~~~~e~g~~~i~~~~---G~~---------------------------------~~~~v~~~~~~G~~v~~ 115 (300)
... .+..+.+.+.|++.+.+.. ..| +.+.+.++.+..-.+..
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 163 (300)
T 3eb2_A 84 SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYI 163 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEE
Confidence 221 2344555566666654321 111 12333333222111111
Q ss_pred c--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 116 Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 116 ~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
. .+.+..+.++++...+ +..|+. |. ...+..++.+|++|++-|+..++.++
T Consensus 164 Kdssgd~~~~~~~~~~~~~-~f~v~~-G~---d~~~~~~l~~G~~G~is~~an~~P~~ 216 (300)
T 3eb2_A 164 KDASTNTGRLLSIINRCGD-ALQVFS-AS---AHIPAAVMLIGGVGWMAGPACIAPRQ 216 (300)
T ss_dssp EECSSBHHHHHHHHHHHGG-GSEEEE-CT---TSCHHHHHHTTCCEEEEGGGGTCHHH
T ss_pred EcCCCCHHHHHHHHHHcCC-CeEEEe-Cc---HHHHHHHHhCCCCEEEeChhhhhHHH
Confidence 1 1234445555554421 344443 32 23467889999999999998877654
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=82.15 E-value=5.7 Score=34.64 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhcCCcEEeeeecCCCc----HHHHHHHHHcCCcEEEEcC--CCC--cHHHHHH----HHHCCCeEeeccC
Q 022271 51 LRDLIRKTRSLTERPFGVGVVLAFPH----NENIKAILSEKVAVLQVSW--GEY--SEELVLE----AHSAGVKVVPQDG 118 (300)
Q Consensus 51 l~~~i~~~r~~~~~P~gvnl~~~~~~----~~~~~~~~e~g~~~i~~~~--G~~--~~~~v~~----~~~~G~~v~~~~~ 118 (300)
+.+..++.|+...+.+..=++..+|+ .+.++.+.+.|+++|.+.. ..| ..++++. ..+.|+.+ ..
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~---~~ 80 (268)
T 1qop_A 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTP---AQ 80 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCH---HH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCH---HH
Confidence 44445555544344443344444553 3467788889999998753 222 1123432 33456321 12
Q ss_pred hhchHHHHHHh-hCCCCCcEEEccCCCC-------hHHHHHHHHCCCcEEEec
Q 022271 119 LISLLPMVVDL-IGDRDIPIIAAGGIVD-------ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 119 ~~~ll~~v~~~-~~~~~iPViaaGGI~~-------g~~v~aal~lGAdgV~~G 163 (300)
.+.++.++++. + ++||+.-+ ..+ .+.+..+...||||+.+-
T Consensus 81 ~~~~v~~ir~~~~---~~Pv~lm~-y~n~v~~~g~~~~~~~~~~aGadgii~~ 129 (268)
T 1qop_A 81 CFEMLAIIREKHP---TIPIGLLM-YANLVFNNGIDAFYARCEQVGVDSVLVA 129 (268)
T ss_dssp HHHHHHHHHHHCS---SSCEEEEE-CHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHhcCC---CCCEEEEE-cccHHHHhhHHHHHHHHHHcCCCEEEEc
Confidence 45677788777 5 78988742 122 356777888999999985
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=81.84 E-value=30 Score=31.59 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCC-C---cHHHHHHHHHc-CCcE-E--EEcCCCCcH---HHHHHHHHCCCeEe
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAF-P---HNENIKAILSE-KVAV-L--QVSWGEYSE---ELVLEAHSAGVKVV 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~-~---~~~~~~~~~e~-g~~~-i--~~~~G~~~~---~~v~~~~~~G~~v~ 114 (300)
.+++++.++.++..+..+ --.+++-... . +.+.++.+.+. +.++ + ..+.+-.+. .+.+.+.+.|+..+
T Consensus 147 ~~~~~~~~~a~~~~~~~G-~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i 225 (383)
T 3i4k_A 147 LPLDVAVAEIEERIEEFG-NRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF 225 (383)
T ss_dssp CCHHHHHHHHHHHHHHHC-CSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHhcC-CcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 467777666665543311 1233433222 1 13445555554 4432 2 233232222 34566777888887
Q ss_pred ecc---ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 115 PQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 115 ~~~---~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
.+. ..+..+.++++.+ ++||++.+.+.+..++..++..| +|.|++-...+.
T Consensus 226 EqP~~~~d~~~~~~l~~~~---~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 280 (383)
T 3i4k_A 226 EQPTPADDLETLREITRRT---NVSVMADESVWTPAEALAVVKAQAADVIALKTTKHG 280 (383)
T ss_dssp ESCSCTTCHHHHHHHHHHH---CCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTT
T ss_pred ECCCChhhHHHHHHHHhhC---CCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccC
Confidence 651 2355677888877 79999999999999999999976 789999754443
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.83 E-value=29 Score=31.20 Aligned_cols=141 Identities=12% Similarity=0.004 Sum_probs=76.1
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-...+|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.-..... .+..+.+.+.|++.+.+..
T Consensus 59 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 138 (332)
T 2r8w_A 59 ALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPV 138 (332)
T ss_dssp HHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5565566778777765432 367888888888877654 35766665443221 2345555666777665421
Q ss_pred --CCCc-HHHHHHH----HHCCCeEeec------------------------------cCh----hchHHHHHHhhCCCC
Q 022271 96 --GEYS-EELVLEA----HSAGVKVVPQ------------------------------DGL----ISLLPMVVDLIGDRD 134 (300)
Q Consensus 96 --G~~~-~~~v~~~----~~~G~~v~~~------------------------------~~~----~~ll~~v~~~~~~~~ 134 (300)
..|+ +.+++.. ...++.++.- .+. +..+.++++... .+
T Consensus 139 ~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdssgd~~~~~~~~~~l~~~~~-~~ 217 (332)
T 2r8w_A 139 SYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPLPADADYAGELARLRPKLS-DD 217 (332)
T ss_dssp CSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECCCTTCCHHHHHHHHTTTSC-TT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCCCCchhHHHHHHHHHHhcC-CC
Confidence 1111 2222221 1233333311 122 333334433321 12
Q ss_pred CcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 135 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 135 iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.. +..| +...+..++.+|++|++-|+..+++++
T Consensus 218 f~-v~~G---~D~~~l~~l~~G~~G~is~~anv~P~~ 250 (332)
T 2r8w_A 218 FA-IGYS---GDWGCTDATLAGGDTWYSVVAGLLPVP 250 (332)
T ss_dssp CE-EEEC---CHHHHHHHHHTTCSEEEESGGGTCHHH
T ss_pred EE-EEeC---chHHHHHHHHCCCCEEEeCHHHhCHHH
Confidence 33 3444 345678889999999999999887654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=81.80 E-value=22 Score=29.82 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=77.0
Q ss_pred HHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCC-CcHHHHH
Q 022271 27 LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGE-YSEELVL 104 (300)
Q Consensus 27 la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~-~~~~~v~ 104 (300)
+...+.+.+-+.++-. .+++++.+.++++-+.. -. .+.+....+. .+.++.+.+.-++.+. ..|. ...+-++
T Consensus 9 ~~~~l~~~~~i~v~r~---~~~~~~~~~~~al~~gG-v~-~iel~~k~~~~~~~i~~l~~~~~~~~v-gagtvi~~d~~~ 82 (214)
T 1wbh_A 9 AESILTTGPVVPVIVV---KKLEHAVPMAKALVAGG-VR-VLNVTLRTECAVDAIRAIAKEVPEAIV-GAGTVLNPQQLA 82 (214)
T ss_dssp HHHHHHSCSEEEEECC---SSGGGHHHHHHHHHHTT-CC-EEEEESCSTTHHHHHHHHHHHCTTSEE-EEESCCSHHHHH
T ss_pred HHHHHHHCCEEEEEEC---CCHHHHHHHHHHHHHcC-CC-EEEEeCCChhHHHHHHHHHHHCcCCEE-eeCEEEEHHHHH
Confidence 4455667777777753 35665555555554321 11 2333332222 4455544333233222 1122 2345566
Q ss_pred HHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 105 EAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 105 ~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.+.++|...++..++-.-+.+.+... ++|++. |+.|..++.+++.+|||.|.+ |- .+......+-+.+..
T Consensus 83 ~A~~aGAd~v~~p~~d~~v~~~~~~~---g~~~i~--G~~t~~e~~~A~~~Gad~v~~---Fp--a~~~gG~~~lk~i~~ 152 (214)
T 1wbh_A 83 EVTEAGAQFAISPGLTEPLLKAATEG---TIPLIP--GISTVSELMLGMDYGLKEFKF---FP--AEANGGVKALQAIAG 152 (214)
T ss_dssp HHHHHTCSCEEESSCCHHHHHHHHHS---SSCEEE--EESSHHHHHHHHHTTCCEEEE---TT--TTTTTHHHHHHHHHT
T ss_pred HHHHcCCCEEEcCCCCHHHHHHHHHh---CCCEEE--ecCCHHHHHHHHHCCCCEEEE---ec--CccccCHHHHHHHhh
Confidence 66667766665433222222333333 688877 499999999999999999998 43 233223455556665
Q ss_pred CC
Q 022271 185 MD 186 (300)
Q Consensus 185 a~ 186 (300)
.-
T Consensus 153 ~~ 154 (214)
T 1wbh_A 153 PF 154 (214)
T ss_dssp TC
T ss_pred hC
Confidence 43
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=81.61 E-value=2.8 Score=35.18 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=43.2
Q ss_pred HHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE-------ccCC---CChHHHHHHHHCCCcEEEeccccc
Q 022271 101 ELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA-------AGGI---VDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia-------aGGI---~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++++.+.++|+..++. .....+.++++.+ ++|++. .+++ .+.+++..++..|||.|.+++...
T Consensus 27 ~~a~~~~~~Ga~~i~~-~~~~~i~~i~~~~---~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~ 99 (223)
T 1y0e_A 27 KMALAAYEGGAVGIRA-NTKEDILAIKETV---DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQ 99 (223)
T ss_dssp HHHHHHHHHTCSEEEE-ESHHHHHHHHHHC---CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS
T ss_pred HHHHHHHHCCCeeecc-CCHHHHHHHHHhc---CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecc
Confidence 4455555666666553 2345566777766 788863 4556 456788899999999999998654
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=81.26 E-value=2.3 Score=40.59 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=48.3
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL 61 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~ 61 (300)
|++.+++.+|+++++|. .+++.+|+.++++.|++|++.. + .++++.++.+++++..
T Consensus 42 Lt~~~~l~iP~is~~m~-~v~~~~lA~al~~~GglG~i~~-~-~~~e~~~~~v~~v~~~ 97 (494)
T 1vrd_A 42 LTRQIRINIPLVSAAMD-TVTEAALAKALAREGGIGIIHK-N-LTPDEQARQVSIVKKT 97 (494)
T ss_dssp SSSSCEESSSEEECCCT-TTCSHHHHHHHHTTTCEEEECS-S-SCHHHHHHHHHHHHTC
T ss_pred hhCCCccCceeEecchH-HHhHHHHHHHHHHcCCceEEec-C-CChHHHHHHHHhhhhH
Confidence 46778899999999998 7999999999999999999975 3 6888888888777654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=81.04 E-value=5 Score=35.65 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHH-HH---HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG-YV---AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-v~---aa 152 (300)
..+++.+++.|++.+... |...+ .... ...--..++..+++.+++ ++|||+.=|=.+-++ +. .+
T Consensus 31 ~~lv~~li~~Gv~gl~~~-GttGE-~~~L---------s~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a 98 (297)
T 3flu_A 31 RDLIDWHIENGTDGIVAV-GTTGE-SATL---------SVEEHTAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAA 98 (297)
T ss_dssp HHHHHHHHHTTCCEEEES-STTTT-GGGS---------CHHHHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeC-ccccC-cccC---------CHHHHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHH
Confidence 467788888899988765 33110 0000 000012455556666643 699988655434444 32 44
Q ss_pred HHCCCcEEEeccccccCc-ccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~-Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||++++-++|.... +...-. |=+.|.++.+.- ..++. .|++.+.-+..+.+.++.
T Consensus 99 ~~~Gadavlv~~P~y~~~~~~~l~~-~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 99 EKAGADYTLSVVPYYNKPSQEGIYQ-HFKTIAEATSIP-MIIYN---VPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHH-HHHHHHHHCCSC-EEEEE---CHHHHSSCCCHHHHHHHT
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHhCCCC-EEEEE---CCchhccCCCHHHHHHHH
Confidence 569999999999998743 111222 333444444433 23443 244434455555555543
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=81.02 E-value=5.2 Score=35.72 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHH----HH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~----aa 152 (300)
..+++.+++.|++.+.+. |...+ .... ...--..++..+++.+++ ++|||+.=|=.+-++.. .+
T Consensus 39 ~~lv~~li~~Gv~gi~v~-GttGE-~~~L---------t~~Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a 106 (304)
T 3l21_A 39 ARLANHLVDQGCDGLVVS-GTTGE-SPTT---------TDGEKIELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKAC 106 (304)
T ss_dssp HHHHHHHHHTTCSEEEES-STTTT-GGGS---------CHHHHHHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeC-ccccc-hhhC---------CHHHHHHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHH
Confidence 567888889999988775 33110 0000 000012455556666543 68999865544444433 44
Q ss_pred HHCCCcEEEeccccccCcccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhh
Q 022271 153 LSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 216 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 216 (300)
-.+|||+|++-++|....--..--.|=+.|.++.+.- ..++. .|++.+.-+..+.+.++.
T Consensus 107 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lP-iilYn---~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 107 AAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELP-MLLYD---IPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSC-EEEEE---CHHHHSSCCCHHHHHHHH
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCC-EEEEe---CccccCCCCCHHHHHHHh
Confidence 4589999999999987531111112233444444433 23443 244334455555555544
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=80.76 E-value=1.9 Score=41.36 Aligned_cols=55 Identities=16% Similarity=0.495 Sum_probs=47.3
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHh
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS 60 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~ 60 (300)
+++.+++.+|+|++||. .++..+|+.++++.|++|++.. + .+++++.+.+++++.
T Consensus 55 Lt~~~~~~iP~vsa~md-~~t~~~la~~ia~~gg~gii~~-~-~t~e~~~~~v~~v~~ 109 (514)
T 1jcn_A 55 LTRKITLKTPLISSPMD-TVTEADMAIAMALMGGIGFIHH-N-CTPEFQANEVRKVKN 109 (514)
T ss_dssp SSSSCEESSCEEECCCT-TTCSHHHHHHHHHTTCEEEECC-S-SCHHHHHHHHHHHHT
T ss_pred ccCCeeEeceEEEEehh-hhhhhhHHHHHHhcCCeeEEec-C-CCHHHHHHHHHhhhh
Confidence 45678889999999998 7999999999999999999975 2 589988888877764
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=80.65 E-value=11 Score=33.98 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHCCCeEeecc---ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEecccccc
Q 022271 102 LVLEAHSAGVKVVPQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVA 168 (300)
Q Consensus 102 ~v~~~~~~G~~v~~~~---~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~ 168 (300)
+.+.+.+.|+..+.+. ..+..+.++++.+ ++||++.+.+.+.+++..++..| +|.|++....+.
T Consensus 208 ~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~---~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~G 275 (359)
T 1mdl_A 208 RSQALQQEGVTWIEEPTLQHDYEGHQRIQSKL---NVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIG 275 (359)
T ss_dssp HHHHHHHHTCSCEECCSCTTCHHHHHHHHHTC---SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTT
T ss_pred HHHHHHHhCCCeEECCCChhhHHHHHHHHHhC---CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhC
Confidence 4445556677666541 2455667777766 79999999999999999999986 799999755544
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.33 E-value=30 Score=30.39 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=76.0
Q ss_pred HHHHHHHhCCceEEecCCC-----CCCHHHHHHHHHHHHhhc--CCcEEeeeecCCCc--HHHHHHHHHcCCcEEEEcC-
Q 022271 26 ELVAAVANAGGLGLLRAPD-----WEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSW- 95 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~-----~~~~~~l~~~i~~~r~~~--~~P~gvnl~~~~~~--~~~~~~~~e~g~~~i~~~~- 95 (300)
+++.-..++|.=|++.+|. .++.++-.+.++.+.+.. +.|+-++.-..... .+..+.+.+.|++.+.+..
T Consensus 25 ~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (292)
T 2vc6_A 25 DLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSP 104 (292)
T ss_dssp HHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5666666778777775532 367777777777776653 35665554432211 2334445555666554321
Q ss_pred ----------------------------------CC-CcHHHHHHHHH-CCCeEeec--cChhchHHHHHHhhCCCCCcE
Q 022271 96 ----------------------------------GE-YSEELVLEAHS-AGVKVVPQ--DGLISLLPMVVDLIGDRDIPI 137 (300)
Q Consensus 96 ----------------------------------G~-~~~~~v~~~~~-~G~~v~~~--~~~~~ll~~v~~~~~~~~iPV 137 (300)
|. .+.+.+.++.+ ..-.+... .+.+..+.++++... .+..|
T Consensus 105 ~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~gd~~~~~~~~~~~~-~~f~v 183 (292)
T 2vc6_A 105 YYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERMACG-EDFNL 183 (292)
T ss_dssp CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHHHSC-TTSEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCCCCHHHHHHHHHHcC-CCEEE
Confidence 11 12233333322 21111111 123344455555432 14555
Q ss_pred EEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 138 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 138 iaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
+ .| +...+..++.+|++|++-|+..++.++
T Consensus 184 ~-~G---~d~~~~~~l~~G~~G~is~~~n~~P~~ 213 (292)
T 2vc6_A 184 L-TG---EDGTALGYMAHGGHGCISVTANVAPAL 213 (292)
T ss_dssp E-ES---CGGGHHHHHHTTCCEEEESGGGTCHHH
T ss_pred E-EC---chHHHHHHHHcCCCEEEecHHHhCHHH
Confidence 4 44 345678899999999999999887654
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=80.23 E-value=3.4 Score=36.98 Aligned_cols=75 Identities=11% Similarity=-0.091 Sum_probs=53.0
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
+.+.++...+.|++.|++--.. |.+ +.. .|.... ...+..+.++++.+ ++||++-++|..-..+..+.++
T Consensus 30 ~~e~A~~ye~~GA~~lsvLe~~-~~D-i~~---~~g~~R--~~~~~~i~~i~~~v---~iPvl~k~~i~~ide~qil~aa 99 (297)
T 4adt_A 30 NVEQAKIAEKAGAIGVMILENI-PSE-LRN---TDGVAR--SVDPLKIEEIRKCI---SINVLAKVRIGHFVEAQILEEL 99 (297)
T ss_dssp SHHHHHHHHHHTCSEEEECCCC-C---------CCCCCC--CCCHHHHHHHHTTC---CSEEEEEEETTCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCEEEEecCC-CCc-chh---cCCccc--CCCHHHHHHHHHhc---CCCEEEeccCCcHHHHHHHHHc
Confidence 4577888889999998765322 211 111 111000 23678889999887 8999999999888888888899
Q ss_pred CCcEE
Q 022271 156 GAQGI 160 (300)
Q Consensus 156 GAdgV 160 (300)
|||.|
T Consensus 100 GAD~I 104 (297)
T 4adt_A 100 KVDML 104 (297)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 99999
|
| >1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 | Back alignment and structure |
|---|
Probab=80.13 E-value=3.2 Score=36.41 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=52.9
Q ss_pred HHHc-CCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cC---hhchHHHHHHhhCC----CCCcEEEccCCCChHHHH
Q 022271 83 ILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DG---LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYV 150 (300)
Q Consensus 83 ~~e~-g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~---~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~ 150 (300)
+... |.+++.+....|++++++.+++.+..++.. .. .+..++++.+.+++ .++||++.|...|.+-
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~-- 229 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEI-- 229 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH--
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHH--
Confidence 3456 888888877778889999998888777754 22 45556666665532 1388988888776533
Q ss_pred HHHHCCCcEEEe
Q 022271 151 AALSLGAQGICL 162 (300)
Q Consensus 151 aal~lGAdgV~~ 162 (300)
+..+|||++.-
T Consensus 230 -a~~iGad~~~~ 240 (262)
T 1xrs_B 230 -AKELGYDAGFG 240 (262)
T ss_dssp -HHTTTCSEEEC
T ss_pred -HHHcCCeEEEC
Confidence 55679997653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 300 | ||||
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 1e-07 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 7e-07 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 2e-05 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 4e-04 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 0.001 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 0.001 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 0.003 |
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 44/195 (22%)
Query: 14 VQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGV 70
QA + +++ +A A GG +RA E +++ + +
Sbjct: 11 CQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHS 70
Query: 71 VLAF-PHNENIKAILSEKVAVLQV------SWGEYSEELVLEAHSAGVKVVPQDGLIS-- 121
+ ++ + ++ + V+ + E +ELV + V + +
Sbjct: 71 DVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVE 130
Query: 122 --------------------------------LLPMVVDLIGDRDIPIIAAGGIVDARGY 149
+ D++ D +IA G ++ Y
Sbjct: 131 EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMY 190
Query: 150 VAALSLGAQGICLGT 164
+ LG +G
Sbjct: 191 KRVMDLGVHCSVVGG 205
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 48.0 bits (114), Expect = 7e-07
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 41 RAPDWEAPDYLRDLIRKTRSLTER-PFGVGVVLAFPHNENIKAILSEKVAVLQVS---WG 96
D + + L LI + V +V + ++Q+S G
Sbjct: 575 PHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGG 634
Query: 97 EYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156
+ L H AG G+ + ++++ + + A GG+ V A +G
Sbjct: 635 TGASPLSSIKH-AGSPWEL--GVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMG 691
Query: 157 AQGICLGTRF 166
A+ G+
Sbjct: 692 AEEYGFGSIA 701
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 43.8 bits (103), Expect = 2e-05
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 13/133 (9%)
Query: 41 RAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99
D + + L LI + + + V +V + ++ +S
Sbjct: 548 PHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGG 607
Query: 100 EELVLEAHSAGVKVVPQDGL--ISLLPMVVD---LIGDRD-IPIIAAGGIVDARGYVAAL 153
++ + GL L V L R + + GG+ R V A
Sbjct: 608 ------TGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA 661
Query: 154 SLGAQGICLGTRF 166
LGA+ +GT
Sbjct: 662 MLGAEEFGIGTAS 674
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 6/131 (4%)
Query: 40 LRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY- 98
+ + I + S P V V + + A + +
Sbjct: 135 VMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGT 194
Query: 99 ---SEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155
E + + L + +IA+GG+ DA A++L
Sbjct: 195 NFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPA--STMIASGGLQDALDVAKAIAL 252
Query: 156 GAQGICLGTRF 166
GA + F
Sbjct: 253 GASCTGMAGHF 263
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 37.5 bits (86), Expect = 0.001
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 24 GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL--TERPFGVGVVLAFPHNENIK 81
E++ A A A + L+ R L+ + L P V V E
Sbjct: 118 LVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAAL 177
Query: 82 AILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPI 137
A+ +A + V+ E + + + G+ + ++ +P+
Sbjct: 178 ALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPL 237
Query: 138 IAAGGIVDARGYVAALSLGAQGICLGTRFV 167
+A+GG+ AL+LGA + + +
Sbjct: 238 VASGGVYTGTDGAKALALGADLLAVARPLL 267
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 37.1 bits (85), Expect = 0.001
Identities = 24/196 (12%), Positives = 49/196 (25%), Gaps = 44/196 (22%)
Query: 13 IVQAPLG--PDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRK-TRSLTERPF 66
QA G ++ +A A G +RA ++ + + ++ +
Sbjct: 18 SCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDY 77
Query: 67 GVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMV 126
+ + + +AV+ + + L+ S +V + L+ +
Sbjct: 78 PPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADI 137
Query: 127 VDLIGDR--------------------------------------DIPIIAAGGIVDARG 148
I +IA G I
Sbjct: 138 STFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEE 197
Query: 149 YVAALSLGAQGICLGT 164
LG GI +G
Sbjct: 198 AKKINDLGVAGIVVGG 213
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 36.5 bits (83), Expect = 0.003
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 20 PDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN 79
EL + + G + + P+ +R++ R R + PF + +
Sbjct: 128 SGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVS 187
Query: 80 IKAILSE-----KVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLIS---LLPMVVDLIG 131
I E A VS + + G G +S + P+ + +
Sbjct: 188 IARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVT 247
Query: 132 D-----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167
PI+A GGI A + L GA + + +
Sbjct: 248 TIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQ 288
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.93 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.9 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.83 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.78 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.7 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.65 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.39 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.39 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.28 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.24 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.11 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.09 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.08 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.04 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.04 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.96 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.9 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.79 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.79 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.77 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.73 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.73 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.63 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.55 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.52 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.44 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.33 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.29 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.23 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.2 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.07 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.07 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.92 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.92 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 97.77 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.73 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.72 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.66 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 97.63 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.63 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.61 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.59 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.55 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.5 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.48 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.46 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.46 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.46 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.41 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 97.39 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.33 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.3 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.29 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.24 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.17 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.17 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.12 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.97 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 96.97 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.91 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 96.62 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.62 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 96.59 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 96.5 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.38 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 96.32 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.15 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.1 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.1 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 96.02 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 95.98 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 95.97 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.52 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.5 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 94.82 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.65 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 94.6 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 94.43 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 94.42 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 94.0 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.74 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 93.65 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 93.61 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 93.46 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 93.46 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 92.03 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 91.79 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 91.78 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 91.56 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 91.43 | |
| d1xrsb1 | 160 | D-lysine 5,6-aminomutase beta subunit KamE, C-term | 91.12 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 90.98 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 90.75 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 90.67 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 90.62 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 90.34 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 89.71 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 89.57 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 89.04 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 89.0 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 88.97 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 88.91 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 87.96 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 87.85 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 87.78 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 87.74 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 87.48 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 87.01 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 86.83 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 86.48 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 86.44 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 86.02 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 85.59 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 85.58 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 85.41 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 84.97 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 84.84 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 84.77 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 84.12 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 84.09 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 84.0 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.83 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 83.01 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 82.99 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 82.92 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 82.79 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 82.73 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 82.6 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 82.55 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 81.83 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 81.35 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 80.95 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 80.56 |
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.3e-25 Score=203.18 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=129.4
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKA 82 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~ 82 (300)
+++.+++++|||++||. ++++++||.++|++||+|+|+. +.++++..+.++++++. ..++++++-....+.+.++.
T Consensus 30 lt~~l~~~iPIIaa~Md-tV~~~~mA~als~~GGlGvi~r--~~~~e~~~~~i~~vk~~-~~~v~~~vgv~~~~~e~~~~ 105 (330)
T d1vrda1 30 LTRQIRINIPLVSAAMD-TVTEAALAKALAREGGIGIIHK--NLTPDEQARQVSIVKKT-RLLVGAAVGTSPETMERVEK 105 (330)
T ss_dssp SSSSCEESSSEEECCCT-TTCSHHHHHHHHTTTCEEEECS--SSCHHHHHHHHHHHHTC-CBCCEEEECSSTTHHHHHHH
T ss_pred EecCcccCCCEEeCCCC-CcCCHHHHHHHHHCCCeEEeec--ccchhhhHHHHHHHhhh-ccEEEEEEecCHHHHHHHHH
Confidence 56788999999999998 8999999999999999999987 46899988888888763 34555555554556788999
Q ss_pred HHHcCCcEEEE--cCCCCcHHH---HHHHHH--CCCeEeec--------------------------------------c
Q 022271 83 ILSEKVAVLQV--SWGEYSEEL---VLEAHS--AGVKVVPQ--------------------------------------D 117 (300)
Q Consensus 83 ~~e~g~~~i~~--~~G~~~~~~---v~~~~~--~G~~v~~~--------------------------------------~ 117 (300)
+++++++++.+ +.|. +..+ ++.+++ ..+.+++. .
T Consensus 106 li~agvd~ivId~A~G~-~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~ 184 (330)
T d1vrda1 106 LVKAGVDVIVIDTAHGH-SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGV 184 (330)
T ss_dssp HHHTTCSEEEECCSCCS-SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCC
T ss_pred HHHCCCCEEEEecCCCC-chhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceecccc
Confidence 99999998875 3454 3333 333332 23333321 1
Q ss_pred C---hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHH
Q 022271 118 G---LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 179 (300)
Q Consensus 118 ~---~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k 179 (300)
+ ++.+++++++.+ ++||||+|||.+++|+++||++|||+|||||+|..|+||+.+-.++
T Consensus 185 p~~sai~~~~~~~~~~---~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~ 246 (330)
T d1vrda1 185 PQLTAVMECSEVARKY---DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILY 246 (330)
T ss_dssp CHHHHHHHHHHHHHTT---TCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEE
T ss_pred ccchhHHHHHHHHHhc---CceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEE
Confidence 1 333455555544 8999999999999999999999999999999999999999876543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.90 E-value=1.6e-23 Score=194.88 Aligned_cols=170 Identities=18% Similarity=0.295 Sum_probs=127.7
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeee-----------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----------- 71 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~----------- 71 (300)
|++.+++++|||++||. ++++++||.+++++||||+|+. +.++++..++++++++..+.|+..+..
T Consensus 39 lt~~~~l~iPIIsApMd-tVt~~~mA~als~~GGLGvLhr--~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg 115 (378)
T d1jr1a1 39 LTKKITLKTPLVSSPMD-TVTEAGMAIAMALTGGIGFIHH--NCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIG 115 (378)
T ss_dssp SSSSCEESSCEEECCCT-TTCSHHHHHHHHHHTCEEEECC--SSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEEC
T ss_pred EECCccCCCCEEECCCC-CcCCHHHHHHHHHCCCeeEEcC--CCCHHHHHHHHheehhhhhCcccccccccCEEEEEEec
Confidence 56778899999999998 8999999999999999999997 479999999999999988777654321
Q ss_pred cCCCcHHHHHHHHHcCCcEEEEcCCCC-c---HHHHHHHHHC--CCeEeec-----------------------------
Q 022271 72 LAFPHNENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSA--GVKVVPQ----------------------------- 116 (300)
Q Consensus 72 ~~~~~~~~~~~~~e~g~~~i~~~~G~~-~---~~~v~~~~~~--G~~v~~~----------------------------- 116 (300)
....+.+.++.+.+.+++++.+..... . .+.++.+++. .+.++..
T Consensus 116 ~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~c 195 (378)
T d1jr1a1 116 THEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSIC 195 (378)
T ss_dssp SSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTB
T ss_pred cCHHHHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccc
Confidence 111234567888899999998754221 1 1223333321 3333321
Q ss_pred ---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 117 ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 117 ---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+.++.+.++.++.++.++||||+|||.++.|+++||++|||+|||||+|..|.||+..
T Consensus 196 tTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~ 263 (378)
T d1jr1a1 196 ITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 263 (378)
T ss_dssp CHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSC
T ss_pred ccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCc
Confidence 12344555555444333899999999999999999999999999999999999999975
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.83 E-value=7.2e-20 Score=169.12 Aligned_cols=169 Identities=23% Similarity=0.329 Sum_probs=126.8
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCc-EEeeeecCCCcHHHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-FGVGVVLAFPHNENIK 81 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P-~gvnl~~~~~~~~~~~ 81 (300)
|++.+.+++|||++||. ++++++|+.++++.||+|+|+. +.++++..+.+++.++..++. +++.+-......+.++
T Consensus 37 it~~~~~~iPIIsA~MD-tV~~~~mA~~ls~~Gglgvlhr--~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~ 113 (365)
T d1zfja1 37 LADNLTLNIPIITAAMD-TVTGSKMAIAIARAGGLGVIHK--NMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAE 113 (365)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHH
T ss_pred eeCCcccCCCEEECCCC-CcCCHHHHHHHHHCCCceEEcC--ccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHH
Confidence 45677889999999998 8999999999999999999987 468888888888887765443 4444444444567889
Q ss_pred HHHHcCCcEEEEcC--CCCcHH---HHHHHH-----------------------HCCCeEeec-----------------
Q 022271 82 AILSEKVAVLQVSW--GEYSEE---LVLEAH-----------------------SAGVKVVPQ----------------- 116 (300)
Q Consensus 82 ~~~e~g~~~i~~~~--G~~~~~---~v~~~~-----------------------~~G~~v~~~----------------- 116 (300)
.+++.++++|.+.. |. ... .++.++ ++|+..+-.
T Consensus 114 ~l~~agvd~ivID~A~G~-s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvG 192 (365)
T d1zfja1 114 ALFEAGADAIVIDTAHGH-SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVG 192 (365)
T ss_dssp HHHHHTCSEEEECCSCTT-CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCC
T ss_pred HHHHcCCCEEEEECCccc-ccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeee
Confidence 99999999987643 32 222 222222 233332211
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+.++.+.++.++.++.++||||.|||.++.|+++||++|||+||||+.|..+.||+.+
T Consensus 193 vPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~ 251 (365)
T d1zfja1 193 VPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGE 251 (365)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCC
T ss_pred ccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCc
Confidence 23455666665554434799999999999999999999999999999999999999976
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.78 E-value=2.2e-18 Score=160.66 Aligned_cols=169 Identities=20% Similarity=0.372 Sum_probs=124.2
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhc-CCc----------------
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERP---------------- 65 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~-~~P---------------- 65 (300)
|++-+.++.|||.+||. ++++++||.++++.||+|+|+. +++.|+..+++++++... ..+
T Consensus 33 ~t~~~~l~iPIisA~MD-tVt~~~mAi~ma~~GGlgVihr--~~~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t 109 (388)
T d1eepa_ 33 LTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFT 109 (388)
T ss_dssp SSSSCEESSSEEECCCT-TTCSHHHHHHHHHHTSEEEECS--SSCHHHHHHHHHHHHTCC--------------------
T ss_pred eeCCEecCCCEEecCCC-CCCCHHHHHHHHHCCCEEEEeC--CCCHHHHHHHHHHhhhccccccccccCccccccchhhh
Confidence 44556678999999999 8999999999999999999987 369999999998886421 111
Q ss_pred --------------------------------EEeeeecCCCcHHHHHHHHHcCCcEEEEcC--CCCcH---HHHHHHHH
Q 022271 66 --------------------------------FGVGVVLAFPHNENIKAILSEKVAVLQVSW--GEYSE---ELVLEAHS 108 (300)
Q Consensus 66 --------------------------------~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~--G~~~~---~~v~~~~~ 108 (300)
++.-+-......+.++.+++.|++++.+.. |. .. +.++.+++
T Consensus 110 ~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~AhG~-s~~~~~~i~~ik~ 188 (388)
T d1eepa_ 110 AKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH-STRIIELIKKIKT 188 (388)
T ss_dssp ------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCS-SHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHHhhccceeeeeccccc-hHHHHHHHHHHHH
Confidence 111111112235778899999999998742 43 22 23333332
Q ss_pred --CCCeEeec--------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 109 --AGVKVVPQ--------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 109 --~G~~v~~~--------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
..+.++.. .+.++.+.++.++.+..++|||+.|||.++.|
T Consensus 189 ~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gd 268 (388)
T d1eepa_ 189 KYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGD 268 (388)
T ss_dssp HCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHH
T ss_pred HCCCCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCc
Confidence 23444321 33566777777777656899999999999999
Q ss_pred HHHHHHCCCcEEEeccccccCcccCCC
Q 022271 149 YVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 149 v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
+++||++|||+||||+.|..|.||+..
T Consensus 269 i~KAla~GAd~VMlG~~lAg~~Espg~ 295 (388)
T d1eepa_ 269 VVKAIAAGADSVMIGNLFAGTKESPSE 295 (388)
T ss_dssp HHHHHHHTCSEEEECHHHHTBTTSSSC
T ss_pred eeeeEEeccceeecchhhhcccCCCce
Confidence 999999999999999999999999854
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=2.6e-16 Score=145.40 Aligned_cols=169 Identities=17% Similarity=0.228 Sum_probs=123.9
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCc---------EEeeeecC
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP---------FGVGVVLA 73 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P---------~gvnl~~~ 73 (300)
|++.+.++.|||.+||. .+++++|+.++++.||+|+|+- +.++++..+++++++.....| +.+.....
T Consensus 38 ~~~~~~l~iPIiss~MD-tV~~~~mA~~la~~Gglgvlhr--~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~ 114 (368)
T d2cu0a1 38 ITPNVKLNIPILSAAMD-TVTEWEMAVAMAREGGLGVIHR--NMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVS 114 (368)
T ss_dssp EETTEEESSSEEECCCT-TTCSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEEC
T ss_pred eeCCcccCCCEEeCCCC-CcCCHHHHHHHHHCCCeeEecc--cCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccC
Confidence 33445677899999999 8999999999999999999997 469998888888887642211 22222222
Q ss_pred CCcHHHHHHHHHcCCcEEEEcC--CCCcHHHHHHHH---H-CCCeEeec-------------------------------
Q 022271 74 FPHNENIKAILSEKVAVLQVSW--GEYSEELVLEAH---S-AGVKVVPQ------------------------------- 116 (300)
Q Consensus 74 ~~~~~~~~~~~e~g~~~i~~~~--G~~~~~~v~~~~---~-~G~~v~~~------------------------------- 116 (300)
....+.++.+++.|+++|.+.. |. ....++.++ + ....++..
T Consensus 115 ~~~~~r~~~l~~aGvd~ivID~A~Gh-~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~ 193 (368)
T d2cu0a1 115 PFDIKRAIELDKAGVDVIVVDTAHAH-NLKAIKSMKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRI 193 (368)
T ss_dssp TTCHHHHHHHHHTTCSEEEEECSCCC-CHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTCTTSSEEEECSSCSTTBCHHH
T ss_pred hHHHHHHHHHHHcCCCEEEecCcccc-hhhhhhhhhhhhhhcccceeeccccCHHHHHhhhcCcceeecccCcccccchh
Confidence 2345678888999999987643 44 333443333 2 34444432
Q ss_pred -----cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 117 -----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 117 -----~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+.++.+.++.++.++.++|||+.|||.++.|+++||++|||.||||+.|..+.||+..
T Consensus 194 ~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~ 257 (368)
T d2cu0a1 194 VAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGK 257 (368)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSC
T ss_pred hcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCc
Confidence 23456666666654334799999999999999999999999999999999999998864
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.65 E-value=1.3e-15 Score=140.47 Aligned_cols=162 Identities=24% Similarity=0.312 Sum_probs=115.1
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcC
Q 022271 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (300)
Q Consensus 8 g~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g 87 (300)
.++.|||.+||. .+++++|+.++++.|++|+|+- +.++|+..+++.+.+... ..++.. .......+.++.+.+.+
T Consensus 48 ~l~iPIIsAnMD-TVt~~~mA~~la~~GglgvihR--~~~ie~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~L~~ag 122 (362)
T d1pvna1 48 NLKIPLVSAIMQ-SVSGEKMAIALAREGGISFIFG--SQSIESQAAMVHAVKNFR-YLVGAG-INTRDFRERVPALVEAG 122 (362)
T ss_dssp EESSSEEECSCT-TTCSHHHHHHHHHTTCEEEECC--SSCHHHHHHHHHHHHTCC-CCCEEE-ECSSSHHHHHHHHHHHT
T ss_pred ccCCcEEecCCC-CcCCHHHHHHHHHCCCEEEEee--cCCHHHHHHHhhhhhhcc-cccccc-cchhhhHHHHHHHhhcC
Confidence 357899999998 8999999999999999999986 579988877777776532 112222 22223456778888888
Q ss_pred CcEEEEcC--CCCcH---HHHHHH------------------------HHCCCeEeec-----------------cChhc
Q 022271 88 VAVLQVSW--GEYSE---ELVLEA------------------------HSAGVKVVPQ-----------------DGLIS 121 (300)
Q Consensus 88 ~~~i~~~~--G~~~~---~~v~~~------------------------~~~G~~v~~~-----------------~~~~~ 121 (300)
++++.+.. |. .. +.++.+ -++|+..+-. .+.++
T Consensus 123 ~d~i~IDvAhG~-~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~s 201 (362)
T d1pvna1 123 ADVLCIDSSDGF-SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQAT 201 (362)
T ss_dssp CSEEEECCSCCC-BHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHH
T ss_pred ceEEeechhccc-hhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHH
Confidence 88887642 22 11 222222 2223222211 34566
Q ss_pred hHHHHHHhhC------CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCC
Q 022271 122 LLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 175 (300)
Q Consensus 122 ll~~v~~~~~------~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~ 175 (300)
.+-+++++.+ +.++|||+.|||.++.|+++||++|||+||||+.|..+.||+..
T Consensus 202 Av~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~ 261 (362)
T d1pvna1 202 AVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTR 261 (362)
T ss_dssp HHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSC
T ss_pred HHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCc
Confidence 6666655432 12699999999999999999999999999999999999999866
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=3.9e-13 Score=121.94 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=49.1
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
...++++..... ++|||+.|||.+|.|+++||++|||+|++|+.|+..-.+...+..++.|.
T Consensus 219 ~~~l~~~~~~~~--~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~ 280 (329)
T d1p0ka_ 219 AASLAEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQ 280 (329)
T ss_dssp HHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHH
Confidence 344556666553 79999999999999999999999999999999998765555555555443
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.39 E-value=5.7e-13 Score=113.53 Aligned_cols=146 Identities=15% Similarity=0.255 Sum_probs=94.6
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEE-eee-e------cCCCcHHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-VGV-V------LAFPHNENIKAI 83 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~g-vnl-~------~~~~~~~~~~~~ 83 (300)
|++++||..+...++++.+..++|+.|+... +++ .++++|+..+.|.- +.. . ....+.+..+..
T Consensus 13 ~~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~~----~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T d1y0ea_ 13 ALPDEPLHSSFIMSKMALAAYEGGAVGIRAN----TKE----DILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDEL 84 (222)
T ss_dssp CCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE----SHH----HHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHHHHHHCCCeEEecC----CHH----HHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhH
Confidence 5666777622234577777777888887542 343 45566676666642 111 1 111346677788
Q ss_pred HHcCCcEEEEcCCC------CcHHHHHHHHHC----------------------CCeEeec---------------cChh
Q 022271 84 LSEKVAVLQVSWGE------YSEELVLEAHSA----------------------GVKVVPQ---------------DGLI 120 (300)
Q Consensus 84 ~e~g~~~i~~~~G~------~~~~~v~~~~~~----------------------G~~v~~~---------------~~~~ 120 (300)
.+.+++.+.+.... ...+.++..++. |...+.. ...+
T Consensus 85 ~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~ 164 (222)
T d1y0ea_ 85 IESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF 164 (222)
T ss_dssp HHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHH
T ss_pred HHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHH
Confidence 88899988765321 123444444332 3222211 0135
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
.++.++++.+ ++|||++|||.|++|+.+++++|||||++||++..
T Consensus 165 ~~i~~~~~~~---~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 165 QFLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp HHHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 6777777776 89999999999999999999999999999999863
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=9.7e-12 Score=111.16 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=43.3
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
++..++++.+... ++|||++|||.+|.|+.+||++|||+|++||.|+..-
T Consensus 221 ~~~al~~~~~~~~--~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~ 270 (310)
T d1vcfa1 221 TARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA 270 (310)
T ss_dssp HHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred HHHHHHHHHhhcC--CCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHh
Confidence 4556777776653 7999999999999999999999999999999998753
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=5e-11 Score=108.92 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=52.8
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHH
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 182 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i 182 (300)
.++...+|++++++.. ++|||++|||.+|.|+++||+|||++|.+|..|+..--+...+...+.|
T Consensus 256 ~~~~~~l~~i~~~~~~-~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l 320 (349)
T d1tb3a1 256 SASIDALREVVAAVKG-KIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVL 320 (349)
T ss_dssp CCHHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcceeeeccCC-CeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHH
Confidence 3477899999998853 7999999999999999999999999999999999764433344444443
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.11 E-value=5e-10 Score=95.47 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhhcCCcEEeeeecC--------CCcHHHHHHHHHcCCcEEEEcCC
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA--------FPHNENIKAILSEKVAVLQVSWG 96 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~--------~~~~~~~~~~~e~g~~~i~~~~G 96 (300)
.+++.+..++|+.++... ++ +.++++|+.++.|........ .+.....+.+.+.+++++.+...
T Consensus 36 ~~~A~a~~~~Ga~~i~~~----~~----~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~ 107 (230)
T d1yxya1 36 PLMAKAAQEAGAVGIRAN----SV----RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCT 107 (230)
T ss_dssp HHHHHHHHHHTCSEEEEE----SH----HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEec----Ch----hhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecc
Confidence 477888888787665432 33 356678888888864332211 12356777888888888876431
Q ss_pred CC-------cHHHHHHH----------------------HHCCCeEeec------------cChhchHHHHHHhhCCCCC
Q 022271 97 EY-------SEELVLEA----------------------HSAGVKVVPQ------------DGLISLLPMVVDLIGDRDI 135 (300)
Q Consensus 97 ~~-------~~~~v~~~----------------------~~~G~~v~~~------------~~~~~ll~~v~~~~~~~~i 135 (300)
.. ..+.++.+ .++|...+.. ......+.++.... ++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i 184 (230)
T d1yxya1 108 KRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA---GI 184 (230)
T ss_dssp SSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---TC
T ss_pred cccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC---CC
Confidence 10 12333333 3334333321 01122344555554 89
Q ss_pred cEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 136 PIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 136 PViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
|||++|||+|++|+.+++++|||+|++||++.
T Consensus 185 pvia~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 185 AVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 99999999999999999999999999999975
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=3e-10 Score=101.82 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=101.4
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh----cCCcEEeeeecCCCc--HHHHHHHHH
Q 022271 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL----TERPFGVGVVLAFPH--NENIKAILS 85 (300)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~----~~~P~gvnl~~~~~~--~~~~~~~~e 85 (300)
.|..|||. |+|+..+..-+...| .+++.+ .|.+.+.+...-++.+++ .+.|++++|..+.|. .+.. .+++
T Consensus 2 ki~LAPM~-g~td~~fR~l~~~~g-~~~~~T-emi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa-~~~~ 77 (305)
T d1vhna_ 2 KVGLAPMA-GYTDSAFRTLAFEWG-ADFAFS-EMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAA-RILS 77 (305)
T ss_dssp EEEECCCT-TTCSHHHHHHHHTTT-CCCEEC-SCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHH-HHHT
T ss_pred eEEEECcC-CCccHHHHHHHHHHC-cCEEEE-CCEEechhhhCChhhHhhccCCCCCCeEEEEeccchhhhhhhh-hhhh
Confidence 47789998 899999997665554 576666 366666543333333332 368999999998774 2334 3456
Q ss_pred cCCcEEEEcCCCCcHHHHH-------------------HHH-HCCCeEeec-----------------------------
Q 022271 86 EKVAVLQVSWGEYSEELVL-------------------EAH-SAGVKVVPQ----------------------------- 116 (300)
Q Consensus 86 ~g~~~i~~~~G~~~~~~v~-------------------~~~-~~G~~v~~~----------------------------- 116 (300)
.+.+.|.+++|||.+.++. .++ ...+.|...
T Consensus 78 ~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~ 157 (305)
T d1vhna_ 78 EKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHT 157 (305)
T ss_dssp TTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEES
T ss_pred hheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEech
Confidence 7999999999998543332 222 223333221
Q ss_pred ---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccccCc
Q 022271 117 ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl~t~ 170 (300)
...+..++++ + .++|||+.|||.|.+|+.+++. .|+||||+|+..+..+
T Consensus 158 Rt~~q~~~~~a~~~~i~~~----~-~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP 216 (305)
T d1vhna_ 158 RTVVQSFTGRAEWKALSVL----E-KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRP 216 (305)
T ss_dssp SCTTTTTSSCCCGGGGGGS----C-CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCT
T ss_pred hhhhhccccchhhhHHHhh----h-hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhh
Confidence 0122333322 2 2699999999999999999997 5999999998887764
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.08 E-value=6.3e-10 Score=101.22 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=52.2
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHH
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 183 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~ 183 (300)
.++...+++++... ++|||++|||++|-|+++||+||||+|.+|..||........+...+.|-
T Consensus 261 ~~~~~~l~~i~~~~---~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~egv~~~l~ 324 (353)
T d1p4ca_ 261 ISPMEVLAQSVAKT---GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLT 324 (353)
T ss_dssp CCGGGTHHHHHHHH---CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcccchhccc---ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHH
Confidence 45788999998887 79999999999999999999999999999999997644333444444433
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.04 E-value=4.5e-10 Score=102.65 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.0
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++...++++++.+.. ++|||++|||++|-|+++||+||||.|.+|.+||..
T Consensus 264 ~~~~~l~~i~~~~~~-~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~ 314 (359)
T d1goxa_ 264 ATIMALEEVVKAAQG-RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 314 (359)
T ss_dssp CHHHHHHHHHHHTTT-SSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred chhhhchhhhhccCC-ccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 467788999888753 799999999999999999999999999999999965
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.04 E-value=9.7e-11 Score=105.21 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-HHHHHHHHHcCCcEEEEcCCCCc----------HHHHHHHH--HCCCe
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSWGEYS----------EELVLEAH--SAGVK 112 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~-~~~~~~~~e~g~~~i~~~~G~~~----------~~~v~~~~--~~G~~ 112 (300)
.+++.+++.++++|+.++.|+.+++....+. .+.++.+.+.|++.|+....... ...+.... ..|..
T Consensus 154 ~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~ 233 (312)
T d1gtea2 154 QDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV 233 (312)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred hhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccc
Confidence 3678899999999999999999999876554 55677888999999876421100 00000000 11111
Q ss_pred Eeec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 113 VVPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 113 v~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.... .-.+..+.++++.+. ++|||+.|||.|++|+.+++.+|||+||+||.|+..
T Consensus 234 sG~~i~~~al~~v~~~~~~~~--~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~ 290 (312)
T d1gtea2 234 SGTAIRPIALRAVTTIARALP--GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQ 290 (312)
T ss_dssp ESGGGHHHHHHHHHHHHHHST--TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred cCcCcchhhHHHHHHHHHHcC--CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhcc
Confidence 1110 113567788888763 699999999999999999999999999999999874
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=3.7e-09 Score=98.34 Aligned_cols=66 Identities=21% Similarity=0.446 Sum_probs=50.6
Q ss_pred hhchHHHHHHhhC----CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 119 LISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 119 ~~~ll~~v~~~~~----~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
...-+|++.+.+. ..++|||++|||++|-|+++||+||||+|.||+.||..--+...+...+.|-.
T Consensus 287 ~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~ 356 (414)
T d1kbia1 287 PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEI 356 (414)
T ss_dssp HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHH
Confidence 4566788876542 13699999999999999999999999999999999977444444445444443
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.90 E-value=3e-09 Score=104.36 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCC-----CCcHHHHHHHHHCCCeEeeccC
Q 022271 45 WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-----EYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G-----~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
+.++++|.+.|.++|+++ ++|++|++............+.+.++|+|.++.+ .-|...++ ..| .+
T Consensus 552 i~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d---~~G------lP 622 (771)
T d1ea0a2 552 IYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIK---FAG------LP 622 (771)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHH---HSC------CC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhh---cCC------cC
Confidence 358899999999999986 7999999987666677777788999999999742 22334443 345 45
Q ss_pred hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 119 LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 119 ~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
+..-|+++.+.+.. .+|.++++||+.++.|++++++||||+|.+||.++.+--|.
T Consensus 623 ~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi 681 (771)
T d1ea0a2 623 WEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCI 681 (771)
T ss_dssp HHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCH
Confidence 66677777776632 36999999999999999999999999999999999987775
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.79 E-value=1.5e-08 Score=87.59 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
.+.+.+.+.++++|+..+.|+.+ |.+.....++.++.+.+.|++.+.+- ..|+ .++...++++|+..+..
T Consensus 63 ~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip-DLP~eE~~~~~~~~~~~gl~~I~lva 141 (248)
T d1geqa_ 63 FKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVV-DLPVFHAKEFTEIAREEGIKTVFLAA 141 (248)
T ss_dssp CCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET-TCCGGGHHHHHHHHHHHTCEEEEEEC
T ss_pred ccHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEecc-CCcHHHHHHHHhhccccCcceEEEec
Confidence 46788888999999888888753 33222334677888888888888775 4443 34555566677666542
Q ss_pred ---------------------------c--------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 ---------------------------D--------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 ---------------------------~--------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
. ....++.++++.. ++||++..||.+++++++++..|||||.
T Consensus 142 Ptt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t---~~Pv~vGFGI~~~e~v~~~~~~~ADGvI 218 (248)
T d1geqa_ 142 PNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVV 218 (248)
T ss_dssp TTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred ccchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc---ccceeeecccCCHHHHHHHHhcCCCEEE
Confidence 0 1345677777765 7999999999999999999999999999
Q ss_pred eccccccCc
Q 022271 162 LGTRFVASE 170 (300)
Q Consensus 162 ~GT~fl~t~ 170 (300)
+||+|+-.-
T Consensus 219 VGSaiv~~i 227 (248)
T d1geqa_ 219 VGSALVKII 227 (248)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 999998754
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.79 E-value=1.3e-08 Score=100.12 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-----CCCcHHHHHHHHHCCCeEeeccC
Q 022271 45 WEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-----GEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~-----G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
..+++.|.+.|.++|+++ ++|++|+|............+.+.++|+|.++. |.-|...++ ..| .+
T Consensus 579 iysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~---~~G------lP 649 (809)
T d1ofda2 579 IYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIK---HAG------SP 649 (809)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHH---HBC------CC
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHh---cCC------cc
Confidence 357899999999999986 579999998766656667777789999999974 222444444 456 45
Q ss_pred hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC
Q 022271 119 LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 173 (300)
Q Consensus 119 ~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~ 173 (300)
+..-|+++.+.+.. .+|.++++||+.|+.|++++++||||+|.+||.++.+--|.
T Consensus 650 ~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi 708 (809)
T d1ofda2 650 WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCI 708 (809)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCH
Confidence 55666666666521 36999999999999999999999999999999999987665
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.77 E-value=3.8e-08 Score=85.99 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTRSLT-ERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~-~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~- 116 (300)
.+.+.+.+.++++|+.. +.|+-+ |.+.....+..++.+.+.|++.+.+- ..|+ .++.+.++++|+..+..
T Consensus 76 ~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip-DlP~ee~~~~~~~~~~~~l~~I~lv 154 (267)
T d1qopa_ 76 VTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFIC 154 (267)
T ss_dssp CCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEE
T ss_pred chhhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceecc-chhhhhhHHHHHhhhccCceEEEEe
Confidence 46678888899998864 678754 44444455788999999999998876 4553 45666777888876643
Q ss_pred ------------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 117 ------------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 117 ------------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
...-.++.++++.. ++||++..||.+++++++++..|||||
T Consensus 155 aPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~~~~~~~ADGv 231 (267)
T d1qopa_ 155 PPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGA 231 (267)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred cccccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc---cCCceeecccCCHHHHHHHHhcCCCEE
Confidence 11335677777765 899999999999999999999999999
Q ss_pred EeccccccCccc
Q 022271 161 CLGTRFVASEES 172 (300)
Q Consensus 161 ~~GT~fl~t~Es 172 (300)
++||+|+-.-|.
T Consensus 232 IVGSAivk~i~~ 243 (267)
T d1qopa_ 232 ISGSAIVKIIEK 243 (267)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHh
Confidence 999999986554
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.73 E-value=4.1e-09 Score=93.93 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCC-cHHHHHHHHHcCCcEEEEcCCCCcHHH--HHHH-----HHCCCeEeec-
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGEYSEEL--VLEA-----HSAGVKVVPQ- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-~~~~~~~~~e~g~~~i~~~~G~~~~~~--v~~~-----~~~G~~v~~~- 116 (300)
.+++.+.+.+..+|+..+.|+.+++..... ..+..+.+.+.+++.+...- ...... .... ...|..-...
T Consensus 147 ~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~g~sG~~i 225 (311)
T d1ep3a_ 147 TDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMIN-TLMGVRFDLKTRQPILANITGGLSGPAI 225 (311)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECC-CEEECCBCTTTCSBSSTTSCEEEESGGG
T ss_pred cCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEe-eccccccccccccccccccCCCCCCCcc
Confidence 367777777888888889999999977654 36677888889999887652 111000 0000 0001100000
Q ss_pred -cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 -DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 -~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.-.+.++.++++.+ ++|||+.|||.|++|+.+++.+|||+||+||.++.-
T Consensus 226 ~~~~l~~i~~i~~~~---~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~ 276 (311)
T d1ep3a_ 226 KPVALKLIHQVAQDV---DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp HHHHHHHHHHHHTTC---SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHC
T ss_pred cchhHHHHHHHhhhc---ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcC
Confidence 11356677777766 899999999999999999999999999999998753
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=98.73 E-value=1.3e-08 Score=90.76 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=100.1
Q ss_pred CccceecCCCCCCCCcH---HHHHHHHhCCceEEe----cCCCC-------CCHHHHHHHHHHHHhhcCCcEEeeeecCC
Q 022271 9 FEYGIVQAPLGPDISGP---ELVAAVANAGGLGLL----RAPDW-------EAPDYLRDLIRKTRSLTERPFGVGVVLAF 74 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~~---~la~avs~aGglG~i----~~~~~-------~~~~~l~~~i~~~r~~~~~P~gvnl~~~~ 74 (300)
.+.|++..=+ +.+.. +++..+..+++...+ +|++. .+++.+.+.++++++..+.|+.+++.+..
T Consensus 92 ~~~pvi~si~--~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~ 169 (311)
T d1juba_ 92 QEGPIFFSIA--GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYF 169 (311)
T ss_dssp SSSCCEEEEC--CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCC
T ss_pred cCCCceeecc--ccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhcccccceeecccccc
Confidence 4567775332 34433 566777777765553 44432 35788999999999999999999998765
Q ss_pred Cc---HHHHHHHHHcCCcEEEEcCCCCc------H--H-HHHHHHHCCCeEeec--cChhchHHHHHHhhCCCCCcEEEc
Q 022271 75 PH---NENIKAILSEKVAVLQVSWGEYS------E--E-LVLEAHSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPIIAA 140 (300)
Q Consensus 75 ~~---~~~~~~~~e~g~~~i~~~~G~~~------~--~-~v~~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPViaa 140 (300)
.. ...++.+.+.+.+.+........ . . ........|...... .-.+..+.++++.++ .++|||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~-~~~~Iig~ 248 (311)
T d1juba_ 170 DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIGT 248 (311)
T ss_dssp SHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC-TTSEEEEE
T ss_pred hhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcC-CCeeEEec
Confidence 43 23455666778887765321100 0 0 000000112111110 113455666666553 26999999
Q ss_pred cCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 141 GGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 141 GGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|||.|++|+.+++.+|||.||++|.|+.
T Consensus 249 GGI~s~~Da~~~i~aGA~~Vql~tal~~ 276 (311)
T d1juba_ 249 GGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCcCCHHHHHHHHHcCCCceeeeHhhHh
Confidence 9999999999999999999999999976
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.63 E-value=1.3e-08 Score=94.37 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=71.5
Q ss_pred cEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHH-HHCCCeEeec--cChhchHHHHHHhhCCCCCcEE
Q 022271 65 PFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEA-HSAGVKVVPQ--DGLISLLPMVVDLIGDRDIPII 138 (300)
Q Consensus 65 P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~-~~~G~~v~~~--~~~~~ll~~v~~~~~~~~iPVi 138 (300)
|+.|+|.+.... .+.++.+.+.+++.|+..-........... ...|+..... .-.+..+.++++.++. ++|||
T Consensus 268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~-~ipII 346 (409)
T d1tv5a1 268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNK-QIPII 346 (409)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTT-CSCEE
T ss_pred ceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCC-CceEE
Confidence 678888765543 456788889999999875321110000000 1234333321 1145677888887742 69999
Q ss_pred EccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 139 AAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 139 aaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
+.|||.|++|+.+.+.+||+.||++|.|+.-
T Consensus 347 GvGGI~s~~Da~e~i~AGAs~VQv~T~li~~ 377 (409)
T d1tv5a1 347 ASGGIFSGLDALEKIEAGASVCQLYSCLVFN 377 (409)
T ss_dssp EESSCCSHHHHHHHHHTTEEEEEESHHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCHHhhhhHHHhc
Confidence 9999999999999999999999999999864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.5e-07 Score=82.06 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEe----eeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec--
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ-- 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gv----nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~-- 116 (300)
.+.+.+.+.++++|+..+.|+.+ |.+.....+..++.+.+.|++.+.+- ..|+ .++...+++.|+..+..
T Consensus 74 ~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliip-DLP~ee~~~~~~~~~~~gl~~I~lvs 152 (271)
T d1ujpa_ 74 MSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLA 152 (271)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEEC
T ss_pred cchhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEecc-chhhhhHHHHHHHhhccccceeeccC
Confidence 46678888899999888888754 33222334677888888888888775 4443 45666677777776642
Q ss_pred -----------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 117 -----------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 117 -----------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
.....++.++++.. ++||++.-||.+++++..+ .|||||+
T Consensus 153 PtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~--~~ADGvI 227 (271)
T d1ujpa_ 153 PTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVV 227 (271)
T ss_dssp TTCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEE
T ss_pred CCcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc---cCCeEEeCCCCCHHHHHHh--CCCCEEE
Confidence 11334566666654 8999999999999998764 5999999
Q ss_pred eccccccCccc
Q 022271 162 LGTRFVASEES 172 (300)
Q Consensus 162 ~GT~fl~t~Es 172 (300)
+||+|+-.-|.
T Consensus 228 VGSAiV~~i~e 238 (271)
T d1ujpa_ 228 VGSALVRALEE 238 (271)
T ss_dssp ECHHHHHHHHT
T ss_pred EcHHHHHHHHh
Confidence 99999977543
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.52 E-value=1.4e-07 Score=82.05 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec------
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ------ 116 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~------ 116 (300)
.+.+.+.+.++++|+..+.|+-+-...+.-....++.+.+.|++.+.+- ..|+ .++.+.++++|+..+..
T Consensus 76 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~Iip-Dlp~eE~~~~~~~~~~~gl~~I~lvaPtt~ 154 (261)
T d1rd5a_ 76 TTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVP-DLPYVAAHSLWSEAKNNNLELVLLTTPAIP 154 (261)
T ss_dssp CCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECT-TCBTTTHHHHHHHHHHTTCEECEEECTTSC
T ss_pred cchhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeec-CccHHHHHHHHHHHhccccceEEEeccCCc
Confidence 5778888999999987777774321111000011333444555555442 2221 23344444444443321
Q ss_pred -------------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 117 -------------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 117 -------------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
..+..++.++++.. ++||++..||.+++++.+....|||||++||+
T Consensus 155 ~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t---~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSa 231 (261)
T d1rd5a_ 155 EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIGSA 231 (261)
T ss_dssp HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred hhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc---CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHH
Confidence 11345777777775 89999999999999999999999999999999
Q ss_pred cccCccc
Q 022271 166 FVASEES 172 (300)
Q Consensus 166 fl~t~Es 172 (300)
|+-.-|.
T Consensus 232 iv~~i~~ 238 (261)
T d1rd5a_ 232 MVRQLGE 238 (261)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 9976543
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=2e-07 Score=83.93 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=72.7
Q ss_pred cCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHH---HHHHCCCeEeec--cChhchHHHHHHhhCCC
Q 022271 62 TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVL---EAHSAGVKVVPQ--DGLISLLPMVVDLIGDR 133 (300)
Q Consensus 62 ~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~---~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~ 133 (300)
++.|+.+++.+.... .+.++.+.+.+++.+...-......... .....|+..... .-.+..+.++++.++.
T Consensus 210 ~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~- 288 (336)
T d1f76a_ 210 KYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNG- 288 (336)
T ss_dssp SCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTT-
T ss_pred CcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCC-
Confidence 578999999877653 4456777788998887642211110000 001234444432 1135667778877642
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++|||+.|||.|++|+.+.+.+||+.||+||.|+.
T Consensus 289 ~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~ 323 (336)
T d1f76a_ 289 RLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh
Confidence 69999999999999999999999999999999874
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.2e-07 Score=83.56 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=70.8
Q ss_pred cCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHH---HHHHCCCeEeec--cChhchHHHHHHhhCCC
Q 022271 62 TERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVL---EAHSAGVKVVPQ--DGLISLLPMVVDLIGDR 133 (300)
Q Consensus 62 ~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~---~~~~~G~~v~~~--~~~~~ll~~v~~~~~~~ 133 (300)
.++|+.+++.+.... .+.++.+.+.+++.|++.-......... .....|...... .-.+..+.++++..+ .
T Consensus 219 ~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~-~ 297 (367)
T d1d3ga_ 219 HRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ-G 297 (367)
T ss_dssp GCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT-T
T ss_pred cCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhC-C
Confidence 467999999876553 3467888889999988752211100000 000112222211 113456667766654 3
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
++|||+.|||.+++|+.+.+.+|||.||++|.|+.
T Consensus 298 ~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~ 332 (367)
T d1d3ga_ 298 RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF 332 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHh
Confidence 79999999999999999999999999999999875
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=1.9e-07 Score=83.09 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCcHH---HHHHHHHcC-CcEEEEcCCCCcH---------HHHHHHHHCCCeE
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNE---NIKAILSEK-VAVLQVSWGEYSE---------ELVLEAHSAGVKV 113 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~---~~~~~~e~g-~~~i~~~~G~~~~---------~~v~~~~~~G~~v 113 (300)
+++.+.+.++++|+.+++|+.+++.+.....+ ..+.+.+.. +.++...-...+. .........|...
T Consensus 142 ~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlS 221 (312)
T d2b4ga1 142 DFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLG 221 (312)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE
T ss_pred cHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcc
Confidence 57888888999999889999999987554322 222222332 3444332100000 0000000122222
Q ss_pred eec--cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 114 VPQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 114 ~~~--~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
... .-.+.++.++++.+. +.|||+.|||.|++|+.+++.+||+.||++|.|+.-
T Consensus 222 G~~l~~~al~~v~~~~~~~~--~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~ 277 (312)
T d2b4ga1 222 GKYVLPTALANVNAFFRRCP--DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDE 277 (312)
T ss_dssp EGGGHHHHHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHH
T ss_pred cccccchhhHHHHHHHHHcC--CCceeecCCcCCHHHHHHHHHcCCChheeehhhHhc
Confidence 211 113556677776663 678999999999999999999999999999998763
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=2e-06 Score=71.80 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=98.8
Q ss_pred ccceecCCCCCCCCcH----HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh--cCCcEEeeeecCCCcHHHHHHH
Q 022271 10 EYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL--TERPFGVGVVLAFPHNENIKAI 83 (300)
Q Consensus 10 ~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~--~~~P~gvnl~~~~~~~~~~~~~ 83 (300)
+.||| |+- ...++ +++.++. .||+.++=- .+.+|+.+ +.|+++++. .+.-+|++-+. +.++++.+
T Consensus 8 ~~~ii--pvl-r~~~~~~a~~~~~al~-~~Gi~~iEi-tlr~p~a~-~~i~~l~~~~~~~~~vGaGTV~---~~~~~~~a 78 (202)
T d1wa3a1 8 KHKIV--AVL-RANSVEEAKEKALAVF-EGGVHLIEI-TFTVPDAD-TVIKELSFLKEKGAIIGAGTVT---SVEQCRKA 78 (202)
T ss_dssp HHCEE--EEE-CCSSHHHHHHHHHHHH-HTTCCEEEE-ETTSTTHH-HHHHHTHHHHHTTCEEEEESCC---SHHHHHHH
T ss_pred hCCEE--EEE-ECCCHHHHHHHHHHHH-HcCCCEEEE-ecCCccHH-HHHHHHHHhcCCCcEEEecccc---cHHHHHHH
Confidence 45666 442 34554 3444433 466777743 24566544 355555432 34457777664 57889999
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC--------------h----------hchHHHHHHhhCCCCCcEEE
Q 022271 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG--------------L----------ISLLPMVVDLIGDRDIPIIA 139 (300)
Q Consensus 84 ~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~--------------~----------~~ll~~v~~~~~~~~iPVia 139 (300)
++.|++++..- |. .+++++.+++.|+.+++... . ...+..+..-+ .++|+++
T Consensus 79 ~~aGa~fivsP-~~-~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~G~~~lk~l~~p~--p~i~~ip 154 (202)
T d1wa3a1 79 VESGAEFIVSP-HL-DEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPF--PNVKFVP 154 (202)
T ss_dssp HHHTCSEEECS-SC-CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTC--TTCEEEE
T ss_pred HhhcccEEeCC-CC-cHHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEecchhhcCHHHHHHHhCcc--cCCcEEe
Confidence 99999999754 54 46899999999998886410 1 12333343333 3799999
Q ss_pred ccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 140 AGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 140 aGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
.||| |.+.+..+|++||.+|.+||.+...
T Consensus 155 tGGI-~~~n~~~~l~aga~avg~Gs~l~~~ 183 (202)
T d1wa3a1 155 TGGV-NLDNVCEWFKAGVLAVGVGSALVKG 183 (202)
T ss_dssp BSSC-CTTTHHHHHHHTCSCEEECHHHHCS
T ss_pred eCCC-CHHHHHHHHHCCCeEEEEchhhcCC
Confidence 9999 7899999999999999999988754
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=1.2e-05 Score=67.75 Aligned_cols=133 Identities=19% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecC------CCc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe-
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA------FPH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV- 114 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~------~~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~- 114 (300)
.+.++--..-+-.|++.+..+ |+|=.. .|+ .+..+.+++.|..+.-.... ..-+.+++.+.|+..+
T Consensus 75 ~tA~EAvr~A~lARE~~~t~~-IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~--D~v~ak~Le~~Gc~avM 151 (251)
T d1xm3a_ 75 STAEEAVRIARLAKASGLCDM-IKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSD--DVVLARKLEELGVHAIM 151 (251)
T ss_dssp SSHHHHHHHHHHHHHTTCCSS-EEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECS--CHHHHHHHHHHTCSCBE
T ss_pred hhHHHHHHHHHHHHHhcCCce-EEEEEecCCCCcCCCHHHHHHHHHHHHhCCcEEEEecCC--CHHHHHHHHHcCChhHH
Confidence 455554445555577654443 554331 122 35677888899888876533 3467788888887754
Q ss_pred ec-------cC--hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccC-CCHHHHHHHHc
Q 022271 115 PQ-------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 184 (300)
Q Consensus 115 ~~-------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~-~~~~~k~~i~~ 184 (300)
+. .| ....+..+++.. ++|||..+||+++.|++.++.+|||+|.+-|+...+..-. -..++|.++..
T Consensus 152 PlgsPIGSg~Gl~n~~~l~~i~~~~---~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~A 228 (251)
T d1xm3a_ 152 PGASPIGSGQGILNPLNLSFIIEQA---KVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEA 228 (251)
T ss_dssp ECSSSTTCCCCCSCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HhhhhhhcCCCcCChHHHHHHHhcC---CccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHHHH
Confidence 21 12 345677788776 8999999999999999999999999999999986654311 12345555543
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=1.8e-05 Score=70.86 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhcCCcEEeeeecCCCc---------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 50 YLRDLIRKTRSLTERPFGVGVVLAFPH---------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 50 ~l~~~i~~~r~~~~~P~gvnl~~~~~~---------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
-+.+.++.+|+..+.|++|.+...... .+.++.+.+.+++.+.++.|.... ......+ ....
T Consensus 195 f~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~--------~~~~~~~-~~~~ 265 (337)
T d1z41a1 195 FLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--------ADINVFP-GYQV 265 (337)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--------CCCCCCT-TTTH
T ss_pred HHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccc--------cccccCC-cccH
Confidence 356778888888889999987764321 345677788999999998775311 0000000 1234
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.+...+++.+ ++||++.|+|.|++.+.++|+.| ||.|.||+.|++-++
T Consensus 266 ~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd 314 (337)
T d1z41a1 266 SFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPF 314 (337)
T ss_dssp HHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred HHHHHHHHhc---CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCch
Confidence 5667788888 79999999999999999999998 999999999998864
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.07 E-value=3.6e-05 Score=65.20 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEeeeec--CC----Cc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEe
Q 022271 45 WEAPDYLRDLIRKTRSLTERPFGVGVVL--AF----PH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVV 114 (300)
Q Consensus 45 ~~~~~~l~~~i~~~r~~~~~P~gvnl~~--~~----~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~ 114 (300)
..++++..+.-+-.|++...--.|+|=. .. |+ .+..+.+.+.|..++.... +..-+.+++.+.|+..+
T Consensus 75 c~taeeAv~~A~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~--~D~v~ak~le~~Gc~~v 152 (243)
T d1wv2a_ 75 CYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTS--DDPIIARQLAEIGCIAV 152 (243)
T ss_dssp CCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEEC--SCHHHHHHHHHSCCSEE
T ss_pred cccHHHHHHHHHHHHHHhCCCceEEEeeeccccccCCcHHHHHHHHHHhhcCceEEEeccC--CCHHHHhHHHHcCceee
Confidence 3566655555555566542222244432 11 22 2345566677777776652 33456788888988765
Q ss_pred ec--------cC--hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 115 PQ--------DG--LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 115 ~~--------~~--~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
-. .+ ....+..+++.. ++|||+++||+++.|++.++.||||||.+.|+..-+.
T Consensus 153 MplgsPIGsg~Gi~n~~~l~~i~~~~---~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~ 215 (243)
T d1wv2a_ 153 MPLAGLIGSGLGICNPYNLRIILEEA---KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAK 215 (243)
T ss_dssp EECSSSTTCCCCCSCHHHHHHHHHHC---SSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSS
T ss_pred eecccccccccccccHHHHHhccccC---CcceEeecccCCHHHHHHHHHccCCEEEechHhhcCC
Confidence 32 11 233455566655 8999999999999999999999999999999986664
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.92 E-value=4.7e-05 Score=63.91 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC--CcHHHHHHHHHCCCeEeec---------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQ--------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--~~~~~v~~~~~~G~~v~~~--------------- 116 (300)
.++.+|+.++.|+=|-|+...|.. +++.+.+.|++.|.++... .+...++.+++.|.++...
T Consensus 50 ~i~~i~~~t~~~~dvHLMv~~P~~-~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~ 128 (217)
T d2flia1 50 VVASMRKHSKLVFDCHLMVVDPER-YVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLD 128 (217)
T ss_dssp HHHHHHTTCCSEEEEEEESSSGGG-GHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTT
T ss_pred HHHHHHhcCCCceEeEEEecCHHH-HHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHh
Confidence 567888889999999999987654 7899999999999998643 2578888999999887643
Q ss_pred --------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 --------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 --------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
...+.-+.++++.++ ..+++|.+.|||. .+.+..+..+|||.+++||.+.-
T Consensus 129 ~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~ 201 (217)
T d2flia1 129 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 201 (217)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred hcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhC
Confidence 113334555555432 2368999999995 55799999999999999987553
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.92 E-value=5.8e-05 Score=64.38 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------ 116 (300)
+.+..+|+.++.|+-.+=+. .++.++......|+++|.+-....+ .++++.+++.|..++.-
T Consensus 93 ~dl~~v~~~~~~PiLrKDFI--id~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~ 170 (247)
T d1a53a_ 93 ETLRKIASSVSIPILMKDFI--VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALR 170 (247)
T ss_dssp HHHHHHHHHCCSCEEEESCC--CSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHH
T ss_pred HHHHHHHhccccceeecccc--cChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHh
Confidence 45667777788887544322 2466788888889999876544332 34555556667665532
Q ss_pred ------------cCh----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 ------------DGL----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 ------------~~~----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+ +...-++...+. .++.+|+.+||.+.+|+..+..+|+|||.+|+.++-+++
T Consensus 171 ~~a~iIGINnRnL~t~~vd~~~~~~L~~~ip-~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d 240 (247)
T d1a53a_ 171 IGARFIGINSRDLETLEINKENQRKLISMIP-SNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPE 240 (247)
T ss_dssp TTCSEEEEESBCTTTCCBCHHHHHHHHHHSC-TTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCCCeEeeeccChhhhhhhhhHHHHHHhhCC-CCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCc
Confidence 011 112222333333 268999999999999999999999999999999998653
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=0.00013 Score=60.81 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=94.3
Q ss_pred HHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHH
Q 022271 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (300)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~ 104 (300)
+++.++.++ |+.++--. +.+++.+ +.|+++++. .+.-+|++-+. +.++++.+++.|++++..- |. .+++++
T Consensus 30 ~~~~al~~~-Gi~~iEit-l~~~~a~-~~I~~l~~~~p~~~vGaGTV~---~~~~~~~a~~aGa~FivSP-~~-~~~v~~ 101 (212)
T d1vhca_ 30 PLADTLAKN-GLSVAEIT-FRSEAAA-DAIRLLRANRPDFLIAAGTVL---TAEQVVLAKSSGADFVVTP-GL-NPKIVK 101 (212)
T ss_dssp HHHHHHHHT-TCCEEEEE-TTSTTHH-HHHHHHHHHCTTCEEEEESCC---SHHHHHHHHHHTCSEEECS-SC-CHHHHH
T ss_pred HHHHHHHHC-CCCEEEEe-CCChhHH-HHHHHHHhcCCCceEeeeecc---cHHHHHHHHhhCCcEEECC-CC-CHHHHH
Confidence 566666664 57777432 4566554 567777654 46667877665 6789999999999999776 44 467888
Q ss_pred HHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 105 EAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 105 ~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
.+++.++.+++. .+ -..++..+..-+ .++|+++.|||. .+.+..+|++|+.+
T Consensus 102 ~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~--p~~~~~ptGGV~-~~N~~~yl~~g~v~ 178 (212)
T d1vhca_ 102 LCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPY--AQLQIMPTGGIG-LHNIRDYLAIPNIV 178 (212)
T ss_dssp HHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTT--TTCEEEEBSSCC-TTTHHHHHTSTTBC
T ss_pred HHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccccchHHHHHHHhccc--cCCeEEecCCCC-HHHHHHHHhCCCEE
Confidence 888888887764 11 233455554444 379999999995 57999999999999
Q ss_pred EEeccccc
Q 022271 160 ICLGTRFV 167 (300)
Q Consensus 160 V~~GT~fl 167 (300)
+.+||.+.
T Consensus 179 ~~~Gs~l~ 186 (212)
T d1vhca_ 179 ACGGSWFV 186 (212)
T ss_dssp CEEECGGG
T ss_pred EEEChhhC
Confidence 99998775
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00013 Score=60.77 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.+..+ ||+.++--. +.+|+. .+.|+++++. .+.-+|++-+. +.++++.+.+.|++++..- |. .++++
T Consensus 30 ~~~~~al~~-~Gi~~iEit-l~tp~a-~~~I~~l~~~~p~~~vGaGTV~---~~~~~~~a~~aGa~FivSP-~~-~~~v~ 101 (213)
T d1wbha1 30 VPMAKALVA-GGVRVLNVT-LRTECA-VDAIRAIAKEVPEAIVGAGTVL---NPQQLAEVTEAGAQFAISP-GL-TEPLL 101 (213)
T ss_dssp HHHHHHHHH-TTCCEEEEE-SCSTTH-HHHHHHHHHHCTTSEEEEESCC---SHHHHHHHHHHTCSCEEES-SC-CHHHH
T ss_pred HHHHHHHHH-CCCCEEEEe-CCChhH-HHHHHHHHHHCCCCeeeccccc---cHHHHHHHHHCCCcEEECC-CC-CHHHH
Confidence 366666555 557776432 445544 4567777664 56667777664 6889999999999999876 44 56788
Q ss_pred HHHHHCCCeEeec--------------------c-----ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ--------------------D-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~-----~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.++.+++. . +-..++..+..-+ .++++++.|||. .+.+..+|.+|+.
T Consensus 102 ~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~~~ptGGV~-~~n~~~yl~~g~v 178 (213)
T d1wbha1 102 KAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPF--SQVRFCPTGGIS-PANYRDYLALKSV 178 (213)
T ss_dssp HHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHTSTTB
T ss_pred HHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchhcChHHHHHHhcCcc--cCCceeeeCCCC-HHHHHHHHhCCCE
Confidence 8888888888764 1 1234555555544 379999999997 5799999999999
Q ss_pred EEEeccccc
Q 022271 159 GICLGTRFV 167 (300)
Q Consensus 159 gV~~GT~fl 167 (300)
++.+||.+.
T Consensus 179 ~~~~Gs~l~ 187 (213)
T d1wbha1 179 LCIGGSWLV 187 (213)
T ss_dssp SCEEEGGGS
T ss_pred EEEEChhhC
Confidence 998888665
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.72 E-value=7e-05 Score=63.11 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=36.1
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++||+.+|||.++.++..++..|+|||.+||+++-+++
T Consensus 173 ~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d 210 (226)
T d1w0ma_ 173 EVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKD 210 (226)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSS
T ss_pred CceEEEecCcCChHHHHHHhcCCCCEEEechheecCCC
Confidence 79999999999999999999999999999999997755
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.66 E-value=3.8e-05 Score=64.37 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=47.8
Q ss_pred hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 120 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 120 ~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+.++.++.+.- ..++|++++|||.++.|++.++.+|||||.+||...-+.. +...-++++.
T Consensus 176 ~~l~~~v~~~g-~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~d---P~~~a~A~~~ 236 (254)
T d1znna1 176 VEVLREIKRLG-RLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSEN---PEKYARAIVE 236 (254)
T ss_dssp HHHHHHHHHHT-SCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSC---HHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCC---HHHHHHHHHH
Confidence 45666776542 2379999999999999999999999999999999887753 4455555554
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.63 E-value=0.00011 Score=62.11 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 124 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 124 ~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
..+++.+ .++||+..+||+|++++.++.. +||||++||+|.
T Consensus 179 ~~~~k~~--~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaiv 219 (231)
T d2f6ua1 179 AEVKKVL--DKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY 219 (231)
T ss_dssp HHHHHHC--SSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred HHHHHhc--CCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHh
Confidence 3344443 3699999999999999988775 899999999984
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.63 E-value=6.1e-05 Score=67.37 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhc--CCcEEeeeecCCC-------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-
Q 022271 50 YLRDLIRKTRSLT--ERPFGVGVVLAFP-------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ- 116 (300)
Q Consensus 50 ~l~~~i~~~r~~~--~~P~gvnl~~~~~-------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~- 116 (300)
-+.+.++.+|+.. +.|+++.+-.... . ...+..+.+.+++.+.++.|..... .. ..+-.-...
T Consensus 201 f~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~-~~---~~~~~~~~~~ 276 (340)
T d1djqa1 201 FWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEW-GE---DAGPSRFYQQ 276 (340)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTG-GG---TSCCTTTCCT
T ss_pred HHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccc-cc---cccccccCCc
Confidence 3566788888876 4577777654321 1 2234566678999998887753110 00 011000000
Q ss_pred cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 117 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 117 ~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.....+...+++.+ ++|||+.|||.|++.+.++|..| ||.|.+|+.|++-++
T Consensus 277 ~~~~~~~~~ik~~~---~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPd 329 (340)
T d1djqa1 277 GHTIPWVKLVKQVS---KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPF 329 (340)
T ss_dssp TTTHHHHHHHHTTC---SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTT
T ss_pred cccHHHHHHHHHHc---CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCcc
Confidence 12344556677666 79999999999999999999999 999999999998754
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.61 E-value=0.00025 Score=60.44 Aligned_cols=153 Identities=25% Similarity=0.321 Sum_probs=93.5
Q ss_pred HHHHHHHhCCceEE--ecCC-CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC-------
Q 022271 26 ELVAAVANAGGLGL--LRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------- 95 (300)
Q Consensus 26 ~la~avs~aGglG~--i~~~-~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~------- 95 (300)
++|...++.|.=-. +-.. .........+.++++.+.+..|+-+.--. ...+.++.+++.|++-|.++.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~~~pi~vgGGI--rs~e~~~~ll~~Ga~kVii~s~~~~n~~ 111 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGV--RSLEDARKLLLSGADKVSVNSAAVRRPE 111 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSC--CSHHHHHHHHHHTCSEEEECHHHHHCTH
T ss_pred HHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhccCcchheeccc--cCHHHHHHHHHcCCCEEEECchhhhCHH
Confidence 67777777764222 2111 11233445566777777666676553221 234555555555555443311
Q ss_pred --------------------------------------CCCcHHHHHHHHHCCCeE--eec---cC-----hhchHHHHH
Q 022271 96 --------------------------------------GEYSEELVLEAHSAGVKV--VPQ---DG-----LISLLPMVV 127 (300)
Q Consensus 96 --------------------------------------G~~~~~~v~~~~~~G~~v--~~~---~~-----~~~ll~~v~ 127 (300)
+..+.+++..+.+.|+.- +.. +| .+.++..+.
T Consensus 112 ~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~ 191 (251)
T d1ka9f_ 112 LIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVA 191 (251)
T ss_dssp HHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHH
T ss_pred HHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHH
Confidence 012345555555554322 111 22 467888888
Q ss_pred HhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 128 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 128 ~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
+.. ++|+|++||+++-+|+.+++..|++||.+|++|....- .-+..|+.+.+.
T Consensus 192 ~~~---~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~--~~~~~k~~l~~~ 244 (251)
T d1ka9f_ 192 EAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEI--PIPKLKRYLAEK 244 (251)
T ss_dssp HHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSS--CHHHHHHHHHHT
T ss_pred hhc---ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCC--CHHHHHHHHHHC
Confidence 776 79999999999999999999999999999999875432 235567766653
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=0.00047 Score=58.76 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCceEEe--cC-CCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC------
Q 022271 25 PELVAAVANAGGLGLL--RA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------ 95 (300)
Q Consensus 25 ~~la~avs~aGglG~i--~~-~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~------ 95 (300)
.+++..-++.|.=.+. -. +.........+.++++.+.+..|+-+.--. ...+.++.+++.|++=|.++.
T Consensus 33 ~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~vgGGI--r~~e~i~~~l~~Ga~kviigs~~~~n~ 110 (253)
T d1thfd_ 33 VELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGI--HDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSC--CSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred HHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhccCccceeeccc--ccchhhhhHHhcCCCEEEEChHHhhCh
Confidence 3788888888753222 11 111233455567778777777787654222 234444455555544333211
Q ss_pred ---------------------------------C-C-----CcHHHHHHHHHCCCe--Eeec---cC-----hhchHHHH
Q 022271 96 ---------------------------------G-E-----YSEELVLEAHSAGVK--VVPQ---DG-----LISLLPMV 126 (300)
Q Consensus 96 ---------------------------------G-~-----~~~~~v~~~~~~G~~--v~~~---~~-----~~~ll~~v 126 (300)
+ . .+.+++.++.+.|.. ++.+ +| .+.++..+
T Consensus 111 ~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i 190 (253)
T d1thfd_ 111 SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFV 190 (253)
T ss_dssp HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHH
T ss_pred HHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccc
Confidence 0 0 124566666665543 2221 22 45678877
Q ss_pred HHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 127 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
.+.. ++||+++||+++.+|+.+++.+|++||.+|++|....- ..+..|+.+.+.
T Consensus 191 ~~~~---~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~--~~~~~k~~l~~~ 244 (253)
T d1thfd_ 191 RPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREI--DVRELKEYLKKH 244 (253)
T ss_dssp GGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCS--CHHHHHHHHHHT
T ss_pred cccc---cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCC--CHHHHHHHHHHC
Confidence 6665 79999999999999999999999999999999865432 345667776654
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.55 E-value=0.00031 Score=58.83 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC---CcHHHHHHHHHCCCeEeec-------------
Q 022271 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 53 ~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~---~~~~~v~~~~~~G~~v~~~------------- 116 (300)
+.++++|+.++.|+=+-|+...|. ..++...+.+++.|.++.-. +...++..+++.|+++...
T Consensus 49 ~~i~~i~~~~~~~~dvHLMv~~p~-~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~ 127 (220)
T d1h1ya_ 49 PVIQSLRKHTKAYLDCHLMVTNPS-DYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPL 127 (220)
T ss_dssp HHHHHHHTTCCSEEEEEEESSCGG-GGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHH
T ss_pred hhhhhhhhhcchhhhhHHHhcchh-hhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHH
Confidence 467778888999999999987664 56888889999999997632 2356778888888876532
Q ss_pred -------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 -------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 -------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++.. .+++|.+.|||..- .+.....+|||.+++||.+...
T Consensus 128 l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~--~~~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if~~ 202 (220)
T d1h1ya_ 128 VEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLGPS-TIDVAASAGANCIVAGSSIFGA 202 (220)
T ss_dssp HHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCSTT-THHHHHHHTCCEEEESHHHHTS
T ss_pred HhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcC--CCceEEEEecCCHH-HHHHHHHCCCCEEEECHHHHCC
Confidence 11233344444433 36899999999765 7888999999999999986543
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.50 E-value=0.00064 Score=57.21 Aligned_cols=114 Identities=13% Similarity=0.250 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC----CcHHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE----YSEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~----~~~~~v~~~~~~G~~v~~~------------- 116 (300)
.++.+|+.++.|+=+-|+...| ...++.+.+.|++.|++++-. .+.+++..+++.|+++.-.
T Consensus 59 ~v~~i~~~t~~~~dvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~ 137 (230)
T d1rpxa_ 59 VVDSLRPITDLPLDVHLMIVEP-DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYV 137 (230)
T ss_dssp HHHHHGGGCCSCEEEEEESSSH-HHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTT
T ss_pred HHhhhhhccCceeeeeeeecch-hhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH
Confidence 5777888899999999998765 677899999999999998632 1467899999999887643
Q ss_pred ----------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ----------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ----------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++... ..++.|-+.|||..- .+..+..+|||.+++||.+.-.
T Consensus 138 l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~-~i~~l~~~Gad~~V~GS~if~~ 213 (230)
T d1rpxa_ 138 LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK-NAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTT-THHHHHHHTCCEEEESHHHHTS
T ss_pred HhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHHCC
Confidence 113344444444332 236889999999654 7888999999999999887654
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.48 E-value=0.00045 Score=58.94 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=59.7
Q ss_pred cHHHHHHHHHCCCe--Eeec---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVK--VVPQ---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~--v~~~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
+.++++.+.+.|+. ++.. +| .+.++.++.+.. ++||+++|||++-+|+.++..+|++||.+||.|..
T Consensus 155 ~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~---~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~ 231 (252)
T d1h5ya_ 155 AVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 231 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHc
Confidence 45677777666532 2221 22 467888888776 79999999999999999999999999999999976
Q ss_pred CcccCCCHHHHHHHHc
Q 022271 169 SEESYAHPEYKRKLVE 184 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~ 184 (300)
..- .-...|+.+.+
T Consensus 232 ~~~--~~~~lk~~l~~ 245 (252)
T d1h5ya_ 232 RVL--SIAQVKRYLKE 245 (252)
T ss_dssp TSS--CHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHH
Confidence 532 23456666554
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.46 E-value=0.00018 Score=60.30 Aligned_cols=38 Identities=18% Similarity=0.466 Sum_probs=35.9
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
++||+.+|||.++.++..++.+|+|||.+||+++-+++
T Consensus 175 ~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d 212 (224)
T d1hg3a_ 175 EVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD 212 (224)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred ccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcC
Confidence 79999999999999999999999999999999998754
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00056 Score=58.23 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------- 116 (300)
.++.+|+.++.|+--+=|. -++.++......|+++|.+-..... .++++..+..|..++.-
T Consensus 99 ~l~~v~~~~~~PiLrKDFI--id~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~ 176 (254)
T d1piia2 99 FLPIVSQIAPQPILCKDFI--IDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIAL 176 (254)
T ss_dssp HHHHHHHHCCSCEEEESCC--CSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHhccccccchhccc--CcHHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhh
Confidence 4666777777886433222 2467788888899998876554443 34555566677776532
Q ss_pred -----------cCh----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCcc
Q 022271 117 -----------DGL----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 117 -----------~~~----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
..+ +....++...+. .++.+|+.+||.+.+|+.. +..|+|+|.+|+.++.++.
T Consensus 177 ~a~iIGINnRnL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~~~d 244 (254)
T d1piia2 177 GAKVVGINNRDLRDLSIDLNRTRELAPKLG-HNVTVISESGINTYAQVRE-LSHFANGFLIGSALMAHDD 244 (254)
T ss_dssp TCSEEEEESEETTTTEECTHHHHHHHHHHC-TTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHTCSC
T ss_pred cccccCccccchhhhhhhhHHHHHHHHhCC-CCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhCCCC
Confidence 001 112222333332 2678999999999999876 5789999999999998764
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00014 Score=64.76 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcC--CcEEeeeecCCC------c---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccC
Q 022271 50 YLRDLIRKTRSLTE--RPFGVGVVLAFP------H---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDG 118 (300)
Q Consensus 50 ~l~~~i~~~r~~~~--~P~gvnl~~~~~------~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~ 118 (300)
-+.+.|+.+|+..+ .|+++-+..... . .+.++.+.+.+++.+.++.|.... .+. ...... . .+
T Consensus 193 f~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~-~~~---~~~~~~-~-~~ 266 (330)
T d1ps9a1 193 FAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEA-RIP---TIATPV-P-RG 266 (330)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTC-SSC---SSSTTS-C-TT
T ss_pred HHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccc-ccc---ccCCCC-c-ch
Confidence 46677888888754 566665554321 1 345667777899999887654210 000 000000 0 11
Q ss_pred -hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 119 -LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 119 -~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
...+..++++.+ ++|||+.|+|.|++.+.++|.-| ||.|.||+.|++-++
T Consensus 267 ~~~~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~ 318 (330)
T d1ps9a1 267 AFSWVTRKLKGHV---SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAE 318 (330)
T ss_dssp TTHHHHHHHTTSC---SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred hHHHHHHHHHhhC---CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChh
Confidence 223344555554 79999999999999999999998 999999999998754
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.41 E-value=0.00067 Score=56.46 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCceEEecCCCCCCHHHHHHHHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHH
Q 022271 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (300)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~~~l~~~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v 103 (300)
.+++.++.++ |+.++--. +.+|+.+ +.|+.+|+. .+..+|++-+. +.++++.+.+.|++++..- |. .++++
T Consensus 32 ~~~~~al~~~-Gi~~iEit-l~~p~a~-~~i~~l~~~~p~~~vGaGTV~---~~~~~~~a~~aGa~FivsP-~~-~~~v~ 103 (216)
T d1mxsa_ 32 LPLADALAAG-GIRTLEVT-LRSQHGL-KAIQVLREQRPELCVGAGTVL---DRSMFAAVEAAGAQFVVTP-GI-TEDIL 103 (216)
T ss_dssp HHHHHHHHHT-TCCEEEEE-SSSTHHH-HHHHHHHHHCTTSEEEEECCC---SHHHHHHHHHHTCSSEECS-SC-CHHHH
T ss_pred HHHHHHHHHC-CCCEEEEe-CCChhHH-HHHHHHHHhCCCcceeeeeee---cHHHHHHHHhCCCCEEECC-CC-cHHHH
Confidence 3667666664 57776432 4577654 677887765 46668887765 5788999999999998776 33 47888
Q ss_pred HHHHHCCCeEeec--------------------cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCc
Q 022271 104 LEAHSAGVKVVPQ--------------------DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 158 (300)
Q Consensus 104 ~~~~~~G~~v~~~--------------------~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAd 158 (300)
+.+++.|+.+++. .+ -..++..+..-+ .++++++.|||. .+.+..+|.+|+-
T Consensus 104 ~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g~~~ikal~~p~--p~~~fiptGGV~-~~n~~~yl~~~~v 180 (216)
T d1mxsa_ 104 EAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPF--GDIRFCPTGGVN-PANVRNYMALPNV 180 (216)
T ss_dssp HHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTT--TTCEEEEBSSCC-TTTHHHHHHSTTB
T ss_pred HHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccccccccHHHHHHHhccc--ccCceeccCCCC-HHHHHHHHhcCCe
Confidence 8888888888764 11 123344444333 379999999996 5699999999998
Q ss_pred EEEecccccc
Q 022271 159 GICLGTRFVA 168 (300)
Q Consensus 159 gV~~GT~fl~ 168 (300)
.+..||..+-
T Consensus 181 ~avggs~l~~ 190 (216)
T d1mxsa_ 181 MCVGTTWMLD 190 (216)
T ss_dssp CCEEECTTSC
T ss_pred EEEEccccCC
Confidence 8877765554
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=97.39 E-value=0.00038 Score=58.57 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.7
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
++..+++.+ .++||+..+||++++++.++. .|||||++||++.-.
T Consensus 171 ~~~~v~~~~--~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~ 215 (229)
T d1viza_ 171 AVKKTKAVL--ETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYED 215 (229)
T ss_dssp HHHHHHHTC--SSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHC
T ss_pred hHHHHHhhc--cCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhh
Confidence 344444444 379999999999999998865 799999999998643
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.33 E-value=0.00032 Score=59.31 Aligned_cols=48 Identities=29% Similarity=0.471 Sum_probs=41.2
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC---CCcEEEeccccccC
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL---GAQGICLGTRFVAS 169 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l---GAdgV~~GT~fl~t 169 (300)
.+.++..+.+.. ++||+++|||++-+|+.+.-.+ |++||.+||+|..-
T Consensus 177 d~~l~~~i~~~~---~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g 227 (239)
T d1vzwa1 177 NLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 227 (239)
T ss_dssp CHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred cchhhhhhhhcc---CceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCC
Confidence 467888887776 7999999999999999988665 99999999998653
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.30 E-value=0.00078 Score=56.46 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=87.6
Q ss_pred ccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEecC----CCCCCHHHHHHHHHHHHhh---cCCcEEeeeecCCCc
Q 022271 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA----PDWEAPDYLRDLIRKTRSL---TERPFGVGVVLAFPH 76 (300)
Q Consensus 4 ~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~----~~~~~~~~l~~~i~~~r~~---~~~P~gvnl~~~~~~ 76 (300)
.+++++ |.|+...+. .-..-+++.++..+| +-++-- ....+.+++.+..++++++ .+.++-||=
T Consensus 14 ~~~~~l-y~i~~~~~~-~~~~~~~v~~al~~G-v~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liInd------ 84 (226)
T d2tpsa_ 14 KELLSV-YFIMGSNNT-KADPVTVVQKALKGG-ATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVND------ 84 (226)
T ss_dssp HHHTTE-EEEECGGGC-SSCHHHHHHHHHHHT-CSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEES------
T ss_pred HhhCCE-EEEECcccc-ccCHHHHHHHHHHCC-CCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEcC------
Confidence 344554 778776665 223347777766655 666621 1124667776666666664 345555541
Q ss_pred HHHHHHHHHcCCcEE---------------------EEcCCCCcHHHHHHHHHCCCeEeec--------------cChhc
Q 022271 77 NENIKAILSEKVAVL---------------------QVSWGEYSEELVLEAHSAGVKVVPQ--------------DGLIS 121 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i---------------------~~~~G~~~~~~v~~~~~~G~~v~~~--------------~~~~~ 121 (300)
.++.+.+.+++.| ..++.. .. -+....+.|+..+.. .....
T Consensus 85 --~~~lA~~~~adGvHl~~~d~~~~~~r~~~~~~iig~S~h~-~~-e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~ 160 (226)
T d2tpsa_ 85 --DVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHT-MS-EVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVS 160 (226)
T ss_dssp --CHHHHHHHTCSEEEECTTSSCHHHHHHHHTTSEEEEEECS-HH-HHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTH
T ss_pred --CHHHHhhccCCEEEeccccchhhhhhhcccceeeeeeccc-hH-HHHHHHhCcCCeEEEecccccccccccccccccc
Confidence 1233333344444 333332 22 223333344443322 11234
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
++..+.... .++||+|-||| +.+.+..++..||+||.+.+.++..+
T Consensus 161 ~~~~~~~~~--~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~a~ 206 (226)
T d2tpsa_ 161 LIEAVRRQG--ISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQAE 206 (226)
T ss_dssp HHHHHHHTT--CCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred hhHHHHHhc--CCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhcCC
Confidence 555555421 27999999999 88999999999999999999998754
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.29 E-value=0.00051 Score=56.65 Aligned_cols=150 Identities=22% Similarity=0.265 Sum_probs=87.9
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEec--CCCCCCHHHHHHHHHHHHhhc---CCcEEeeeecCCCcH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLR--APDWEAPDYLRDLIRKTRSLT---ERPFGVGVVLAFPHN 77 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~--~~~~~~~~~l~~~i~~~r~~~---~~P~gvnl~~~~~~~ 77 (300)
+.+.|.+ |.|-.--+ .+..+.+..+..+| +.++- .- ..+.+++.+..+++++.+ +.++-||=
T Consensus 2 ~~~~l~l-y~ITd~~~---~~~~~~v~~~l~~G-v~~vqlR~k-~~~~~e~~~~a~~l~~i~~~~~~~liind------- 68 (206)
T d1xi3a_ 2 LRNKLKL-YVITDRRL---KPEVESVREALEGG-ATAIQMRIK-NAPTREMYEIGKTLRQLTREYDALFFVDD------- 68 (206)
T ss_dssp HHHHTSE-EEECCTTT---SCHHHHHHHHHHTT-CSEEEECCC-SCCHHHHHHHHHHHHHHHHHTTCEEEEES-------
T ss_pred cccCCeE-EEEeCCcc---cCHHHHHHHHHHcC-CCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCeEEech-------
Confidence 3444543 55553222 34567777777766 66652 21 246667777777776653 44554442
Q ss_pred HHHHHHHHcCCcEEEEcCCCCc-------------------HHHHHHHHHCCCeEeec-------------cChhchHHH
Q 022271 78 ENIKAILSEKVAVLQVSWGEYS-------------------EELVLEAHSAGVKVVPQ-------------DGLISLLPM 125 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~-------------------~~~v~~~~~~G~~v~~~-------------~~~~~ll~~ 125 (300)
.++.+.+.+++.|-+.....+ .+-+....+.|+..+.. ...+..+.+
T Consensus 69 -~~~lA~~~~adGvHl~~~~~~~~~~~~~~~~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~ 147 (206)
T d1xi3a_ 69 -RVDVALAVDADGVQLGPEDMPIEVAKEIAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRK 147 (206)
T ss_dssp -CHHHHHHHTCSEEEECTTSCCHHHHHHHCTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHH
T ss_pred -hHHHHHhccCceEeeccccccHhhhhhcccccccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHH
Confidence 234444445554433221111 11122223334443321 114567777
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
+.+.. ++||+|-||| +...+..++..||+||.+.+.++.++
T Consensus 148 ~~~~~---~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~~ 188 (206)
T d1xi3a_ 148 IVESV---KIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGAE 188 (206)
T ss_dssp HHHHC---SSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTSS
T ss_pred HHHhc---CCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCCC
Confidence 77765 7999999999 77789999999999999999999764
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00097 Score=56.75 Aligned_cols=138 Identities=13% Similarity=0.075 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCc--eEEecCCCC--CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC---
Q 022271 25 PELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--- 97 (300)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~--~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~--- 97 (300)
.++|....++|. +-++....+ -+.+ .++.+|+.++.|+-.+=+. .++.++......|++.|.+-...
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~----dl~~v~~~~~iPvLrKDFI--id~~QI~ea~~~GADaVLLIaall~~ 141 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPHRFGGSLL----DLKRVREAVDLPLLRKDFV--VDPFMLEEARAFGASAALLIVALLGE 141 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHH----HHHHHHHHCCSCEEEESCC--CSHHHHHHHHHTTCSEEEEEHHHHGG
T ss_pred HHHHHHHHhcCCceEEEEcCcccccccHH----HHHHHHHHcCCCcccCCcc--ccHHHHHHHHhccchHHHHHHHHHHH
Confidence 567777667664 333332212 1343 4567777788887554332 24677888888899988764322
Q ss_pred CcHHHHHHHHHCCCeEeec------------------------c-------C-hhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 98 YSEELVLEAHSAGVKVVPQ------------------------D-------G-LISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 98 ~~~~~v~~~~~~G~~v~~~------------------------~-------~-~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
.-.++++.++..|..++.- . . +..+.+.+.+.- .++.+|+.+||.+
T Consensus 142 ~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~--~~~i~IsESGI~~ 219 (254)
T d1vc4a_ 142 LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRG--FGGVLVAESGYSR 219 (254)
T ss_dssp GHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTT--CCSEEEEESCCCS
T ss_pred HHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccC--CCCEEEEccCCCC
Confidence 1234555566666665532 0 0 112222232221 2678999999999
Q ss_pred hHHHHHHHHCCCcEEEeccccccCcc
Q 022271 146 ARGYVAALSLGAQGICLGTRFVASEE 171 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~fl~t~E 171 (300)
.+|+.. +..|+|+|.+|+.++.++.
T Consensus 220 ~~dv~~-l~~g~davLIGesLm~~~d 244 (254)
T d1vc4a_ 220 KEELKA-LEGLFDAVLIGTSLMRAPD 244 (254)
T ss_dssp HHHHHT-TTTTCSEEEECHHHHTSSC
T ss_pred HHHHHH-HHcCCCEEEEChhhcCCCC
Confidence 999865 5789999999999997753
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.17 E-value=0.0011 Score=56.05 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=50.3
Q ss_pred cHHHHHHHHHCCCeE--eec---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC------CcEEEe
Q 022271 99 SEELVLEAHSAGVKV--VPQ---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG------AQGICL 162 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v--~~~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG------AdgV~~ 162 (300)
+.++++++.+.|+.= +.. +| .+.++..+.+.. ++||+++||+++-+|+.++..+| ++||.+
T Consensus 146 ~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~---~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gviv 222 (241)
T d1qo2a_ 146 PVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred hhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccC---CceEEEECCCCCHHHHHHHHHccccccCCEeeEEE
Confidence 356666666554332 221 12 467888888877 79999999999999999998765 899999
Q ss_pred cccccc
Q 022271 163 GTRFVA 168 (300)
Q Consensus 163 GT~fl~ 168 (300)
||+|..
T Consensus 223 G~al~~ 228 (241)
T d1qo2a_ 223 GRAFLE 228 (241)
T ss_dssp CHHHHT
T ss_pred HHHHHC
Confidence 999953
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.17 E-value=0.0014 Score=54.67 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC---C-cHHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---Y-SEELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~---~-~~~~v~~~~~~G~~v~~~------------- 116 (300)
.++.+|..++.|+=+-||...|. .+++.+.+.|++.+++++-. + ....+..+++.|+.+.-.
T Consensus 51 ~~~~i~~~t~~~~dvHLMv~~P~-~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~ 129 (221)
T d1tqja_ 51 IVDAIRPLTKKTLDVHLMIVEPE-KYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYV 129 (221)
T ss_dssp HHHHHGGGCCSEEEEEEESSSGG-GTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTT
T ss_pred hHHhhhhccCcceeeeEEEeCHH-HHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHH
Confidence 67778888999999999998774 47899999999999998742 1 256788889999877643
Q ss_pred ----------------------cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 117 ----------------------DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 117 ----------------------~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
...+.-+.++++... ..+++|.+.|||..- -+..+..+|||.+++||.+.-
T Consensus 130 l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~-~i~~l~~~Gad~~V~GS~if~ 204 (221)
T d1tqja_ 130 LPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN-NTWQVLEAGANAIVAGSAVFN 204 (221)
T ss_dssp GGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTT-TTHHHHHHTCCEEEESHHHHT
T ss_pred HhhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHhC
Confidence 112233444444332 236889999999654 678888999999999987654
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.0025 Score=53.94 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc----HHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~----~~~v~~~~~~G~~v~~~------------- 116 (300)
.++++|+.++.|+--+=|.- ++.++......|+++|.+-....+ .++++.++..|..++.-
T Consensus 92 ~l~~vr~~~~~PiLrKDFIi--d~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~ 169 (251)
T d1i4na_ 92 FVRAARNLTCRPILAKDFYI--DTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV 169 (251)
T ss_dssp HHHHHHTTCCSCEEEECCCC--STHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT
T ss_pred HHHHHhhcccCchhhhhhhh--CHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcc
Confidence 46678887788875443322 345677777788888866443332 24444455566665532
Q ss_pred ------------cCh----hchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccCc
Q 022271 117 ------------DGL----ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 117 ------------~~~----~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
..+ +....++...+. .+..+|+.+||.+.+|+.. +..|+|+|.+|+.++.+.
T Consensus 170 ~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IaESGI~~~~d~~~-l~~G~davLIG~sLm~~~ 237 (251)
T d1i4na_ 170 IRPKIIGINTRDLDTFEIKKNVLWELLPLVP-DDTVVVAESGIKDPRELKD-LRGKVNAVLVGTSIMKAE 237 (251)
T ss_dssp CCCSEEEEECBCTTTCCBCTTHHHHHGGGSC-TTSEEEEESCCCCGGGHHH-HTTTCSEEEECHHHHHCS
T ss_pred cccceeeeeecchhccchhhhHHHHHHhhCC-CCCEEEEcCCCCCHHHHHH-HHhCCCEEEEChHHhCCC
Confidence 001 112223333332 2688999999999999865 578999999999999875
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0054 Score=50.21 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHhC--CceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANA--GGLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~a--GglG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++.+=+..+.++ -.+||+... -+.++++.++..+.++ ....-|.++...+..+..+.+.+.++++|.++
T Consensus 8 Git~~~da~~~~~~gad~iGfI~~~~SpR~Vs~~~a~~i~~~~~---~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlh- 83 (205)
T d1nsja_ 8 GITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELP---PFVFRVGVFVNEEPEKILDVASYVQLNAVQLH- 83 (205)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC-
T ss_pred CCCcHHHHHHHHhCCCCEEeEeccCCCCCccCHHHHHHHHhhhc---ccceeeccccccHHHHHHhhhhhccccchhcc-
Confidence 56766666665554 469998532 2456776665544333 34566778887776777777788899999999
Q ss_pred CCCcHHHHHHHHHCCCeEeec---------------------------c-C-----hhchHHHHHHhhCCCCCcEEEccC
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ---------------------------D-G-----LISLLPMVVDLIGDRDIPIIAAGG 142 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~---------------------------~-~-----~~~ll~~v~~~~~~~~iPViaaGG 142 (300)
|..+.+.+..++.....+... . | .+.++..+... ..|++.|||
T Consensus 84 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~~----~~~~~LAGG 159 (205)
T d1nsja_ 84 GEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDR----FRYLVLSGG 159 (205)
T ss_dssp SCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGG----SSCEEEESS
T ss_pred chhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhcccchhc----ccceeeecC
Confidence 555677777776544332221 0 0 23344433322 358999999
Q ss_pred CCChHHHHHHHH-CCCcEEEecccc
Q 022271 143 IVDARGYVAALS-LGAQGICLGTRF 166 (300)
Q Consensus 143 I~~g~~v~aal~-lGAdgV~~GT~f 166 (300)
| +++.+..++. .++.||=+-|..
T Consensus 160 l-~~~Nv~~ai~~~~p~gvDvsSgv 183 (205)
T d1nsja_ 160 L-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp C-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred C-CHHHHHHHHHHhCCCEEEEcCcc
Confidence 9 5678888886 788888876654
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0032 Score=50.89 Aligned_cols=114 Identities=9% Similarity=-0.006 Sum_probs=76.3
Q ss_pred HHHHHHhh-cCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCc---HHHHHHHHHCCCeEeec-------------
Q 022271 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQ------------- 116 (300)
Q Consensus 54 ~i~~~r~~-~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~---~~~v~~~~~~G~~v~~~------------- 116 (300)
.++++|+. ++.++-..+...+......+.+.+.|+++++++.-..+ ..+++..++.|..+...
T Consensus 44 ~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 123 (213)
T d1q6oa_ 44 AVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQW 123 (213)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHH
T ss_pred HHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHH
Confidence 46666665 45677666666666566677888999999998742212 33455566777776432
Q ss_pred ---------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 ---------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ---------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
......+..+++... .+.++...||+ +..++..++..|||.+++|++...+
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~-~~~~i~~~gGi-~~~~~~~~~~~Gad~iVVGr~I~~a 195 (213)
T d1q6oa_ 124 RDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDA 195 (213)
T ss_dssp HHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred HHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhc-cCceEecCCCc-CcCCHHHHHHcCCCEEEEChhhcCC
Confidence 001123344444322 36888888887 5789999999999999999998765
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.91 E-value=0.0014 Score=57.73 Aligned_cols=82 Identities=24% Similarity=0.250 Sum_probs=63.9
Q ss_pred cHHHHHHHHHCCCeEe--ec---cC-----hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH-CCCcEEEeccccc
Q 022271 99 SEELVLEAHSAGVKVV--PQ---DG-----LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 167 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~--~~---~~-----~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~-lGAdgV~~GT~fl 167 (300)
..++++.+.+.|+-=+ .. +| .+.++.++.+.+ ++|||++||+++.+|+.+++. .|++||.+|+.|-
T Consensus 222 l~~~i~~~~~~G~GEIlltdIdrDGt~~G~D~el~~~i~~~~---~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~ 298 (323)
T d1jvna1 222 VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAV---KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFH 298 (323)
T ss_dssp HHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC---SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHH
T ss_pred HHHHhhhhhccCcceeEEEeecccccccccchhHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHH
Confidence 4688888888765533 22 23 568999998887 899999999999999999886 5899999999998
Q ss_pred cCcccCCCHHHHHHHHcC
Q 022271 168 ASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 168 ~t~Es~~~~~~k~~i~~a 185 (300)
...- .-...|+.|.+.
T Consensus 299 ~~~~--si~elK~~L~~~ 314 (323)
T d1jvna1 299 RGEF--TVNDVKEYLLEH 314 (323)
T ss_dssp TTSC--CHHHHHHHHHHT
T ss_pred cCCC--CHHHHHHHHHHC
Confidence 7654 235577777764
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0084 Score=48.82 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHHhC--CceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVANA--GGLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~a--GglG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++.+=+..+.++ -.+||+... -+.++++.++.++.++ +--|.++.....++..+.+.+.++++|.++.
T Consensus 7 GIt~~~d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~-----~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlHG 81 (198)
T d1piia1 7 GLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAP-----LQYVGVFRNHDIADVVDKAKVLSLAAVQLHG 81 (198)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCC-----CEEEEEESSCCHHHHHHHHHHHTCSEEEECS
T ss_pred CCCcHHHHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcc-----cccceeeeccchhhHHHhhhcccccceeecC
Confidence 57776655555554 569998532 2457777766654432 3446667766656667777788999999995
Q ss_pred CCCcHHHHHHHHHC---CCeEeec--------------------------cC---hhchHHHHHHhhCCCCCcEEEccCC
Q 022271 96 GEYSEELVLEAHSA---GVKVVPQ--------------------------DG---LISLLPMVVDLIGDRDIPIIAAGGI 143 (300)
Q Consensus 96 G~~~~~~v~~~~~~---G~~v~~~--------------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI 143 (300)
..+.+.++.+++. ...++.. .| .++++. .. ...|++.||||
T Consensus 82 -~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~----~~--~~~~~~LAGGl 154 (198)
T d1piia1 82 -NEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLN----GQ--SLGNVLLAGGL 154 (198)
T ss_dssp -CCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGT----TS--CCTTEEEESSC
T ss_pred -CccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhc----cc--ccceeEEecCC
Confidence 4466778877653 2223221 00 122321 11 25789999999
Q ss_pred CChHHHHHHHHCCCcEEEecccc
Q 022271 144 VDARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 144 ~~g~~v~aal~lGAdgV~~GT~f 166 (300)
+++-+..++..++.||=+-|..
T Consensus 155 -~~~Nv~~a~~~~p~gvDvsSGv 176 (198)
T d1piia1 155 -GADNCVEAAQTGCAGLDFNSAV 176 (198)
T ss_dssp -CTTTHHHHHTTCCSEEEECGGG
T ss_pred -CHHHHHHHHhcCCCEEEeCCcc
Confidence 8889999999999998876654
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=96.62 E-value=0.026 Score=45.74 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=86.9
Q ss_pred CCCcHHHHHHHHh--CCceEEecCC---CCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcC
Q 022271 21 DISGPELVAAVAN--AGGLGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (300)
Q Consensus 21 g~s~~~la~avs~--aGglG~i~~~---~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~ 95 (300)
|+++++=+..+.+ +..+||+... -+.++++.++.++.+. ....-|.++...+.++..+.+.+.++++|.++.
T Consensus 7 Git~~ed~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~---~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlHg 83 (200)
T d1v5xa_ 7 GITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALG---PFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHG 83 (200)
T ss_dssp CCCCHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSC---SSSEEEEEESSCCHHHHHHHHHHTTCSEEEECS
T ss_pred CCCcHHHHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhc---Cceeeeeeeeechhhhhhhhhcccccccccccc
Confidence 5666655555555 4569998642 2456776655444332 233557778777767777888889999999994
Q ss_pred CCCcHHHHHHHHHCCCeEeec---------------------------cC---hhchHHHHHHhhCCCCCcEEEccCCCC
Q 022271 96 GEYSEELVLEAHSAGVKVVPQ---------------------------DG---LISLLPMVVDLIGDRDIPIIAAGGIVD 145 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~---------------------------~~---~~~ll~~v~~~~~~~~iPViaaGGI~~ 145 (300)
..+.+.++.++. ...++.. .+ .+.+....... ..|++.||||.
T Consensus 84 -~e~~~~~~~l~~-~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~~~----~~~~~LAGGl~- 156 (200)
T d1v5xa_ 84 -EEPPEWAEAVGR-FYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLLAT----GRRVILAGGIA- 156 (200)
T ss_dssp -CCCHHHHHHHTT-TSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHHHT----TSCEEECSSCC-
T ss_pred -cCCHHHHHHHhh-ccccceeeccCchhhHHHhhcchhheeecccccCcccccchHHHhhhhhc----cCceEecCCCC-
Confidence 456677777654 2333321 00 12232222221 57999999996
Q ss_pred hHHHHHHHHCCCcEEEecccc
Q 022271 146 ARGYVAALSLGAQGICLGTRF 166 (300)
Q Consensus 146 g~~v~aal~lGAdgV~~GT~f 166 (300)
++-+.+++..+..||=+-|..
T Consensus 157 ~~Nv~~~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 157 PENLEEVLALRPYALDLASGV 177 (200)
T ss_dssp STTHHHHHHHCCSEEEESGGG
T ss_pred HHHHHHHHhcCCCEEEEcCce
Confidence 556899999999998776655
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.0095 Score=49.05 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.++++|+++++..... -++++...+. ....+.+.+.|+++|-++.|--+ .| .+.
T Consensus 100 ~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~~---------~g-------at~ 162 (211)
T d1ub3a_ 100 DLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGP---------RG-------ASL 162 (211)
T ss_dssp CHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSSS---------CC-------CCH
T ss_pred CHHHHHHHHHHHHHhccCC-ceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCCC---------CC-------CCH
Confidence 6788999999998876543 3666665332 23456778899999988776311 01 133
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEE
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 160 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV 160 (300)
.-+..+++.+++ ++.|=++|||.|.+++.+++.+||+-+
T Consensus 163 e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 163 EDVALLVRVAQG-RAQVKAAGGIRDRETALRMLKAGASRL 201 (211)
T ss_dssp HHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHHhhhHh
Confidence 333334444432 688999999999999999999999953
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=96.50 E-value=0.0095 Score=49.54 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.+.++|+++++....+. ++++...+. ....+.+.+.|+++|-++.|--+. | .++
T Consensus 100 ~~~~v~~ei~~v~~~~~~~~-lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~~~---------g-------at~ 162 (225)
T d1mzha_ 100 KYDFVVEELKEIFRETPSAV-HKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPR---------G-------TTL 162 (225)
T ss_dssp CHHHHHHHHHHHHHTCTTSE-EEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSS---------C-------CCH
T ss_pred cHHHHHHHHHHHHHhccCce-eehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCCCC---------C-------CCH
Confidence 55778888888877654433 566654332 234677788899999887763211 1 122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.-+..+++.+++ ++.|=++|||.|.+++.+++.+||+- +||.
T Consensus 163 e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~i~~Ga~R--iGtS 204 (225)
T d1mzha_ 163 EEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADR--IGTS 204 (225)
T ss_dssp HHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSE--EEES
T ss_pred HHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHhchhh--eecC
Confidence 333444455542 68999999999999999999999995 4543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.0023 Score=54.28 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=57.7
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|.++++.+.+.|+.-++. . ..+.++.++.+.. ++|+..+|||.+-+++..++..||+-|.+||..+-
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~---~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQI---DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhcc---CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 567777777777765553 1 1344555555554 89999999999999999999999999999999885
Q ss_pred CcccCCCHHHHHHHHc
Q 022271 169 SEESYAHPEYKRKLVE 184 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~ 184 (300)
. ++..++....
T Consensus 109 n-----~~~l~~~~~~ 119 (253)
T d1thfd_ 109 N-----PSLITQIAQT 119 (253)
T ss_dssp C-----THHHHHHHHH
T ss_pred C-----hHHHHHHHHH
Confidence 5 3444554443
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.017 Score=48.64 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.++++|+.+++.... .-++++...+. ....+.+.+.|+++|-++.|-.+. | .+.
T Consensus 133 ~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~~~---------g-------at~ 195 (251)
T d1o0ya_ 133 EWEYVYEDIRSVVESVKG-KVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFGTG---------G-------ATA 195 (251)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSC---------C-------CCH
T ss_pred CHHHHHHHHHHHHHHhcc-cceeeeecccccCcHHHHHHHHHHHHhCcceeeccCCCCCC---------C-------cCH
Confidence 668888999999887642 34666665432 234677788999999887763210 0 122
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.-+..+++.+. .++.|=++|||.|.+++.+++.+||+- +||.
T Consensus 196 e~V~~m~~~~~-~~~giKasGGIrt~~~a~~~i~aGa~r--iGtS 237 (251)
T d1o0ya_ 196 EDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADR--IGTS 237 (251)
T ss_dssp HHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSE--EEES
T ss_pred HHHHHHHHHhC-CCceEeccCCcCCHHHHHHHHHHhhHH--hCCC
Confidence 22222333333 268889999999999999999999996 4653
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.15 E-value=0.02 Score=50.93 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcC-CcEEeeeecCC--------Cc-----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 50 YLRDLIRKTRSLTE-RPFGVGVVLAF--------PH-----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 50 ~l~~~i~~~r~~~~-~P~gvnl~~~~--------~~-----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
-+.+.++.+|+... .++++.+.... .. .+.++.+.+.|++.+.++.|.... +
T Consensus 212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~---------~----- 277 (363)
T d1vyra_ 212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG---------G----- 277 (363)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB---------C-----
T ss_pred hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCCccC---------C-----
Confidence 46677888888754 35777665421 11 234566677899999888654210 0
Q ss_pred ccC-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 116 QDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 116 ~~~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
.+ ...+-..+++.+ ++||++.|+ .|++.+.++|+-| ||.|.||+.|++-++
T Consensus 278 -~~~~~~~~~~~~~~~---~~~vi~~G~-~t~~~ae~~l~~G~~DlV~~gR~liadP~ 330 (363)
T d1vyra_ 278 -KPYSEAFRQKVRERF---HGVIIGAGA-YTAEKAEDLIGKGLIDAVAFGRDYIANPD 330 (363)
T ss_dssp -CCCCHHHHHHHHHHC---CSEEEEESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred -ccccHHHHHHHHHhc---CceEEecCC-CCHHHHHHHHHCCCcceehhhHHHHHCcc
Confidence 11 223445566666 688887665 5899999999999 899999999998764
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.10 E-value=0.003 Score=53.61 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=57.2
Q ss_pred cHHHHHHHHHCCCeEeec----------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ----------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~----------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-+++..+.+.|+.-++. ...+.++.++...+ .+|+.++|||.+-+++..++.+||+-|.+||..+.
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~---~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhc---CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 445666666666554432 11346677777766 79999999999999999999999999999999877
Q ss_pred CcccCCCHHHHHHHHc
Q 022271 169 SEESYAHPEYKRKLVE 184 (300)
Q Consensus 169 t~Es~~~~~~k~~i~~ 184 (300)
.+ +..++....
T Consensus 111 ~~-----~~~~~~~~~ 121 (252)
T d1h5ya_ 111 NP-----QLVALLARE 121 (252)
T ss_dssp CT-----HHHHHHHHH
T ss_pred Cc-----chHHHHHHh
Confidence 63 345554444
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0023 Score=54.18 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=51.2
Q ss_pred cHHHHHHHHHCCCeEeec---c-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEecccccc
Q 022271 99 SEELVLEAHSAGVKVVPQ---D-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 168 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~ 168 (300)
|-++++.+.+.|+.-++. . ..+.++.++...+ .+|+..+|||.+-+++..++.+||+-|.+||..+-
T Consensus 32 P~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~---~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 32 PVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERV---FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC---CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhcc---CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 456666666666544432 1 1345666666654 79999999999999999999999999999998776
Q ss_pred C
Q 022271 169 S 169 (300)
Q Consensus 169 t 169 (300)
.
T Consensus 109 n 109 (251)
T d1ka9f_ 109 R 109 (251)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=96.02 E-value=0.022 Score=45.09 Aligned_cols=113 Identities=22% Similarity=0.198 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhcC-CcEEe-eeecCCCc----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----c
Q 022271 48 PDYLRDLIRKTRSLTE-RPFGV-GVVLAFPH----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----D 117 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~-~P~gv-nl~~~~~~----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~ 117 (300)
.+.+++.++...+.++ +|.-+ -.+..+.+ .-....+.+.|.+++......+++++++.+.+.+..++.. .
T Consensus 20 ~e~lr~~~~~~~~~~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~ 99 (168)
T d7reqa2 20 VEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAG 99 (168)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSS
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcc
Confidence 3567777776554444 44211 11222211 2334566678999998876667899999999888888764 3
Q ss_pred ChhchHHHHHHhhCC---CCCcEEEccCCCChHHHHHHHHCCCcEEE
Q 022271 118 GLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGIC 161 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~---~~iPViaaGGI~~g~~v~aal~lGAdgV~ 161 (300)
..+.+++++.+.+++ .++||+ .||+--..|..+...+|.|.|.
T Consensus 100 ~~~~~~~~l~~~L~~~g~~~v~Vi-vGG~ip~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 100 GHLTLVPALRKELDKLGRPDILIT-VGGVIPEQDFDELRKDGAVEIY 145 (168)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSEEE-EEESCCGGGHHHHHHHTEEEEE
T ss_pred cchHHHHHHHHHHHhcCCCCeEEE-EeCCCCHHHHHHHHhCCCCEEE
Confidence 356777887776642 357776 5556677888888899999864
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.98 E-value=0.0062 Score=50.97 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=52.0
Q ss_pred cHHHHHHHHHCCCeEeec---------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 99 SEELVLEAHSAGVKVVPQ---------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
|-+.+..+.+.|+.-++. .....++..+...+ .+||...|||.+-+++.+++.+||+-|.+||..+-.
T Consensus 33 P~~~a~~~~~~ga~~l~i~DLd~~~~~~~~~~~i~~i~~~~---~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 33 PLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAM---DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHHC---SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEeecccccccchHHHHHHHHhhc---CcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 345555555666555543 12456777777776 799999999999999999999999999999987654
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.078 Score=41.79 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEeeeec---CCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec--------
Q 022271 48 PDYLRDLIRKTRSLTERPFGVGVVL---AFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------- 116 (300)
Q Consensus 48 ~~~l~~~i~~~r~~~~~P~gvnl~~---~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-------- 116 (300)
.-.+.+.++.+++. +|..-|++=. -..++..++.+.+.+++.|..+ ...++...++.|...+..
T Consensus 30 I~~l~~~v~~~k~~-gK~v~VHiDLi~GL~~d~~av~flk~~~~dGIIST----k~~~i~~Ak~~Gl~tIqR~FliDS~a 104 (172)
T d1vkfa_ 30 ILNLKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI----KPKNYVVAKKNGIPAVLRFFALDSKA 104 (172)
T ss_dssp TTTHHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES----CHHHHHHHHHTTCCEEEEEECCSHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEEEeeecCCCCCCHHHHHHHHHcCCCEEEEC----CHHHHHHHHHcCCeEEEEEEeeehHH
Confidence 34566677777765 4444465422 1345777888888899998775 246788999999888754
Q ss_pred -----------cC-hhc-----hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 117 -----------DG-LIS-----LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 117 -----------~~-~~~-----ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
.+ .++ +.|.+.+.+. +.||||+|=|.|-+++.++|.. +.+|--...
T Consensus 105 l~~~~~~i~~~~PD~IEiLPG~i~p~ii~~~~--~~piIAGGLI~~~edv~~al~~-g~aVSTS~~ 167 (172)
T d1vkfa_ 105 VERGIEQIETLGVDVVEVLPGAVAPKVARKIP--GRTVIAAGLVETEEEAREILKH-VSAISTSSR 167 (172)
T ss_dssp HHHHHHHHHHHTCSEEEEESGGGHHHHHTTST--TSEEEEESCCCSHHHHHHHTTT-SSEEEECCH
T ss_pred HHHHHHHHhhcCCCEEEECCchhhHHHHHHhc--CCCEEeeCCcCCHHHHHHHHhc-CeEEECCCh
Confidence 00 111 2356655443 6899999999999999999975 458765543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.52 E-value=0.0033 Score=55.32 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=49.7
Q ss_pred cHHHHHHHHHCCCeEeec---c----------ChhchHHHHHHhhCCCCCcEEEccCCCChHH-----------HHHHHH
Q 022271 99 SEELVLEAHSAGVKVVPQ---D----------GLISLLPMVVDLIGDRDIPIIAAGGIVDARG-----------YVAALS 154 (300)
Q Consensus 99 ~~~~v~~~~~~G~~v~~~---~----------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~-----------v~aal~ 154 (300)
|.+.++...+.|+.-++. . ..+.++.++.+.+ .+||-.+|||.+-+| +.+.|.
T Consensus 50 P~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~---~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 50 PVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV---FVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC---CSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc---ceeEEEecCcccHHHhhhccchhhHHHHHHHH
Confidence 455666667777755543 1 1234444444443 899999999999765 578999
Q ss_pred CCCcEEEeccccccCcc
Q 022271 155 LGAQGICLGTRFVASEE 171 (300)
Q Consensus 155 lGAdgV~~GT~fl~t~E 171 (300)
+|||-|.+||..+-.+|
T Consensus 127 ~GadKVvI~T~ai~~p~ 143 (323)
T d1jvna1 127 SGADKVSIGTDAVYAAE 143 (323)
T ss_dssp HTCSEEEECHHHHHHHH
T ss_pred cCCCeEEechHHhhChH
Confidence 99999999999886544
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.50 E-value=0.021 Score=47.18 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=69.1
Q ss_pred HHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCC----cHHHHHHHHHCCCeEeec------------
Q 022271 54 LIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ------------ 116 (300)
Q Consensus 54 ~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~----~~~~v~~~~~~G~~v~~~------------ 116 (300)
.++++|+.+ +.|+-+-|+...|. ..++.+.+.++..+.+..-.. ....++.+++.|..+...
T Consensus 51 ~v~~i~~~~~~~~~dvHLMv~~P~-~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~ 129 (221)
T d1tqxa_ 51 VINNLKKYTKSIFFDVHLMVEYPE-KYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVP 129 (221)
T ss_dssp HHHHHGGGCSSCEEEEEEESSCGG-GGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHH
T ss_pred HHhhhhhcCCchhhhhhHHhhhhh-hhhhhhhhcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchh
Confidence 567788874 67999999987653 234444455555554432110 113344455555554322
Q ss_pred -------------------------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 117 -------------------------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 -------------------------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
...+.-+.++++.. .++.|.+.|||.. +.+.....+|||.+++||.+...
T Consensus 130 ~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~--~~~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~if~~ 204 (221)
T d1tqxa_ 130 ILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNIQVDGGLNI-ETTEISASHGANIIVAGTSIFNA 204 (221)
T ss_dssp HHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEEEEESSCCH-HHHHHHHHHTCCEEEESHHHHTC
T ss_pred hcccccccEEEEEeecccccccccCcchhHHHHHHHHhc--CCcceEEEcccCH-HhHHHHHHcCCCEEEEChHHHCC
Confidence 11333444554443 2688999999955 67899999999999999976543
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=94.82 E-value=0.062 Score=47.54 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcC-CcEEeeeecCCC-------cHH-----HHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeecc
Q 022271 51 LRDLIRKTRSLTE-RPFGVGVVLAFP-------HNE-----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQD 117 (300)
Q Consensus 51 l~~~i~~~r~~~~-~P~gvnl~~~~~-------~~~-----~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~ 117 (300)
+.+.|+.+|+..+ .++++.+..... ..+ .++.+...++..+..+.+......-. .
T Consensus 211 ~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~ 278 (364)
T d1icpa_ 211 ALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEK------------I 278 (364)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-----------------
T ss_pred HHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccc------------c
Confidence 5577888888753 456776654321 111 12222234455555543322111100 1
Q ss_pred ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 118 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 118 ~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
........+++.+ +.||++.||+ |++.+.++++-| ||.|.||+.+++.++
T Consensus 279 ~~~~~~~~i~~~~---~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd 329 (364)
T d1icpa_ 279 ECTESLVPMRKAY---KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPD 329 (364)
T ss_dssp -CCCCSHHHHHHC---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred ccHHHHHHHHHhc---CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCcc
Confidence 2334455677776 7899998886 788999999975 999999999998865
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=94.65 E-value=0.027 Score=46.88 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHCCCeEeecc---------C-hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 96 GEYSEELVLEAHSAGVKVVPQD---------G-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 96 G~~~~~~v~~~~~~G~~v~~~~---------~-~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
|. |-++++.+.+.|+..++.. + ...++..+.+. ..|+-..|||.+-+++...+..||+-|.++|.
T Consensus 30 ~d-P~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~~~~~----~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KD-PVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEF----AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_dssp SC-HHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGGGG----GGGEEEESSCCSHHHHHHHHHTTCCEEEECHH
T ss_pred CC-HHHHHHHHHHCCCCEEEEEecccccccCCcchhheehhccc----ccchhhhhhhhhhhhhhhccccccceEecCcc
Confidence 44 5667777777777666541 1 12233333332 58999999999999999999999999999998
Q ss_pred cccCc
Q 022271 166 FVASE 170 (300)
Q Consensus 166 fl~t~ 170 (300)
++-.+
T Consensus 105 ~~~~~ 109 (241)
T d1qo2a_ 105 VLEDP 109 (241)
T ss_dssp HHHCT
T ss_pred cccCc
Confidence 77664
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.34 Score=40.25 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=87.2
Q ss_pred CCcHHHHHHHHhCCceEE-ecCCCCCCHHHHHHHHHHHHhh---cCCcEEeeeecCCCc-----HHHHHHHHHcCCcEEE
Q 022271 22 ISGPELVAAVANAGGLGL-LRAPDWEAPDYLRDLIRKTRSL---TERPFGVGVVLAFPH-----NENIKAILSEKVAVLQ 92 (300)
Q Consensus 22 ~s~~~la~avs~aGglG~-i~~~~~~~~~~l~~~i~~~r~~---~~~P~gvnl~~~~~~-----~~~~~~~~e~g~~~i~ 92 (300)
..+++......++|.=.+ |... ..+.++..+.|+.+|+. .++|.++-+-...|. .+.++..++.++++|.
T Consensus 14 s~~~~~l~~li~aGvdv~RlN~S-Hg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ia 92 (246)
T d1e0ta2 14 TESEEMLAKMLDAGMNVMRLNFS-HGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQGVDFVA 92 (246)
T ss_dssp GCSHHHHHHHHHHTEEEEEEETT-SSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEE
T ss_pred cCCHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHcCCCEEE
Confidence 457788888888884222 2332 24888888888888775 578877766555442 5678888999999999
Q ss_pred EcCCCCcHHHHHH----HHHCC---CeEeec-----------------------cC------hhchHHHH----HHhhCC
Q 022271 93 VSWGEYSEELVLE----AHSAG---VKVVPQ-----------------------DG------LISLLPMV----VDLIGD 132 (300)
Q Consensus 93 ~~~G~~~~~~v~~----~~~~G---~~v~~~-----------------------~~------~~~ll~~v----~~~~~~ 132 (300)
++|=.-.. .+.. +++.| +.++.. .| .+.-+|.+ ......
T Consensus 93 lSFVr~~~-Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei~~e~vp~~Qk~ii~~~~~ 171 (246)
T d1e0ta2 93 ASFIRKRS-DVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIR 171 (246)
T ss_dssp ESSCCSHH-HHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHH-HHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccchhhhCCHHHHHHHHHHHHHHHHH
Confidence 99854333 3443 33333 456653 01 11223322 111111
Q ss_pred CCCcEEEccCCCC------------hHHHHHHHHCCCcEEEec
Q 022271 133 RDIPIIAAGGIVD------------ARGYVAALSLGAQGICLG 163 (300)
Q Consensus 133 ~~iPViaaGGI~~------------g~~v~aal~lGAdgV~~G 163 (300)
.+.|||.|.-+-+ -.|++.++..|||+|++.
T Consensus 172 ~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs 214 (246)
T d1e0ta2 172 ARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLS 214 (246)
T ss_dssp HTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEEC
T ss_pred hCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEc
Confidence 2689999988765 357888889999999983
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.43 E-value=0.13 Score=43.98 Aligned_cols=155 Identities=13% Similarity=0.135 Sum_probs=88.3
Q ss_pred cccC--CccceecCCCCCCCCcHHHHHHHHhCCceEEecCC-------------------------------------CC
Q 022271 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP-------------------------------------DW 45 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~-------------------------------------~~ 45 (300)
+++| ++.||+.|... .-.+.++......+| +|++-.. ++
T Consensus 4 ~~~Gl~l~nPi~~Asg~-~~~~~~~~~~~~~~G-~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~ 81 (312)
T d1gtea2 4 EMAGLKFINPFGLASAA-PTTSSSMIRRAFEAG-WGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELI 81 (312)
T ss_dssp EETTEEESSSEEECSSG-GGSSHHHHHHHHHHT-CSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCS
T ss_pred EECCEEcCCCcEECCcC-CCCCHHHHHHHHHcC-CcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccc
Confidence 4445 57899987643 345667777777766 2222110 00
Q ss_pred --CCHHHHHHHHHHHHhhc-CCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-cC
Q 022271 46 --EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-DG 118 (300)
Q Consensus 46 --~~~~~l~~~i~~~r~~~-~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~~ 118 (300)
..++...+.++++++.. +.++.++....... .+.++.+.+.+++++.++++||..... +..|...... .-
T Consensus 82 ~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~---~~~~~~~~~~~~~ 158 (312)
T d1gtea2 82 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGE---RGMGLACGQDPEL 158 (312)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC--------SBGGGCHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccc---cccchhhhhhHHH
Confidence 12456666777776543 34444444443332 345666778899999999998732111 1111111111 11
Q ss_pred hhchHHHHHHhhCCCCCcEEE--ccCCCChHHHHHHH-HCCCcEEEeccccc
Q 022271 119 LISLLPMVVDLIGDRDIPIIA--AGGIVDARGYVAAL-SLGAQGICLGTRFV 167 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPVia--aGGI~~g~~v~aal-~lGAdgV~~GT~fl 167 (300)
+..++..+++.+ ++||++ ...+.+..+++.++ ..|++++.+...+.
T Consensus 159 ~~~i~~~v~~~~---~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~ 207 (312)
T d1gtea2 159 VRNICRWVRQAV---QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVS 207 (312)
T ss_dssp HHHHHHHHHHHC---SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEE
T ss_pred HHHHHHHHhhcc---CCceeecccccchhHHHHHHHHHHhcccceEEEeecc
Confidence 233455555554 789884 66778888877655 69999999866544
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.42 E-value=0.12 Score=42.88 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.7
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTR 165 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~ 165 (300)
++.|=++|||.|.+++.+++.+||+- +||.
T Consensus 192 ~vgIKasGGIrt~~~a~~~i~aGa~r--IGtS 221 (234)
T d1n7ka_ 192 GMGVKASGGIRSGIDAVLAVGAGADI--IGTS 221 (234)
T ss_dssp TCEEEEESSCCSHHHHHHHHHTTCSE--EEET
T ss_pred CCcEEeeCCcCCHHHHHHHHHccCce--eecc
Confidence 68899999999999999999999995 5653
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.00 E-value=0.026 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=39.7
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+...+++.+ ++||++.|+| |++.+.++|.-| ||.|.||+.|++-++
T Consensus 287 ~~~~i~~~~---~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd 333 (374)
T d1gwja_ 287 FREQMRQRF---KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPD 333 (374)
T ss_dssp HHHHHHHHC---CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHHHc---CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCcc
Confidence 445677776 7999999999 899999999987 999999999998754
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.74 E-value=0.5 Score=37.67 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCcEEeeeecCCC-c--HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec-c------------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFP-H--NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-D------------ 117 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~-~--~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~-~------------ 117 (300)
.++++++..++|+-..+-..+- + ...++.+.+.|+++++++. ....+.++.+++.+...... .
T Consensus 42 ~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~-~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (206)
T d2czda1 42 IIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHT-FVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 120 (206)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-TTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred HHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeee-cccHHHHHHhhhcccceEEEeccCCcccccccHH
Confidence 3666666567777676655542 2 4567788889999999984 33466777777766554322 0
Q ss_pred --------------------ChhchHHHHHHhhCCCCCcEEEccCCC-ChHHHHHHHHCCCcEEEeccccccCc
Q 022271 118 --------------------GLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRFVASE 170 (300)
Q Consensus 118 --------------------~~~~ll~~v~~~~~~~~iPViaaGGI~-~g~~v~aal~lGAdgV~~GT~fl~t~ 170 (300)
....-+..+++... .+.. +...||+ .+.+...++..|||-+++|+....++
T Consensus 121 ~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~-~~~~-i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~ 192 (206)
T d2czda1 121 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK-EGIK-ILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAP 192 (206)
T ss_dssp HHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSC-TTCE-EEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSS
T ss_pred HHHHHHHHHhcccccccccccCchhhhhhhhhhc-ccce-EECCCccccCCCHHHHHHhCCCEEEEChhhccCC
Confidence 01112334444432 1344 4555654 34577888999999999999997763
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=93.65 E-value=0.064 Score=40.73 Aligned_cols=72 Identities=18% Similarity=0.061 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCC----hHH-H
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVD----ARG-Y 149 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~----g~~-v 149 (300)
|.++.++.+.+.++++|.+|.-.... ... .-.++.++++.- ..++||++.|++.+ ..+ .
T Consensus 42 p~e~iv~a~~~~~~d~v~lS~~~~~~--~~~-------------~~~~~~~l~~~~-~~~i~iivGG~~~~~~~~~~~~~ 105 (137)
T d1ccwa_ 42 PQELFIKAAIETKADAILVSSLYGQG--EID-------------CKGLRQKCDEAG-LEGILLYVGGNIVVGKQHWPDVE 105 (137)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECSSTH--HHH-------------HTTHHHHHHHTT-CTTCEEEEEESCSSSSCCHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEeeccccc--hHH-------------HHHHHHHHHHhc-cCCCEEEEeCCcCCCccccHHHH
Confidence 44566666666666666555322111 111 123344444332 13799999999976 333 4
Q ss_pred HHHHHCCCcEEEe
Q 022271 150 VAALSLGAQGICL 162 (300)
Q Consensus 150 ~aal~lGAdgV~~ 162 (300)
.+...+|.|+|.=
T Consensus 106 ~~l~~~Gv~~if~ 118 (137)
T d1ccwa_ 106 KRFKDMGYDRVYA 118 (137)
T ss_dssp HHHHHTTCSEECC
T ss_pred HHHHHcCCCEEEC
Confidence 4455789998863
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.31 Score=40.91 Aligned_cols=144 Identities=20% Similarity=0.323 Sum_probs=89.8
Q ss_pred CCCCCCCcHHHHHHHHhCCceEEe--cCCCCCCHHHHHHHHHHHHhh----cCCcEEeeeecCCCc-----HHHHHHHHH
Q 022271 17 PLGPDISGPELVAAVANAGGLGLL--RAPDWEAPDYLRDLIRKTRSL----TERPFGVGVVLAFPH-----NENIKAILS 85 (300)
Q Consensus 17 pM~~g~s~~~la~avs~aGglG~i--~~~~~~~~~~l~~~i~~~r~~----~~~P~gvnl~~~~~~-----~~~~~~~~e 85 (300)
-+|+...+++....+.++| +-++ ... ..+.++..+.|+.+|+. .++|+++.+-...|. .+.++..++
T Consensus 26 TiGPas~~~e~l~~li~aG-~dv~RlN~S-Hg~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~~a~~ 103 (265)
T d1a3xa2 26 TIGPKTNNPETLVALRKAG-LNIVRMNFS-HGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVK 103 (265)
T ss_dssp ECCTTTCSHHHHHHHHHHT-EEEEEEETT-SCCHHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHcC-CCEEEEECC-CCCHHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHHHhhh
Confidence 3444456788888999988 4443 332 24788888888888764 357877766555442 567889999
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH------CCCeEeec-----------------------cCh------hchHHH----H
Q 022271 86 EKVAVLQVSWGEYSEELVLEAHS------AGVKVVPQ-----------------------DGL------ISLLPM----V 126 (300)
Q Consensus 86 ~g~~~i~~~~G~~~~~~v~~~~~------~G~~v~~~-----------------------~~~------~~ll~~----v 126 (300)
.++++|.++|=. ..+.+..+++ ..+.++.. .|. +.-+|. +
T Consensus 104 ~~vD~ialSFVr-s~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei~~e~vp~~Qk~I 182 (265)
T d1a3xa2 104 NGVHMVFASFIR-TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKL 182 (265)
T ss_dssp TTCCEECCTTCC-SHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHSCHHHHHHHHHHH
T ss_pred cccceEeeccCC-CHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccchhhhccHHHHHHHHHHH
Confidence 999999999844 3344544442 23444433 011 112222 2
Q ss_pred HHhhCCCCCcEEEccCCC------------ChHHHHHHHHCCCcEEEec
Q 022271 127 VDLIGDRDIPIIAAGGIV------------DARGYVAALSLGAQGICLG 163 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~------------~g~~v~aal~lGAdgV~~G 163 (300)
....+..+.|||.|.-+- .-.|++.++..|+|+|++.
T Consensus 183 i~~~~~~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs 231 (265)
T d1a3xa2 183 IAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLS 231 (265)
T ss_dssp HHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCS
T ss_pred HHHHHHcCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 221111268999988553 2356888899999999985
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=93.46 E-value=0.038 Score=49.17 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=38.8
Q ss_pred hHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC-CcEEEeccccccCcc
Q 022271 122 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 171 (300)
Q Consensus 122 ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG-AdgV~~GT~fl~t~E 171 (300)
+...+++.+ ++||++.||+ +.+.+.++++.| ||.|.||+.|++-++
T Consensus 298 ~~~~ik~~~---~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPd 344 (380)
T d1q45a_ 298 LMKSLRMAY---NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPD 344 (380)
T ss_dssp HHHHHHHHS---CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHhhcc---CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCcc
Confidence 344555565 7999999998 799999999997 999999999999865
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=93.46 E-value=1.6 Score=36.18 Aligned_cols=146 Identities=14% Similarity=0.211 Sum_probs=89.6
Q ss_pred CCCCCCCCcHHHHHHHHhCCceEE-ecCCCCCCHHHHHHHHHHHHhh---cCCcEEeeeecCCC------cHHHHHHHHH
Q 022271 16 APLGPDISGPELVAAVANAGGLGL-LRAPDWEAPDYLRDLIRKTRSL---TERPFGVGVVLAFP------HNENIKAILS 85 (300)
Q Consensus 16 apM~~g~s~~~la~avs~aGglG~-i~~~~~~~~~~l~~~i~~~r~~---~~~P~gvnl~~~~~------~~~~~~~~~e 85 (300)
+-+++...+++......++|.=.+ |... ..+.++..+.++.+|+. .++|+++-+-...| +...++...+
T Consensus 25 aTiGPas~~~~~l~~li~aGvdv~RiN~S-Hg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~ 103 (258)
T d1pkla2 25 CTIGPSTQSVEALKGLIQSGMSVARMNFS-HGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVE 103 (258)
T ss_dssp EECCGGGCSHHHHHHHHHHTEEEEEEETT-SSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHH
T ss_pred EeeCCCcCCHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHh
Confidence 345444567888888899884333 2332 35888888888888875 56776654433332 2567889999
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH----C--CCeEeec-----------------------cC------hhchHHH----H
Q 022271 86 EKVAVLQVSWGEYSEELVLEAHS----A--GVKVVPQ-----------------------DG------LISLLPM----V 126 (300)
Q Consensus 86 ~g~~~i~~~~G~~~~~~v~~~~~----~--G~~v~~~-----------------------~~------~~~ll~~----v 126 (300)
.++++|.+||=. ..+.+..+++ . .+.++.. .| .+.-+|. +
T Consensus 104 ~~vD~ialSFVr-s~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~ei~~e~vp~~Qk~I 182 (258)
T d1pkla2 104 QGVDMIFASFIR-SAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKIL 182 (258)
T ss_dssp HTCSEEEETTCC-SHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEeCCC-CHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEechhhhhhcchhhhhhHHHHH
Confidence 999999999844 3334444432 2 3455543 01 1112332 1
Q ss_pred HHhhCCCCCcEEEccCCC------------ChHHHHHHHHCCCcEEEec
Q 022271 127 VDLIGDRDIPIIAAGGIV------------DARGYVAALSLGAQGICLG 163 (300)
Q Consensus 127 ~~~~~~~~iPViaaGGI~------------~g~~v~aal~lGAdgV~~G 163 (300)
....+..+.|||.|.-+- .-.|++-++..|+|+|++.
T Consensus 183 i~~~~~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs 231 (258)
T d1pkla2 183 ISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLS 231 (258)
T ss_dssp HHHHHHHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 111111268999988543 2347888899999999984
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=92.03 E-value=0.043 Score=49.22 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHhhCCCCCcEEEccCCCChHHHHHHHHC-CCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 126 VVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 126 v~~~~~~~~iPViaaGGI~~g~~v~aal~l-GAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
+++.+ ++|||+.|||.+..++.+.+.. +||.|.||+.|++-++ +-+++.+
T Consensus 312 ik~~~---~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~------l~~K~~~ 362 (399)
T d1oyaa_ 312 VYSIW---KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPD------LVDRLEK 362 (399)
T ss_dssp HHHHC---CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTT------HHHHHHH
T ss_pred HHHHh---CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCcc------HHHHHHc
Confidence 45555 7999999999988787776655 6999999999998754 4455554
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.79 E-value=0.87 Score=37.12 Aligned_cols=104 Identities=15% Similarity=0.047 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEeeeecCCCc------HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChh
Q 022271 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH------NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLI 120 (300)
Q Consensus 47 ~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~------~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~ 120 (300)
+.+.++++|+++++... +.-++++...+. ....+.+.+.|+++|-++.|--....-. ..|-.+..+....
T Consensus 96 ~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~---~~~~~~~at~~~~ 171 (226)
T d1vcva1 96 RWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAA---RQGNPVHSTPERA 171 (226)
T ss_dssp CHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHH---HTTCCSSCCHHHH
T ss_pred CHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccc---cccCcccCcHHHH
Confidence 56788899999988753 334677765432 2346777789999998877642221110 1111111111123
Q ss_pred chHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 121 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 121 ~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
.++.++..... .++-|=++|||.|.+++.+++.+
T Consensus 172 ~~~~~~~~~~g-~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 172 AAIARYIKEKG-YRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHHHHHHHHHT-CCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CceeEECcCCCCCHHHHHHHHHh
Confidence 34444444432 26788999999999999999876
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=91.78 E-value=0.43 Score=38.67 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+..+.+.+.|+++|.+.+-.| ..+..+.++++... + -++.+|-|.|.+++.++..+|
T Consensus 29 ~~~~~al~~~Gi~~iEitl~~~-------------------~a~~~I~~l~~~~p--~-~~vGaGTV~~~~~~~~a~~aG 86 (212)
T d1vhca_ 29 LPLADTLAKNGLSVAEITFRSE-------------------AAADAIRLLRANRP--D-FLIAAGTVLTAEQVVLAKSSG 86 (212)
T ss_dssp HHHHHHHHHTTCCEEEEETTST-------------------THHHHHHHHHHHCT--T-CEEEEESCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEeCCCh-------------------hHHHHHHHHHhcCC--C-ceEeeeecccHHHHHHHHhhC
Confidence 4456777778888888776543 23445555665542 4 479999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 87 a~Fiv 91 (212)
T d1vhca_ 87 ADFVV 91 (212)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 98654
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=1.6 Score=36.81 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCC-C-------cHHHHHHHHHCCCeEee--
Q 022271 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-Y-------SEELVLEAHSAGVKVVP-- 115 (300)
Q Consensus 46 ~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~-~-------~~~~v~~~~~~G~~v~~-- 115 (300)
...+.+...++.+.+..+.|+.++|=.. ...+.++.+++.|..-|-+..-. | .+++++.+|..|+.|=.
T Consensus 56 ~~~~~~~~~~~~~a~~~~vpV~lHlDH~-~~~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~El 134 (284)
T d1gvfa_ 56 IALEEIYALCSAYSTTYNMPLALHLDHH-ESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 134 (284)
T ss_dssp SCHHHHHHHHHHHHHHTTSCBEEEEEEE-CCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCeEEeeeccc-cchHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhccceeeee
Confidence 4556666667777666778888777543 23566777777777766655211 1 24556666666655421
Q ss_pred --------------------------------------c-cC------------hhchHHHHHHhhCCCCCcEEEccCCC
Q 022271 116 --------------------------------------Q-DG------------LISLLPMVVDLIGDRDIPIIAAGGIV 144 (300)
Q Consensus 116 --------------------------------------~-~~------------~~~ll~~v~~~~~~~~iPViaaGGI~ 144 (300)
. .| .+.+|.++.+.+ ++|++.=||=+
T Consensus 135 G~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~---~vPLVlHGgSG 211 (284)
T d1gvfa_ 135 GRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV---DVPLVLHGASD 211 (284)
T ss_dssp SCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHC---CSCEEECCCTT
T ss_pred eeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccc---cCCeEeeCCCC
Confidence 1 11 356888998887 89999999988
Q ss_pred ChHH-HHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHc
Q 022271 145 DARG-YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 184 (300)
Q Consensus 145 ~g~~-v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~ 184 (300)
.+++ +.+++..|..-|-++|-+-.. .....|+.+.+
T Consensus 212 ~~~e~i~~ai~~Gi~KiNi~T~l~~a----~~~~~~~~l~~ 248 (284)
T d1gvfa_ 212 VPDEFVRRTIELGVTKVNVATELKIA----FAGAVKAWFAE 248 (284)
T ss_dssp CCHHHHHHHHHTTEEEEEECHHHHHH----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCeEEEEechHHHHH----HHHHHHHHHHh
Confidence 7765 778899999999999988764 33445555443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=91.43 E-value=0.2 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 134 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 134 ~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++.|=++|||.|.+++.+++.+||+ .+|+.|+
T Consensus 197 ~vgIKasGGIrt~~~a~~~i~~ga~--~iG~~~~ 228 (250)
T d1p1xa_ 197 TVGFKPAGGVRTAEDAQKYLAIADE--LFGADWA 228 (250)
T ss_dssp TCEEECBSSCCSHHHHHHHHHHHHH--HHCTTSC
T ss_pred ceeeEecCCCCCHHHHHHHHHHHHH--HhCcccc
Confidence 6889999999999999999999887 3344443
|
| >d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain species: Clostridium sticklandii [TaxId: 1511]
Probab=91.12 E-value=0.16 Score=39.50 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=49.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCC----CCCcEEEccCCCChHHHHHHHHCC
Q 022271 88 VAVLQVSWGEYSEELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 88 ~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~----~~iPViaaGGI~~g~~v~aal~lG 156 (300)
-+++.+....||+++++.+++.+..++..-. .+..++++.+.+++ .++||++.|++.|.+. +-.+|
T Consensus 57 ~eVi~LG~~vp~e~~v~~a~e~~~d~VglS~l~t~~~~h~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~~---a~~~G 133 (160)
T d1xrsb1 57 IDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELG 133 (160)
T ss_dssp EEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTT
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCEEEEeecccccchhHHHHHHHHHHHHHcCCCCceEEEEcCCCCCHHH---HHHcC
Confidence 5777776667788888888888777765411 13456666665532 2489999998988754 34689
Q ss_pred CcEEEe
Q 022271 157 AQGICL 162 (300)
Q Consensus 157 AdgV~~ 162 (300)
||++.-
T Consensus 134 aD~~f~ 139 (160)
T d1xrsb1 134 YDAGFG 139 (160)
T ss_dssp CSEEEC
T ss_pred CCEEcC
Confidence 998843
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.98 E-value=0.2 Score=44.24 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=49.5
Q ss_pred cEEEEcCCCCc--HHHHHHHHHCCCeEeecc-------ChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcE
Q 022271 89 AVLQVSWGEYS--EELVLEAHSAGVKVVPQD-------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 159 (300)
Q Consensus 89 ~~i~~~~G~~~--~~~v~~~~~~G~~v~~~~-------~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdg 159 (300)
..+..+.|..+ .+.++.+.++|+.++..+ .....+.++++... ++||| +|.+.|.+.+...+..|||+
T Consensus 96 ~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~--~~~iI-aGNV~T~e~a~~L~~aGaD~ 172 (365)
T d1zfja1 96 LLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFP--NRTLI-AGNIATAEGARALYDAGVDV 172 (365)
T ss_dssp BCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCS--SSCEE-EEEECSHHHHHHHHHTTCSE
T ss_pred eEEEEEeccCchHHHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCC--Cccee-ecccccHHHHHHHHhcCCce
Confidence 33444445433 345566667888876541 13455666666542 67776 79999999999999999999
Q ss_pred EEec
Q 022271 160 ICLG 163 (300)
Q Consensus 160 V~~G 163 (300)
|-+|
T Consensus 173 VkVG 176 (365)
T d1zfja1 173 VKVG 176 (365)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9887
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.35 Score=40.38 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCeEeec-------cChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 100 EELVLEAHSAGVKVVPQ-------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~-------~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
.++.....+.|+..+.. .|.+..+..+++++ ++||+.=-=|-|..++..+..+|||+|.+-.+++
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~---~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV---DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC---CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHc---CCCcccCCccccHHHHHHHHhccchHHHHHHHHH
Confidence 45555666667655533 46778889999887 8999999999999999999999999999987754
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.67 E-value=3.6 Score=34.40 Aligned_cols=146 Identities=19% Similarity=0.269 Sum_probs=88.3
Q ss_pred CCCCCCCCcHHHHHHHHhCCceEE-ecCCCCCCHHHHHHHHHHHHhhc---------CCcEEeeeecCCC-----cHHHH
Q 022271 16 APLGPDISGPELVAAVANAGGLGL-LRAPDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAFP-----HNENI 80 (300)
Q Consensus 16 apM~~g~s~~~la~avs~aGglG~-i~~~~~~~~~~l~~~i~~~r~~~---------~~P~gvnl~~~~~-----~~~~~ 80 (300)
+=+|+..++++......++|.=.+ |... ..+.++..+.++.+|+.. -+|.++..-...+ +.+.+
T Consensus 37 aTiGPas~~~e~l~~Li~aGvnv~RiN~S-Hg~~e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l~~~di~di 115 (282)
T d2g50a2 37 CTIGPASRSVETLKEMIKSGMNVARMNFS-HGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDL 115 (282)
T ss_dssp EECSTTTCSHHHHHHHHHHTCCEEEEETT-SSCHHHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSSCHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceeccccccccccccccccchHHHHH
Confidence 345544567888889999885333 2332 358899989999888752 2466654443333 24578
Q ss_pred HHHHHcCCcEEEEcCCCCcHHHHHHHH----H--CCCeEeec-----------------cC------------hhchHHH
Q 022271 81 KAILSEKVAVLQVSWGEYSEELVLEAH----S--AGVKVVPQ-----------------DG------------LISLLPM 125 (300)
Q Consensus 81 ~~~~e~g~~~i~~~~G~~~~~~v~~~~----~--~G~~v~~~-----------------~~------------~~~ll~~ 125 (300)
+...+.+++.|.+||=.- .+.+..++ + ....++.. ++ .+.-+|.
T Consensus 116 ~~a~~~~vD~ialSFVrs-~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGDLg~ei~~e~vp~ 194 (282)
T d2g50a2 116 KFGVEQDVDMVFASFIRK-AADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFL 194 (282)
T ss_dssp HHHHHTTCSEEEETTCCS-HHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHH
T ss_pred HHhhhccccceeecccCC-HHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccccccccCHHHhHH
Confidence 889999999999998543 33444433 2 24455543 11 1111222
Q ss_pred ----HHHhhCCCCCcEEEccCCC---------Ch---HHHHHHHHCCCcEEEec
Q 022271 126 ----VVDLIGDRDIPIIAAGGIV---------DA---RGYVAALSLGAQGICLG 163 (300)
Q Consensus 126 ----v~~~~~~~~iPViaaGGI~---------~g---~~v~aal~lGAdgV~~G 163 (300)
+....+..+.|||.|.-+- |. .|++-++..|||+|++.
T Consensus 195 ~Qk~Ii~~~~~~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs 248 (282)
T d2g50a2 195 AQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLS 248 (282)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhcCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 2221111268999876543 33 46777888999999984
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=90.62 E-value=0.72 Score=38.10 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=27.2
Q ss_pred CCcEEEccCCC--ChHHH----HHHHHCCCcEEEeccccccC
Q 022271 134 DIPIIAAGGIV--DARGY----VAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 134 ~iPViaaGGI~--~g~~v----~aal~lGAdgV~~GT~fl~t 169 (300)
.+||+.+||=. +.+++ ..++..||.|+.+|+...-.
T Consensus 194 ~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~ 235 (251)
T d1ojxa_ 194 KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 235 (251)
T ss_dssp TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred CCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCc
Confidence 68888888865 45554 45678999999999887754
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.31 Score=37.56 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=44.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec----cChhchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHH---C
Q 022271 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ----DGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALS---L 155 (300)
Q Consensus 85 e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~----~~~~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~---l 155 (300)
..|-+++.+....|++++++.+++.+..++.. ..++..++++.+.++ +.++||+..||..+.+..+.-.. .
T Consensus 32 ~~G~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~g~~~~vivGG~~~~~~~~~~~~~~~y~ 111 (156)
T d3bula2 32 CNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYS 111 (156)
T ss_dssp TTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEESTTCCHHHHHHHTGGGCS
T ss_pred HCCCEEEECCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhccccceEEEecccccchHHHhhhccccc
Confidence 45666666655556666666666655555543 224445555555543 24789999999998877654332 3
Q ss_pred CCc
Q 022271 156 GAQ 158 (300)
Q Consensus 156 GAd 158 (300)
||+
T Consensus 112 gad 114 (156)
T d3bula2 112 GPT 114 (156)
T ss_dssp SCE
T ss_pred cce
Confidence 555
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.97 Score=32.52 Aligned_cols=75 Identities=19% Similarity=0.040 Sum_probs=53.9
Q ss_pred eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 69 GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 69 nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.+.......+.++.+.+..+++|.+.+..|. ..-+.++.++++.- .++|||.-.+-.+..+
T Consensus 26 ~v~~a~~g~eal~~l~~~~~dliilD~~mP~-----------------~~G~e~~~~i~~~~--~~~pvi~lt~~~~~~~ 86 (119)
T d2pl1a1 26 QVDDAEDAKEADYYLNEHIPDIAIVDLGLPD-----------------EDGLSLIRRWRSND--VSLPILVLTARESWQD 86 (119)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEECSCCSS-----------------SCHHHHHHHHHHTT--CCSCEEEEESCCCHHH
T ss_pred EEEEECCHHHHHHHHHhcccceeehhccCCC-----------------chhHHHHHHHHhcC--cccceEeeeccCCHHH
Confidence 3333334456677777777777777766542 22356777777653 3799999999999999
Q ss_pred HHHHHHCCCcEEEe
Q 022271 149 YVAALSLGAQGICL 162 (300)
Q Consensus 149 v~aal~lGAdgV~~ 162 (300)
...++.+||++...
T Consensus 87 ~~~a~~~Ga~~yl~ 100 (119)
T d2pl1a1 87 KVEVLSAGADDYVT 100 (119)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998654
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=89.57 E-value=0.33 Score=43.09 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 100 EELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 100 ~~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
.+..+.+.++|+.++..+. .+.++..+++.. .++|| .+|++.|.+.+...+..|||+|-+|
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~--~~v~v-IaGNV~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKY--PNLDL-IAGNIVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHC--TTCEE-EEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHC--CCCce-eeccccCHHHHHHHHhcCCCeeeec
Confidence 4556667789988776522 355666666554 26775 6899999999999999999999887
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=89.04 E-value=5.2 Score=32.95 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=66.5
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCC--------C-----CCCHHHHHHHHHHHHhhcCCcEEeeeecCCC--
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------D-----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-- 75 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~-----~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~-- 75 (300)
-||.+ + ..-++..|.++.++| +.++-.| + ..+.|+.....+.+|+-...+|-+-=++...
T Consensus 15 ~ki~~--l--Tayd~~~A~~ae~ag-iDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~ 89 (260)
T d1o66a_ 15 EKIAM--L--TAYESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQ 89 (260)
T ss_dssp CCEEE--E--ECCSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSS
T ss_pred CcEEE--E--eCCCHHHHHHHHHcC-CCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhc
Confidence 46664 2 356788999888888 3443221 1 2467888888888888766666443333221
Q ss_pred --cH---HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 76 --HN---ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 76 --~~---~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
.+ .....+.+.|++.|-+-.|....++++.+.+.|+.|+.
T Consensus 90 ~~~~~~~~a~~~~~~~gadavk~eg~~~~~~~i~~l~~~gIPV~g 134 (260)
T d1o66a_ 90 QSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQMRGIPVCA 134 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHHHHTTCCEEE
T ss_pred chhHHHHHHHHHHHHhhhhhccccchhhhhHHHHHHHHcCCeeEe
Confidence 12 23445667899999988665556788889999999874
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.00 E-value=2.7 Score=32.39 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.++++|+.. .+++-|- ....++++.+++.++++|.+.--. |++ +..+ +..+...
T Consensus 66 i~~~i~~~k~~~~~~~I~VE----v~s~~q~~~a~~~~~diImLDN~s-p~~-~k~~----------------v~~~~~~ 123 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVE----VDSLEQLDAVLPEKPELILLDNFA-VWQ-TQTA----------------VQRRDSR 123 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEE----ESSHHHHHHHGGGCCSEEEEETCC-HHH-HHHH----------------HHHHHHH
T ss_pred hhhhhhhhhhhcCCCceEEE----eccHHHhhhhhhcCCcEEEecCcC-hHh-HHHH----------------HHHhhcc
Confidence 455666676653 2344432 345788899999999999987333 333 3321 1122222
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
- ..+.+-++||| +.+.+.++...|+|.+.+|..+-..
T Consensus 124 ~--~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~galt~sa 160 (169)
T d1qpoa1 124 A--PTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSV 160 (169)
T ss_dssp C--TTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSB
T ss_pred C--CeeEEEEeCCC-CHHHHHHHHHcCCCEEECCccccCC
Confidence 1 25788899999 8889999999999999999765543
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.88 Score=32.85 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=52.3
Q ss_pred eeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 68 VGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 68 vnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++.......+.++.+.+..+++|.+....|. ..-+.++.++++.- ++|||+-.|-.+..
T Consensus 27 ~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~-----------------~~G~~~~~~~r~~~---~~pii~lt~~~~~~ 86 (121)
T d1xhfa1 27 YDVFEATDGAEMHQILSEYDINLVIMDINLPG-----------------KNGLLLARELREQA---NVALMFLTGRDNEV 86 (121)
T ss_dssp CEEEEESSHHHHHHHHHHSCCSEEEECSSCSS-----------------SCHHHHHHHHHHHC---CCEEEEEESCCSHH
T ss_pred CEEEEECChHHHHHHHHhcCCCEEEeecccCC-----------------ccCcHHHHHHHhcC---CCcEEEEECCCCHH
Confidence 34443334456666666777777777665431 12345666666643 79999999999999
Q ss_pred HHHHHHHCCCcEEEe
Q 022271 148 GYVAALSLGAQGICL 162 (300)
Q Consensus 148 ~v~aal~lGAdgV~~ 162 (300)
+..+++.+||+....
T Consensus 87 ~~~~a~~~Ga~dyl~ 101 (121)
T d1xhfa1 87 DKILGLEIGADDYIT 101 (121)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999998654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=88.91 E-value=0.82 Score=37.02 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+..+.+.+.|++++.+.+-.| . .+..+..+++... + -++.+|.|.|.+++..+..+|
T Consensus 32 ~~~~~al~~~Gi~~iEitl~~p-~------------------a~~~i~~l~~~~p--~-~~vGaGTV~~~~~~~~a~~aG 89 (216)
T d1mxsa_ 32 LPLADALAAGGIRTLEVTLRSQ-H------------------GLKAIQVLREQRP--E-LCVGAGTVLDRSMFAAVEAAG 89 (216)
T ss_dssp HHHHHHHHHTTCCEEEEESSST-H------------------HHHHHHHHHHHCT--T-SEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEeCCCh-h------------------HHHHHHHHHHhCC--C-cceeeeeeecHHHHHHHHhCC
Confidence 4567777788888888777543 1 2344555666542 4 479999999999999999999
Q ss_pred CcEEE
Q 022271 157 AQGIC 161 (300)
Q Consensus 157 AdgV~ 161 (300)
|+.++
T Consensus 90 a~Fiv 94 (216)
T d1mxsa_ 90 AQFVV 94 (216)
T ss_dssp CSSEE
T ss_pred CCEEE
Confidence 98443
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.96 E-value=4.2 Score=31.19 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhc-CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHh
Q 022271 51 LRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDL 129 (300)
Q Consensus 51 l~~~i~~~r~~~-~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~ 129 (300)
+.+.+.++|+.. .+++-| .....++++.+++.++++|.+.--. |+++-+. ++.
T Consensus 66 ~~~~~~~~~~~~~~~~IeV----Ev~~~~~~~~a~~~g~diImLDN~~-pe~~~~a---------------------v~~ 119 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEV----EVENLDELDDALKAGADIIMLDNFN-TDQMREA---------------------VKR 119 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEE----EESSHHHHHHHHHTTCSEEEESSCC-HHHHHHH---------------------HHT
T ss_pred hhhhhHHHhhcCCCceEEE----ecCcHHHHHHHHhcCCcEEEecCCC-HHHHHHH---------------------HHh
Confidence 345566665542 233333 2234677888889999999987332 3433221 122
Q ss_pred hCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccc
Q 022271 130 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 167 (300)
Q Consensus 130 ~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl 167 (300)
++ .++.+-++||| +.+.+.++-..|+|.+.+|...-
T Consensus 120 i~-~~~~lEaSGgI-~~~ni~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 120 VN-GQARLEVSGNV-TAETLREFAETGVDFISVGALTK 155 (167)
T ss_dssp TC-TTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHH
T ss_pred cC-CceEEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 22 25788899999 77889999999999999997643
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=5.2 Score=33.00 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=66.8
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCceEEecCC--------C-----CCCHHHHHHHHHHHHhhcCCcEEeeeecCCCc-
Q 022271 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------D-----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (300)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~-----~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~- 76 (300)
.||.+ ...-+..+|..+.++| +.++-.| | -.+.|+...+.+.+|+-...+|-+-=++..++
T Consensus 15 ~ki~~----lTayD~~~A~~~~~ag-vDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~ 89 (262)
T d1m3ua_ 15 KRFAT----ITAYDYSFAKLFADEG-LNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA 89 (262)
T ss_dssp CCEEE----EECCSHHHHHHHHHHT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred CcEEE----EEcCCHHHHHHHHHCC-CCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence 45654 2456788888888877 4444221 1 14678888888988887766665533333222
Q ss_pred -----HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 77 -----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 77 -----~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
......+.+.|++.|-+-.|..-.++++.+.+.|+.|+.
T Consensus 90 ~~~~a~~~a~~l~~~GAdaVKlEgg~~~~~~I~~L~~~gIPV~g 133 (262)
T d1m3ua_ 90 TPEQAFENAATVMRAGANMVKIEGGEWLVETVQMLTERAVPVCG 133 (262)
T ss_dssp SHHHHHHHHHHHHHTTCSEEECCCSGGGHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHHHHhcCCcEEEeccchhHHHHHHHHHHcCCeEEe
Confidence 223456678999999888664446789999999999975
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.48 Score=38.41 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+.++.+.+.|+++|.+.+-.| ..+..+.++++... ++ ++.+|-|.|.+++.++..+||
T Consensus 31 ~~~~al~~~Gi~~iEitl~tp-------------------~a~~~I~~l~~~~p--~~-~vGaGTV~~~~~~~~a~~aGa 88 (213)
T d1wbha1 31 PMAKALVAGGVRVLNVTLRTE-------------------CAVDAIRAIAKEVP--EA-IVGAGTVLNPQQLAEVTEAGA 88 (213)
T ss_dssp HHHHHHHHTTCCEEEEESCST-------------------THHHHHHHHHHHCT--TS-EEEEESCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEeCCCh-------------------hHHHHHHHHHHHCC--CC-eeeccccccHHHHHHHHHCCC
Confidence 445555566666666655332 24455666666653 54 799999999999999999999
Q ss_pred cEEE
Q 022271 158 QGIC 161 (300)
Q Consensus 158 dgV~ 161 (300)
+.++
T Consensus 89 ~Fiv 92 (213)
T d1wbha1 89 QFAI 92 (213)
T ss_dssp SCEE
T ss_pred cEEE
Confidence 8554
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=87.74 E-value=1.2 Score=32.95 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=52.6
Q ss_pred eeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 68 VGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 68 vnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++.......+.++.+.+..+++|.+.+..|. ..-+.++..++..-...++|||.-.+-.+..
T Consensus 26 ~~v~~a~~~~eal~~~~~~~~dlil~D~~~p~-----------------~~G~~~~~~ir~~~~~~~~piI~lt~~~~~~ 88 (139)
T d1w25a1 26 YEVSTAMDGPTALAMAARDLPDIILLDVMMPG-----------------MDGFTVCRKLKDDPTTRHIPVVLITALDGRG 88 (139)
T ss_dssp CEEEEESSHHHHHHHHHHHCCSEEEEESCCSS-----------------SCHHHHHHHHHHSTTTTTSCEEEEECSSCHH
T ss_pred CEEEEEccchhhhhhhhcccceeeeeeccccC-----------------CCchHHHHHhhhcccccCCCEEEEEcCCCHH
Confidence 34444334466677777777887777765431 1234445555543222379999999999999
Q ss_pred HHHHHHHCCCcEEEe
Q 022271 148 GYVAALSLGAQGICL 162 (300)
Q Consensus 148 ~v~aal~lGAdgV~~ 162 (300)
...+++.+||+....
T Consensus 89 ~~~~a~~~Ga~dyl~ 103 (139)
T d1w25a1 89 DRIQGLESGASDFLT 103 (139)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999998654
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=3.6 Score=33.74 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=58.0
Q ss_pred cccccCCccceecCCCCCCCCcHHHHHHHHhCCceEEec---CCCCCCHHHHHHHHHHHHhhcCCcEEeeeecCCCcHHH
Q 022271 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN 79 (300)
Q Consensus 3 ~~~~lg~~~Pii~apM~~g~s~~~la~avs~aGglG~i~---~~~~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~~~~~ 79 (300)
|++.|.-..|++..=+ ..+++.++..++.+| +.++- -.+..+.+++...++.++...-.|+ | -.+..+...
T Consensus 7 lk~~l~~g~~~~G~~~--~~~~p~~~ei~a~~G-~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~-V--Rvp~~~~~~ 80 (253)
T d1dxea_ 7 FKAALAAKQVQIGCWS--ALSNPISTEVLGLAG-FDWLVLDGEHAPNDISTFIPQLMALKGSASAPV-V--RVPTNEPVI 80 (253)
T ss_dssp HHHHHHTTCCEEEEEE--CSCSHHHHHHHTTSC-CSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEE-E--ECSSSCHHH
T ss_pred HHHHHHCCCCEEEEEe--cCCCHHHHHHHHcCC-CCEEEEecccCCCChhHHHHHHHHHhccCCCce-e--cCCCCCHHH
Confidence 4455555667775434 368899999889988 66651 1123689999888888876432333 2 334456788
Q ss_pred HHHHHHcCCcEEEE
Q 022271 80 IKAILSEKVAVLQV 93 (300)
Q Consensus 80 ~~~~~e~g~~~i~~ 93 (300)
++.+++.|+..|.+
T Consensus 81 i~~~LD~Ga~GIiv 94 (253)
T d1dxea_ 81 IKRLLDIGFYNFLI 94 (253)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHhcCccEEEe
Confidence 99999999998876
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.01 E-value=4.5 Score=29.88 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCCCCCCcHHHHHHHHhCCceEEecCCCCCCHHHHH-HHHHHHHhhcCCcEEeeeec----------C------C-----
Q 022271 17 PLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLR-DLIRKTRSLTERPFGVGVVL----------A------F----- 74 (300)
Q Consensus 17 pM~~g~s~~~la~avs~aGglG~i~~~~~~~~~~l~-~~i~~~r~~~~~P~gvnl~~----------~------~----- 74 (300)
|+. +.|+.++-....+.--+.++++. .+++..- ..++.+++..-+.|.||--. . .
T Consensus 3 ~~~-~msd~~i~~~L~~~ksIAVVGaS--~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~ 79 (139)
T d2d59a1 3 PID-GLTDEDIREILTRYKKIALVGAS--PKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVD 79 (139)
T ss_dssp CSS-CCCHHHHHHHHHHCCEEEEETCC--SCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEE
T ss_pred Ccc-cCCHHHHHHHHhcCCeEEEEeec--CCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEE
Confidence 565 67898988888888888888874 2443322 23344443321234444111 0 0
Q ss_pred ---C---cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeec
Q 022271 75 ---P---HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ 116 (300)
Q Consensus 75 ---~---~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~ 116 (300)
+ ..+.++.+.+.|++.+|+..|...++..+.++++|+.++..
T Consensus 80 i~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~~a~~~gi~vig~ 127 (139)
T d2d59a1 80 LFVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVAN 127 (139)
T ss_dssp ECSCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEES
T ss_pred EEeCHHHHHHHHHHHHHhCCCEEEEeccccCHHHHHHHHHCCCEEEcC
Confidence 0 15678889999999999988888888899999999988753
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=86.83 E-value=1.7 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=53.0
Q ss_pred eecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH
Q 022271 70 VVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 149 (300)
Q Consensus 70 l~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v 149 (300)
+.......+.++.+.+..+++|.+....|. ..-+.++.++++.- .++|||.--|..+.+..
T Consensus 28 v~~a~~g~eal~~~~~~~~dlillD~~mP~-----------------~~G~el~~~lr~~~--~~~pvi~lt~~~~~~~~ 88 (119)
T d1peya_ 28 TFQAANGLQALDIVTKERPDLVLLDMKIPG-----------------MDGIEILKRMKVID--ENIRVIIMTAYGELDMI 88 (119)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEESCCTT-----------------CCHHHHHHHHHHHC--TTCEEEEEESSCCHHHH
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEeccCCC-----------------CCHHHHHHHHHHhC--CCCcEEEEecCCCHHHH
Confidence 333334456667777777788777765541 22356777777653 27999999999999999
Q ss_pred HHHHHCCCcEEEe
Q 022271 150 VAALSLGAQGICL 162 (300)
Q Consensus 150 ~aal~lGAdgV~~ 162 (300)
..++.+||++...
T Consensus 89 ~~a~~~Ga~~yl~ 101 (119)
T d1peya_ 89 QESKELGALTHFA 101 (119)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 9999999998643
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.48 E-value=1.2 Score=31.75 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHH
Q 022271 74 FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 153 (300)
Q Consensus 74 ~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal 153 (300)
....+.++.+.+..+++|.+.+..|. ..-+.++.++++.- ++|||+--+-.+..+..+++
T Consensus 31 ~~~~eal~~~~~~~~dlillD~~mp~-----------------~~G~~~~~~i~~~~---~~pvI~lt~~~~~~~~~~a~ 90 (117)
T d2a9pa1 31 FNGREALEQFEAEQPDIIILDLMLPE-----------------IDGLEVAKTIRKTS---SVPILMLSAKDSEFDKVIGL 90 (117)
T ss_dssp SSHHHHHHHHHHHCCSEEEECSSCSS-----------------SCHHHHHHHHHTTC---CCCEEEEESCCSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEeccccCC-----------------CCccHHHHHHHhCC---CCCEEEEecCCCHHHHHHHH
Confidence 33456677777777777777665432 12345666666542 79999999999999999999
Q ss_pred HCCCcEEEe
Q 022271 154 SLGAQGICL 162 (300)
Q Consensus 154 ~lGAdgV~~ 162 (300)
.+||+....
T Consensus 91 ~~Ga~d~l~ 99 (117)
T d2a9pa1 91 ELGADDYVT 99 (117)
T ss_dssp HHTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998654
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=86.44 E-value=8.8 Score=32.71 Aligned_cols=151 Identities=19% Similarity=0.135 Sum_probs=79.4
Q ss_pred CccceecCCCCCCCCc---HHHHHHHHhCCceEEecCCCC---------C-CHHHHHHHHHHHHhhcCCcEEeeeecCCC
Q 022271 9 FEYGIVQAPLGPDISG---PELVAAVANAGGLGLLRAPDW---------E-APDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (300)
Q Consensus 9 ~~~Pii~apM~~g~s~---~~la~avs~aGglG~i~~~~~---------~-~~~~l~~~i~~~r~~~~~P~gvnl~~~~~ 75 (300)
-+..+|.+|... -|. -+.|..+.++|.=-+++. .| . .-++--+.++++++.++.|+-..+.-...
T Consensus 93 ~~l~lIAGPC~v-ES~e~~~~~A~~lke~g~~~~r~g-~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvTdV~~~~~ 170 (338)
T d1vr6a1 93 GYFTIIAGPCSV-EGREMLMETAHFLSELGVKVLRGG-AYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDD 170 (338)
T ss_dssp TEEEEEEECSBC-CCHHHHHHHHHHHHHTTCCEEECB-SCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSGGG
T ss_pred CceEEEecCCCC-CCHHHHHHHHHHHHHhCccccccc-eecccccccccccchHHHHHHHHHHHhhcCceeEEeccchhh
Confidence 356788888862 343 256677777765433322 11 1 11333467888888887777554442210
Q ss_pred -------------------cHHHHHHHHHcCCcEEEEcC-CCCcHHHHHHH---HHCCCe-Ee-ecc------------C
Q 022271 76 -------------------HNENIKAILSEKVAVLQVSW-GEYSEELVLEA---HSAGVK-VV-PQD------------G 118 (300)
Q Consensus 76 -------------------~~~~~~~~~e~g~~~i~~~~-G~~~~~~v~~~---~~~G~~-v~-~~~------------~ 118 (300)
+.+.++.+-+.+-++..... ...+++++..+ ...|-. ++ .-. -
T Consensus 171 ~~~~~e~~DilQI~A~~~~n~~LL~~~g~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~l 250 (338)
T d1vr6a1 171 LPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTL 250 (338)
T ss_dssp HHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBC
T ss_pred hhhhhceeeeEEechhhccCHHHHHHhhccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccch
Confidence 13344444444444444321 12234444332 233311 11 111 1
Q ss_pred hhchHHHHHHhhCCCCCcEEEc----cCCCChH--HHHHHHHCCCcEEEecc
Q 022271 119 LISLLPMVVDLIGDRDIPIIAA----GGIVDAR--GYVAALSLGAQGICLGT 164 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaa----GGI~~g~--~v~aal~lGAdgV~~GT 164 (300)
.+..+|.+++.. ..|||.. ||-+.-- -..+++++||||+++=+
T Consensus 251 D~~~i~~~k~~~---~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~ 299 (338)
T d1vr6a1 251 DISAVPIIRKES---HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV 299 (338)
T ss_dssp CTTHHHHHHHHB---SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB
T ss_pred hhcccceeeccc---cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe
Confidence 345678777664 6899973 5543332 24578889999999844
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=86.02 E-value=1 Score=32.53 Aligned_cols=68 Identities=22% Similarity=0.144 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..+++|.+....|. ..-+.++.++++.. .++|||.-.|..+.++..+++.
T Consensus 35 ~~~~a~~~l~~~~~dlii~D~~mp~-----------------~~G~el~~~l~~~~--~~~piI~~t~~~~~~~~~~a~~ 95 (123)
T d1krwa_ 35 NGNEVLAALASKTPDVLLSDIRMPG-----------------MDGLALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQ 95 (123)
T ss_dssp SSHHHHHHHTTCCCSEEEECCSSSS-----------------STTHHHHHHHHHHS--SSCCEEESCCCSCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEehhhcCC-----------------chHHHHHHHHHHhC--CCCeEEEEecCCCHHHHHHHHH
Confidence 3355555555566666666554431 22356777777654 3799999999999999999999
Q ss_pred CCCcEEE
Q 022271 155 LGAQGIC 161 (300)
Q Consensus 155 lGAdgV~ 161 (300)
+||+...
T Consensus 96 ~Ga~dyl 102 (123)
T d1krwa_ 96 QGAFDYL 102 (123)
T ss_dssp HTEEEEC
T ss_pred cCCCeEE
Confidence 9998743
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=1 Score=32.47 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..+++|.+....|. ..-+.++.++++.-...++|||+--+..+..+...++.
T Consensus 32 ~~~~al~~l~~~~~dlil~D~~mp~-----------------~~G~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~ 94 (121)
T d1zesa1 32 DYDSAVNQLNEPWPDLILLDWMLPG-----------------GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLE 94 (121)
T ss_dssp SHHHHHHHSSSSCCSEEEECSSCTT-----------------SCHHHHHHHHHHSTTTTTSCEEEEESCCSHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCEEEeecCCCC-----------------CCHHHHHHHHHhCccCCCCeEEEEECCCCHHHHHHHHH
Confidence 3455666666667777777665531 23456677776532223799999999999999999999
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+||++...
T Consensus 95 ~G~~d~l~ 102 (121)
T d1zesa1 95 TGADDYIT 102 (121)
T ss_dssp HTCSEEEE
T ss_pred CCCCEEEE
Confidence 99998654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=85.58 E-value=2.3 Score=30.32 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=51.6
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
..+.++.+.+..+++|.+.+..|. ..-+.++.++++.- .++|||.--|-.+......++.+
T Consensus 35 ~~~al~~~~~~~~dliilD~~mp~-----------------~~G~e~~~~ir~~~--~~~pvi~ls~~~~~~~~~~a~~~ 95 (118)
T d1u0sy_ 35 GREAVEKYKELKPDIVTMDITMPE-----------------MNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKA 95 (118)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCGG-----------------GCHHHHHHHHHHHC--TTCCEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCEEEEecCCCC-----------------CCHHHHHHHHHHhC--CCCcEEEEEccCCHHHHHHHHHc
Confidence 456677777778888888776542 23457777777654 27999999999999999999999
Q ss_pred CCcEEEe
Q 022271 156 GAQGICL 162 (300)
Q Consensus 156 GAdgV~~ 162 (300)
||++...
T Consensus 96 Ga~~yl~ 102 (118)
T d1u0sy_ 96 GAKDFIV 102 (118)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 9998643
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.41 E-value=1.5 Score=32.29 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..+++|.+.+..|. ..-+.++.++++.- .++|||.--|-.+...+..++.
T Consensus 32 ~~~eAl~~l~~~~~dlvilD~~mp~-----------------~~G~e~~~~lr~~~--~~~piI~lT~~~~~~~~~~a~~ 92 (137)
T d1ny5a1 32 RGKEAYKLLSEKHFNVVLLDLLLPD-----------------VNGLEILKWIKERS--PETEVIVITGHGTIKTAVEAMK 92 (137)
T ss_dssp SHHHHHHHHHHSCCSEEEEESBCSS-----------------SBHHHHHHHHHHHC--TTSEEEEEEETTCHHHHHHHHT
T ss_pred CHHHHHHHhhccccccchHHHhhhh-----------------hhHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHH
Confidence 3455566666666677666654431 23456777777653 3799999999999999999999
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+||+....
T Consensus 93 ~Ga~dyl~ 100 (137)
T d1ny5a1 93 MGAYDFLT 100 (137)
T ss_dssp TTCCEEEE
T ss_pred cCCCEEEe
Confidence 99998665
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=84.97 E-value=1.1 Score=32.14 Aligned_cols=70 Identities=7% Similarity=-0.047 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..+++|.+.+..|. ..-+.++.++++.-...++|||+--+..+..+...++.
T Consensus 33 ~~~~al~~~~~~~~dlil~D~~mp~-----------------~dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~~ 95 (123)
T d1mb3a_ 33 EGLSALSIARENKPDLILMDIQLPE-----------------ISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIRE 95 (123)
T ss_dssp CHHHHHHHHHHHCCSEEEEESBCSS-----------------SBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEEEeccCC-----------------CcHHHHHHHHHhCCCcCCCCeEEEEEecCHHHHHHHHH
Confidence 3355566666666676666654431 23456667776543223799999999999999999999
Q ss_pred CCCcEEE
Q 022271 155 LGAQGIC 161 (300)
Q Consensus 155 lGAdgV~ 161 (300)
+||++..
T Consensus 96 ~G~~~~l 102 (123)
T d1mb3a_ 96 GGCEAYI 102 (123)
T ss_dssp HTCSEEE
T ss_pred cCCCEEE
Confidence 9999854
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=84.84 E-value=4.2 Score=29.88 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=34.8
Q ss_pred hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEe
Q 022271 119 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 162 (300)
Q Consensus 119 ~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~ 162 (300)
-+.++.++++.-...++|||.--+-.+..+..+++.+||++...
T Consensus 71 G~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~ 114 (144)
T d1i3ca_ 71 GREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 114 (144)
T ss_dssp HHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 35677777664222379999999999999999999999998765
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.77 E-value=0.61 Score=41.10 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHHHCCCeEeeccC-------hhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEec
Q 022271 101 ELVLEAHSAGVKVVPQDG-------LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 163 (300)
Q Consensus 101 ~~v~~~~~~G~~v~~~~~-------~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~G 163 (300)
..++.+.++|+.++.... ....+..+++.. .++||| +|.+.|.+.+......|||+|-+|
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~--~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVG 188 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKY--PNLQVI-GGNVVTAAQAKNLIDAGVDALRVG 188 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHS--TTCEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHC--CCCcee-ecccccHHHHHHHHHhCCCEEeec
Confidence 345556678888875421 334455565554 267764 999999999999999999999886
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=84.09 E-value=8.4 Score=31.61 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCcEEEccCC-C-ChHHHHHHHHCCCcEEEeccccccCcccCCCHHHHHHHHcC
Q 022271 134 DIPIIAAGGI-V-DARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 185 (300)
Q Consensus 134 ~iPViaaGGI-~-~g~~v~aal~lGAdgV~~GT~fl~t~Es~~~~~~k~~i~~a 185 (300)
+..+-++++- . ..+....+|..||+++++|--|+.+. ....+..+++|.++
T Consensus 253 ~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~-~~~~~~~~~~i~~~ 305 (312)
T d1r30a_ 253 TSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTP-NPEEDKDLQLFRKL 305 (312)
T ss_dssp TSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSB-CCCHHHHHHHHHHT
T ss_pred CcceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCC-CCCHHHHHHHHHHc
Confidence 3334444432 2 33444568999999999987776543 34556677777654
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=84.00 E-value=4.5 Score=33.92 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=89.1
Q ss_pred cccC--CccceecCCCCCCCC-------cHHHHHHHHhCCceEEecCCCCCC-HHHHHHHHHHHHhhc-CCcEEeeeecC
Q 022271 5 GMLG--FEYGIVQAPLGPDIS-------GPELVAAVANAGGLGLLRAPDWEA-PDYLRDLIRKTRSLT-ERPFGVGVVLA 73 (300)
Q Consensus 5 ~~lg--~~~Pii~apM~~g~s-------~~~la~avs~aGglG~i~~~~~~~-~~~l~~~i~~~r~~~-~~P~gvnl~~~ 73 (300)
+++| ++.||+.+||. +.+ ...|+.+..+.|....++...... .+......+..+... ..+...+....
T Consensus 28 ~i~G~~l~~Pi~is~Ms-~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (329)
T d1p0ka_ 28 KIGELSSSSPIFINAMT-GGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSE 106 (329)
T ss_dssp EETTEEESCSEEEECCC-CSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHHHHHHHHHHHHCSSSCEEEEEETT
T ss_pred EECCEEcCCceEECCHH-HhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHHHhhhhhHhhhCCcceEEEeeccc
Confidence 3454 57799999997 344 236788888888766665432222 222233333344332 23444555444
Q ss_pred CCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEE--ccCCCChHHHHH
Q 022271 74 FPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIA--AGGIVDARGYVA 151 (300)
Q Consensus 74 ~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPVia--aGGI~~g~~v~a 151 (300)
.......+.+.+.+.+.+.++...+. ..... .+.... ......+.++++.. +.|++. .|.+.+.+++..
T Consensus 107 ~~~~~~~~~~~~~g~~ai~~~~~~~~-~~~~~---~~~~~~--~~~~~~i~~i~~~~---~~~vivk~v~~~~~~~~a~~ 177 (329)
T d1p0ka_ 107 ATAAQAKEAVEMIGANALQIHLNVIQ-EIVMP---EGDRSF--SGALKRIEQICSRV---SVPVIVKEVGFGMSKASAGK 177 (329)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECTTT-TC-----------C--TTHHHHHHHHHHHC---SSCEEEEEESSCCCHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEecccccc-hhhhc---cccccc--cchHHHHHHHHHHc---CCCcEEEecCCcchHHHHHH
Confidence 44455556666778898887654431 11110 111100 23456677777765 567776 788899999999
Q ss_pred HHHCCCcEEEecc
Q 022271 152 ALSLGAQGICLGT 164 (300)
Q Consensus 152 al~lGAdgV~~GT 164 (300)
+...|||++.++.
T Consensus 178 ~~~~GaD~i~v~~ 190 (329)
T d1p0ka_ 178 LYEAGAAAVDIGG 190 (329)
T ss_dssp HHHHTCSEEEEEC
T ss_pred HHhcCCCEEEEcC
Confidence 9999999999953
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.83 E-value=1.1 Score=34.82 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhc--CCcEEeeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHH
Q 022271 51 LRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVD 128 (300)
Q Consensus 51 l~~~i~~~r~~~--~~P~gvnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~ 128 (300)
+++.++.+|+.. .+++.|-. ...+++..+++.|+++|.+.-.. |+ -++.+ +..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv----~~~~e~~~a~~~g~d~i~LDn~~-pe-~~k~~----------------~~~lk~ 121 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEV----ENLEDALRAVEAGADIVMLDNLS-PE-EVKDI----------------SRRIKD 121 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE----SSHHHHHHHHHTTCSEEEEESCC-HH-HHHHH----------------HHHHHH
T ss_pred HHHHHHHHHhhCCCCceEEEEe----CcHHHHHHHHhcCccEEEEcCcC-hh-hHhHH----------------HHHHHh
Confidence 445566666543 24454432 34677888889999999987333 33 33321 122222
Q ss_pred hhCCCCCcEEEccCCCChHHHHHHHHCCCcEEEeccccccC
Q 022271 129 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 129 ~~~~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. . .++.+-++||| +.+.+.++...|+|.+.+|..+-..
T Consensus 122 ~-~-~~i~lEaSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a 159 (170)
T d1o4ua1 122 I-N-PNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQE 159 (170)
T ss_dssp H-C-TTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSC
T ss_pred h-C-CcEEEEEECCC-CHHHHHHHHHcCCCEEEcCccccCC
Confidence 2 2 26889999999 5667788888999999999765533
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.01 E-value=3 Score=30.28 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=50.9
Q ss_pred eeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHH
Q 022271 69 GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 148 (300)
Q Consensus 69 nl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~ 148 (300)
.+.......+.++.+.+..+++|.+.+..|. ..-+.++.++++.-. .+||++-.+-.+..+
T Consensus 34 ~v~~a~~g~ea~~~~~~~~~dlillD~~mP~-----------------~dG~el~~~ir~~~~--~~pii~lt~~~~~~~ 94 (133)
T d2ayxa1 34 QCKTANDGVDALNVLSKNHIDIVLSDVNMPN-----------------MDGYRLTQRIRQLGL--TLPVIGVTANALAEE 94 (133)
T ss_dssp EEEEECCSHHHHHHHHHSCCSEEEEEESSCS-----------------SCCHHHHHHHHHHHC--CSCEEEEESSTTSHH
T ss_pred EEEEECcHHHHHHHHhccCceEEEEeccCCC-----------------CCHHHHHHHHHHhCC--CCCEEEEeccCCHHH
Confidence 3333333455566666666666666655431 123567777776543 689999999999999
Q ss_pred HHHHHHCCCcEEEe
Q 022271 149 YVAALSLGAQGICL 162 (300)
Q Consensus 149 v~aal~lGAdgV~~ 162 (300)
...++.+||+....
T Consensus 95 ~~~~~~~G~~~~l~ 108 (133)
T d2ayxa1 95 KQRCLESGMDSCLS 108 (133)
T ss_dssp HHHHHHCCCEEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998643
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=82.99 E-value=2.1 Score=35.43 Aligned_cols=124 Identities=13% Similarity=0.216 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHH----HHH
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAA 152 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v----~aa 152 (300)
..+++.+++.|++.+.+.. .-.+ ... +...--..++..+++++++ ++|||+.-|=.+-+++ ..+
T Consensus 27 ~~~i~~l~~~Gv~gl~~~G-~tGE-~~~---------Ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a 94 (292)
T d1xkya1 27 TKLVNYLIDNGTTAIVVGG-TTGE-SPT---------LTSEEKVALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKA 94 (292)
T ss_dssp HHHHHHHHHTTCCEEEESS-TTTT-GGG---------SCHHHHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECe-Eccc-hhh---------CCHHHHHHHHHHHHHHhCC-CceEEEecCcccHHHHHHHHHHH
Confidence 5678888899999988763 2111 000 0000012455566666643 7899987776665554 345
Q ss_pred HHCCCcEEEeccccccC-cccCCCHHHHHHHHcCCCcceEEEecccCCCCCCCceecChhhHhhhc
Q 022271 153 LSLGAQGICLGTRFVAS-EESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 217 (300)
Q Consensus 153 l~lGAdgV~~GT~fl~t-~Es~~~~~~k~~i~~a~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 217 (300)
..+|||++++..++... .+...-+.|+ .+.++.+..+ .++. +|...++.+..++..++.+
T Consensus 95 ~~~Gad~ilv~pP~~~~~s~~~i~~~~~-~v~~~~~~pi-~iYn---~P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 95 TEVGVDAVMLVAPYYNKPSQEGMYQHFK-AIAESTPLPV-MLYN---VPGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHH-HHHHTCSSCE-EEEE---CHHHHSSCCCHHHHHHHHT
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHH-HHhccCCCcE-EEEe---CCcccCCccCHHHHhhhcc
Confidence 67999999999887664 2333334444 4555544432 3443 2333334566566665543
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=3.2 Score=30.28 Aligned_cols=68 Identities=16% Similarity=0.064 Sum_probs=50.6
Q ss_pred cHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHC
Q 022271 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL 155 (300)
Q Consensus 76 ~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~l 155 (300)
..+.++.+.+..+++|.+....|. ..-+.++.++++.. .++||+.--+-.+.+.+.+++.+
T Consensus 37 ~~~al~~~~~~~~DlvllD~~mP~-----------------~~G~el~~~ir~~~--~~~~vivlt~~~~~~~~~~a~~~ 97 (138)
T d1a04a2 37 GEQGIELAESLDPDLILLDLNMPG-----------------MNGLETLDKLREKS--LSGRIVVFSVSNHEEDVVTALKR 97 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSTT-----------------SCHHHHHHHHHHSC--CCSEEEEEECCCCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC-----------------CCHHHHHHHHHhhC--CCCCEEEEEEECCHHHHHHHHHc
Confidence 356677777777888877766542 23467777787643 36888888889999999999999
Q ss_pred CCcEEEe
Q 022271 156 GAQGICL 162 (300)
Q Consensus 156 GAdgV~~ 162 (300)
||++...
T Consensus 98 Ga~~yl~ 104 (138)
T d1a04a2 98 GADGYLL 104 (138)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998654
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.79 E-value=7.7 Score=31.88 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHhCCceEEecCC--------C-----CCCHHHHHHHHHHHHhhcCCcEEeeeecCCC----cHHH----
Q 022271 21 DISGPELVAAVANAGGLGLLRAP--------D-----WEAPDYLRDLIRKTRSLTERPFGVGVVLAFP----HNEN---- 79 (300)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~--------~-----~~~~~~l~~~i~~~r~~~~~P~gvnl~~~~~----~~~~---- 79 (300)
..-+..+|.++.++| +.+|-.| | ..+.|++..+.+.+|+-...+|-+-=++... .++.
T Consensus 23 TaYD~~~A~~~~~ag-iDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~nA 101 (262)
T d1oy0a_ 23 TAYDYSTARIFDEAG-IPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAA 101 (262)
T ss_dssp ECCSHHHHHHHHTTT-CCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHH
T ss_pred eCCCHHHHHHHHHcC-CCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcccchHHHHHHH
Confidence 356788999888888 3443211 1 2467888888888887766665443332211 1222
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEee
Q 022271 80 IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP 115 (300)
Q Consensus 80 ~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~ 115 (300)
.+.+.+.|++.|-+-.|.-..++|+.+.+.|+.|+.
T Consensus 102 ~r~~~~~ga~avkleg~~~~~~~I~~L~~~gIPV~g 137 (262)
T d1oy0a_ 102 TRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMA 137 (262)
T ss_dssp HHHHHTTCCSEEEEEBSGGGHHHHHHHHHHTCCEEE
T ss_pred HHHHhccccceeeechhhhhHHHHHHHHhcCCceEE
Confidence 345557899999988664456788888899999874
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=82.73 E-value=9.5 Score=30.02 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=31.8
Q ss_pred hchHHHHHHhhC--CCCCcEEEccCCCChHHHHHHHHCCCcEEEecc
Q 022271 120 ISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 164 (300)
Q Consensus 120 ~~ll~~v~~~~~--~~~iPViaaGGI~~g~~v~aal~lGAdgV~~GT 164 (300)
+.++.++.+.++ +.+..| .+..+.+.+++.+++..|||.+-+.-
T Consensus 150 ~~~~~~~~~~~~~~~~~tki-l~AS~R~~~~~~~~~~~G~d~vTi~~ 195 (211)
T d1wx0a1 150 GELLREIVEMIQVQDLPVKV-IAASIRHPRHVTEAALLGADIATMPH 195 (211)
T ss_dssp HHHHHHHHHHHHHTTCSCEE-EEBCCCSHHHHHHHHHTTCSEEEECH
T ss_pred hhHHHHHHHHHHhcccccee-EeeecCCHHHHHHHHHcCCCEEEeCH
Confidence 456666666543 224444 45779999999999999999997753
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.60 E-value=7.7 Score=30.40 Aligned_cols=112 Identities=15% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCcEEeeeecCCCc---HHHHHHHHHcCCcEEEEcCCCCcHHHHHH----HHHCCCeEeec----------
Q 022271 54 LIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLE----AHSAGVKVVPQ---------- 116 (300)
Q Consensus 54 ~i~~~r~~~~~P~gvnl~~~~~~---~~~~~~~~e~g~~~i~~~~G~~~~~~v~~----~~~~G~~v~~~---------- 116 (300)
.++++++..+.|+-..+=..+-. ...++.+.+.++++++++. ....+.++. .++.+..++..
T Consensus 45 ~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~-~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~~ 123 (212)
T d1km4a_ 45 IIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHG-FPGADSVRACLNVAEEMGREVFLLTEMSHPGAEM 123 (212)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-TTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGGT
T ss_pred HHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEec-cCChHHHHHHHHHHHhcCCccccchhhcchhhhh
Confidence 45666665556655554444321 4557777889999999884 333444443 34445444321
Q ss_pred ------------------c------ChhchHHHHHHhhCCCCCcEEEccCCCCh-HHHHHHHHCCCcEEEeccccccC
Q 022271 117 ------------------D------GLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 169 (300)
Q Consensus 117 ------------------~------~~~~ll~~v~~~~~~~~iPViaaGGI~~g-~~v~aal~lGAdgV~~GT~fl~t 169 (300)
. ....-+..+++... +-.++..+||+-. .+....+ .|||.+++|+....+
T Consensus 124 ~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~--~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a 198 (212)
T d1km4a_ 124 FIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG--QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYLA 198 (212)
T ss_dssp THHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC--SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHTS
T ss_pred hhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC--CceeEEcCccccCCCCHHHHH-hhCCEEEECchhccC
Confidence 0 01123455555553 4567789999642 2333333 589999999887765
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=82.55 E-value=1.2 Score=32.95 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
.+.++.+.+..+++|.+.+..|. ..-+.++.++++.. .++|||.--|-.+.+.+.+++.+|
T Consensus 34 ~~al~~l~~~~~dlil~D~~mP~-----------------~~G~el~~~lr~~~--~~~pvI~lT~~~~~~~~~~a~~~G 94 (140)
T d1qkka_ 34 TEALAGLSADFAGIVISDIRMPG-----------------MDGLALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDG 94 (140)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSS-----------------SCHHHHHHHHHHHC--TTSCEEEEECGGGHHHHHHHHHTT
T ss_pred HHHHHHHhccCcchHHHhhccCC-----------------CCHHHHHHHHHHhC--CCCcEEEEECCCCHHHHHHHHHcC
Confidence 45555555566666666654431 23456777777653 379999999999999999999999
Q ss_pred CcEEEe
Q 022271 157 AQGICL 162 (300)
Q Consensus 157 AdgV~~ 162 (300)
|+....
T Consensus 95 a~dyl~ 100 (140)
T d1qkka_ 95 AYDFIA 100 (140)
T ss_dssp CCEEEE
T ss_pred CCEeec
Confidence 997665
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.83 E-value=1.5 Score=31.41 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=50.7
Q ss_pred eeeecCCCcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChH
Q 022271 68 VGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 147 (300)
Q Consensus 68 vnl~~~~~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~ 147 (300)
.++.......+.++.+.+..+++|.+....|. ..-+.++.++++.- ++|||.--+-.+..
T Consensus 25 ~~v~~a~~~~eal~~l~~~~~dliilD~~mP~-----------------~~G~e~~~~ir~~~---~~piI~lt~~~~~~ 84 (119)
T d1zh2a1 25 MRVFEAETLQRGLLEAATRKPDLIILDLGLPD-----------------GDGIEFIRDLRQWS---AVPVIVLSARSEES 84 (119)
T ss_dssp CEEEEESSHHHHHHHHHHHCCSEEEEESEETT-----------------EEHHHHHHHHHTTC---CCCEEEEESCCSHH
T ss_pred CEEEEeCCHHHHHHHHHhcCCCEEEeccccCC-----------------CCCchHHHHHHhcc---CCcEEEEeccCCHH
Confidence 33333333455666666667777766654431 12355666676543 68999999999999
Q ss_pred HHHHHHHCCCcEEEe
Q 022271 148 GYVAALSLGAQGICL 162 (300)
Q Consensus 148 ~v~aal~lGAdgV~~ 162 (300)
+...++.+||+....
T Consensus 85 ~~~~a~~~Ga~dyl~ 99 (119)
T d1zh2a1 85 DKIAALDAGADDYLS 99 (119)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999997654
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.35 E-value=3.1 Score=29.48 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHH
Q 022271 75 PHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 154 (300)
Q Consensus 75 ~~~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~ 154 (300)
...+.++.+.+..+++|.+....|. ...+.++..++... .+|||+--+-.+..+..+++.
T Consensus 33 ~~~~a~~~~~~~~~dliilD~~mp~-----------------~~g~~~~~~~~~~~---~~piI~lt~~~~~~~~~~a~~ 92 (120)
T d1zgza1 33 SGAGLREIMQNQSVDLILLDINLPD-----------------ENGLMLTRALRERS---TVGIILVTGRSDRIDRIVGLE 92 (120)
T ss_dssp SHHHHHHHHHHSCCSEEEEESCCSS-----------------SCHHHHHHHHHTTC---CCEEEEEESSCCHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEeeehhhcc-----------------chhHHHHHHHhccC---CCeEEEEEccCCHHHHHHHHH
Confidence 3456667777777888877766542 12334555554432 799999999999999999999
Q ss_pred CCCcEEEe
Q 022271 155 LGAQGICL 162 (300)
Q Consensus 155 lGAdgV~~ 162 (300)
+||+....
T Consensus 93 ~Ga~dyl~ 100 (120)
T d1zgza1 93 MGADDYVT 100 (120)
T ss_dssp HTCSEEEE
T ss_pred CCCCEEEE
Confidence 99998664
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=80.95 E-value=1.5 Score=34.99 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCCC
Q 022271 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 157 (300)
Q Consensus 78 ~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lGA 157 (300)
+..+.+++.|++++.+++-.| ..+..+.++++... +--++.+|-|.|.+++..++.+||
T Consensus 25 ~~~~al~~~Gi~~iEitlr~p-------------------~a~~~i~~l~~~~~--~~~~vGaGTV~~~~~~~~a~~aGa 83 (202)
T d1wa3a1 25 EKALAVFEGGVHLIEITFTVP-------------------DADTVIKELSFLKE--KGAIIGAGTVTSVEQCRKAVESGA 83 (202)
T ss_dssp HHHHHHHHTTCCEEEEETTST-------------------THHHHHHHTHHHHH--TTCEEEEESCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEecCCc-------------------cHHHHHHHHHHhcC--CCcEEEecccccHHHHHHHHhhcc
Confidence 456667777777777776543 12334444443221 234799999999999999999999
Q ss_pred cEEE
Q 022271 158 QGIC 161 (300)
Q Consensus 158 dgV~ 161 (300)
+.++
T Consensus 84 ~fiv 87 (202)
T d1wa3a1 84 EFIV 87 (202)
T ss_dssp SEEE
T ss_pred cEEe
Confidence 9775
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=80.56 E-value=3.1 Score=29.74 Aligned_cols=67 Identities=22% Similarity=0.122 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHCCCeEeeccChhchHHHHHHhhCCCCCcEEEccCCCChHHHHHHHHCC
Q 022271 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 156 (300)
Q Consensus 77 ~~~~~~~~e~g~~~i~~~~G~~~~~~v~~~~~~G~~v~~~~~~~~ll~~v~~~~~~~~iPViaaGGI~~g~~v~aal~lG 156 (300)
++.++.+.+..+++|.+....|. ..-+.++.++++.- .++|||.-.|-.+.+...+++.+|
T Consensus 37 ~~al~~~~~~~~dlvi~D~~mp~-----------------~~G~e~~~~lr~~~--~~~~iI~lt~~~~~~~~~~a~~~G 97 (123)
T d1dbwa_ 37 EAFLAFAPDVRNGVLVTDLRMPD-----------------MSGVELLRNLGDLK--INIPSIVITGHGDVPMAVEAMKAG 97 (123)
T ss_dssp HHHHHHGGGCCSEEEEEECCSTT-----------------SCHHHHHHHHHHTT--CCCCEEEEECTTCHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCcEEEEeccCcc-----------------ccchHHHHHHHhcC--CCCeEEEEEeeCCHHHHHHHHHCC
Confidence 44555555556666666554431 22456777777643 379999999999999999999999
Q ss_pred CcEEEe
Q 022271 157 AQGICL 162 (300)
Q Consensus 157 AdgV~~ 162 (300)
|+....
T Consensus 98 a~~yl~ 103 (123)
T d1dbwa_ 98 AVDFIE 103 (123)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 997553
|